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output_interpreting

Posted: Sun Aug 29, 2021 6:46 am
by Irin Sultana
Hi,
Recently i have submitted one protein sequence (S639738) and get the result from I-TASSER server. But i am very novice to interpret the result. As for this i have some questions:
1. What does it mean by solvent accessibility value? Does it mean near to 9 is more accessible to solvents? And if it likes so, is there any relation to solvent accessible site and ligand binding site?
2.In model figure how to mark the binding sites?
3.Acording to C-score of ligand binding sites, can i say someting like that "site 42(E) and 46(N) are candidate for Mg2+ binding?

Here, i am adding the link of my job: https://zhanglab.dcmb.med.umich.edu/I-T ... t/S639738/

Looking for your cooperation. Thanks.

Re: output_interpreting

Posted: Mon Aug 30, 2021 10:04 pm
by ITASSERteam
You may read the webpage at:
https://zhanggroup.org/I-TASSER/annotation/

Re: output_interpreting

Posted: Tue Aug 31, 2021 6:58 am
by Irin Sultana
Hi,
I have checked the result and annotation webpage. I didnt find the figure with ligand binding sites. Later i downloaded. But found with "Failed - No File". Here i am attaching the job link. https://zhanggroup.org/I-TASSER/output/S639738/

Image