Library installation error

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jlspzw
Posts: 114
Joined: Tue May 04, 2021 5:04 pm

Re: Library installation error

Post by jlspzw »

if the following files exist in the nr folder, the nr database may complete

drwxr-xr-x 2 zhengwei zhanglabs 32 Dec 4 2013 .
drwxr-xr-x 20 zhengwei zhanglabs 25 Jan 7 2021 ..
-rwxr-xr-x 1 zhengwei zhanglabs 3730268192 Dec 4 2013 nr
-rwxr-xr-x 1 zhengwei zhanglabs 96217791 Dec 4 2013 nr.00.phr
-rwxr-xr-x 1 zhengwei zhanglabs 23348080 Dec 4 2013 nr.00.pin
-rwxr-xr-x 1 zhengwei zhanglabs 23348016 Dec 4 2013 nr.00.pnd
-rwxr-xr-x 1 zhengwei zhanglabs 91252 Dec 4 2013 nr.00.pni
-rwxr-xr-x 1 zhengwei zhanglabs 44 Dec 4 2013 nr.00.psi
-rwxr-xr-x 1 zhengwei zhanglabs 1002918305 Dec 4 2013 nr.00.psq
-rwxr-xr-x 1 zhengwei zhanglabs 97048268 Dec 4 2013 nr.01.phr
-rwxr-xr-x 1 zhengwei zhanglabs 23526928 Dec 4 2013 nr.01.pin
-rwxr-xr-x 1 zhengwei zhanglabs 23526864 Dec 4 2013 nr.01.pnd
-rwxr-xr-x 1 zhengwei zhanglabs 91948 Dec 4 2013 nr.01.pni
-rwxr-xr-x 1 zhengwei zhanglabs 0 Dec 4 2013 nr.01.psd
-rwxr-xr-x 1 zhengwei zhanglabs 44 Dec 4 2013 nr.01.psi
-rwxr-xr-x 1 zhengwei zhanglabs 1002940853 Dec 4 2013 nr.01.psq
-rwxr-xr-x 1 zhengwei zhanglabs 92279516 Dec 4 2013 nr.02.phr
-rwxr-xr-x 1 zhengwei zhanglabs 22370856 Dec 4 2013 nr.02.pin
-rwxr-xr-x 1 zhengwei zhanglabs 22370792 Dec 4 2013 nr.02.pnd
-rwxr-xr-x 1 zhengwei zhanglabs 87436 Dec 4 2013 nr.02.pni
-rwxr-xr-x 1 zhengwei zhanglabs 0 Dec 4 2013 nr.02.psd
-rwxr-xr-x 1 zhengwei zhanglabs 44 Dec 4 2013 nr.02.psi
-rwxr-xr-x 1 zhengwei zhanglabs 1002796162 Dec 4 2013 nr.02.psq
-rwxr-xr-x 1 zhengwei zhanglabs 51613155 Dec 4 2013 nr.03.phr
-rwxr-xr-x 1 zhengwei zhanglabs 12512344 Dec 4 2013 nr.03.pin
-rwxr-xr-x 1 zhengwei zhanglabs 12512280 Dec 4 2013 nr.03.pnd
-rwxr-xr-x 1 zhengwei zhanglabs 48924 Dec 4 2013 nr.03.pni
-rwxr-xr-x 1 zhengwei zhanglabs 0 Dec 4 2013 nr.03.psd
-rwxr-xr-x 1 zhengwei zhanglabs 44 Dec 4 2013 nr.03.psi
-rwxr-xr-x 1 zhengwei zhanglabs 541071539 Dec 4 2013 nr.03.psq
-rwxr-xr-x 1 zhengwei zhanglabs 118 Dec 4 2013 nr.pal
-rwxr-xr-x 1 zhengwei zhanglabs 0 Dec 4 2013 nr.psd
Jaycarrick2000
Posts: 1
Joined: Wed Nov 10, 2021 8:31 pm

Re: Library installation error

Post by Jaycarrick2000 »

So glad I found this, I've been search for a solution all over the net
jed
Posts: 5
Joined: Mon Oct 25, 2021 3:32 am

Re: Library installation error

Post by jed »

Thank you for the info.
Here is a snapshot of my nr folder. But I don't understand this part:
"The issue major occurs after this step "$blastdir/blastpgp -b 1000 -j 3 -h 0.001 -d $db -i protein.fasta -C psitmp.chk -Q pssm.txt > blast.out"
you can add the command before this line

print "$blastdir/blastpgp -b 1000 -j 3 -h 0.001 -d $db -i protein.fasta -C psitmp.chk -Q pssm.txt > blast.out\n";"

May I ask what command should I add? When I add the
print "$blastdir/blastpgp -b 1000 -j 3 -h 0.001 -d $db -i protein.fasta -C psitmp.chk -Q pssm.txt > blast.out\n";


It prints this message:
/home/jed/I-TASSER5.1/blast/bin/blastpgp -b 1000 -j 3 -h 0.001 -d /home/cbc-lindert-group2/data/he.1944/ITLIB/nr -i protein.fasta -C psitmp.chk -Q pssm.txt > blast.out
/home/jed/I-TASSER5.1/blast/bin/blastpgp is not working properly, please check
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