Zhanglab forum

Dear user,

Your change is correct. Please let us know if you have any questions.

Best
Wei

Dear user, DeepMSA2 doesn't contains aMSA, the readme file has some typo, we will delete it from readme. DeepMSA_IMG.py does not require aMSA. qMSA and dMSA is enough for next step. if you only have qMSA.hhb* dMSA.hhb* and do not have d/qMSA.jac* and others, DeepMSA_IMG.py will tell you no need to d...

Dear user,

You can check the config.py, see the dMSA_cpu setting, etc.

Please try to reduce the CPU number to see if memory can be reduced.

BTW how large is your memory on your Desktop, and how large are your sequences?

Best Regards
Wei Zheng

Dear user, You are encouraged to use https://zhanggroup.org/DMFold/ or https://zhanggroup.org/D-I-TASSER/ servers. When using D-I-TASSER, please try to select those three options. Using large IMG/JGI metagenomic database to build MSA (additional one or two days maybe applied). Using AlphaFold2 dista...

Dear Dongxiaojie,

Please send an email to zhengwei@umich.edu

Best Regards
Wei Zheng

Dear user, We are currently suffering a large number of jobs submitted from the user community, which makes our server job delayed than expected. Please let us know your job ID or email used for submission. We are trying to process the server jobs and make them faster; it may take a couple of days. ...

Dear user,

We have recently received a large number of jobs submitted to our server, so your job may take longer than expected. Your job is running now; we hope it can be completed in the next three days.

Best Regards
Wei Zheng

Dear yang,

Please check if the memory you requested is enough or not.

Best Regards
Wei Zheng

Dear Maria,

In this case, Jsmol colors the structure from N (blue) to C (red) terminus with a rainbow scale.

Best Regards
Wei Zheng

Dear Gary,

Thank you for the bug reporting. Yes, it is a typo bug in the code. We have fixed this issue and released new version of DMFold and DeepMSA2 packages.

https://zhanggroup.org/DMFold/download/
https://zhanggroup.org/DeepMSA2/download/

Best Regards
Wei Zheng