Search found 157 matches

by xiaogenz
Wed Jun 08, 2022 2:16 am
Forum: Main Forum
Topic: access the result of the job submitted
Replies: 2
Views: 2930

Re: access the result of the job submitted

Which server do you use and what's the jobID? I will check for you.
by xiaogenz
Sat May 14, 2022 2:56 am
Forum: Main Forum
Topic: using cryo-em structures for modeling and docking
Replies: 1
Views: 1998

Re: using cryo-em structures for modeling and docking

You can try to use the following servers which can use cryo-EM density maps to guide the structure modelling and domain assembly:
https://zhanggroup.org/DEMO-EM/
https://zhanggroup.org/CR-I-TASSER/
by xiaogenz
Tue May 10, 2022 1:44 am
Forum: Main Forum
Topic: QUARK server job QA15513
Replies: 1
Views: 2013

Re: QUARK server job QA15513

Sorry! There is an issue of file systems on the EXPANSE cluster. We still need some time to deal with it.
by xiaogenz
Thu May 05, 2022 2:59 am
Forum: Main Forum
Topic: IonCom job 9264 not completed?
Replies: 2
Views: 2202

Re: IonCom job 9264 not completed?

Sorry! The InCom server is not working now. We are trying to repair it.
by xiaogenz
Thu May 05, 2022 2:59 am
Forum: Main Forum
Topic: IonCom jobs status
Replies: 1
Views: 2052

Re: IonCom jobs status

Sorry! The InCom server is not working now. We are trying to repair it.
by xiaogenz
Thu May 05, 2022 2:48 am
Forum: Main Forum
Topic: Differences in the predictions by I-TASSER web server and standalone package
Replies: 5
Views: 5820

Re: Differences in the predictions by I-TASSER web server and standalone package

sambitmishra wrote: Mon Apr 25, 2022 4:55 pm Hi there,

Also wanted to ask: Does the I-TASSER webserver set the command line option -light to True when running calculations?

Thanks,
Sambit.
Thank you! The I-TASSER server uses the standard version rather than the light version.
by xiaogenz
Thu May 05, 2022 2:39 am
Forum: Main Forum
Topic: Differences in the predictions by I-TASSER web server and standalone package
Replies: 5
Views: 5820

Re: Differences in the predictions by I-TASSER web server and standalone package

Hello, I'm from the NIH HPC team and Sambit also raised this issue with us. So is there a way around the issue? If we separately obtain HHsearch, can we set it up so that LOMETS uses it? And is there anything else we could set up separately? thanks and regards Afif Hi, Yes! You can search the templ...
by xiaogenz
Thu May 05, 2022 1:50 am
Forum: Main Forum
Topic: Pending job
Replies: 1
Views: 4393

Re: Pending job

Which server did you use? I will check it for you.
by xiaogenz
Sat Jan 08, 2022 1:01 am
Forum: Main Forum
Topic: COFACTOR Query (Delayed?)
Replies: 9
Views: 4774

Re: COFACTOR Query (Delayed?)

Sorry! Our computer cluster is not stable now, while our system admin is still on vacation. We will solve the problem as soon as possible.
by xiaogenz
Sat Jan 08, 2022 12:57 am
Forum: Main Forum
Topic: COTH Input Query
Replies: 2
Views: 2352

Re: COTH Input Query

Sorry! The COTH server currently cannot upload templates. You may try to use I-TASSER to build the monomer models, and then input the HDOCK server (http://hdock.phys.hust.edu.cn/) for docking.