ResPre precision matrix

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skyungyong
Posts: 1
Joined: Wed Oct 27, 2021 5:46 am

ResPre precision matrix

Post by skyungyong »

Hi!

I have obtained a precision matrix (441, L, L) from ResPre. I want to generate a distrogram-like plot where I can map a representative value (e.g. covariance) using the precision matrix for all pairwise positions (L x L) as in fig. 1 in the paper. What is the proper way to reduce the 21 x 21 matrix to a single representative value?

Thanks!
liyangum
Posts: 5
Joined: Tue May 11, 2021 1:42 am

Re: ResPre precision matrix

Post by liyangum »

Hi,

Thanks for the interest. In fact, the plot in Fig.1 was at the size of LX21 by Lx21. You can plot the output matrix of ROPE in https://github.com/leeyang/ResPRE/blob/ ... ecision.py (LINE43) for the raw precision matrix for visualization. If you need an L x L matrix, you may check Text S4 of https://zhanggroup.org//papers/2021_6_support.pdf for details.

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