Search found 139 matches

by xiaogenz
Fri Nov 05, 2021 5:25 pm
Forum: Main Forum
Topic: Missing files in the COFACTOR EC library
Replies: 4
Views: 763

Re: Missing files in the COFACTOR EC library

Sorry! The link should be https://zhanggroup.org/BioLiP/download/ ... e2.tar.bz2
Please try it again. I think the error will be removed after updating the library.
by xiaogenz
Thu Nov 04, 2021 9:44 pm
Forum: Main Forum
Topic: Missing files in the COFACTOR EC library
Replies: 4
Views: 763

Re: Missing files in the COFACTOR EC library

This is because some proteins are removed from the library as they have no function annotations (or they had function annotations before but were removed later). You can ignore the "error" since it will not affect the final result. However, you can download the completed Enzyme library to ...
by xiaogenz
Wed Nov 03, 2021 3:16 am
Forum: Main Forum
Topic: Modelling trimers
Replies: 1
Views: 632

Re: Modelling trimers

Currently, we just have a method for dimer modeling (https://zhanggroup.org/TACOS/). You can try to use Rosetta symmetry docking. You can also use Modeller if you have good trimer templates.
by xiaogenz
Mon Nov 01, 2021 6:07 pm
Forum: Main Forum
Topic: Job Stuck running for over 10 days Job I.D. is S651844
Replies: 1
Views: 577

Re: Job Stuck running for over 10 days Job I.D. is S651844

Sorry, there is a problem with the data transition between two clusters. I have manually copy the data and we are fixing the problem now.
Here is the link to the results: https://zhanggroup.org/I-TASSER/output/S651844/
by xiaogenz
Fri Oct 29, 2021 6:23 pm
Forum: Main Forum
Topic: Job stuck?
Replies: 6
Views: 1196

Re: Job stuck?

I have manually copied the data to the cluster. Here is the link to your results https://zhanggroup.org/I-TASSER/output/S650938/
by xiaogenz
Fri Oct 29, 2021 6:08 pm
Forum: Main Forum
Topic: Job stuck?
Replies: 6
Views: 1196

Re: Job stuck?

Sorry, there is a problem with the data transition between two clusters. Here are the final models. Please let me know if you need more information.
by xiaogenz
Thu Oct 28, 2021 6:37 pm
Forum: Main Forum
Topic: Library installation error
Replies: 12
Views: 3746

Re: Library installation error

Please download the newest "ligand.tar.bz2" updated on Oct 27, 2021. I have tested it and successfully uncompressed it. If the problem still persists, please manually download "ligand.tar.bz2" at "http://zhanglab.dcmb.med.umich.edu/BioLiP/download/COACH_lib/COFACTOR/ligand.t...
by xiaogenz
Tue Oct 26, 2021 1:14 am
Forum: Main Forum
Topic: Job stuck?
Replies: 6
Views: 1196

Re: Job stuck?

The job is still running. It is expected to be finished soon as the simulation step is running now.
by xiaogenz
Wed Oct 20, 2021 12:34 am
Forum: Main Forum
Topic: EDock result
Replies: 3
Views: 811

Re: EDock result

Here is the data.
by xiaogenz
Mon Oct 18, 2021 7:36 pm
Forum: Main Forum
Topic: Unable to login to download I-TASSER Suite
Replies: 2
Views: 756

Re: Unable to login to download I-TASSER Suite

Sorry! I have contacted our administrator to check this problem.
You can also try to download our C-I-TASSER suite, which is an improved version of I-TASSER using deep-learning predicted contact.
https://zhanggroup.org/C-I-TASSER/