Search found 157 matches

by xiaogenz
Fri Jun 25, 2021 3:21 am
Forum: Main Forum
Topic: cant view results
Replies: 4
Views: 2082

Re: cant view results

Could you provide your email address?
by xiaogenz
Tue Jun 22, 2021 5:02 pm
Forum: Main Forum
Topic: Waiting for results
Replies: 3
Views: 2230

Re: Waiting for results

Your job id is S624035. I think your job may have failed due to a slurm error caused by a large number of jobs last week. You can submit it again.
by xiaogenz
Mon Jun 21, 2021 5:42 pm
Forum: Main Forum
Topic: Processing time
Replies: 3
Views: 2860

Re: Processing time

Sorry! The job may have failed due to the slurm system error caused by large number of jobs last week. You can submit it again.
by xiaogenz
Sun Jun 20, 2021 5:53 am
Forum: Main Forum
Topic: Can FDpred standalone version work with proteins whose length > 1,500 aa?
Replies: 6
Views: 3938

Re: Can FDpred standalone version work with proteins whose length > 1,500 aa?

Hi, I have a protein whose length > 1,500 aa that I want to predict a 3D structure. So I used the online ThreaDomEx to predict the protein boundary before submitting it to DEMO. However, it seems ThreaDomEx does not work anymore. I found that FDpred on the online server cannot be used for proteins ...
by xiaogenz
Thu Jun 17, 2021 5:48 pm
Forum: Main Forum
Topic: How much longer does it take for I-TASSER to generate each additional .pdb file?
Replies: 1
Views: 1999

Re: How much longer does it take for I-TASSER to generate each additional .pdb file?

It depends on the length of the query protein and your running mode (parallel or unparallel ) for the threading and simulation. Results are usually available within 48 hours.
by xiaogenz
Wed Jun 16, 2021 8:53 pm
Forum: Main Forum
Topic: RESULT MISSING UNABLE TO SUBMIT ANOTHER JOB
Replies: 3
Views: 1911

Re: RESULT MISSING UNABLE TO SUBMIT ANOTHER JOB

I have removed it from the list. You can resubmit it now.
by xiaogenz
Wed Jun 16, 2021 8:48 pm
Forum: Main Forum
Topic: Cannot view results
Replies: 4
Views: 2693

Re: Cannot view results

Hi, I seem to be experiencing exactly the same problem. The last two times that I submitted a job I did not get a password or any confirmation sent to my email. The first job seem to have finished running (S623916) but I cannot view it without the password and no email has been sent. I would apprec...
by xiaogenz
Fri Jun 11, 2021 4:35 pm
Forum: Main Forum
Topic: How to directly convert I-TASSER output into .pdb files
Replies: 2
Views: 2920

Re: How to directly convert I-TASSER output into .pdb files

seq.ss and exp.dat are the results of secondary structure prediction and solvent accessibility prediction, respectively. These two files did not include any atom coordinates. They cannot be converted to pdb files. But you can use the pymol script to show these results in the 3D model.
by xiaogenz
Fri Jun 11, 2021 4:29 pm
Forum: Main Forum
Topic: Library Download Failure
Replies: 3
Views: 2507

Re: Library Download Failure

Please use the new script wich can be downloaded from https://zhanglab.dcmb.med.umich.edu/Bio ... lib_new.pl
by xiaogenz
Thu Jun 10, 2021 5:28 pm
Forum: Main Forum
Topic: Library Download Failure
Replies: 3
Views: 2507

Re: Library Download Failure

You can change the line 102 in "download_lib.pl" to " system("wget -o log -c http://zhanglab.dcmb.med.umich.edu/library/nr.tar.gz") == 0 or die "System call failed: $!"; ". It will be working after the modification.