Search found 157 matches
- Fri Jun 25, 2021 3:21 am
- Forum: Main Forum
- Topic: cant view results
- Replies: 4
- Views: 2436
Re: cant view results
Could you provide your email address?
- Tue Jun 22, 2021 5:02 pm
- Forum: Main Forum
- Topic: Waiting for results
- Replies: 3
- Views: 2983
Re: Waiting for results
Your job id is S624035. I think your job may have failed due to a slurm error caused by a large number of jobs last week. You can submit it again.
- Mon Jun 21, 2021 5:42 pm
- Forum: Main Forum
- Topic: Processing time
- Replies: 3
- Views: 3427
Re: Processing time
Sorry! The job may have failed due to the slurm system error caused by large number of jobs last week. You can submit it again.
- Sun Jun 20, 2021 5:53 am
- Forum: Main Forum
- Topic: Can FDpred standalone version work with proteins whose length > 1,500 aa?
- Replies: 6
- Views: 5169
Re: Can FDpred standalone version work with proteins whose length > 1,500 aa?
Hi, I have a protein whose length > 1,500 aa that I want to predict a 3D structure. So I used the online ThreaDomEx to predict the protein boundary before submitting it to DEMO. However, it seems ThreaDomEx does not work anymore. I found that FDpred on the online server cannot be used for proteins ...
- Thu Jun 17, 2021 5:48 pm
- Forum: Main Forum
- Topic: How much longer does it take for I-TASSER to generate each additional .pdb file?
- Replies: 1
- Views: 2392
Re: How much longer does it take for I-TASSER to generate each additional .pdb file?
It depends on the length of the query protein and your running mode (parallel or unparallel ) for the threading and simulation. Results are usually available within 48 hours.
- Wed Jun 16, 2021 8:53 pm
- Forum: Main Forum
- Topic: RESULT MISSING UNABLE TO SUBMIT ANOTHER JOB
- Replies: 3
- Views: 2388
Re: RESULT MISSING UNABLE TO SUBMIT ANOTHER JOB
I have removed it from the list. You can resubmit it now.
- Wed Jun 16, 2021 8:48 pm
- Forum: Main Forum
- Topic: Cannot view results
- Replies: 4
- Views: 3300
Re: Cannot view results
Hi, I seem to be experiencing exactly the same problem. The last two times that I submitted a job I did not get a password or any confirmation sent to my email. The first job seem to have finished running (S623916) but I cannot view it without the password and no email has been sent. I would apprec...
- Fri Jun 11, 2021 4:35 pm
- Forum: Main Forum
- Topic: How to directly convert I-TASSER output into .pdb files
- Replies: 2
- Views: 3434
Re: How to directly convert I-TASSER output into .pdb files
seq.ss and exp.dat are the results of secondary structure prediction and solvent accessibility prediction, respectively. These two files did not include any atom coordinates. They cannot be converted to pdb files. But you can use the pymol script to show these results in the 3D model.
- Fri Jun 11, 2021 4:29 pm
- Forum: Main Forum
- Topic: Library Download Failure
- Replies: 3
- Views: 3160
Re: Library Download Failure
Please use the new script wich can be downloaded from https://zhanglab.dcmb.med.umich.edu/Bio ... lib_new.pl
- Thu Jun 10, 2021 5:28 pm
- Forum: Main Forum
- Topic: Library Download Failure
- Replies: 3
- Views: 3160
Re: Library Download Failure
You can change the line 102 in "download_lib.pl" to " system("wget -o log -c http://zhanglab.dcmb.med.umich.edu/library/nr.tar.gz") == 0 or die "System call failed: $!"; ". It will be working after the modification.