Estimated time for STRUM job completion

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protstuff
Posts: 1
Joined: Wed May 19, 2021 11:04 am

Estimated time for STRUM job completion

Post by protstuff »

I have submitted a STRUM job on May 4th (ID is SM106131) and have yet to receive results. I was wondering if there are any rough estimates for how long it may take, given that I need the output of this job to submit a revised manuscript to a journal relatively soon.

Thanks in advance.
xiaogenz
Posts: 139
Joined: Sun Apr 25, 2021 12:02 am

Re: Estimated time for STRUM job completion

Post by xiaogenz »

Sorry! The server seems down now. You can try to download the standalone package and run it in your computer.
archana433
Posts: 2
Joined: Mon Nov 22, 2021 8:59 am

Re: Estimated time for STRUM job completion

Post by archana433 »

hi, I have downloaded the standalone package and but am unable to Install SIFT. wget http://sift.jcvi.org/www/sift4.0.3b.tar.gz not working. it downloads an empty file. That is why got this error -

Note: The pudated pdb is /media/DATA1/STRUM/example/pdb.pdb
LOMETS is running......
hhblits is running......
cp: cannot stat '/tmp/STmedia/1arrA950140485/seq.hhr': No such file or directory
SIFT is running......
cat: /bin/SIFTmod: No such file or directory
cp: cannot stat '/tmp/STmedia/1arrA950140485/seq2.txt.query.out': No such file or directory
cp: cannot stat '/tmp/STmedia/1arrA950140485/seq.pssm': No such file or directory
get the secondary structure......
get SA, phi and psi......
cp: cannot stat '/tmp/STmedia/1arrA950140485/seq.exp.sa': No such file or directory
cp: cannot stat '/tmp/STmedia/1arrA950140485/seq.svr.phi': No such file or directory
cp: cannot stat '/tmp/STmedia/1arrA950140485/seq.svr.psi': No such file or directory
cannot open seq.exp.sa at ./runSTRUM.pl line 563.
xiaogenz
Posts: 139
Joined: Sun Apr 25, 2021 12:02 am

Re: Estimated time for STRUM job completion

Post by xiaogenz »

The link for SIFT download is not available. I have created a link at https://zhanggroup.org/STRUM/download/sift4.0.3b.tar.gz for download.
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