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- Sun Nov 28, 2021 11:56 am
- Forum: Main Forum
- Topic: parsing TM-align output to report protein domain PAV and coords
- Replies: 3
- Views: 2841
Re: parsing TM-align output to report protein domain PAV and coords
[1] Pfam is not defined based on tertiary structures. To check if a protein sequence contains a pfam domain, you should use hmmsearch or hmmscan from HMMER to align the sequence and the HMM of the pfam family. TM-align can tell you whether your protein structure model is structurally similar to the ...