Problem with predicted models

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dsairam789
Posts: 4
Joined: Fri Nov 12, 2021 3:42 pm

Problem with predicted models

Post by dsairam789 »

I recently used for server SPRING for the prediction of a viral protein complex. Target id : S1503A-S1503B

However, I noticed that after downloading the models and loading them on PyMol and ChimeraX, the files don't show a predicted structure but instead we get a dotted schematic overview of the predicted model. So, my question is, could you kindly pinpoint where I may have made a mistake ?

Thank you,
Yours Sincerely,
Sairam
jlspzw
Posts: 109
Joined: Tue May 04, 2021 5:04 pm

Re: Problem with predicted models

Post by jlspzw »

Hi

The SPRING major focus on threading and the output model only contains CA trace of the complex, for the full atomic level model, you can use pulcha+FASPR/modeller add the rest main chain and side chain atom.

If you do not have many structures that need the atomic model and do not know how to use modeller or pulcha, you can send us your structure.

Best
IT team
dsairam789
Posts: 4
Joined: Fri Nov 12, 2021 3:42 pm

Re: Problem with predicted models

Post by dsairam789 »

Target id : S1503A-S1503B

Can you tell me where and how can I send you a couple of predicted structures that need to be modelled ?

Thanks for your help,
Sairam
xiaogenz
Posts: 139
Joined: Sun Apr 25, 2021 12:02 am

Re: Problem with predicted models

Post by xiaogenz »

You can send us through the attachment.
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