output_interpreting

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Irin Sultana
Posts: 5
Joined: Sat Aug 28, 2021 4:05 pm

output_interpreting

Post by Irin Sultana »

Hi,
Recently i have submitted one protein sequence (S639738) and get the result from I-TASSER server. But i am very novice to interpret the result. As for this i have some questions:
1. What does it mean by solvent accessibility value? Does it mean near to 9 is more accessible to solvents? And if it likes so, is there any relation to solvent accessible site and ligand binding site?
2.In model figure how to mark the binding sites?
3.Acording to C-score of ligand binding sites, can i say someting like that "site 42(E) and 46(N) are candidate for Mg2+ binding?

Here, i am adding the link of my job: https://zhanglab.dcmb.med.umich.edu/I-T ... t/S639738/

Looking for your cooperation. Thanks.
ITASSERteam
Posts: 7
Joined: Sat Apr 24, 2021 2:05 am

Re: output_interpreting

Post by ITASSERteam »

You may read the webpage at:
https://zhanggroup.org/I-TASSER/annotation/
Irin Sultana
Posts: 5
Joined: Sat Aug 28, 2021 4:05 pm

Re: output_interpreting

Post by Irin Sultana »

Hi,
I have checked the result and annotation webpage. I didnt find the figure with ligand binding sites. Later i downloaded. But found with "Failed - No File". Here i am attaching the job link. https://zhanggroup.org/I-TASSER/output/S639738/

Image
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