question about SPRING score
Posted: Wed Dec 08, 2021 6:18 am
Hi Zhang Lab Team,
I notice that the result of SPRING has a SPRING score, which evaluates models constructed from monomer-to-oligomer mappings. In the article of SPRING (PMCID: PMC4076494), SPRING score is represented as
SPRING-score = min(ZA, ZB) + w1 TM + w2 contact
And the results of off-line SPRING contain a file TemplateSummary.txt like this:
# Complex Template SpringScore LenAligned Dfire Coverage SeqidA TMscoreA ZscoreA ProbabilityA EvauleA SeqidB TMscoreB ZscoreB ProbabilityB EvauleB
1 1cwqA/1_0_0-1cwqA/1_1_1 43.999 287 205.877 0.367 0.209 0.201 -3.851 1.340 7.1e+03 0.134 0.261 -4.643 0.260 4.4e+04
It looks like there are TM scores for both chain A and chain B, and the term "contact" is not included in this file, I'm a bit confused about these terms.Could you tell which parts of this file correspond to the parts in the above equation of SPRING score? Thanks very much.
Sincerely,
Louis
I notice that the result of SPRING has a SPRING score, which evaluates models constructed from monomer-to-oligomer mappings. In the article of SPRING (PMCID: PMC4076494), SPRING score is represented as
SPRING-score = min(ZA, ZB) + w1 TM + w2 contact
And the results of off-line SPRING contain a file TemplateSummary.txt like this:
# Complex Template SpringScore LenAligned Dfire Coverage SeqidA TMscoreA ZscoreA ProbabilityA EvauleA SeqidB TMscoreB ZscoreB ProbabilityB EvauleB
1 1cwqA/1_0_0-1cwqA/1_1_1 43.999 287 205.877 0.367 0.209 0.201 -3.851 1.340 7.1e+03 0.134 0.261 -4.643 0.260 4.4e+04
It looks like there are TM scores for both chain A and chain B, and the term "contact" is not included in this file, I'm a bit confused about these terms.Could you tell which parts of this file correspond to the parts in the above equation of SPRING score? Thanks very much.
Sincerely,
Louis