Search found 27 matches

by zcx@umich.edu
Sat Mar 19, 2022 3:38 pm
Forum: Main Forum
Topic: COFACTOR Query (Delayed?)
Replies: 9
Views: 1681

Re: COFACTOR Query (Delayed?)

I checked your email sabrina*@uga.edu. Its latest job submission was the job submitted on 2021-12-05 mentioned above. In fact, there is no job submission from @uga.edu on March 14 based on our system record.
by zcx@umich.edu
Tue Mar 15, 2022 1:29 pm
Forum: Main Forum
Topic: I-TASSER no result/update received
Replies: 1
Views: 413

Re: I-TASSER no result/update received

The only job submitted on March 13 by you is 13545 S675386-> LEA( 13) m*@student.usm.my 60.49.110.64 Sun Mar 13 09:44:59 EDT 2022 MDAKDGLKEKAGE It was already completed at https://zhanggroup.org/I-TASSER/output/S675386/. In general, you can search your active jobs at https://zhanggroup.org/I-TASSER/...
by zcx@umich.edu
Tue Mar 15, 2022 11:54 am
Forum: Main Forum
Topic: COFACTOR Query (Delayed?)
Replies: 9
Views: 1681

Re: COFACTOR Query (Delayed?)

You should have received an email within 15 minutes after the submission to confirm your job , and another upon job completion. If you did not receive the email, most likely it was sorted into your spam mail box.
by zcx@umich.edu
Fri Mar 11, 2022 11:19 pm
Forum: Main Forum
Topic: COACH job still pending
Replies: 6
Views: 1083

Re: COACH job still pending

I have manually restarted job CH2099407192. If you still cannot get your result next week, please let us know.
by zcx@umich.edu
Fri Mar 11, 2022 11:13 pm
Forum: Main Forum
Topic: COFACTOR Query (Delayed?)
Replies: 9
Views: 1681

Re: COFACTOR Query (Delayed?)

The last job you submitted was
MCF9006 s****@uga.edu 2021-12-05 20:50:01.311277 529 TcINO1
which is more than three months ago. We only retain your data ranging from 1 to 3 months due to limited disk space.
by zcx@umich.edu
Mon Nov 29, 2021 1:43 am
Forum: Main Forum
Topic: parsing TM-align output to report protein domain PAV and coords
Replies: 3
Views: 830

Re: parsing TM-align output to report protein domain PAV and coords

6. The default value of -a is F. Whether or not -a is F, TM-align can return result even if Length(Full_length.pdb)<Length(QUERY1.pdb). Therefore, there is not need for you to set it to a non-default value. 7. No, TM-align will not refuse to report an alignment even if the TM-score is very low, unle...
by zcx@umich.edu
Sun Nov 28, 2021 11:56 am
Forum: Main Forum
Topic: parsing TM-align output to report protein domain PAV and coords
Replies: 3
Views: 830

Re: parsing TM-align output to report protein domain PAV and coords

[1] Pfam is not defined based on tertiary structures. To check if a protein sequence contains a pfam domain, you should use hmmsearch or hmmscan from HMMER to align the sequence and the HMM of the pfam family. TM-align can tell you whether your protein structure model is structurally similar to the ...