Search found 92 matches

by jlspzw
Wed Nov 23, 2022 3:50 pm
Forum: Main Forum
Topic: No results after 5 days
Replies: 3
Views: 153

Re: No results after 5 days

Dear user,

The IT team has saw your request, and you should able to re-submit.

Best
IT Team
by jlspzw
Mon Nov 21, 2022 2:42 pm
Forum: Main Forum
Topic: No results after 5 days
Replies: 3
Views: 153

Re: No results after 5 days

Dear user,

We didn't see any sequence in the data folder you provided, so could you first try to re-submit the sequence?

If you have an issue with re-submission, you can send the email with your former jobid to yangzhanglab@umich.edu

Best
IT Team
by jlspzw
Sat Nov 19, 2022 1:01 pm
Forum: Main Forum
Topic: Edock computational time
Replies: 1
Views: 246

Re: Edock computational time

Dear user,

Based on our experience, edock will take hours to days, depending on the system.

Best
IT Team
by jlspzw
Sun Nov 13, 2022 10:17 am
Forum: Main Forum
Topic: [C-I-Tasser standalone] minor python fixes
Replies: 3
Views: 291

Re: [C-I-Tasser standalone] minor python fixes

BTW, we have new generation I-TASSER software that will be released soon, and we are now testing the issues. if you are interested in it, you can find it at https://zhanggroup.org/D-I-TASSER/download.html. we would appreciate that if you find any issues or give us any feedback.

Best
IT Team
by jlspzw
Fri Nov 11, 2022 2:42 am
Forum: Main Forum
Topic: [C-I-Tasser standalone] minor python fixes
Replies: 3
Views: 291

Re: [C-I-Tasser standalone] minor python fixes

Dear user,

Thanking for sharing your wonderful work. This will save a lot of other users working time. Greatly appreciate it!

Best
IT Team
by jlspzw
Thu Nov 10, 2022 3:09 am
Forum: Main Forum
Topic: How to analyze the COTH result?
Replies: 1
Views: 238

Re: How to analyze the COTH result?

Dear user, There are three sections on the COTH results page, 1 your input sequences 2 Top ten complex template alignments. Where each item has a detailed explanation at the bottom of this section. 3 COTH recombination models of the tertiary template with a quaternary framework. Let us know if you s...
by jlspzw
Wed Nov 02, 2022 2:08 am
Forum: Main Forum
Topic: Generaing seq.dat and seq.txt files with REMO
Replies: 3
Views: 388

Re: Generaing seq.dat and seq.txt files with REMO

Dear user,

you can change $dbname ="$libdir/nr/nr.filter"; to $dbname ="$libdir/nr/nr";


Best
IT team
by jlspzw
Tue Nov 01, 2022 11:13 am
Forum: Main Forum
Topic: Generaing seq.dat and seq.txt files with REMO
Replies: 3
Views: 388

Re: Generaing seq.dat and seq.txt files with REMO

Dear user, In mkseq.pl you need change the first serval lines $libdir ="$path"; #####Chainge to specify path $dbname ="$libdir/nr/nr.filter"; # The name of the BLAST data bank $ncbidir="$libdir/blast/bin"; # Where the NCBI legacy blast programs have been installed $exec...
by jlspzw
Tue Oct 25, 2022 11:49 pm
Forum: Main Forum
Topic: How to use ResQ in local?
Replies: 3
Views: 412

Re: How to use ResQ in local?

Dear user, We doubt the I-TASSER package is not correctly set. Can you first go to /share/home/cau_wangsw/software/ROSETTA/ITASSER/I-TASSER5.1, to check if the I-TASSER setting is correct? You can first check the README file in I-TASSER5.1 and run the example in I-TASSER5.1 with the main program at ...
by jlspzw
Thu Oct 20, 2022 2:28 am
Forum: Main Forum
Topic: How to use ResQ in local?
Replies: 3
Views: 412

Re: How to use ResQ in local?

Dear user, ResQ download and usage can be found here https://zhanggroup.org/ResQ/download/ Let me know if you followed that instruction or not? If you follow that instruction, is that error come from 2) runResQ.pl? Please attach all the error messages if possible. Also, I would suggest you first mak...