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Problem with predicted models

Posted: Fri Nov 12, 2021 4:06 pm
by dsairam789
I recently used for server SPRING for the prediction of a viral protein complex. Target id : S1503A-S1503B

However, I noticed that after downloading the models and loading them on PyMol and ChimeraX, the files don't show a predicted structure but instead we get a dotted schematic overview of the predicted model. So, my question is, could you kindly pinpoint where I may have made a mistake ?

Thank you,
Yours Sincerely,
Sairam

Re: Problem with predicted models

Posted: Sat Nov 13, 2021 3:16 am
by jlspzw
Hi

The SPRING major focus on threading and the output model only contains CA trace of the complex, for the full atomic level model, you can use pulcha+FASPR/modeller add the rest main chain and side chain atom.

If you do not have many structures that need the atomic model and do not know how to use modeller or pulcha, you can send us your structure.

Best
IT team

Re: Problem with predicted models

Posted: Tue Nov 23, 2021 3:19 pm
by dsairam789
Target id : S1503A-S1503B

Can you tell me where and how can I send you a couple of predicted structures that need to be modelled ?

Thanks for your help,
Sairam

Re: Problem with predicted models

Posted: Wed Nov 24, 2021 1:37 am
by xiaogenz
You can send us through the attachment.