IonCom - Missing Probabilities for Predicted Binding Sites

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saakdr@missouri.edu
Posts: 1
Joined: Sat Aug 31, 2024 3:52 am

IonCom - Missing Probabilities for Predicted Binding Sites

Post by saakdr@missouri.edu »

Hello,

Could you please let me know how to retrieve the predicted probabilities for the residues of the input sequence?
Here is the link to my job:
https://seq2fun.dcmb.med.umich.edu//Ion ... put/12883/

And here is the link to the example output shared on the IonCom tool website, which includes probabilities and other details:
https://zhanggroup.org/IonCom/example/

However, when I run the IonCom tool, I only get binding and non-binding sites.

Best regards,
Saladin Alqarghuli
PhD Candidate
University of Missouri
Electrical Engineering and Computer Science Department
Attachments
Example job - probabilities are included.
Example job - probabilities are included.
example job.jpg (162.94 KiB) Viewed 3630 times
My job - No prababilities included.
My job - No prababilities included.
My job.jpg (84.76 KiB) Viewed 3630 times
XiZhang
Posts: 21
Joined: Tue May 04, 2021 5:06 pm

Re: IonCom - Missing Probabilities for Predicted Binding Sites

Post by XiZhang »

Dear user,

Thank you for using our server. You can find the probabilities for predicted binding sites through https://seq2fun.dcmb.med.umich.edu//Ion ... rob_zn.txt

Best,
Xi
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