Search found 28 matches
- Sat May 21, 2022 3:45 pm
- Forum: Main Forum
- Topic: Regarding the second iteration of the TASSER program in the I-TASSER standalone
- Replies: 2
- Views: 471
Re: Regarding the second iteration of the TASSER program in the I-TASSER standalone
The second round of simulation is performed by I-TASSERmod/EMrefinement.pl which is called by line 1915 of I-TASSERmod/runI-TASSER.pl
- Tue Apr 19, 2022 6:35 pm
- Forum: Main Forum
- Topic: Differences in the predictions by I-TASSER web server and standalone package
- Replies: 5
- Views: 935
Re: Differences in the predictions by I-TASSER web server and standalone package
The online web server contains some component that we unfortunately cannot redistribute with the standalone package due to license issue. For example, the template identification by LOMETS uses HHsearch, which is only used by web server but not standalone package. In most cases, this does not have a...
- Sun Apr 17, 2022 12:59 am
- Forum: Main Forum
- Topic: Job is not complete
- Replies: 1
- Views: 413
Re: Job is not complete
According to our system record, job S680633 is already deleted by the user. Please also note that the estimated queue time is only a very rough approximation. It is very possible that some proteins would take longer than expected, e.g. due to heavy load of the supercomputer cluster. In your case, yo...
- Wed Apr 13, 2022 4:40 pm
- Forum: Main Forum
- Topic: iTASSER job remains in queue ??
- Replies: 3
- Views: 845
Re: iTASSER job remains in queue ??
Your jobs should have been completed a few days ago at https://zhanggroup.org/I-TASSER/output/S679460/
- Wed Apr 13, 2022 4:39 pm
- Forum: Main Forum
- Topic: Job is not completing
- Replies: 2
- Views: 490
Re: Job is not completing
Your job should have been completed a few days ago at https://zhanggroup.org/I-TASSER/output/S679460/
- Sat Apr 09, 2022 6:48 pm
- Forum: Main Forum
- Topic: Job is not completing
- Replies: 2
- Views: 490
Re: Job is not completing
The job you just submitted 2 days ago does not seem to have particular issue. Your protein is long (891 residues). So it will take time to complete it. THe queue information is just a very rough estimate.
- Tue Mar 29, 2022 5:30 pm
- Forum: Main Forum
- Topic: Generate Protein
- Replies: 8
- Views: 3997
Re: Generate Protein
If the DNA contains an ORF, you may use ExPASy translate (https://web.expasy.org/translate/) to obtain the translated protein sequence from DNA. If your DNA is in NCBI, it should have annotations of translated protein sequences in its GenBank format.
- Tue Mar 29, 2022 5:27 pm
- Forum: Main Forum
- Topic: COACH job still pending
- Replies: 6
- Views: 1090
Re: COACH job still pending
Dear all, the COACH server is currently heavily loaded due to I/O issues. We are working on resolving the issues and apologize for any inconveniences this causes.
- Thu Mar 24, 2022 5:56 pm
- Forum: Main Forum
- Topic: converting .sdf files to .pdb/.pdbqt
- Replies: 1
- Views: 409
Re: converting .sdf files to .pdb/.pdbqt
We are not maintainer or developer of OpenBabel and are not entitled to assist you with the issue. You should ask your questions at http://openbabel.org/wiki/Help
- Wed Mar 23, 2022 2:22 pm
- Forum: Main Forum
- Topic: BioLiP coordinates
- Replies: 2
- Views: 436
Re: BioLiP coordinates
If you need to download BioLiP dataset, you may want to use https://zhanggroup.org/BioLiP/download.html rather than "browse".