Page 1 of 1

Query regarding interaction analysis

Posted: Fri Oct 14, 2022 9:06 pm
by quazitaushif
How can I predict interaction of my predicted protein with other proteins (possible binding) on i-Tasser ?

Re: Query regarding interaction analysis

Posted: Fri Oct 14, 2022 11:22 pm
by jlspzw
Dear user,

If you know the second protein that you want to check if it will bind to your target sequence,

you can try any of the following
https://zhanggroup.org/spring/
https://zhanggroup.org/COTH/
https://zhanggroup.org/Threpp/
https://zhanggroup.org/PEPPI/

if you do not know the potentially second sequence, you may try STRING database
https://string-db.org/

Best
IT team