I-TASSER standalone errors

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harvey@bucknell.edu
Posts: 4
Joined: Tue Mar 19, 2024 6:11 pm

I-TASSER standalone errors

Post by harvey@bucknell.edu »

I have been trying to get I-TASSER standalone working on a Rocky Linux 8 SLURM cluster. I've been able to run the included example with some success, but a few of the threading processes fail with the following errors:

err_MUSTER_example2
::::::::::::::
slurmstepd: error: couldn't chdir to `/tmp/harvey/ITexample2': No such file or directory: going to /tmp instead
slurmstepd: error: couldn't chdir to `/tmp/harvey/ITexample2': No such file or directory: going to /tmp instead
Illegal division by zero at /cm/local/apps/slurm/var/spool/job95404/slurm_script line 599.
::::::::::::::

err_wdPPAS_example2
::::::::::::::
slurmstepd: error: couldn't chdir to `/tmp/harvey/ITexample2': No such file or directory: going to /tmp instead
slurmstepd: error: couldn't chdir to `/tmp/harvey/ITexample2': No such file or directory: going to /tmp instead
Exception in thread "main" java.lang.NumberFormatException: For input string: "-NAN."
at sun.misc.FloatingDecimal.readJavaFormatString(FloatingDecimal.java:2043)
at sun.misc.FloatingDecimal.parseFloat(FloatingDecimal.java:122)
at java.lang.Float.parseFloat(Float.java:451)
at java.lang.Float.valueOf(Float.java:416)
at c.a(c.java)
at c.main(c.java)
::::::::::::::
err_wMUSTER_example2
::::::::::::::
slurmstepd: error: couldn't chdir to `/tmp/harvey/ITexample2': No such file or directory: going to /tmp instead
slurmstepd: error: couldn't chdir to `/tmp/harvey/ITexample2': No such file or directory: going to /tmp instead
Exception in thread "main" java.lang.NumberFormatException: For input string: "-NAN."
at sun.misc.FloatingDecimal.readJavaFormatString(FloatingDecimal.java:2043)
at sun.misc.FloatingDecimal.parseFloat(FloatingDecimal.java:122)
at java.lang.Float.parseFloat(Float.java:451)
at java.lang.Float.valueOf(Float.java:416)
at e.a(e.java)
at e.main(e.java)
::::::::::::::


I've seen these errors referenced elsewhere in this forum, but have not seen a solution.

Could anyone provide advice on how to proceed?
harvey@bucknell.edu
Posts: 4
Joined: Tue Mar 19, 2024 6:11 pm

Re: I-TASSER standalone errors

Post by harvey@bucknell.edu »

I believe I have solved the "division by zero" issue by replacing zal* binaries as described in another thread.

I am still, however, seeing the java errors
harvey@bucknell.edu
Posts: 4
Joined: Tue Mar 19, 2024 6:11 pm

***Need developer help*** I-TASSER standalone errors

Post by harvey@bucknell.edu »

Are any devs able to provide insight on my issues?
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