Could you recommend articles or websites to interpret COAH results?
Does COAH provide us grid points for AutoDock docking?
I mean x, y, and z values (from the config file for Grid box).
Thank You.
COAH
Moderator: robpearc
Re: COAH
Dear user,
I guess you are pointing COACH. If so, you can check the references of the COACH server, which may give you more information about the methodology of the server.
Jianyi Yang, Ambrish Roy, and Yang Zhang. Protein-ligand binding site recognition using complementary binding-specific substructure comparison and sequence profile alignment, Bioinformatics, 29:2588-2595 (2013). (PDF and Support Information)
Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (PDF).
From the COACH server, you could get the PDB-formatted files that contain x,y,z of the ligand and protein binding positions. (see example https://zhanggroup.org/COACH/CH000001/)
Best
IT Team
I guess you are pointing COACH. If so, you can check the references of the COACH server, which may give you more information about the methodology of the server.
Jianyi Yang, Ambrish Roy, and Yang Zhang. Protein-ligand binding site recognition using complementary binding-specific substructure comparison and sequence profile alignment, Bioinformatics, 29:2588-2595 (2013). (PDF and Support Information)
Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (PDF).
From the COACH server, you could get the PDB-formatted files that contain x,y,z of the ligand and protein binding positions. (see example https://zhanggroup.org/COACH/CH000001/)
Best
IT Team