Search found 139 matches

by xiaogenz
Thu Dec 09, 2021 9:07 pm
Forum: Main Forum
Topic: Issue with MM-align on-line
Replies: 1
Views: 571

Re: Issue with MM-align on-line

You can download the standalone package and run it locally. Here is my result. Please let me know if you have any questions.
by xiaogenz
Thu Dec 09, 2021 8:03 pm
Forum: Main Forum
Topic: Output files from EDTSurf
Replies: 1
Views: 523

Re: Output files from EDTSurf

Please use the option "-s 0" to generated the ".dep" files. Please let me know if you have any questions.
by xiaogenz
Mon Dec 06, 2021 3:48 am
Forum: Main Forum
Topic: Can't retrieve QUARK results
Replies: 1
Views: 622

Re: Can't retrieve QUARK results

Could you please provide your job ID?
by xiaogenz
Thu Dec 02, 2021 3:14 pm
Forum: Main Forum
Topic: Need help in my protein structure modelling
Replies: 1
Views: 651

Re: Need help in my protein structure modelling

You can try to use our I-TASSER improved versions, which integrate deep-learning predicted spatial restraints.
C-I-TASSER: https://zhanggroup.org/C-I-TASSER/
I-TASSER-MD: https://zhanggroup.org/I-TASSER-MD/
D-I-TASSER: https://zhanggroup.org/D-I-TASSER/
by xiaogenz
Wed Dec 01, 2021 5:21 am
Forum: Main Forum
Topic: access BioLip data / peptide information
Replies: 7
Views: 1354

Re: access BioLip data / peptide information

You can download at https://zhanggroup.org/BioLiP/download/ ... 16_154.csv. Please download it as soon as possible as it will be automatically removed soon.
by xiaogenz
Tue Nov 30, 2021 5:59 am
Forum: Main Forum
Topic: access BioLip data / peptide information
Replies: 7
Views: 1354

Re: access BioLip data / peptide information

We have had a problem updating the SQL library recently. We will provide the data after solving the problem.
by xiaogenz
Thu Nov 25, 2021 2:10 am
Forum: Main Forum
Topic: Estimated time for STRUM job completion
Replies: 3
Views: 1452

Re: Estimated time for STRUM job completion

The link for SIFT download is not available. I have created a link at https://zhanggroup.org/STRUM/download/sift4.0.3b.tar.gz for download.
by xiaogenz
Thu Nov 25, 2021 1:57 am
Forum: Main Forum
Topic: access BioLip data / peptide information
Replies: 7
Views: 1354

Re: access BioLip data / peptide information

You can download the library through a script named "download_all_sets.pl" on the webpage (https://zhanggroup.org/BioLiP/weekly.html).
by xiaogenz
Wed Nov 24, 2021 1:40 am
Forum: Main Forum
Topic: Job stuck running for 10 days, Job ID S653201
Replies: 3
Views: 3727

Re: Job stuck running for 10 days, Job ID S653201

Sorry! The data was removed as we usually keep them for two months. You can submit it again.
by xiaogenz
Wed Nov 24, 2021 1:37 am
Forum: Main Forum
Topic: Problem with predicted models
Replies: 3
Views: 909

Re: Problem with predicted models

You can send us through the attachment.