Zhanglab forum

Dear user,

could you post your download_lib.pl as an attached file?

Thank you.

Best Regards
Wei Zheng

Dear user,

We had a weekly library update issue last week, so we are fixing the server issue now, it seems your job also be affected by this library issue. We hope this issue can be solved in next week. Thank you.

Best
IT Team

Dear user, We have released a new version of DMFold (v1.1) and DeepMSA2 (v2.1) that fix several small issues. you can download them from https://zhanggroup.org/DMFold/ https://zhanggroup.org/DeepMSA2/ We also found a library update issue on Feb 2, so if you downloaded the I-TASSER series standalone ...

Dear user, It may be caused by library issues, We found a library update issue on Feb 2, if you downloaded the I-TASSER series standalone packages (I-TASSER, C-I-TASSER, D-I-TASSER, C-QUARK, etc) after Feb 2, please remove the summary* MTX and PDB folders in ITlib folder and re-download the library ...

Dear user,

Please see if this ticket can help you viewtopic.php?f=3&t=721&p=1314&hilit=za ... 3bab#p1314

Best
IT Team

Dear user, Sorry for the late reply, we have tested your sequences and found the issue. Now new versions of DeepMSA2 (v2.1) and DMFold (v1.1) have been online, we have fixed a couple of issues including the one you find. Thank you. https://zhanggroup.org/DMFold/download https://zhanggroup.org/DeepMS...

Dear user, It is difficult to say the exact running time because different device running time is different. So I would suggest you test the program on your own cluster. Normally MSA will take less than 1 day if you have enough CPUs and modeling will take less than 1 day (<1000AA) if you have enough...

Dear user,

The residue level pLDDT should be available in the download model file, see the beta factor column in the PDB file.

Best Regards
Wei Zheng

Dear user, we do not have any statistical data about dimmer, but we have data with protein length with DMFold server https://zhanggroup.org/DMFold/help.html Notice, that is our server running time which should differ from the local version (without pending time), so typically standalone should be mu...

Dear user,

C-QUARK jobs have been completed, you can assess them by

https://zhanggroup.org/C-QUARK/output/QB3559/
https://zhanggroup.org/C-QUARK/output/QB3617/

Your FG-MD and EvoDesign jobs have been canceled, now you can submit new jobs.

Best Regards
IT Team