Search found 157 matches

by xiaogenz
Tue Jul 06, 2021 5:50 pm
Forum: Main Forum
Topic: Processing time for GPCR-I-TASSER
Replies: 1
Views: 1452

Re: Processing time for GPCR-I-TASSER

Sorry. The GPCR-I-TASEER is not working due to the internal problem. You can try to use C-I-TASSER (https://zhanglab.dcmb.med.umich.edu/C-I-TASSER/) which also has a good performance on GPCR structure prediction.
by xiaogenz
Tue Jul 06, 2021 5:41 pm
Forum: Main Forum
Topic: waiting for the results
Replies: 5
Views: 2511

Re: waiting for the results

It seems it finished on June 27. But there is a problem with the data transfer between our clusters. I have attached the predicted models and C-score. Please let me know if you need more results.
by xiaogenz
Thu Jul 01, 2021 2:56 pm
Forum: Main Forum
Topic: Batch prediction 3D structure
Replies: 1
Views: 1514

Re: Batch prediction 3D structure

You can download our standalone package to run it locally if you have many targets.
by xiaogenz
Tue Jun 29, 2021 6:03 am
Forum: Main Forum
Topic: Processing time
Replies: 3
Views: 1736

Re: Processing time

The job may failed due to out of the time limit in the cluster. I have contacted the administor to deal with the problem.
by xiaogenz
Sat Jun 26, 2021 5:01 pm
Forum: Main Forum
Topic: I can't for submitting a new job
Replies: 3
Views: 2265

Re: I can't for submitting a new job

You can remove your failed job through https://zhanglab.dcmb.med.umich.edu/I-T ... emove.html
by xiaogenz
Fri Jun 25, 2021 2:21 pm
Forum: Main Forum
Topic: More than 750 residues?
Replies: 3
Views: 2361

Re: More than 750 residues?

The I-TASSER server can predict proteins with up to 1500 residues. You can also try to use our recent developed pipeline https://zhanglab.dcmb.med.umich.edu/I-TASSER-MDA/ for multi-domain proteins.
by xiaogenz
Fri Jun 25, 2021 2:18 pm
Forum: Main Forum
Topic: Waiting for results
Replies: 3
Views: 2285

Re: Waiting for results

by xiaogenz
Fri Jun 25, 2021 2:13 pm
Forum: Main Forum
Topic: Can FDpred standalone version work with proteins whose length > 1,500 aa?
Replies: 6
Views: 4033

Re: Can FDpred standalone version work with proteins whose length > 1,500 aa?

The job is still in processing. As you select to predict the protein function, the required time are doubled.
by xiaogenz
Fri Jun 25, 2021 3:37 am
Forum: Main Forum
Topic: Distance restraints for I-TASSER Problem
Replies: 3
Views: 1721

Re: Distance restraints for I-TASSER Problem

One possible reason is that the weight of your provided distance constraint is less than that of the I-TASSER potential, since you just provided one residue pair.
by xiaogenz
Fri Jun 25, 2021 3:26 am
Forum: Main Forum
Topic: About the Predicted Model
Replies: 1
Views: 4190

Re: About the Predicted Model

Could you edit the PDB file to remove them?