Search found 157 matches

by xiaogenz
Wed Jun 09, 2021 6:51 pm
Forum: Main Forum
Topic: Delay in processing
Replies: 3
Views: 2517

Re: Delay in processing

Sorry! We have used up all of our NSF-funded computing resources. We will move it to another computing cluster as soon as possible.
by xiaogenz
Wed Jun 09, 2021 6:45 pm
Forum: Main Forum
Topic: RESULTS MISSING
Replies: 1
Views: 1902

Re: RESULTS MISSING

Sorry. It seems that the EDock job failed due to system problems last time, you can try to resubmit it.
The COACH job failed because we ran out of computing resources in the cluster. We will move it to another cluster as soon as possible.
by xiaogenz
Sat Jun 05, 2021 4:13 pm
Forum: Main Forum
Topic: Delay in processing
Replies: 3
Views: 2517

Re: Delay in processing

Which server do you use?
by xiaogenz
Thu Jun 03, 2021 11:23 pm
Forum: Main Forum
Topic: Delay ModRefiner for protein dimer
Replies: 5
Views: 3495

Re: Delay ModRefiner for protein dimer

Sorry. Here is the results. The job was completed on May 7th. Some problems caused the email to fail.
by xiaogenz
Thu Jun 03, 2021 6:01 pm
Forum: Main Forum
Topic: Peptide Tag Folding for Homodimer
Replies: 1
Views: 1609

Re: Peptide Tag Folding for Homodimer

I think you can try to use TACOS https://zhanglab.dcmb.med.umich.edu/TACOS/
by xiaogenz
Wed Jun 02, 2021 6:47 pm
Forum: Main Forum
Topic: [3D structure require] The new protein no information of domain available
Replies: 6
Views: 13188

Re: [3D structure require] The new protein no information of domain available

I have received them. I will modeling them as soon as possilble.
by xiaogenz
Mon May 31, 2021 6:43 pm
Forum: Main Forum
Topic: [3D structure require] The new protein no information of domain available
Replies: 6
Views: 13188

Re: [3D structure require] The new protein no information of domain available

Could you send me your fasta file? I will try to modeling them using our new developed server for multi-domain protein structure prediction. The server is still under test.
by xiaogenz
Mon May 31, 2021 5:47 pm
Forum: Main Forum
Topic: [3D structure require] The new protein no information of domain available
Replies: 6
Views: 13188

Re: [3D structure require] The new protein no information of domain available

I'm sorry, I don't quite follow you.You mean you need to predict the structure of the two proteins with sequence length between 1600 and 1650?
by xiaogenz
Wed May 26, 2021 3:36 pm
Forum: Main Forum
Topic: BioLiP weekly update stopped
Replies: 2
Views: 1720

Re: BioLiP weekly update stopped

Thanks! The database has some problems since last server broken. We are sloving the problem and will fix it soon.
by xiaogenz
Mon May 24, 2021 4:38 pm
Forum: Main Forum
Topic: ModRefiner for protein dimer
Replies: 1
Views: 1822

Re: ModRefiner for protein dimer

I think you can split the monomer, and refine each monomer independently. Then merge them into one PDB file.
Or you can meger the monomer in the PDB file by rmoving "TER", and refine it use ModRefiner. Then you can modify the PDB file by adding "TER" at the end of each monomer.