Search found 139 matches

by xiaogenz
Fri May 07, 2021 6:24 pm
Forum: Main Forum
Topic: Can't access the i-TASSER results
Replies: 2
Views: 1013

Re: Can't access the i-TASSER results

Here is the result page.
https://zhanglab.dcmb.med.umich.edu/I-T ... 97/vys8jk/
And please check whether the email has been intercepted.
by xiaogenz
Fri May 07, 2021 6:11 pm
Forum: Main Forum
Topic: Protein-Ligand Complex Not Available in I-TASSER Output
Replies: 1
Views: 795

Re: Protein-Ligand Complex Not Available in I-TASSER Output

Sorry. There is someting wrong when generate the result page. I have modified the link. You can download them now. Aslo, the results are included in the file named 'S613036_results.tar.bz2'. You can click the link below the title of the page to download it.
by xiaogenz
Thu May 06, 2021 9:09 pm
Forum: Main Forum
Topic: -runstyle gnuparallel only uses one core
Replies: 1
Views: 886

Re: -runstyle gnuparallel only uses one core

Thank you! As I know, our program curreenly does not support GNU parallel. In our computer cluster, we use SLURM Workload Manager (https://slurm.schedmd.com) for parallel jobs processing.
by xiaogenz
Wed May 05, 2021 7:03 pm
Forum: Main Forum
Topic: Notification of job completion, still in process
Replies: 3
Views: 936

Re: Notification of job completion, still in process

Here is the result.
by xiaogenz
Wed May 05, 2021 5:47 pm
Forum: Main Forum
Topic: Notification of job completion, still in process
Replies: 3
Views: 936

Re: Notification of job completion, still in process

Sorry, there may be a problem with the script for result page generation. I just confirmed that your job was actually complete. But I don't know how to send the result to you.
by xiaogenz
Wed May 05, 2021 5:37 pm
Forum: Main Forum
Topic: Library installation error
Replies: 12
Views: 3748

Re: Library installation error

Our FTP server is not working now which results in the problem of database downloading. You can change the line 102 in "download_lib.pl" to " system("wget -o log -c http://zhanglab.ccmb.med.umich.edu/library/nr.tar.gz") == 0 or die "System call failed: $!"; "....
by xiaogenz
Fri Apr 30, 2021 3:19 am
Forum: Main Forum
Topic: I-tasser showing different secondary structure in 3D model
Replies: 1
Views: 779

Re: I-tasser showing different secondary structure in 3D model

I think this is normal because the predicted secondary structure is not completely correct. The simulation will correct some unreasonable regions according to the template information and the energy, which reults in the secondary structure in the final model is different from the predicted one.
by xiaogenz
Fri Apr 30, 2021 3:14 am
Forum: Main Forum
Topic: OS for I-Tasser Suite
Replies: 1
Views: 933

Re: OS for I-Tasser Suite

As I know, the I-TASSER suite is suitable for only Linux OS.
by xiaogenz
Sun Apr 25, 2021 7:46 pm
Forum: Main Forum
Topic: Does SPRING outcome only contain C-alpha?
Replies: 2
Views: 1208

Re: Does SPRING outcome only contain C-alpha?

Yes, you can use FASPR (https://zhanglab.dcmb.med.umich.edu/FASPR/) to quickly generate the side-chain of each protein chain independently.