Zhanglab forum • errors in the deepmsa code

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errors in the deepmsa code

Posted: Mon May 10, 2021 9:32 am

by yuieroqreqw

The parameter s in line 50 of kclust2db.py script in the software code of deepmsa you provided is not used, so ask if this is an error

Re: errors in the deepmsa code

Posted: Tue May 11, 2021 12:50 am

by xiaogenz

This is not an error. s is a default parameter as we only use the the sequence identity (seqID) cutoff of 30%. s=1.12 equals to the seqID = 30%.

Re: errors in the deepmsa code

Posted: Tue May 11, 2021 1:21 am

by yuieroqreqw

ok, Thanks!