respre memory issue
Posted: Sun Apr 24, 2022 2:32 pm
Hi,
I have a memory issue with respre:
currently I have memory limit of 20 GB on my machine.
when I try to run ResPRE it get killed with messege such as:
/usr/bin/respre: line 2: 65 Killed python /ResPRE/respre.py $@
or:
/usr/bin/respre: line 2: 20 Killed python /ResPRE/respre.py $@
alignment of 74 proteins, 1145 letters in each protein (including gaps)
I tried to look at old successful runs and I found out that I got max memory usage of ~ 550 GB.
I think the high usage is short-termed, possibly a leak of some kind.
Is there some kind of a workaround / solution for this?
Thanks!
Itai Roth
itai.roth@evogene.com
I have a memory issue with respre:
currently I have memory limit of 20 GB on my machine.
when I try to run ResPRE it get killed with messege such as:
/usr/bin/respre: line 2: 65 Killed python /ResPRE/respre.py $@
or:
/usr/bin/respre: line 2: 20 Killed python /ResPRE/respre.py $@
alignment of 74 proteins, 1145 letters in each protein (including gaps)
I tried to look at old successful runs and I found out that I got max memory usage of ~ 550 GB.
I think the high usage is short-termed, possibly a leak of some kind.
Is there some kind of a workaround / solution for this?
Thanks!
Itai Roth
itai.roth@evogene.com