Dear Gary,
Thank you for the bug reporting. Yes, it is a typo bug in the code. We have fixed this issue and released new version of DMFold and DeepMSA2 packages.
https://zhanggroup.org/DMFold/download/
https://zhanggroup.org/DeepMSA2/download/
Best Regards
Wei Zheng
Search found 247 matches
- Fri Mar 22, 2024 4:48 pm
- Forum: Main Forum
- Topic: There may be a code error in DMFold's MSA_combination.py
- Replies: 1
- Views: 50650
- Fri Mar 22, 2024 4:21 pm
- Forum: Main Forum
- Topic: what do output colors indicate
- Replies: 3
- Views: 54825
Re: what do output colors indicate
Hi Maria,
What server did you use?
Best Regards
Wei Zheng
What server did you use?
Best Regards
Wei Zheng
- Fri Mar 22, 2024 4:20 pm
- Forum: Main Forum
- Topic: DeepMSA2 running issue
- Replies: 2
- Views: 51776
Re: DeepMSA2 running issue
Dear user,
Your job is ready now.
Best Regards
Wei Zheng
Your job is ready now.
Best Regards
Wei Zheng
- Wed Mar 20, 2024 1:51 am
- Forum: Main Forum
- Topic: not getting email from DMFold
- Replies: 3
- Views: 49201
Re: not getting email from DMFold
Hi Wyzin
You can access your job by https://zhanggroup.org/DMFold/output/DMF482643047 as one example,
Best Regards
Wei Zheng
You can access your job by https://zhanggroup.org/DMFold/output/DMF482643047 as one example,
Best Regards
Wei Zheng
- Tue Mar 19, 2024 11:44 am
- Forum: Main Forum
- Topic: not getting email from DMFold
- Replies: 3
- Views: 49201
Re: not getting email from DMFold
Dear user, Your job IDs are DMF482643047 and DMF349023445. BTW, we found some users' emails could not receive our email for unknown reasons (I also have this issue with one of my Gmail..., but not with other one, it should be issue on email side), so I would suggest you change to another email next ...
- Fri Mar 15, 2024 2:55 am
- Forum: Main Forum
- Topic: i tasser results not received
- Replies: 1
- Views: 46944
Re: i tasser results not received
Dear user,
Your job is ready at https://zhanggroup.org/I-TASSER/output/S769904/; our server has been overloaded recently, so the jobs may take longer time than usual.
Thank you
Best Regards
Wei Zheng
Your job is ready at https://zhanggroup.org/I-TASSER/output/S769904/; our server has been overloaded recently, so the jobs may take longer time than usual.
Thank you
Best Regards
Wei Zheng
- Fri Mar 15, 2024 2:53 am
- Forum: Main Forum
- Topic: Use DeepMSA2 output in ColabFold or AlphaFold
- Replies: 1
- Views: 48884
Re: Use DeepMSA2 output in ColabFold or AlphaFold
Dear user, DeepMSA2 and DMFold can output paired MSA and single MSAs. you can find one example in DMFold example folder example/AF2Models/aMSA-aMSA/multi2.2-v4/seq/msas/paired.aln and example/AF2Models/aMSA-aMSA/multi2.2-v4/seq/msas/A DMFold itself accepts customs MSAs, and you can check details at ...
- Fri Mar 15, 2024 2:42 am
- Forum: Main Forum
- Topic: Different Structures for the same sequence
- Replies: 3
- Views: 48851
Re: Different Structures for the same sequence
Dear user, It is possible that two-runs have different results with I-TASSER server, I-TASSER depends on templates, and the template library updates every week. You can always trust the one with a higher confidence score. BTW, if the model quality is not good, it is also possible that two-runs have ...
- Fri Mar 15, 2024 2:37 am
- Forum: Main Forum
- Topic: Job confirmation email not received for C-I-TASSER, C-QUARK & Deepfold
- Replies: 3
- Views: 53713
Re: Job confirmation email not received for C-I-TASSER, C-QUARK & Deepfold
Dear Anu,
Your C-I-TASSER job IDs are CIT7972 and CIT7962, C-QUARK job IDs are QB3717 and QB3720, DeepFold job IDs are DF1540 and DF1545.
you can access the output at https://zhanggroup.org/C-I-TASSER/output/CIT7972/ as one example
Best Regards
Wei Zheng
Your C-I-TASSER job IDs are CIT7972 and CIT7962, C-QUARK job IDs are QB3717 and QB3720, DeepFold job IDs are DF1540 and DF1545.
you can access the output at https://zhanggroup.org/C-I-TASSER/output/CIT7972/ as one example
Best Regards
Wei Zheng
- Wed Mar 13, 2024 12:50 pm
- Forum: Main Forum
- Topic: Job confirmation email not received for C-I-TASSER, C-QUARK & Deepfold
- Replies: 3
- Views: 53713
Re: Job confirmation email not received for C-I-TASSER, C-QUARK & Deepfold
Dear Anu,
Please let us what email you used, and I will send you the job IDs. BTW, we found some users' emails could not receive our email for unknown reasons (I also have this issue with one of my Gmail...), so I would suggest you change to another email next time.
Best Regards
Wei Zheng
Please let us what email you used, and I will send you the job IDs. BTW, we found some users' emails could not receive our email for unknown reasons (I also have this issue with one of my Gmail...), so I would suggest you change to another email next time.
Best Regards
Wei Zheng