Search found 74 matches
- Wed Sep 06, 2023 3:01 pm
- Forum: Main Forum
- Topic: Deprecated Biolip File Downloads
- Replies: 7
- Views: 75378
Re: Deprecated Biolip File Downloads
I have uploaded that file now. Please retry download.
- Thu Aug 31, 2023 9:51 pm
- Forum: Main Forum
- Topic: Deprecated Biolip File Downloads
- Replies: 7
- Views: 75378
Re: Deprecated Biolip File Downloads
The tar files you mentioned are indeed available through the links. You probably were not able to download them due to University-wide Internet outage. Please try to download them again.
- Tue Jul 18, 2023 1:58 am
- Forum: Main Forum
- Topic: EDock
- Replies: 12
- Views: 113075
Re: EDock
x-score (http://websites.umich.edu/~shaomengwang ... are/xtool/) is a scoring function used by EDock to rank different poses.
- Wed Jun 28, 2023 1:15 pm
- Forum: Main Forum
- Topic: Questions about 3DRobot
- Replies: 2
- Views: 6986
Re: Questions about 3DRobot
3DRobot may sometimes generate less decoys than that specified by the user. This is why you receive the warning on missing decoys. Otherwise, your run looks fine.
- Mon Jun 26, 2023 11:44 am
- Forum: Main Forum
- Topic: EDock
- Replies: 12
- Views: 113075
Re: EDock
You can compress your file by zip and attach the zip archive.
- Sun Jun 04, 2023 12:45 am
- Forum: Main Forum
- Topic: On FASPR and rotamer sampling
- Replies: 2
- Views: 11999
Re: On FASPR and rotamer sampling
FASPR aims to achieve the global minimum energy configuration (GMEC) by fully deterministic algorithms, such as dead end elimination. Therefore, it is not possible to force it to generate multiple conformation. The temp variable in Search.cpp is not related to temperature annealing.
- Sun Jun 04, 2023 12:45 am
- Forum: Main Forum
- Topic: On FASPR and rotamer sampling
- Replies: 2
- Views: 11999
On FASPR and rotamer sampling
From: <l*@opnbnch.com> Date: Friday, June 2, 2023 at 14:25 Subject: On FASPR and rotamer sampling Hi Prof. Zhang, I've been really impressed with using your FASPR tool - it's very fast and generates plausible coordinates. It's been a great addition to the suite of protein structure modeling tools ou...
- Thu Jun 01, 2023 4:37 pm
- Forum: Main Forum
- Topic: Forum Registration Error
- Replies: 1
- Views: 14143
Re: Forum Registration Error
The message "The solution you provided was incorrect" was caused by the password being too weak, i.e., <6 characters, does not have numbers, or does not have both upper and lower cases. Can you explain how did you get triggers the "Invalid domain for site key" error? This is like...
- Thu Jun 01, 2023 4:36 pm
- Forum: Main Forum
- Topic: Forum Registration Error
- Replies: 1
- Views: 14143
Forum Registration Error
From: <k***@gmail.com> Date: Friday, June 2, 2023 at 00:11 To: Yang Zhang <zhang@zhanggroup.org> Subject: Forum Registration Error Hello, I am receiving errors while attempting to register for the forum and I'm wondering if you could direct me to someone who can assist. The forum help page says to c...
- Tue Apr 18, 2023 1:27 am
- Forum: Main Forum
- Topic: Receptor Chain vs Ligand Chain
- Replies: 1
- Views: 16103
Re: Receptor Chain vs Ligand Chain
Yes, that is correct.