download_lib.pl - Script Issues
Posted: Thu Mar 17, 2022 8:38 pm
Hello ITASSER Team,
I have been interested in testing out the CR-I-TASSER since its release, however, the web-version appears to take a bit of time to run samples. I wanted to install a local version and was trying to follow the instructions from https://zhanggroup.org/CR-I-TASSER/download.html
From following the MANUAL.txt, on step 2 it states to "'download_lib.pl' is provided in the package for automated library download and update of the libraries." I was able to input the directory and start running the script. However, I would hit an error in downloading the NR database.
'Downloading NR database...
System call failed: at ./download_lib.pl line 108'
Looking into this script, in line 108, it mentions 'ftp://zhanglab.ccmb.med.umich.edu/download/nr.tar.gz' as the location, but I don't believe I can access this. Would there be a potential workaround or way to update this?
Additionally, it looks like there are other downloads, some of them are from http://zhanglab.ccmd.med.umich.edu/BioLiP/ but are the updated links in https://zhanggroup.org/library/?
Thank you,
Andrew
I have been interested in testing out the CR-I-TASSER since its release, however, the web-version appears to take a bit of time to run samples. I wanted to install a local version and was trying to follow the instructions from https://zhanggroup.org/CR-I-TASSER/download.html
From following the MANUAL.txt, on step 2 it states to "'download_lib.pl' is provided in the package for automated library download and update of the libraries." I was able to input the directory and start running the script. However, I would hit an error in downloading the NR database.
'Downloading NR database...
System call failed: at ./download_lib.pl line 108'
Looking into this script, in line 108, it mentions 'ftp://zhanglab.ccmb.med.umich.edu/download/nr.tar.gz' as the location, but I don't believe I can access this. Would there be a potential workaround or way to update this?
Additionally, it looks like there are other downloads, some of them are from http://zhanglab.ccmd.med.umich.edu/BioLiP/ but are the updated links in https://zhanggroup.org/library/?
Thank you,
Andrew