Search found 43 matches

by robpearc
Sat Jan 21, 2023 2:31 am
Forum: Main Forum
Topic: Speed up DeepFold by multiple cpu usage?
Replies: 1
Views: 5174

Re: Speed up DeepFold by multiple cpu usage?

It will speed up the MSA generation time mainly, which is usually the slowest step during modeling.
by robpearc
Tue Jan 04, 2022 12:51 am
Forum: Main Forum
Topic: Evo Design Interface Design
Replies: 1
Views: 1721

Re: Evo Design Interface Design

We apologize for the delays. We are currently working on repairing the server and hope to return your results asap!
by robpearc
Thu Oct 21, 2021 6:38 pm
Forum: Main Forum
Topic: Unable to login to download I-TASSER Suite
Replies: 2
Views: 1653

Re: Unable to login to download I-TASSER Suite

You may try to reset your password again, as the email submission should be working. If not, you may email me at robpearc@umich.edu and I will follow up again.
by robpearc
Sun Aug 08, 2021 4:25 pm
Forum: Main Forum
Topic: Threading Template
Replies: 1
Views: 1812

Re: Threading Template

I-TASSER only currently supports uploading one specified template. Although the coverage of our template library is quite extensive, so the specified PDB or a structurally similar one will most likely already be included in the library.
by robpearc
Sun Aug 08, 2021 4:07 pm
Forum: Main Forum
Topic: ResQ result doesn't show up
Replies: 1
Views: 2045

Re: ResQ result doesn't show up

Your results should be available at https://zhanggroup.org/ResQ/output/R000913/.
by robpearc
Thu Jul 22, 2021 7:27 pm
Forum: Main Forum
Topic: job S629837
Replies: 1
Views: 1976

Re: job S629837

We apologize for the delay! Your results are available at https://zhanggroup.org/I-TASSER/output/S629837/.
by robpearc
Thu Jul 22, 2021 7:24 pm
Forum: Main Forum
Topic: Job not yet received
Replies: 1
Views: 1833

Re: Job not yet received

We are currently catching up on previous jobs, which have been delayed due to a high number of jobs for a related project. Your job should be completed in the order that it was received.

Thanks!
by robpearc
Wed Jul 21, 2021 4:41 am
Forum: Main Forum
Topic: Getting information about model ranked 2 i-Tasser
Replies: 3
Views: 2563

Re: Getting information about model ranked 2 i-Tasser

The different models are generated by clustering all of the conformations produced during the folding simulations, so the templates identified for model 1 should be identical to those identified for models 2, 3, 4 etc. The other information, such as the biological function prediction may be obtained...
by robpearc
Fri Jul 16, 2021 8:01 am
Forum: Main Forum
Topic: How to explain the predicted 3D structures
Replies: 3
Views: 2388

Re: How to explain the predicted 3D structures

I'm not quite sure I understand your question. Would you be able to provide some more information on what you mean? It looks like the two sequences are different and produce different modeling results, although they share several regions with high similarity as the sequences are similar.

Thanks!
by robpearc
Fri Jul 16, 2021 7:55 am
Forum: Main Forum
Topic: Error during SPRINGDB instalaltion
Replies: 1
Views: 2929

Re: Error during SPRINGDB instalaltion

This may be an issue with f2py. Have you tried compiling the program using gfortran -static -O3 -ffast-math -lm -o NWalign NWalign.f or g77 -static -O3 -lm -o NWalign NWalign.f, which is recommended for compilation?