Zhanglab forum

Dear user,

You can use -m matrix.txt to output the matrix.

Best
IT Team

Dear user,

I am slightly confused. If you want 1000 decoys with RMSD<8A, then why not set the threshold as 8A?

Best
IT Team

Dear Jim, We seem to find the issue of your case. Please find the attached updated main D-I-TASSER program. You can unzip the file and put the binary file dcasdpo4v2.1 to $pkgdir/I-TASSERmod/ (replace the old one), then re-run the main I-TASSER program, If you want to try to debug testing with the f...

Hi Jim,

Could you send me the input and output files you get for this case. I will check what's the issue.

You can either attach to this forum or send it to me by email (zhengwei@umich.edu)

BTW, for the DEP issue, please check if re-downloading the ITlib helps.

Best
IT Team

Dear user, Please download the attached zip file for MUSTER and MUSTER-related programs. 1. unzip the zip files. you will get zal1 zal2 zal3 zal33, add permission by "chmod a+x zal1 zal2 zal3 zal33" 2. go to your I-TASSER/D-I-TASSER programs path, cd bin/MUSTER/bin, backup zal33 by "m...

Dear user,

Which link on the download page did you open?

I check the readme link at https://zhanggroup.org/BioLiP/download.html

It seems I didn't get any problem. The link is https://zhanggroup.org/BioLiP/download/readme.txt

Let me know if you find any issues.

Thank you.

Best
IT Team

Dear user,

The issue has been solved.

Best
IT Team

Dear user,

We are working on it and will let you know if it is solved. Thank you for letting us know it.

Best
IT Team

Dear user,

Could you check how many lines are in your $ITlib/PDB/list file? You can use "more $ITlib/PDB/list" see the first line. Here $ITlib is your I-TASSER library path.

BTW, is that package I-TASSER? C-I-TASSER or D-I-TASSER?

Thank you.

Best
IT Team

Dear user,

Thank you for using our tools. We are glad to hear you found the issue. Let us know if you need any help in the future.

Best
IT Team