1a60 A 44 NA RF00233 URS000080E316_12154 9545221 0006417 12154 gggagcucaacucucccccccuuuuccgagggucaucggaacca <<<<<.......>>>>>(((...<<<<<<)))...>>>>>>... (((((.......)))))[[[...((((((]]]...))))))... NMR STRUCTURE OF A CLASSICAL PSEUDOKNOT: INTERPLAY OF SINGLE-AND DOUBLE-STRANDED RNA, 24 STRUCTURES; TYMV PSEUDOKNOT 1asy R 75 2.9 RF00005 URS00005AD0B9_4932 2047877 0030533 0006412 4932 uccgugauaguuuaanggncagaaugggcgcuugucncgugccagaunggggnucaauuccccgucgcggagcca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>....<<<<<.......>>>>>>>>>>>>.... (((((((..(((.....[....))).(((((.......)))))....(((((..]....)))))))))))).... CLASS II AMINOACYL TRANSFER RNA SYNTHETASES: CRYSTAL STRUCTURE OF YEAST ASPARTYL-TRNA SYNTHETASE COMPLEXED WITH TRNA ASP; T-RNA (75-MER) 1asy S 75 2.9 RF00005 URS00005AD0B9_4932 2047877 0030533 0006412 4932 uccgugauaguuuaanggncagaaugggcgcuugucncgugccagaunggggnucaauuccccgucgcggagcca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>....<<<<<.......>>>>>>>>>>>>.... (((((((..(((.....[....))).(((((.......)))))....(((((..]....)))))))))))).... CLASS II AMINOACYL TRANSFER RNA SYNTHETASES: CRYSTAL STRUCTURE OF YEAST ASPARTYL-TRNA SYNTHETASE COMPLEXED WITH TRNA ASP; T-RNA (75-MER) 1asz R 75 3.0 RF00005 URS00005AD0B9_4932 8313877 0030533 0006412 4932 uccgugauaguuuaanggncagaaugggcgcuugucncgugccagaunggggnucaauuccccgucgcggagcca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>....<<<<<.......>>>>>>>>>>>>.... (((((((..(((.....[....))).(((((.......)))))....(((((..]....)))))))))))).... THE ACTIVE SITE OF YEAST ASPARTYL-TRNA SYNTHETASE: STRUCTURAL AND FUNCTIONAL ASPECTS OF THE AMINOACYLATION REACTION; T-RNA (75-MER) 1asz S 75 3.0 RF00005 URS00005AD0B9_4932 8313877 0030533 0006412 4932 uccgugauaguuuaanggncagaaugggcgcuugucncgugccagaunggggnucaauuccccgucgcggagcca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>....<<<<<.......>>>>>>>>>>>>.... (((((((..(((.....[....))).(((((.......)))))....(((((..]....)))))))))))).... THE ACTIVE SITE OF YEAST ASPARTYL-TRNA SYNTHETASE: STRUCTURAL AND FUNCTIONAL ASPECTS OF THE AMINOACYLATION REACTION; T-RNA (75-MER) 1b23 R 74 2.6 RF00005 URS000003E908_562 10368282 0030533 0006412 562 ggcgcgunaacaaagcggnnauguagcggauugcanauccgucuaguccggnucgacuccggaacgcgccucca <<<<<<<..<<<.........>>>.<<<<<<.....>>>>>>....<<<<<.......>>>>>>>>>>>>.... (((((((..(((.....[...))).((((.........))))....(((((..]....)))))))))))).... E. coli cysteinyl-tRNA and T. aquaticus elongation factor EF-TU:GTP ternary complex; CYSTEINYL TRNA 1c0a B 77 2.4 RF00005 URS000009EE82_562 10562565 0030533 0006412 562 ggagcggnaguucagncggnnagaauaccugccunucacgcaggggnucgcgggnucgagucccguccguuccgcca <<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[...)))).(((((.......)))))......((((..]....)))).))))))).... CRYSTAL STRUCTURE OF THE E. COLI ASPARTYL-TRNA SYNTHETASE : TRNAASP : ASPARTYL-ADENYLATE COMPLEX; ASPARTYL TRNA 1cq5 A 43 NA RF00169 URS000080E0C0_562 10580470 0006617 0048501 562 ggcguuuaccaggucagguccggaaggaagcagccaaggcgcc <<<<<<.....<<<....<<<....>>>....>>>..>>>>>> (((((......(((....(((....)))....)))...))))) NMR STRUCTURE OF SRP RNA DOMAIN IV; SRP RNA DOMAIN IV 1cql A 43 NA RF00169 URS000080E0C0_562 10580470 0006617 0048501 562 ggcguuuaccaggucagguccggaaggaagcagccaaggcgcc <<<<<<.....<<<....<<<....>>>....>>>..>>>>>> ((((((.....(((....(((....)))....)))..)))))) NMR STRUCTURE OF SRP RNA DOMAIN IV; SRP DOMAIN IV RNA 1duh A 45 2.7 RF00169 URS000080E0AE_32630 10801497 0006617 0048501 32630 cucuguuuaccaggucagguccggaaggaagcagccaaggcagan ............................................. ............................................. CRYSTAL STRUCTURE OF THE CONSERVED DOMAIN IV OF E. COLI 4.5S RNA; 4.5S RNA DOMAIN IV 1dul B 49 1.8 RF00169 URS000080DD2B_32630 10678824 0006617 0048501 32630 ggcucuguuuaccaggucagguccgaaaggaagcagccaaggcagagcn <<<<<<<<<<....<<<..<.<<<....>>>..>.>>>.>>>>>>>>>> ((((((((((....(((....(((....)))....))).)))))))))) STRUCTURE OF THE RIBONUCLEOPROTEIN CORE OF THE E. COLI SIGNAL RECOGNITION PARTICLE; 4.5 S RNA DOMAIN IV 1e8o E 50 3.2 RF00017,RF04277 URS000080E0CE_9606 11089964 0006617,0035195 0005786,0016442 9606 nggccgggcgcgguggcgcgcgccuguagucccagcuacucgggaggcuc <<<<<<<<<<<<..(((.>>>>>>>....<<<<.)))....>>>>>>>>> ((((((((((((..[[[.)))))))....((((.]]..]..))))))))) Core of the Alu domain of the mammalian SRP; 7SL RNA 1e8s C 86 4.0 RF00017,RF04277 URS000080DFFF_9606 11089964 0006617,0035195 0005786,0016442 9606 gcuagcgagaccccgucucugccgggcgcgguggcgcgcgccuguagucccagcuacucgggaggcugaggugggaggaucgcuag .<<<<<<<..<.<<<<<<<.<<<<<<<<<<..(((.>>>>>>>.....<<<.)))....>>>.>>>.>>>>>>>>....>>>>>>> .(((((((....((..(((.(((.(((((........)))))......((..........)).))).)))..)).....))))))) Alu domain of the mammalian SRP (potential Alu retroposition intermediate); 7SL RNA, 88-MER 1efw C 73 3.0 RF00005 URS0000150212_562 10843857 0030533 0006412 562 ggagcggnaguucagncggnnagaauaccugccunucncgcaggggnucgcgggnucgagucccguccguucc <<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>> (((((((..((((.....[...)))).(((((.......)))))......((((..]....)))).))))))) Crystal structure of aspartyl-tRNA synthetase from Thermus thermophilus complexed to tRNAasp from Escherichia coli; ASPARTYL-TRNA 1efw D 73 3.0 RF00005 URS0000150212_562 10843857 0030533 0006412 562 ggagcggnaguucagncggnnagaauaccugccunucncgcaggggnucgcgggnucgagucccguccguucc <<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>> (((((((..((((.....[...)))).(((((.......)))))......((((..]....)))).))))))) Crystal structure of aspartyl-tRNA synthetase from Thermus thermophilus complexed to tRNAasp from Escherichia coli; ASPARTYL-TRNA 1eg0 O 76 11.5 RF00005 URS000080DD9A_562 10721991 0030533 0006412 562 cgcggggnggagcagccggnagcucgucgggnucauaacccgaagaucgucggnucaaauccggcccccgcaacca .<<<<<<..<.<<........>>(>.<<<<<.......>>>>>).....<<<<.......>>>>.>>>>>>..... .((((((..(((..........))).(((((.......))))).......((.........))..))))))..... FITTING OF COMPONENTS WITH KNOWN STRUCTURE INTO AN 11.5 A CRYO-EM MAP OF THE E.COLI 70S RIBOSOME; FORMYL-METHIONYL-TRNA 1ehz A 76 1.93 RF00005 URS000011107D_4932 10943889 0030533 0006412 4932 gcggauuuancucagnngggagagcnccaganunaanaunuggagnucnugugnucgnuccacagaauucgcacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).((((.........)))).....(((((..]....)))))))))))).... The crystal structure of yeast phenylalanine tRNA at 1.93 A resolution; TRANSFER RNA (PHE) 1eiy C 76 3.3 RF00005 URS000080E078_300852 9016717 0030533 0006412 300852 gccgagguagcucaguugguagagcaugcgacugaaaaucgcaguguccgcgguucgauuccgcgccucggcacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).(((((.......))))).....(((((..]....)))))))))))).... THE CRYSTAL STRUCTURE OF PHENYLALANYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS COMPLEXED WITH COGNATE TRNAPHE; TRNA(PHE) 1esy A 19 NA RF01380 URS000080E02B_11676 10860728 0043484 11676 ggcgacuggugaguacgcc <<<<<<<....>>>.>>>> ((((.((....))..)))) NMR STRUCTURE OF STEM LOOP SL2 OF THE HIV-1 PSI RNA PACKAGING SIGNAL REVEALS A NOVEL A-U-A BASE-TRIPLE PLATFORM; RNA (5'-R(P*GP*GP*CP*GP*AP*CP*UP*GP*GP*UP*GP*AP*GP*UP*AP*CP*GP*CP*C)-3') 1euq B 72 3.1 RF00005 URS000080E003_562 10860750 0030533 0006412 562 gggguaucgccaagcgguaaggcaccggauucugauuccggcagcgagguucgaauccucguaccccagcca <<<<<<..<<<.........>>>.<<<<<.......>>>>>...<<<<<.......>>>>>>>>>>>..... ((((((..(((.....[...))).(((((.......)))))...(((((..]....)))))))))))..... CRYSTAL STRUCTURE OF GLUTAMINYL-TRNA SYNTHETASE COMPLEXED WITH A TRNA-GLN MUTANT AND AN ACTIVE-SITE INHIBITOR; GLUTAMINYL TRNA 1euy B 73 2.6 RF00005 URS000080E0EE_562 10860750 0030533 0006412 562 gggguaucgccaagcgguaaggcaccggauucugauuccggcaagcgagguucgaauccucguaccccagcca <<<<<<..<<<.........>>>.<<<<<.......>>>>>....<<<<<.......>>>>>>>>>>>..... ((((((..(((.....[...))).(((((.......)))))....(((((..]....)))))))))))..... GLUTAMINYL-TRNA SYNTHETASE COMPLEXED WITH A TRNA MUTANT AND AN ACTIVE SITE INHIBITOR; GLUTAMINYL TRNA 1evv A 76 2.0 RF00005 URS000011107D_4930 10926517 0030533 0006412 4930 gcggauuuancucagnngggagagcnccaganunaagaunuggagnucnugugnucgnuccacagaauucgcacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).((((.........)))).....(((((..]....)))))))))))).... CRYSTAL STRUCTURE OF YEAST PHENYLALANINE TRANSFER RNA AT 2.0 A RESOLUTION; PHENYLALANINE TRANSFER RNA 1exd B 73 2.7 RF00005 URS000080DE52_562 10881199 0030533 0006412 562 gggguaucgccaagcgguaaggcaccggauucugauuccggaggucgagguucgaauccucguaccccagcca <<<<<<..<<<.........>>>.<<<<<.......>>>>>....<<<<<.......>>>>>>>>>>>..... ((((((..(((.....[...))).(((((.......)))))....(((((..]....)))))))))))..... CRYSTAL STRUCTURE OF A TIGHT-BINDING GLUTAMINE TRNA BOUND TO GLUTAMINE AMINOACYL TRNA SYNTHETASE; GLUTAMINE TRNA APTAMER 1f6u B 19 NA RF01380 URS000080E02B_11676 10926523 0043484 11676 ngcgacuggugaguacgcc <<<<<<<....>>>.>>>> ((((.((....))..)))) NMR structure of the HIV-1 nucleocapsid protein bound to stem-loop sl2 of the psi-RNA packaging signal. Implications for genome recognition; HIV-1 STEM-LOOP SL2 FROM PSI-RNA PACKAGING 1f7u B 76 2.2 RF00005 URS000080E1EA_4932 11060012 0030533 0006412 4932 uuccucgunncccaanggncacggcnucuggcuicgaaccagaaganuncaggnucanguccuggcggggaagcca <<<<<<<..<<<..........>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... .((((((..(((.....[....)))..((((.......))))......(((((..]....)))))))))))..... CRYSTAL STRUCTURE OF THE ARGINYL-TRNA SYNTHETASE COMPLEXED WITH THE TRNA(ARG) AND L-ARG; TRNA(ARG) 1f7v B 73 2.9 RF00005 URS000080E1EA_4932 11060012 0030533 0006412 4932 uuccucgunncccaanggncacggcnucuggcuicgaaccagaaganuncaggnucanguccuggcggggaag <<<<<<<..<<<..........>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>. .((((((..(((.....[....)))..((((.......))))......(((((..]....))))))))))).. CRYSTAL STRUCTURE OF YEAST ARGINYL-TRNA SYNTHETASE COMPLEXED WITH THE TRNAARG; TRNA(ARG) 1fcw A 76 17.0 RF00005 URS000011107D_4932 10931859 0030533 0006412 4932 gcggauuuancucagnngggagagcnccaganunaagaunuggagnucnugugnucgnuccacagaauucgcacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).((((.........)))).....(((((..]....)))))))))))).... TRNA POSITIONS DURING THE ELONGATION CYCLE; TRNAPHE 1fcw B 76 17.0 RF00005 URS000011107D_4932 10931859 0030533 0006412 4932 gcggauuuancucagnngggagagcnccaganunaagaunuggagnucnugugnucgnuccacagaauucgcacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).((((.........)))).....(((((..]....)))))))))))).... TRNA POSITIONS DURING THE ELONGATION CYCLE; TRNAPHE 1fcw C 76 17.0 RF00005 URS000011107D_4932 10931859 0030533 0006412 4932 gcggauuuancucagnngggagagcnccaganunaagaunuggagnucnugugnucgnuccacagaauucgcacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).((((.........)))).....(((((..]....)))))))))))).... TRNA POSITIONS DURING THE ELONGATION CYCLE; TRNAPHE 1fcw D 76 17.0 RF00005 URS000011107D_4932 10931859 0030533 0006412 4932 gcggauuuancucagnngggagagcnccaganunaagaunuggagnucnugugnucgnuccacagaauucgcacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).((((.........)))).....(((((..]....)))))))))))).... TRNA POSITIONS DURING THE ELONGATION CYCLE; TRNAPHE 1fcw E 76 17.0 RF00005 URS000011107D_4932 10931859 0030533 0006412 4932 gcggauuuancucagnngggagagcnccaganunaagaunuggagnucnugugnucgnuccacagaauucgcacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).((((.........)))).....(((((..]....)))))))))))).... TRNA POSITIONS DURING THE ELONGATION CYCLE; TRNAPHE 1ffy T 75 2.2 RF00005 URS000080E234_562 10446055 0030533 0006412 562 gggcuuguagcucaggugguuagagcgcaccccugauaagggugaggucggugguucaaguccacucaggcccac <<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.. (((((((..((((.....[...)))).(((((.......))))).....(((((..]....)))))))))))).. INSIGHTS INTO EDITING FROM AN ILE-TRNA SYNTHETASE STRUCTURE WITH TRNA(ILE) AND MUPIROCIN; ISOLEUCYL-TRNA 1fir A 76 3.3 RF00005 URS000032F6AC_9913 11073212 0030533 0006412 9913 gcccgnauancucagncggnagagcaucagacunuunaucugaggnnnnagggnucangucccuguucgggcgcca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..))))..(((.........)))......(((((..]....)))))))))))).... CRYSTAL STRUCTURE OF HIV-1 REVERSE TRANSCRIPTION PRIMER TRNA(LYS3); HIV-1 REVERSE TRANSCRIPTION PRIMER TRNA(LYS3) 1g59 B 75 2.4 RF00005 URS000052BB59_274 11224561 0030533 0006412 274 ggccccaucgucuagcgguuaggacgcggcccucucaaggccgaaacggggguucgauucccccuggggucacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>....<<<<<.......>>>>>>>>>>>>.... (((((((..((((....[...)))).(((((.......)))))....(((((..]....)))))))))))).... GLUTAMYL-TRNA SYNTHETASE COMPLEXED WITH TRNA(GLU).; TRNA(GLU) 1g59 D 75 2.4 RF00005 URS000052BB59_274 11224561 0030533 0006412 274 ggccccaucgucuagcgguuaggacgcggcccucucaaggccgaaacggggguucgauucccccuggggucacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>....<<<<<.......>>>>>>>>>>>>.... (((((((..((((....[...)))).(((((.......)))))....(((((..]....)))))))))))).... GLUTAMYL-TRNA SYNTHETASE COMPLEXED WITH TRNA(GLU).; TRNA(GLU) 1gax C 75 2.9 RF00005 URS00004A2E91_274 11114335 0030533 0006412 274 gggcggcuagcucagcggaagagcgcucgccucacacgcgagaggucguagguucaaguccuacgccgcccacca <<<<<<<..<<<<.......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((....[..)))).(((((.......))))).....(((((..]....)))))))))))).... CRYSTAL STRUCTURE OF THERMUS THERMOPHILUS VALYL-TRNA SYNTHETASE COMPLEXED WITH TRNA(VAL) AND VALYL-ADENYLATE ANALOGUE; TRNA(VAL) 1gax D 75 2.9 RF00005 URS00004A2E91_274 11114335 0030533 0006412 274 gggcggcuagcucagcggaagagcgcucgccucacacgcgagaggucguagguucaaguccuacgccgcccacca <<<<<<<..<<<<.......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((....[..)))).(((((.......))))).....(((((..]....)))))))))))).... CRYSTAL STRUCTURE OF THERMUS THERMOPHILUS VALYL-TRNA SYNTHETASE COMPLEXED WITH TRNA(VAL) AND VALYL-ADENYLATE ANALOGUE; TRNA(VAL) 1gid A 158 2.5 RF00028 URS000080E052_32630 8781224 0000372 32630 gaauugcgggaaaggggucaacagccguucaguaccaagucucaggggaaacuuugagauggccuugcaaaggguaugguaauaagcugacggacaugguccuaaccacgcagccaaguccuaagucaacagaucuucuguugauauggaugcaguuc <...<<<<<<...<<<<<<.....<<<.<<<<.<<...<<<<<<<<<....>>>>>>>>>..<<.......>>.....>>......>>>>>>>....>>>>>>..>>.>>>>..>..<<<<...<<<<<<<<<...>>>>>>>>>..>>>>....... (...((((((...((((((.....(((.((((.(((..(((((((((....)))))))))..((.......))....)))......)))))))....))))))..)).))))..)..((((..((((((((((...))))))))).)))))....... CRYSTAL STRUCTURE OF A GROUP I RIBOZYME DOMAIN: PRINCIPLES OF RNA PACKING; P4-P6 RNA RIBOZYME DOMAIN 1gid B 158 2.5 RF00028 URS000080E052_32630 8781224 0000372 32630 gaauugcgggaaaggggucaacagccguucaguaccaagucucaggggaaacuuugagauggccuugcaaaggguaugguaauaagcugacggacaugguccuaaccacgcagccaaguccuaagucaacagaucuucuguugauauggaugcaguuc <...<<<<<<...<<<<<<.....<<<.<<<<.<<...<<<<<<<<<....>>>>>>>>>..<<.......>>.....>>......>>>>>>>....>>>>>>..>>.>>>>..>..<<<<...<<<<<<<<<...>>>>>>>>>..>>>>....... (...((((((...((((((.....(((.((((.(((..(((((((((....)))))))))..((.......))....)))......)))))))....))))))..)).))))..)..((((..((((((((((...))))))))).)))))....... CRYSTAL STRUCTURE OF A GROUP I RIBOZYME DOMAIN: PRINCIPLES OF RNA PACKING; P4-P6 RNA RIBOZYME DOMAIN 1grz A 247 5.0 RF00028 URS000080E07B_5911 9841391 0000372 5911 gaccgucaaauugcgggaaaggggucaacagccguucaguaccaagucucaggggaaacuuugagauggccuugcaaaggguaugguaauaagcugacggacaugguccuaaccacgcagccaaguccuaagucaacaggagacuguugauauggaugcaguucacagacuaaaugucggucggggaagauguauucuucucauaagauauagucggaccucucccgaaagggaguuggaguacucg <<<<<.<....<<<<<<...<<<<<<.....<<<.<<<<.<<<..<<<<<<<<<....>>>>>>>>>..<<.......>>....>>>......>>>>>>>....>>>>>>..>>.>>>>..<..<<<<...<<<<<<<<....>>>>>>>>..>>>>...>.......((((...>.>>>>>.<<<<<<.......>>>>>>........))))..<<.<.<<<<<....>>>>>..>......>>. (((((.((...((((((...((((((.....(((.((((.(((...((((((((....))))))))...((.......))....)))......)))))))....))))))..)).)))).(...((((..(((((((.(....).)))))).)))))...)....[.[.[[[..)).))))).(.(((((.....))))).)........]]].]]((.(.(((((....)))))..)......)). A PREORGANIZED ACTIVE SITE IN THE CRYSTAL STRUCTURE OF THE TETRAHYMENA RIBOZYME; LSU R-RNA GROUP I INTRON 1grz B 247 5.0 RF00028 URS000080E07B_5911 9841391 0000372 5911 gaccgucaaauugcgggaaaggggucaacagccguucaguaccaagucucaggggaaacuuugagauggccuugcaaaggguaugguaauaagcugacggacaugguccuaaccacgcagccaaguccuaagucaacaggagacuguugauauggaugcaguucacagacuaaaugucggucggggaagauguauucuucucauaagauauagucggaccucucccgaaagggaguuggaguacucg <<<<<.<<...<<..<<...<<<<<<.....<<<.<<<<.<<...<<<<<<<<<....>>>>>>>>>..<<.......>>.....>>......>>>>>>>....>>>>>>..>>...>><.<..<<<<...<<<<<<<<....>>>>>>>>..>>>>...>>......((((..>>.>>>>>.<<<<<<.......>>>>>>........)))).......<<<<<....>>>>>............ (((((.((......(((...((((((.....(((.((((.(((..(((((((((....)))))))))..((.......))....)))......)))))))....))))))..)).)........((((..(((((((.(....).)))))).)))))........[..[[[...)).)))))..(((.((.....)).)))..........]]].].....(((((....)))))............ A PREORGANIZED ACTIVE SITE IN THE CRYSTAL STRUCTURE OF THE TETRAHYMENA RIBOZYME; LSU R-RNA GROUP I INTRON 1gsg T 75 2.8 RF00005 URS00004FF598_562 2479982 0030533 0006412 562 ugggguancgccaagcngnaaggcaccgganucugnuuccggcauuccgaggnucgaauccucguaccccagcca .<<<<<<..<<<....(....>>>.<<<<<.......>>>>>.....<<<<<..)....>>>>>>>>>>>..... .((((((..(((.........))).(((((.......))))).....((((.........))))))))))..... Structure of E.coli glutaminyl-tRNA synthetase complexed with trnagln and ATP at 2.8 Angstroms resolution; TRNAGLN 1gtr B 74 2.5 RF00005 URS0000541BD0_562 1857417 0030533 0006412 562 gggguaucgccaagcgguaaggcaccggauucugauuccggcauuccgagguucgaauccucguaccccagcca <<<<<<..<<<.........>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..(((.....[...))).(((((.......))))).....(((((..]....)))))))))))..... STRUCTURAL BASIS OF ANTICODON LOOP RECOGNITION BY GLUTAMINYL-TRNA SYNTHETASE; RNA (74-MER) 1gts B 74 2.8 RF00005 URS0000541BD0_562 8364025 0030533 0006412 562 gggguaucgccaagcgguaaggcaccggauucugauuccggcauuccgagguucgaauccucguaccccagcca <<<<<<..<<<.........>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..(((.....[...))).(((((.......))))).....(((((..]....)))))))))))..... STRUCTURAL BASIS FOR TRANSFER RNA AMINOACEYLATION BY ESCHERICHIA COLI GLUTAMINYL-TRNA SYNTHETASE; TRNAGLN 1h3e B 84 2.9 RF00005 URS000080DF5D_274 12110594 0030533 0006412 274 gggcagguucccgagcggccaaaggggacggucuguaaaaccguuggcguaugccuucgcuggnucgnauccagcccugcccac <<<<<<<..<<<...........>>><<<<<<.......>>>>>><<<....>>>...<<<<<.......>>>>>>>>>>>>.. (((((((..(((.....[.....)))((((((.......))))))(((....)))...(((((..]....)))))))))))).. Tyrosyl-tRNA synthetase from Thermus thermophilus complexed with wild-type tRNAtyr(GUA) and with ATP and tyrosinol; WILD-TYPE TRNATYR(GUA) 1h4q T 67 3.0 RF00005 URS000080DE47_274 11399074,10970866,10666603,10666604,9493271 0030533 0006412 274 ggaguagcgcagcccgguagcgcaccucguucgggacgaggggggcgcuggnucagauccagucucc <<<<..<<<<.........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>> ((((..((((......[..)))).((((((.....)))))).....(((((..]....))))))))) Prolyl-tRNA synthetase from Thermus thermophilus complexed with tRNApro(CGG), ATP and prolinol; TRNAPRO(CGG) 1h4s T 67 2.85 RF00005 URS000080DE47_274 11399074,10970866,10666603,10666604,9493271 0030533 0006412 274 ggaguagcgcagcccgguagcgcaccucguucgggacgaggggggcgcuggnucagauccagucucc <<<<..<<<<.........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>> ((((..((((......[..)))).((((((.....)))))).....(((((..]....))))))))) Prolyl-tRNA synthetase from Thermus thermophilus complexed with tRNApro(CGG) and a prolyl-adenylate analogue; TRNAPRO(CGG) 1hq1 B 49 1.52 RF00169 URS000080DD2B_32630 11243816 0006617 0048501 32630 ggcucuguuuaccaggucagguccgaaaggaagcagccaaggcagagcn <<<<<<<<<<....<<<..<.<<<....>>>..>.>>>.>>>>>>>>>> ((((((((((....(((....(((....)))....))).)))))))))) STRUCTURAL AND ENERGETIC ANALYSIS OF RNA RECOGNITION BY A UNIVERSALLY CONSERVED PROTEIN FROM THE SIGNAL RECOGNITION PARTICLE; 4.5S RNA DOMAIN IV 1hr2 A 157 2.25 RF00028 URS000080DD53_32630 11286889 0000372 32630 gaauugcgggaaaggggucaacagccguucaguaccaagucucaggggaaacuuugagauggccuugcaaaggguaugguaauaagcugacggacaugguccuaacacgcagccaaguccuaagucaacagaucuucuguugauauggaugcaguuc ...<<<<<.<...<<<<<<.....<<<.<<<<.<<...<<<<<<<<<....>>>>>>>>>..<<.......>>.....>>......>>>>>>>....>>>>>>..>.>>>>>....<<<<...<<<<<<<<<...>>>>>>>>>..>>>>....... ....((((.(...((((((.....(((.((((.(((..(((((((((....)))))))))..((.......))....)))......)))))))....))))))..).)))).....((((..((((((((((...))))))))).)))))....... CRYSTAL STRUCTURE ANALYSIS OF A MUTANT P4-P6 DOMAIN (DELC209) OF TETRAHYMENA THEMOPHILA GROUP I INTRON.; P4-P6 DELC209 MUTANT RNA RIBOZYME DOMAIN 1hr2 B 158 2.25 RF00028 URS000080DD53_32630 11286889 0000372 32630 ggaauugcgggaaaggggucaacagccguucaguaccaagucucaggggaaacuuugagauggccuugcaaaggguaugguaauaagcugacggacaugguccuaacacgcagccaaguccuaagucaacagaucuucuguugauauggaugcaguuc .<...<<<<.<...<<<<<<.....<<<.<<<<.<<...<<<<<<<<<....>>>>>>>>>..<<.......>>.....>>......>>>>>>>....>>>>>>..>.>>>>..>..<<<<...<<<<<<<<<...>>>>>>>>>..>>>>....... .(...((((.(...((((((.....(((.((((.(((..(((((((((....)))))))))..((.......))....)))......)))))))....))))))..).))))..)..((((..((((((((((...))))))))).)))))....... CRYSTAL STRUCTURE ANALYSIS OF A MUTANT P4-P6 DOMAIN (DELC209) OF TETRAHYMENA THEMOPHILA GROUP I INTRON.; P4-P6 DELC209 MUTANT RNA RIBOZYME DOMAIN 1i9v A 76 2.6 RF00005 URS000011107D_4932 11373618 0030533 0006412 4932 gcggauuuagcucaguugggagagcgccagacugaagaucuggagguccugugnucgauccacagaauucgcacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).(((((.......))))).....(((((..]....)))))))))))).... CRYSTAL STRUCTURE ANALYSIS OF A TRNA-NEOMYCIN COMPLEX; PHENYLALANINE TRANSFER RNA 1il2 C 75 2.6 RF00005 URS00005AD0B9_4932 11566892 0030533 0006412 4932 uccgugauaguuuaanggncagaaugggcgcuugucncgugccagaunggggnucaauuccccgucgcggagcca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>....<<<<<.......>>>>>>>>>>>>.... (((((((..(((.....[....))).(((((.......)))))....(((((..]....)))))))))))).... Crystal Structure of the E. coli Aspartyl-tRNA Synthetase:Yeast tRNAasp:aspartyl-Adenylate Complex; ASPARTYL TRANSFER RNA 1il2 D 70 2.6 RF00005 URS00005AD0B9_4932 11566892 0030533 0006412 4932 ccgugauaguuuaanggncagaaugggcgcuugucncgugccagaunggggnucaauuccccgucgcgga <<<<<<..<<<<........>>>>.<<<<<.......>>>>>....<<<<<.......>>>>>>>>>>>. ((((((..(((.....[....))).(((((.......)))))....(((((..]....))))))))))). Crystal Structure of the E. coli Aspartyl-tRNA Synthetase:Yeast tRNAasp:aspartyl-Adenylate Complex; ASPARTYL TRANSFER RNA 1ivs C 75 2.9 RF00005 URS00004A2E91_274 12554880 0030533 0006412 274 gggcggcuagcucagcggaagagcgcucgccucacacgcgagaggucguagguucaaguccuacgccgcccacca <<<<<<<..<<<<.......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((....[..)))).(((((.......))))).....(((((..]....)))))))))))).... CRYSTAL STRUCTURE OF THERMUS THERMOPHILUS VALYL-TRNA SYNTHETASE COMPLEXED WITH TRNA(VAL) AND VALYL-ADENYLATE ANALOGUE; tRNA (Val) 1ivs D 75 2.9 RF00005 URS00004A2E91_274 12554880 0030533 0006412 274 gggcggcuagcucagcggaagagcgcucgccucacacgcgagaggucguagguucaaguccuacgccgcccacca <<<<<<<..<<<<.......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((....[..)))).(((((.......))))).....(((((..]....)))))))))))).... CRYSTAL STRUCTURE OF THERMUS THERMOPHILUS VALYL-TRNA SYNTHETASE COMPLEXED WITH TRNA(VAL) AND VALYL-ADENYLATE ANALOGUE; tRNA (Val) 1j1u B 74 1.95 RF00005 URS000020A9DB_2190 12754495 0030533 0006412 2190 ccggcgguaguucagccugguagaacggcggacuguagauccgcaugucgcugguucaaauccggcccgccgga <<<<<<<..<<<<.........>>>><<<<<<.......>>>>>.>...<<<<<.......>>>>>>>>>>>>. (((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))). Crystal structure of archaeal tyrosyl-tRNA synthetase complexed with tRNA(Tyr) and L-tyrosine; tRNA(Tyr) 1j2b C 77 3.3 RF00005 URS000080DF89_53953 12732145 0030533 0006412 53953 gggcccguggucuaguuggucaugacgccgcccuuacgaggcggagguccgggguucaaguccccgcgggcccacca <<<<<<.................<<<.<<<<<.......>>>>>..>>><<<<<.......>>>>>.>>>>>>.... (((((((................(((..((((.......))))...)))(((((.......)))))))))))).... Crystal Structure Of Archaeosine tRNA-Guanine Transglycosylase Complexed With lambda-form tRNA(Val); tRNA(Val) 1j2b D 71 3.3 RF00005 URS000080DF89_53953 12732145 0030533 0006412 53953 gggcccguggucuaguugacgccgcccuuacgaggcggagguccgggguucaaguccccgcgggcccacca <<<<<<...........<<<.<<<<<.......>>>>>..>>><<<<<.......>>>>>.>>>>>>.... (((((((..........(((.(((((.......)))))..)))(((.(........))))))))))).... Crystal Structure Of Archaeosine tRNA-Guanine Transglycosylase Complexed With lambda-form tRNA(Val); tRNA(Val) 1jgo B 76 5.6 RF00005 URS000011107D_32630 11511350 0030533 0006412 32630 gcggauuuancucagnngggagagcnccaganunaagaunuggagnucnugugnucgnuccacagaauucgcacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).((((.........)))).....(((((..]....)))))))))))).... The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGO, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIY; tRNA(Phe) 1jgo C 76 5.6 RF00005 URS000011107D_32630 11511350 0030533 0006412 32630 gcggauuuancucagnngggagagcnccaganunaagaunuggagnucnugugnucgnuccacagaauucgcacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... .((((((..((((.....[..)))).((((.........)))).....(((((..]....)))))))))))..... The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGO, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIY; tRNA(Phe) 1jgo D 74 5.6 RF00005 URS000080E2DD_32630 11511350 0030533 0006412 32630 uccguganaacaaagcggnnauguaccggauuuuuauuccggcuaunggggnucaauuccccgucgcggagcca <<<<<<<..<<<.........>>>.<<<<<.......>>>>>....<<<<<.......>>>>>>>>>>>>.... (((((((..(((.....[...))).(((((.......)))))....(((((..]....)))))))))))).... The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGO, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIY; tRNA(Phe) 1jgp B 76 7.0 RF00005 URS000011107D_32630 11511350 0030533 0006412 32630 gcggauuuancucagnngggagagcnccaganunaagaunuggagnucnugugnucgnuccacagaauucgcacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).((((.........)))).....(((((..]....)))))))))))).... The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGP, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIY; tRNA(Phe) 1jgp C 76 7.0 RF00005 URS000011107D_32630 11511350 0030533 0006412 32630 gcggauuuancucagnngggagagcnccaganunaagaunuggagnucnugugnucgnuccacagaauucgcacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... .((((((..((((.....[..)))).((((.........)))).....(((((..]....)))))))))))..... The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGP, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIY; tRNA(Phe) 1jgp D 74 7.0 RF00005 URS000080E2DD_32630 11511350 0030533 0006412 32630 uccguganaacaaagcggnnauguaccggauuuuuauuccggcuaunggggnucaauuccccgucgcggagcca <<<<<<<..<<<.........>>>.<<<<<.......>>>>>....<<<<<.......>>>>>>>>>>>>.... (((((((..(((.....[...))).(((((.......)))))....(((((..]....)))))))))))).... The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGP, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIY; tRNA(Phe) 1jgq B 76 5.0 RF00005 URS000011107D_32630 11511350 0030533 0006412 32630 gcggauuuancucagnngggagagcnccaganunaagaunuggagnucnugugnucgnuccacagaauucgcacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).((((.........)))).....(((((..]....)))))))))))).... The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGQ, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIY; tRNA(Phe) 1jgq C 76 5.0 RF00005 URS000011107D_32630 11511350 0030533 0006412 32630 gcggauuuancucagnngggagagcnccaganunaagaunuggagnucnugugnucgnuccacagaauucgcacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... .((((((..((((.....[..)))).((((.........)))).....(((((..]....)))))))))))..... The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGQ, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIY; tRNA(Phe) 1jgq D 74 5.0 RF00005 URS000080E2DD_32630 11511350 0030533 0006412 32630 uccguganaacaaagcggnnauguaccggauuuuuauuccggcuaunggggnucaauuccccgucgcggagcca <<<<<<<..<<<.........>>>.<<<<<.......>>>>>....<<<<<.......>>>>>>>>>>>>.... (((((((..(((.....[...))).(((((.......)))))....(((((..]....)))))))))))).... The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGQ, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIY; tRNA(Phe) 1ju7 A 16 NA URS000080E1CD_10090 11871662 0006398 10090 ggcccuuuucagggcc <<.<<<....>>>.>> ((((((....)))))) NMR Solution Structure of the RNA Hairpin Binding Site for the Histone Stem-loop Binding Protein; 5'-R(*GP*GP*CP*CP*AP*AP*AP*GP*GP*CP*CP*CP*UP*UP*UP*UP*CP*AP*GP*GP*GP*CP*CP*AP*CP*CP*CP*A)-3' 1jwc A 16 NA URS000080E1CD_10090 11871662 0006398 10090 ggcccuuuucagggcc ...<<<....>>>... ((((((....)))))) NMR SOLUTION STRUCTURE OF THE RNA HAIRPIN BINDING SITE FOR THE HISTONE STEM-LOOP BINDING PROTEIN; 5'-R(*GP*GP*CP*CP*AP*AP*AP*GP*GP*CP*CP*CP*UP*UP*UP*UP*CP*AP*GP*GP*GP*CP*CP*AP*CP*CP*CP*A)-3' 1kxk A 70 3.0 RF00029 URS000080DEDD_4932 11859154 0000373 4932 gucuaccuaucgggcuaaggagccguaugcgaugaaagucgcacguacgguucuaugcccgggggaaaac .....<<<..<<<<<...<<<<<<<<<<<<<<<....>>>>>..>>>>>>>>>>..>>>>>>>>...... .....(((..(((((...(((((((((((((((....)))))..))))))))))..))))))))...... Crystal Structure of a RNA Molecule Containing Domain 5 and 6 of the Yeast ai5g Group II Self-splicing Intron; ai5g group II Self-splicing intron 1l8v A 157 2.8 RF00028 URS000080E124_32630 12189204 0000372 32630 gaauugggggaaaggggucaacagccguucaguaccaagucucaggggaaacuuugagauggccuugcaaaggguaugguaauaagcugacggacaugguccuaacccccagccaaguccuaagucaacagaucuucuguugauauggaugcaguuc ....<<<<<<...<<<<<......<<<.<<<<.<<...<<<<<<<<<....>>>>>>>>>..<<.......>>.....>>......>>>>>>>.....>>>>>..>>>>>>.....<<<<...<<<<<<<<<...>>>>>>>>>..>>>>....... ....((((((...(((.((.....(((.((((.(((..(((((((((....)))))))))..((.......))....)))......)))))))....)).)))..)))))).....((((..((((((((((...))))))))).)))))....... Crystal Structure of a Mutant (C109G,G212C) P4-P6 Domain of the Group I Intron from Tetrahymena Thermophilia; P4-P6 RNA ribozyme domain 1l8v B 157 2.8 RF00028 URS000080E124_32630 12189204 0000372 32630 gaauugggggaaaggggucaacagccguucaguaccaagucucaggggaaacuuugagauggccuugcaaaggguaugguaauaagcugacggacaugguccuaacccccagccaaguccuaagucaacagaucuucuguugauauggaugcaguuc ....<<<<<<...<<<<<......<<<.<<<<.<<...<<<<<<<<<....>>>>>>>>>..<<.......>>.....>>......>>>>>>>.....>>>>>..>>>>>>.....<<<<...<<<<<<<<<...>>>>>>>>>..>>>>....... ....((((((...(((.((.....(((.((((.(((..(((((((((....)))))))))..((.......))....)))......)))))))....)).)))..))))))(....((((..((((((((((...))))))))).)))))......) Crystal Structure of a Mutant (C109G,G212C) P4-P6 Domain of the Group I Intron from Tetrahymena Thermophilia; P4-P6 RNA ribozyme domain 1l9a B 126 2.9 RF00017,RF01856 URS000080DE1E_9606 12086622 0006617 0005786 9606 gacacuaaguucggcaucaauauggugaccucccgggagcgggggaccaccagguugccuagaggggugaaccggcccaggucggaaacggagcaggucaaaacucccgugcugaucaguagugun <<<<<<..<.<<<<<<<<<<<.<<<<<..<<<<<<....>>>>>>..>>>>>.>>>>......<<<<<.....<<<<..<.<<<....>>>..>.>>>>...>>>>>.>>>>>>>.>...>>>>>> ((((((..(.(((((((((((.(((((..((((((....))))))..))))).))))......(((((.....(.((....(((....)))....)).)...))))).))))))).)...)))))) CRYSTAL STRUCTURE OF SRP19 IN COMPLEX WITH THE S DOMAIN OF SIGNAL RECOGNITION PARTICLE RNA; signal recognition particle RNA S domain 1lng B 97 2.3 RF00169 URS000080E11F_2190 12050674 0006617 0048501 2190 ucggcggugggggagcaucuccuguaggggagauguaacccccuuuaccugccgaaccccgccaggcccggaagggagcaacgguaggcaggacguc ..<<<<..<<<<<.<<<<<<<<<....>>>>>>>>>..>>>>>....<<<<<<.....<<<...<.<<<....>>>..>..>>>..>>>>>>.>>>> ..(.((..(((((.(((((((((....)))))))))..)))))....((((((.....(((.....(((....))).....)))..)))))).)).) Crystal Structure of the SRP19-7S.S SRP RNA Complex of M. jannaschii; 7S.S SRP RNA 1ls2 B 76 16.8 RF00005 URS000011107D_4932 12093756 0030533 0006412 4932 gcggauuuagcucaguugggagagcgccagacugaagaucuggagguccuguguucgauccacagaauucgcacca <<<<<<(..<<<.........)>>>.<<<<<.......>>>>>......<<<<.......>>>>>..>>>>>.... (((.((...((............)).(((..(....)...)))......(((.........)))..)).))).... Fitting of EF-Tu and tRNA in the Low Resolution Cryo-EM Map of an EF-Tu Ternary Complex (GDP and Kirromycin) Bound to E. coli 70S Ribosome; Phenylalanine transfer RNA 1lvj A 31 NA RF00250 URS000080DD99_11676 12079782 0035195 0016442 11676 ggccagaucugagccugggagcucucuggcc <<<<<<<...<<<<......>>>>>>>>>>> (((((((...((((......))))))))))) STRUCTURE OF TAR RNA COMPLEXED WITH A TAT-TAR INTERACTION NANOMOLAR INHIBITOR THAT WAS IDENTIFIED BY COMPUTATIONAL SCREENING; HIV-1 Trans Activating Region RNA 1mfq A 128 3.1 RF00017,RF01856 URS000080DE1E_9606 12244299 0006617 0005786 9606 gacacuaaguucggcaucaauauggugaccucccgggagcgggggaccaccagguugccuaaggaggggugaaccggcccaggucggaaacggagcaggucaaaacucccgugcugaucaguagugun <<<<<<<.<.<<<<<<<<<<<.<<<<<..<<<<<<....>>>>>>..>>>>>.>>>>........<<<<<.....<<<<..<.<<<....>>>..>.>>>>...>>>>>.>>>>>>>.>..>>>>>>> ((((((..(.(((((((((((.(((((..((((((....))))))..))))).))))......(.(((((.....((((....(((....)))....))))...))))))))))))).)...)))))) Crystal Structure Analysis of a Ternary S-Domain Complex of Human Signal Recognition Particle; 7S RNA of human SRP 1mj1 D 76 13.0 RF00005 URS000011107D_562 12379845 0030533 0006412 562 gcggauuuancucagnngggagagcnccaganunaagaunuggagnucnugugnucgnuccacagaauucgcacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).((((.........)))).....(((((..]....)))))))))))).... FITTING THE TERNARY COMPLEX OF EF-Tu/tRNA/GTP AND RIBOSOMAL PROTEINS INTO A 13 A CRYO-EM MAP OF THE COLI 70S RIBOSOME; Phe-tRNA 1mj1 C 76 13.0 RF00005 URS000011107D_562 12379845 0030533 0006412 562 gcggauuuancucagnngggagagcnccaganunaagaunuggagnucnugugnucgnuccacagaauucgcacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... .((((((..((((.....[..)))).((((.........)))).....(((((..]....)))))))))))..... FITTING THE TERNARY COMPLEX OF EF-Tu/tRNA/GTP AND RIBOSOMAL PROTEINS INTO A 13 A CRYO-EM MAP OF THE COLI 70S RIBOSOME; Phe-tRNA 1ml5 B 76 14.0 RF00005 URS000011107D_562 12511961 0030533 0006412 562 gcggauuuancucagnngggagagcnccaganunaagaunuggagnucnugugnucgnuccacagaauucgcacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... .((((((..((((.....[..)))).((((.........)))).....(((((..]....)))))))))))..... Structure of the E. coli ribosomal termination complex with release factor 2; T-RNA(PHE) 1n77 C 75 2.4 RF00005 URS000052BB59_274 12554668 0030533 0006412 274 ggccccaucgucuagcgguuaggacgcggcccucucaaggccgaaacggggguucgauucccccuggggucacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>....<<<<<.......>>>>>>>>>>>>.... (((((((..((((....[...)))).(((((.......)))))....(((((..]....)))))))))))).... Crystal structure of Thermus thermophilus glutamyl-tRNA synthetase complexed with tRNA(Glu) and ATP.; tRNA(Glu) 1n77 D 75 2.4 RF00005 URS000052BB59_274 12554668 0030533 0006412 274 ggccccaucgucuagcgguuaggacgcggcccucucaaggccgaaacggggguucgauucccccuggggucacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>....<<<<<.......>>>>>>>>>>>>.... (((((((..((((....[...)))).(((((.......)))))....(((((..]....)))))))))))).... Crystal structure of Thermus thermophilus glutamyl-tRNA synthetase complexed with tRNA(Glu) and ATP.; tRNA(Glu) 1n78 C 75 2.1 RF00005 URS000052BB59_274 12554668 0030533 0006412 274 ggccccaucgucuagcgguuaggacgcggcccucucaaggccgaaacggggguucgauucccccuggggucacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>....<<<<<.......>>>>>>>>>>>>.... (((((((..((((....[...)))).(((((.......)))))....(((((..]....)))))))))))).... Crystal structure of Thermus thermophilus glutamyl-tRNA synthetase complexed with tRNA(Glu) and glutamol-AMP.; tRNA(Glu) 1n78 D 75 2.1 RF00005 URS000052BB59_274 12554668 0030533 0006412 274 ggccccaucgucuagcgguuaggacgcggcccucucaaggccgaaacggggguucgauucccccuggggucacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>....<<<<<.......>>>>>>>>>>>>.... (((((((..((((....[...)))).(((((.......)))))....(((((..]....)))))))))))).... Crystal structure of Thermus thermophilus glutamyl-tRNA synthetase complexed with tRNA(Glu) and glutamol-AMP.; tRNA(Glu) 1n8x A 36 NA RF00175 URS000080E029_11676 12559920 0019074 11676 ggacucggcuugcuggagacggcaagaggcgagucc <<<<<<<.<<<<<<......>>>>>>...>>>>>>> (((((((.(((((((....)))))))...))))))) Solution structure of HIV-1 Stem Loop SL1; HIV-1 STEM LOOP SL1 MONOMERIC RNA 1nbs A 120 3.15 RF00011 URS000080E089_1423 12610630 3.1.26.5 0004526 0008033 0030680 1423 gcgagccuagcgaagucauaagcuagggcagucuuuagaggcugacggcaggaaaaagaguauccuugaaagugccacagugacgaagucucgagaguggaacgcgguaaaccccucgca <<<<<<<<<<<..........>>>>>>.<<<<<<....>>>>>>..<<.<<<<.........>>>>.....<<<<<............<<<..>>>.........>>>..>>>>>>>>>. (((((((((((..........))))))((((((......))))).)((.((((.........)))).....(((((............(((()))).........)))..))))))))). Crystal structure of the specificity domain of Ribonuclease P RNA; RIBONUCLEASE P RNA 1nbs B 150 3.15 RF00011 URS000080E089_1423 12610630 3.1.26.5 0004526 0008033 0030680 1423 gcgagccuagcgaagucauaagcuagggcagucuuggcugacggcaggaaaaaagccuacgucuucggauauggcugaguauccuugaaagugccacagugacgaagucucacuagaaauggugagaguggaacgcgguaaaccccucgc <<<<<<<<<<<..........>>>>>>.<<<<<..>>>>>..<<.<<<<....<<<<...<<<<..>>>>..>>>>.....>>>>.....<<<<<............<<<<<<<......>>>>>>>.........>>>..>>>>>>>>> (((((((((((..........))))))((((.(..).))).)((.((((....((((...(((....)))..)))).....)))).....(((((............((((((((....)))))))).........)))..))))))))) Crystal structure of the specificity domain of Ribonuclease P RNA; RIBONUCLEASE P RNA 1o0b B 74 2.7 RF00005 URS00004FF598_562 12691748 0030533 0006412 562 gggguaucgccaagcgguaaggcaccggauucugauuccggcauuccgagguucgaauccucguaccccagcca <<<<<<..<<<.........>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..(((.....[...))).(((((.......))))).....(((((..]....)))))))))))..... CRYSTAL STRUCTURE OF L-GLUTAMINE AND AMPCPP BOUND TO GLUTAMINE AMINOACYL TRNA SYNTHETASE; Glutaminyl tRNA 1o0c B 74 2.7 RF00005 URS00004FF598_562 12691748 0030533 0006412 562 gggguaucgccaagcgguaaggcaccggauucugauuccggcauuccgagguucgaauccucguaccccagcca <<<<<<..<<<.........>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..(((.....[...))).(((((.......))))).....(((((..]....)))))))))))..... CRYSTAL STRUCTURE OF L-GLUTAMATE AND AMPCPP BOUND TO GLUTAMINE AMINOACYL TRNA SYNTHETASE; Glutaminyl tRNA 1p6v B 45 3.2 RF00023 URS000080E117_63363 12904796 0006401 63363 gauucgacggggacuucgguccucggacgcggguucgauucccgc .......<<<<<<<....>>>>>>>...<<<<<.......>>>>> .......(((((((....)))))))...(((((.......))))) Crystal structure of the tRNA domain of transfer-messenger RNA in complex with SmpB; 45-MER 1p6v D 24 3.2 RF00023 URS000080E117_63363 12904796 0006401 63363 ucgacggggacuucgguccucgga ....<<<<<<<....>>>>>>>.. ....(((((((....))))))).. Crystal structure of the tRNA domain of transfer-messenger RNA in complex with SmpB; 45-MER 1qd3 A 29 NA RF00250 URS000080DFB8_11676 10747964 0035195 0016442 11676 gccagauuugagccugggagcucucuggc <<<<<....<<<<......>>>>.>>>>> ((((((...((((......)))))))))) HIV-1 TAR RNA/NEOMYCIN B COMPLEX; HIV-1 TAR RNA 1qf6 B 76 2.9 RF00005 URS000022C879_562 10319817 0030533 0006412 562 gccgauauagcucagnnggnagagcagcgcauucgunaugcgaagnucguaggnucgacuccuauuaucggcacca <<<<<<<..<<<<........>>>>..<<<<.......>>>>......<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..))))..((((.......))))......(((((..]....)))))))))))).... STRUCTURE OF E. COLI THREONYL-TRNA SYNTHETASE COMPLEXED WITH ITS COGNATE TRNA; THREONINE TRNA 1qrs B 74 2.6 RF00005 URS00004FF598_562 8942633 0030533 0006412 562 gggguaucgccaagcgguaaggcaccggauucugauuccggcauuccgagguucgaauccucguaccccagcca <<<<<<..<<<.........>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..(((.....[...))).(((((.......))))).....(((((..]....)))))))))))..... GLUTAMINYL-TRNA SYNTHETASE MUTANT D235N COMPLEXED WITH GLUTAMINE TRANSFER RNA; TRNAGLN2 1qrt B 74 2.7 RF00005 URS00004FF598_562 8942633 0030533 0006412 562 gggguaucgccaagcgguaaggcaccggauucugauuccggcauuccgagguucgaauccucguaccccagcca <<<<<<..<<<.........>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..(((.....[...))).(((((.......))))).....(((((..]....)))))))))))..... GLUTAMINYL-TRNA SYNTHETASE MUTANT D235G COMPLEXED WITH GLUTAMINE TRANSFER RNA; TRNAGLN2 1qru B 74 3.0 RF00005 URS00004FF598_562 8942633 0030533 0006412 562 gggguaucgccaagcgguaaggcaccggauucugauuccggcauuccgagguucgaauccucguaccccagcca <<<<<<..<<<.........>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..(((.....[...))).(((((.......))))).....(((((..]....)))))))))))..... GLUTAMINYL-TRNA SYNTHETASE MUTANT I129T COMPLEXED WITH GLUTAMINE TRANSFER RNA; TRNAGLN2 1qtq B 74 2.25 RF00005 URS00004FF598_562 9562563 0030533 0006412 562 gggguaucgccaagcgguaaggcaccggauucugauuccggcauuccgagguucgaauccucguaccccagcca <<<<<<..<<<.........>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..(((.....[...))).(((((.......))))).....(((((..]....)))))))))))..... GLUTAMINYL-TRNA SYNTHETASE COMPLEXED WITH TRNA AND AN AMINO ACID ANALOG; RNA (TRNA GLN II ) 1qu2 T 75 2.2 RF00005 URS000080E234_1280 10446055 0030533 0006412 1280 gggcuuguagcucaggugguuagagcgcaccccugauaagggugaggucggugguucaaguccacucaggcccac <<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.. (((((((..((((.....[...)))).(((((.......))))).....(((((..]....)))))))))))).. INSIGHTS INTO EDITING FROM AN ILE-TRNA SYNTHETASE STRUCTURE WITH TRNA(ILE) AND MUPIROCIN; ISOLEUCYL-TRNA 1qu3 T 75 2.9 RF00005 URS000080E234_1280 10446055 0030533 0006412 1280 gggcuuguagcucaggugguuagagcgcaccccugauaagggugaggucggugguucaaguccacucaggcccac <<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.. (((((((..((((.....[...)))).(((((.......))))).....(((((..]....)))))))))))).. INSIGHTS INTO EDITING FROM AN ILE-TRNA SYNTHETASE STRUCTURE WITH TRNA(ILE) AND MUPIROCIN; ISOLEUCYL-TRNA 1qza B 75 10.0 RF00005 URS000080DF23_562 14566331 0030533 0006412 562 gcggauuuagcucaguugggagagcgccagacugaagaucuggagguccuguguucgauccacagaauucgcacc <<.<<<.<(<<<...)......>>>.<<<<<.......>>>>>....(<<<<<...)...>>>>>>>>>.>>... ((..(.(..(((..........)))..((((.......))))......((((.........)))).).).))... Coordinates of the A/T site tRNA model fitted into the cryo-EM map of EF-Tu ternary complex (GDP.Kirromycin) bound 70S ribosome; Phe-tRNA 1qzb B 75 9.0 RF00005 URS000011107D_562 14566331 0030533 0006412 562 cggauuuagcucaguugggagagcgccagacugaagaucuggagguccuguguucgauccacagaauucgcacca <<<<<.<.<<<.........(>>>.<<<<<.......>>>>>.....<<<<<......)>>>>>>>>>>>..... ((.((...((............)).((((.........)))).....((((.........)))).)).))..... Coordinates of the A-site tRNA model fitted into the cryo-EM map of 70S ribosome in the pre-translocational state; Phe-tRNA 1qzw B 47 4.1 RF01857,RF00169 URS000080DFB7_2287 14657338 0006617 0048501 2287 ngccgggggaaccggccaggcccggaagggagcaaccgugcccggun ..<<<<<......<<.....<<<....>>>.....>>...>>>>>.. ..(((((......((.....(((....))).....))...))))).. Crystal structure of the complete core of archaeal SRP and implications for inter-domain communication; 7S RNA 1qzw D 47 4.1 RF01857,RF00169 URS000080DFB7_2287 14657338 0006617 0048501 2287 ngccgggggaaccggccaggcccggaagggagcaaccgugcccggun ..<<<<<......<<.....<<<....>>>.....>>...>>>>>.. ..(((((......((.....(((....))).....))...))))).. Crystal structure of the complete core of archaeal SRP and implications for inter-domain communication; 7S RNA 1qzw F 47 4.1 RF01857,RF00169 URS000080DFB7_2287 14657338 0006617 0048501 2287 ngccgggggaaccggccaggcccggaagggagcaaccgugcccggun ..<<<<<......<<.....<<<....>>>.....>>...>>>>>.. ..(((((......((.....(((....))).....))...))))).. Crystal structure of the complete core of archaeal SRP and implications for inter-domain communication; 7S RNA 1qzw H 47 4.1 RF01857,RF00169 URS000080DFB7_2287 14657338 0006617 0048501 2287 ngccgggggaaccggccaggcccggaagggagcaaccgugcccggun ..<<<<<......<<.....<<<....>>>.....>>...>>>>>.. ..(((((......((.....(((....))).....))...))))).. Crystal structure of the complete core of archaeal SRP and implications for inter-domain communication; 7S RNA 1r2p A 34 NA RF00029 URS000080DF0B_4932 14745440 0000373 4932 gagccguaugcgaugaaagucgcacguacgguuc <<<<<<<..<<<<<....>>>>>....>>>>>>> (((((((..(((((....)))))....))))))) Solution structure of domain 5 from the ai5(gamma) group II intron; 34-MER 1ry1 E 49 12.0 RF00017,RF04277 URS000080E0CE_9615 14985753 0006617,0035195 0005786,0016442 9615 ggccgggcgcgguggcgcgcgccuguagucccagcuacucgggaggcuc <<<<<<<<<<<..(((.>>>>>>>....<<<<.)))....>>>>>>>>. (((((((((((..[[[.)))))))....((((.]]..]..)))))))). Structure of the signal recognition particle interacting with the elongation-arrested ribosome; SRP Alu domain 1ry1 A 128 12.0 RF00017,RF01856 URS000080DE1E_9615 14985753 0006617 0005786 9615 gacacuaaguucggcaucaauauggugaccucccgggagcgggggaccaccagguugccuaaggaggggugaaccggcccaggucggaaacggagcaggucaaaacucccgugcugaucaguagugun <<<<<<<.<.<<<<<<<<<<<.<<<<<..<<<<<<....>>>>>>..>>>>>.>>>>........<<<<<.....<<<<..<.<<<....>>>..>.>>>>...>>>>>.>>>>>>>.>..>>>>>>> ((((((..(.(((((((((((.(((((..((((((....))))))..))))).))))......(.(((((.....((((....(((....)))....))))...))))))))))))).)...)))))) Structure of the signal recognition particle interacting with the elongation-arrested ribosome; SRP S domain 1s9s A 101 NA RF00374 URS000080E0D7_11801 15003457 0019072 11801 ggcgguacuaguugagaaacuagcucuguaucuggcggacccgugguggaacugugaaguucggaacacccggccgcaacccugggagaggucccaggguu .<<<<..<<<<<<....>>>>>>..>>>>.....<<<<..<<<.<<<<<<<<<....>>>>>....>>>>>>>>>>><<<<<<<<<<....>>>>>>>>>> .((((..((((((....))))))..)))).....((((..(((.(((((((((....)))))....)))))))))))((((((((((....)))))))))) SOLUTION STRUCTURE OF MLV PSI SITE; MLV Psi encapsidation site 1ser T 65 2.9 RF00005 URS00000337BF_274 8128220 0030533 0006412 274 gaggugcccgaguggcngaagggagguaggggggccucccucgcgggnucgaaucccgcccucuc <<<<..<<<...........>>>....<<<<<<..>>>>>>.<<<<<.......>>>>>>>>>.. ((((..(((.....[.....)))(..)((((((())))))).(((((..]....))))))))).. THE 2.9 ANGSTROMS CRYSTAL STRUCTURE OF T. THERMOPHILUS SERYL-TRNA SYNTHETASE COMPLEXED WITH TRNA SER; TRNASER 1sz1 E 76 6.21 RF00005 URS000011107D_4932 15295590 0030533 0006412 4932 gcggauuuancucagnngggagagcnccaganunaagaunuggagnucnugugnucgnuccacagaauucgcacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).((((.........)))).....(((((..]....)))))))))))).... Mechanism of CCA-adding enzymes specificity revealed by crystal structures of ternary complexes; T-RNA (76-MER) 1sz1 F 76 6.21 RF00005 URS000011107D_4932 15295590 0030533 0006412 4932 gcggauuuancucagnngggagagcnccaganunaagaunuggagnucnugugnucgnuccacagaauucgcacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).((((.........)))).....(((((..]....)))))))))))).... Mechanism of CCA-adding enzymes specificity revealed by crystal structures of ternary complexes; T-RNA (76-MER) 1tn1 A 76 3.0 RF00005 URS000011107D_4932 3907691 0030533 0006412 4932 gcggauuuancucagnngggagagcnccaganunaagaunuggagnucnugugnucgnuccacagaauucgcacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).((((.........)))).....(((((..]....)))))))))))).... CRYSTALLOGRAPHIC AND BIOCHEMICAL INVESTIGATION OF THE LEAD(II)-CATALYZED HYDROLYSIS OF YEAST PHENYLALANINE TRNA; TRNAPHE 1tn2 A 76 3.0 RF00005 URS000011107D_4932 3907691 0030533 0006412 4932 gcggauuuancucagnngggagagcnccaganunaagaunuggagnucnugugnucgnuccacagaauucgcacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).((((.........)))).....(((((..]....)))))))))))).... CRYSTALLOGRAPHIC AND BIOCHEMICAL INVESTIGATION OF THE LEAD(II)-CATALYZED HYDROLYSIS OF YEAST PHENYLALANINE T-RNA; TRNAPHE 1tra A 76 3.0 RF00005 URS000011107D_4932 3533142 0030533 0006412 4932 gcggauuuancucagnngggagagcnccaganunaagaunuggagnucnugugnucgnuccacagaauucgcacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).((((.........)))).....(((((..]....)))))))))))).... RESTRAINED REFINEMENT OF THE MONOCLINIC FORM OF YEAST PHENYLALANINE TRANSFER RNA. TEMPERATURE FACTORS AND DYNAMICS, COORDINATED WATERS, AND BASE-PAIR PROPELLER TWIST ANGLES; TRNAPHE 1ttt D 76 2.7 RF00005 URS000011107D_4932 7491491 0030533 0006412 4932 gcggauuuancucagnngggagagcnccaganunaanaunuggagnucnugugnucgnuccacagaauucgcacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).((((.........)))).....(((((..]....)))))))))))).... Phe-tRNA, elongation factoR EF-TU:GDPNP ternary complex; TRANSFER RIBONUCLEIC ACID (YEAST, PHE) 1ttt E 76 2.7 RF00005 URS000011107D_4932 7491491 0030533 0006412 4932 gcggauuuancucagnngggagagcnccaganunaanaunuggagnucnugugnucgnuccacagaauucgcacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).((((.........)))).....(((((..]....)))))))))))).... Phe-tRNA, elongation factoR EF-TU:GDPNP ternary complex; TRANSFER RIBONUCLEIC ACID (YEAST, PHE) 1ttt F 76 2.7 RF00005 URS000011107D_4932 7491491 0030533 0006412 4932 gcggauuuancucagnngggagagcnccaganunaanaunuggagnucnugugnucgnuccacagaauucgcacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).((((.........)))).....(((((..]....)))))))))))).... Phe-tRNA, elongation factoR EF-TU:GDPNP ternary complex; TRANSFER RIBONUCLEIC ACID (YEAST, PHE) 1txs A 38 NA RF00386 URS000080E006_32630 15379536 0039689 32630 gggcuagcacucugguauuacgguaccuuugugcgccc <<<<..<<<<...<<<<<....>>>>>...>>>>>>>> ((((..((((...(((((....)))))...)))))))) STEM-LOOP D OF THE CLOVERLEAF DOMAIN OF ENTEROVIRAL 5'UTR RNA; Enteroviral 5'-UTR 1u0b A 74 2.3 RF00005 URS000003E908_562 15489861 0030533 0006412 562 ggcgcguuaacaaagcgguuauguagcggauugcaaauccgucuaguccgguucgacuccggaacgcgccucca <<<<<<<..<<<.........>>>.<<<<<<.....>>>>>>....<<<<<.......>>>>>>>>>>>>.... (((((((..(((.........))).(((((.......)))))....(((((.......)))))))))))).... Crystal structure of cysteinyl-tRNA synthetase binary complex with tRNACys; cysteinyl tRNA 1u6b B 197 3.1 RF00028 URS000080E37C_32630 15175762 0000372 32630 ngccgugugccuugcgccgggaaaccacgcaagggauggugucaaauucggcgaaaccuaagcgcccgcccgggcguauggcaacgccgagccaagcuucgcagccauugcacuccggcugcgaugaagguguagagacuagacggcacccaccuaaggcaaacgcuauggugaaggcauaguccagggaguggcgn .........<<<<<<<..<<....>>.>>>>>>>...<<<<<<....<<<<<<...<<...<<<<<<....>>>>>>..>>...>>>>>><<<...<.<<<<<<<<..........>>>>>>>>.>..>>>.....(((((...>>>>>><<<<...<<<....>>>..>>>>......)))))............. .........(((((((..((....)).)))))))...((((((....((((((...((...((((((....))))))..))...))))))(((...(.((((((((..........)))))))).)..)))...[.[[[[[...))))))((((..((((....))).)))))......]]]]]]............ CRYSTAL STRUCTURE OF A SELF-SPLICING GROUP I INTRON WITH BOTH EXONS; 197-MER 1u6p B 101 NA RF00374 URS000080E0D7_11801 15457265 0019072 11801 ggcgguncuaguugagaaacuagcucuguaucuggcggacccgugguggaacugugaaguucggaacacccggccgcaacccugggagaggucccaggguu .<<<<..<<<<<<....>>>>>>..>>>>.....<<<<..<<<.<<<<<<<<<....>>>>>....>>>>>>>>>>><<<<<<<<<<....>>>>>>>>>> .((((..((((((....))))))..)))).....((((..(((.(((((((((....)))))....)))))))))))((((((((((....)))))))))) NMR Structure of the MLV encapsidation signal bound to the Nucleocapsid protein; 101-MER 1u9s A 155 2.9 RF00010 URS000080E141_274 15459389 3.1.26.5 0004526 0008033 0030680 274 ggugccagguaacgccugggcgggguaacccgacggaaagugccacagagaagagaccgccagcggccggggccccggugcgggcaagggugaaacggcgggguaagagcccaccgccuggccuggcaacaggccggggcacggcaaaccccacc <<<<<<<<<.....>>>>>.<<<<....>>>>..<<...<<<<<............<<<<<..<<<<<<<<..>>>>>>.>>>>>..>>.......<<.<<<.......>>>.>>.<<<<<<<<<....>>>>>>>>>....>>>..>>>>>>>> (((((((((.....)))))(((((....)))).)((...(((((............(((((..((.(((((())))))..)))))..)).......((.(((.......))).))((((((((((....))))))))).)..)))..)))))))) Crystal structure of the specificity domain of Ribonuclease P of the A-type; RIBONUCLEASE P 1vfg C 31 2.8 RF00005 URS000080DFBA_2336 15295603 0030533 0006412 2336 ggccaggggcgguucgauuccgccccuggcc <<<<<<<<<<<<.......>>>>>>>>>>>> (((((((((((.........))))))))))) Crystal structure of tRNA nucleotidyltransferase complexed with a primer tRNA and an incoming ATP analog; RNA (75-MER) 1vfg D 34 2.8 RF00005 URS000080DFBA_2336 15295603 0030533 0006412 2336 ggccaggggcgguucgauuccgccccuggccacc <<<<<<<<<<<<.......>>>>>>>>>>>>... ((((((((((((.......))))))))))))... Crystal structure of tRNA nucleotidyltransferase complexed with a primer tRNA and an incoming ATP analog; RNA (75-MER) 1vtq A 75 3.0 RF00005 URS00005AD0B9_32630 0030533 0006412 32630 uccgugauaguuuaanggncagaaugggcgcuugucncgugccagaunggggnucaauuccccgucgcggagcca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>....<<<<<.......>>>>>>>>>>>>.... (((((((..(((..........))).(((((.......)))))....(((((.......)))))))))))).... THREE-DIMENSIONAL STRUCTURE OF YEAST T-RNA-ASP. I. STRUCTURE DETERMINATION; T-RNA-ASP 1vvj QV 77 3.44 RF00005 URS000041AF00_1110693 25128388 0030533 0006412 1110693 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome; P-site tRNA fMet 1vvj XV 77 3.44 RF00005 URS000041AF00_1110693 25128388 0030533 0006412 1110693 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome; P-site tRNA fMet 1vy4 AW 74 2.6 RF00005 URS00005AA258_562 25132179 0030533 0006412 562 gcccgganagcucaggguagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcaccn <<<<<<<..<<<<......>>>><<<<<<<.....>>>>>>.>...<<<<<.......>>>>>>>>>>>>.... .((((((..((((......)))).((((.........)))).....(((((.......)))))))))))..... Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.; A-site tRNA 1vy4 AX 76 2.6 RF00005 URS000041AF00_562 25132179 0030533 0006412 562 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaaccn <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.; P-site tRNA 1vy4 AY 74 2.6 RF00005 URS00005AA258_562 25132179 0030533 0006412 562 gcccgganagcucaggguagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<......>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((...[..)))).((((.........)))).....(((((..]....)))))))))))).... Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.; E-site tRNA 1vy4 CW 72 2.6 RF00005 URS00005AA258_562 25132179 0030533 0006412 562 cccgganagcucagggagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcaccn <<<<<<..<<<<.....>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>..... ((.(((..((((...[.)))).((((.........)))).....(((((..]....)))))))).))..... Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.; A-site tRNA 1vy4 CX 76 2.6 RF00005 URS000041AF00_562 25132179 0030533 0006412 562 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaaccn <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.; P-site tRNA 1vy4 CY 73 2.6 RF00005 URS00005AA258_562 25132179 0030533 0006412 562 gcccgganagcucagggagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<.....>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....)))).((((.........)))).....((.((.......)).))))))))).... Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.; E-site tRNA 1vy5 AW 74 2.55 RF00005 URS00005AA258_562 25132179 0030533 0006412 562 gcccgganagcucaggguagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcaccn <<<<<<<..<<<<......>>>><<<<<<<.....>>>>>>.>...<<<<<.......>>>>>>>>>>>>.... (((((((..((((...[..)))).((((.........)))).....(((((..]....)))))))))))).... Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.; A-site tRNA 1vy5 AX 76 2.55 RF00005 URS000041AF00_562 25132179 0030533 0006412 562 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.; P-site tRNA 1vy5 AY 74 2.55 RF00005 URS00005AA258_562 25132179 0030533 0006412 562 gcccgganagcucaggguagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<......>>>>.<<<<<<<...>>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((......)))).((((.........)))).....(((((.......)))))))))))).... Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.; E-site tRNA 1vy5 CW 72 2.55 RF00005 URS00005AA258_562 25132179 0030533 0006412 562 cccgganagcucagggagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcaccn <<<<<<..<<<<.....>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((...[.)))).((((.........)))).....(((((..]....)))))))))))..... Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.; A-site tRNA 1vy5 CX 76 2.55 RF00005 URS000041AF00_562 25132179 0030533 0006412 562 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.; P-site tRNA 1vy5 CY 73 2.55 RF00005 URS00005AA258_562 25132179 0030533 0006412 562 gcccgganagcucagggagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<.....>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....)))).((((.........)))).....((.((.......)).))))))))).... Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.; E-site tRNA 1vy6 AX 76 2.9 RF00005 URS000041AF00_562 25132179 0030533 0006412 562 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaaccn <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.; P-site tRNA 1vy6 CX 76 2.9 RF00005 URS000041AF00_562 25132179 0030533 0006412 562 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaaccn <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.; P-site tRNA 1vy7 AX 76 2.8 RF00005 URS000041AF00_562 25132179 0030533 0006412 562 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaaccn <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.; P-site tRNA 1vy7 CX 76 2.8 RF00005 URS000041AF00_562 25132179 0030533 0006412 562 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaaccn <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......)))))......((((..]....)))).))))))..... Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.; P-site tRNA 1wz2 C 88 3.21 RF00005 URS00000E7B03_70601 0030533 0006412 70601 gcggggguugccgagccuggucaaaggcgggggacucaagauccccucccguagggguuccgggguucgaauccccgcccccgcacca <<<<<<<..<<<.............>>><<<<<<.......>>>>>><<<....>>>...<<<<<.......>>>>>>>>>>>>.... (((((((..(((.......[.....))).(((((.......))))).(((....)))...(((((..]....)))))))))))).... The crystal structure of Leucyl-tRNA synthetase and tRNA(leucine) complex; tRNA 1wz2 D 88 3.21 RF00005 URS00000E7B03_70601 0030533 0006412 70601 gcggggguugccgagccuggucaaaggcgggggacucaagauccccucccguagggguuccgggguucgaauccccgcccccgcacca <<<<<<<..<<<.............>>><<<<<<.......>>>>>><<<....>>>...<<<<<.......>>>>>>>>>>>>.... (((((((..(((.......[.....))).(((((.......))))).(((....)))...(((((..]....)))))))))))).... The crystal structure of Leucyl-tRNA synthetase and tRNA(leucine) complex; tRNA 1x8w A 242 3.8 RF00028 URS000080DD33_5911 15525509 0000372 5911 gaccgucaaauugcgggaaaggggucaacagccguucaguaccaagucucaggggaaacuuugagauggccuugcaaaggguaugguaauaagcugacggacaugguccuaaccgcgcagccaaguccuaagucaacaggagacuguugauauggaugcaguacacagacuagaugucggccggggaagaucuucucauaagguauagucggaccucucccgaaagggaguuggaguacucg [.(((.(....<<<<<<...<<<<<<.....<<<.<<<<.<<...<<<<<<<<<....>>>>>>>>>..<<.......>>.....>>......>>>>>>>....>>>>>>..>>.>>>><<...<<<<...<<<<<<<<....>>>>>>>>..>>>>...>>.....<<<<<...).))).].<<<<<<..>>>>>>........>>>>>...<<.<<<<<....>>>>>..>>........ [.[[[.[....((((((....(((((.....(((.((((.(((..(((((((((....)))))))))..((.......))....)))......)))))))....)))))...)).))))((...((((....(((((((....)))))))...))))...)).....(((((...].]]].].((((((..))))))........))))).(.((.(((((....)))))..))......). Structure of the Tetrahymena Ribozyme: Base Triple Sandwich and Metal Ion at the Active Site; Tetrahymena ribozyme RNA 1x8w B 247 3.8 RF00028 URS000080DD33_5911 15525509 0000372 5911 gaccgucaaauugcgggaaaggggucaacagccguucaguaccaagucucaggggaaacuuugagauggccuugcaaaggguaugguaauaagcugacggacaugguccuaaccgcgcagccaaguccuaagucaacaggagacuguugauauggaugcaguacacagacuagaugucggccggggaagauguauucuucucauaagguauagucggaccucucccgaaagggaguuggaguacucg [.(((.(....<<<<<<...<<<<<<.....<<<.<<<<.<<...<<<<<<<<......>>>>>>>>..<<.......>>.....>>......>>>>>>>....>>>>>>..>>.>>>><<...<<<<...<<<<<<<<....>>>>>>>>..>>>>...>>.....<<<<<...).))).].<<<<<<.......>>>>>>........>>>>>...<<.<<<<<....>>>>>..>>........ [.[[[.[....((((((...((((((.....(((.((((.(((..(((((((((....)))))))))..((.......))....)))......)))))))....))))))..)).))))((...((((....(((((((....)))))))...))))...))...(.(((((...].]]].].((((((.......))))))........))))))(.((.(((((....)))))..))......). Structure of the Tetrahymena Ribozyme: Base Triple Sandwich and Metal Ion at the Active Site; Tetrahymena ribozyme RNA 1x8w C 237 3.8 RF00028 URS000080DD33_5911 15525509 0000372 5911 gaccgucaaauugcgggaaaggggucaacagccguucaguaccaagucucaggggaaacuuugagauggccuugcaaaggguaugguaauaagcugacggacaugguccuaaccgcgcagccaaguccuaagucaacaggagacuguugauauggaugcaguacacagacuagaugucggccggggaagaucuucucauaagguauagucggaccucucccgaaagggaguuggucg [.(((.(....<<<<<<...<<<<<<.....<<<.<<<<.<<...<<<<<<<<<....>>>>>>>>>..<<.......>>.....>>......>>>>>>>....>>>>>>..>>.>>>><<...<<<<...<<<<<<<<....>>>>>>>>..>>>>...>>.....<<<<<...).))).].<<<<<<..>>>>>>........>>>>>.<<<<.<<<<<....>>>>>..>>>>. [.[[[......((((((...(((.((.....(((.((((.(((..((((((.((....)).))))))..((.......))....)))......)))))))....)).)))..)).))))((...((((..(((((((((....)))))))).)))))...))...(.(((((.....]]].].(.((((())))).)........))))))((((.(((((....)))))..)))). Structure of the Tetrahymena Ribozyme: Base Triple Sandwich and Metal Ion at the Active Site; Tetrahymena ribozyme RNA 1x8w D 242 3.8 RF00028 URS000080DD33_5911 15525509 0000372 5911 gaccgucaaauugcgggaaaggggucaacagccguucaguaccaagucucaggggaaacuuugagauggccuugcaaaggguaugguaauaagcugacggacaugguccuaaccgcgcagccaaguccuaagucaacaggagacuguugauauggaugcaguacacagacuagaugucggccggggaagaucuucucauaagguauagucggaccucucccgaaagggaguuggaguacucg [.(((.(....<<<<<<...<<<<<<.....<<<.<<<<.<<...<<<<<<<<<....>>>>>>>>>..<<.......>>.....>>......>>>>>>>....>>>>>>..>>.>>>><<...<<<<...<<<<<<<<....>>>>>>>>..>>>>...>>.....<<<<<...).))).].<<<<<<..>>>>>>........>>>>>.<<<<.<<<<<....>>>>>..>>.....>>. [.[[[.[....((((((...((((((.....(((.((((.(((..((((((.((....)).))))))..((.......))....)))......)))))))....))))))..)).))))((...((((...((((((((....))))))))..))))...))...(.(((((...].]]].].((((((..))))))........))))))(.((.(((((....)))))..))......). Structure of the Tetrahymena Ribozyme: Base Triple Sandwich and Metal Ion at the Active Site; Tetrahymena ribozyme RNA 1y0q A 229 3.6 RF00028 URS000080E2FF_55510 15580277 0000372 55510 gagccuuuauacaguaauguauaucgaaaaauccucuaauucagggaacaccuaaggcaauccugagcuaagcucuuaguaauaagagaaagugcaacgacuauuccgauaggaaguagggucaagugacucgaaauggggauuacccuucuaggguagugauauagucugaacauauauggaaacauauagaaggauaggaguaacgaaccuauccguaacauaauug .......<<<<<<....>>>>>>.......<<<<<<....<<<<<<....<<<.>>>...>>>>>><<<...<<<<<<....>>>>>>..>>>.....((((.<<<<....>>>>...<<<<<..[[>>>>>.....>>>>>><<<<<<...>>>>>>.......))))..<<..<<<<<<....>>>>>>...<<<<<<<....]]...>>>>>>>.........>>. ....(..((((((....))))))..)....((((((....((((((....(((.)))...))))))(((...((((((....))))))..)))...[.[[[[[((((....))))...(((((..{{))))).....))))))(((((.....)))))......]]]]]].((..((((((....))))))...(((((((....}}...))))))).........)). Crystal structure of an active group I ribozyme-product complex; Group I ribozyme 1y26 X 71 2.1 RF00167 URS000080DF85_672 15610857 0009113 672 cgcuucauauaauccuaaugauaugguuugggaguuucuaccaagagccuuaaacucuugauuaugaagug .<<<<<<<<...<<<<<<......<<.>>>>>>........<<<<<<>>.....>>>>>>..>>>>>>>>. ((((((((((..((((((......[[.))))))[.....)]((((((]].....))))))..))))))))) A-riboswitch-adenine complex; Vibrio vulnificus A-riboswitch 1y27 X 68 2.4 RF00167 URS000080DF8E_1423 15610857 0009113 1423 ngaucauauaaucgcguggauauggcacgcaaguuucuaccgggcaccguaaauguccgacuauggun .<<<<<<<...<.<<<<<.....<<>>>>>.>........<<<<<<>>.....>>>>>>..>>>>>>> .((((((((..(.(((((.....[[))))).)[.....)]((((((]].....))))))..))))))) G-riboswitch-guanine complex; Bacillus subtilis xpt 1yfg A 75 3.0 RF00005 URS00002CB170_4932 1915284 0030533 0006412 4932 agcgccgunncgcagnggaagcgcncagggcucaunacccugaunnnnucggaucgnaaccgngcggcgcuacca <<<<<<<..<<<<.......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((....[..)))).(((((.......))))).....(((((..]....)))))))))))).... YEAST INITIATOR TRNA; YEAST INITIATOR TRNA 1z2j A 45 NA RF00480 URS000080E22A_11676 15927637 0075523 11676 gggaagaucuggccuucccacaagggaaggccagggaaucuuccc <<<<<<<<<<<<<<<<<<<....>>>>>>>>>>>...>>>>>>>> (((((((((((((((((((....)))))))))))...)))))))) Solution structure of the HIV-1 frameshift inducing element; HIV-1 frameshift site RNA 1z43 A 101 2.6 RF00169 URS000080DED9_2190 15928341,12050674 0006617 0048501 2190 gcucggcggugggggagcaucuccuguaggggagauguaacccccuuuaccugccgaaccccgccaggcccggaagggagcaacgguaggcaggacgucgg ..<<<<<<..<<<<<.<<<<<<<<<....>>>>>>>>>..>>>>>....<<<<<<.....<<<.....<<<....>>>.....>>>..>>>>>>.>>>>>> ..((((((..(((((..((((((((....))))))))...)))))....((((((.....(((.....(((....))).....)))..)))))).)))))) Crystal structure of 7S.S SRP RNA of M. jannaschii; RNA (101-MER) 1zc5 A 41 NA RF00480 URS000080DFC4_32630 15907937 0075523 32630 ggcgaucuggccuuccuacaagggaaggccagggaauugcc <<<<<<<<<<<<<<<<<....>>>>>>>>>>>...>>>>>> (((((((((((((((((....)))))))))))...)))))) Structure of the RNA signal essential for translational frameshifting in HIV-1; HIV-1 frameshift RNA signal 1zc8 A 59 13.0 RF00023 URS000080E10D_274 12677067 0006401 274 ggggcugauucuggauucgacgggauauuucggacgcggguucaacucccgccagcucc <<<<<<<..<...>.<....<<<<<<>>>>>>.>.<<<<<.......>>>>>>>>>>>> ((.((((.............((..(..)..))...((((.........)))))))).)) Coordinates of tmRNA, SmpB, EF-Tu and h44 fitted into Cryo-EM map of the 70S ribosome and tmRNA complex; TLD 16S ribosomal RNA 1zjw B 74 2.5 RF00005 URS0000115891_562 15845536 0030533 0006412 562 gggguaucgccaagcgguaaggcaccggauucugauuccggcauuccgagguucgaauccucguaccccagcca <<<<<<..<<<.........>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..(((.....[...))).(((((.......))))).....(((((..]....)))))))))))..... Glutaminyl-tRNA synthetase complexed to glutamine and 2'deoxy A76 glutamine tRNA; Glutaminyl-tRNA 1zo1 F 76 13.8 RF00005 URS000011107D_562 15935757 0030533 0006412 562 gcggauuuagcucaguugggagagcgccagacugaagaucuggagguccuguguucgauccacagaauucgcacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).((((.........)))).....(((((..]....)))))))))))).... IF2, IF1, and tRNA fitted to cryo-EM data OF E. COLI 70S initiation complex; P/I-site tRNA 1zo3 A 76 13.8 RF00005 URS000011107D_562 15935757 0030533 0006412 562 gcggauuuagcucaguugggagagcgccagacugaagaucuggagguccuguguucgauccacagaauucgcacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).((((.........)))).....(((((..]....)))))))))))).... The P-site and P/E-site tRNA structures fitted to P/I site codon.; tRNA 1zo3 B 76 13.8 RF00005 URS000011107D_562 15935757 0030533 0006412 562 gcggauuuagcucaguugggagagcgccagacugaagaucuggagguccuguguucgauccacagaauucgcacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).((((.........)))).....(((((..]....)))))))))))).... The P-site and P/E-site tRNA structures fitted to P/I site codon.; tRNA 1zzn B 197 3.37 RF00028 URS000080E37C_32630 16141079,15175762,15547134,6101203 0000372 32630 ngccgugugccuugcgccgggaaaccacgcaagggauggugucaaauucggcgaaaccuaagcgcccgcccgggcguauggcaacgccgagccaagcuucgcagccauugcacuccggcugcgaugaagguguagagacuagacggcacccaccuaaggcaaacgcuauggugaaggcauaguccagggaguggcgn .........<<<<<<<..<<....>>.>>>>>>>...<<<<<<....<<<<<<...<<...<<<<<<....>>>>>>..>>...>>>>>><<<.....<<<<<<<<..........>>>>>>>>....>>>.....(((((...>>>>>><<<<...<<<....>>>..>>>>......)))))............. .........(((((((..((....)).)))))))...((((((....((((((...((...((((((....))))))..))...))))))(((...(.((((((((..........)))))))).)..)))...[.[[[[[...))))))((((...(((....)))..))))......]]]]]]............ Crystal structure of a group I intron/two exon complex that includes all catalytic metal ion ligands.; 197-MER 2a2e A 304 3.85 RF00010 URS0000292A32_2336 16113684 3.1.26.5 0004526 0008033 0030680 2336 ggagaggagcaggcgguccgggggcgcgcgcuucccgaggaaaguccggacucuggagcggggugccggguaacgcccgggaggggugacccucggacagggccauagagaagaccgccggcaaggguggaacggugggguaagagcccaccagcgucggggcaacccggcggcuuggcaacccccaccuggagcaaggccaagggggugggcgcuccuacccccuuggccgcuugaggugugcgguaacgcacaccccagauugaugaccgcccacgacagaauccggcuuaugcuccucucc <<<<<<<<<<.<<<<<<<<<<<<<<<..>>>.>>>>>....((((..[[[<<<...((((...<.<<<<<.....>>>>><<<<<....>>>>><<...<<<<<..........<<<<..>>..>>.......<<<<<<.......>>>>>>..<<<<<<<....>>>>>>>....>>>..>>>>.>....>>>...<<<<<..<<<<<<<.)))).>>>>>>>..>>>>>......<<<<<<<<....>>>>>>>.>.........>>>>>>>..........]]].))))..>>>>>>>>>> ((((((((((.(((((((((((.(((())))..))))....[[[.[.[[[.(((..[[[[.....(((((.....)))))(((((....)))))((...(((((..........((((()))..)).......((((((.......))))))(.(((((((....)))))))..).)))..)))).....)))....(((((.(((((..((]]]]))..))))).)))))......((((((((....))))))).).........)))))))..........]]].]]]]..)))))))))) Crystal structure of the RNA subunit of Ribonuclease P. Bacterial A-type.; RNA subunit of RNase P 2a64 A 298 3.3 RF00011 URS000080DD3C_1422 16157868 3.1.26.5 0004526 0008033 0030680 1422 guuaaucaugcucggguaaucgcugcggccgguuucggccguagaggaaaguccaugcucgcacggugcugagaugcccguaguguucgugccuagcgaauccauaagcuagggcagccggcugacggcgggcccugaaagugccgguaaaccccacgagcgagaaacccaaauaggggcaccuucccgaaggaaaugaacggagggaaggacaggcggcgcaugcagccuguagauagaugauuaccgccggaguacguacgaagguacagaacauggcuuauagagcaugauuaac .<<<<<<<<<<<<.<<<<<<<.<<<<<<<<<<..>>>>>>>>>>.{...[[.(((((<<<<<<<<<.<<......>>>>>>.....<<<<<<<<<<<..........>>>>>>.<<<<..>>>>..<<.<<..>>.....<<.<<>>...>>>>>>>>>>>>>>...<<<.....>>>...<<<<<<<...<........>...>>>>>>><<<<<<..........>>>>>>........>>>>>>><<<...<<<..>>>...>>>.}....)))))]]....>>>>>>>>>>>>. ..(((((((((((((((((((.(((((((((....))))))))).{...[[.[[[[[(((((((((.((......)))))).....(((((((((((..........))))))(((((())))).)((.((())).....((.(())...))))))))))))))...(((.....)))...(((((((...(........)...)))))))((((((..........))))))........))))))).((...(.(()).)...))..}....]]]]]]]..).))))))))))).. Crystal Structure of Bacterial Ribonuclease P RNA; ribonuclease P RNA 2ake B 72 3.1 RF00005 URS0000669B12_9913 16798914 0030533 0006412 9913 gaccucguggcgcaaugguagcgcgucugacuccagaucagaagguugcguguucgaaucacgucgggguca <<<<<<<..<<<.........>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>. (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))). Structure of human tryptophanyl-tRNA synthetase in complex with tRNA(Trp); transfer RNA-Trp 2azx C 72 2.8 RF00005 URS00002CF5C7_9913 16724112 0030533 0006412 9913 gaccucguggcgcaaugguagcgcgucugacuccagaucagaagguugcguguucgaaucacgucgggguca <<<<<<<..<<<<.......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>. (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))). Charged and uncharged tRNAs adopt distinct conformations when complexed with human tryptophanyl-tRNA synthetase; 72-MER 2azx D 72 2.8 RF00005 URS00002CF5C7_9913 16724112 0030533 0006412 9913 gaccucguggcgcaaugguagcgcgucugacuccagaucagaagguugcguguucgaaucacgucgggguca <.<<<<<..<<<<.......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>.>. ..((.((..((((....[..)))).(((((.......))))).....(((((..]....))))))).))... Charged and uncharged tRNAs adopt distinct conformations when complexed with human tryptophanyl-tRNA synthetase; 72-MER 2b57 A 65 2.15 RF00167 URS000080E0EB_1423 16650860 0009113 1423 gacauauaaucgcguggauauggcacgcaaguuucuaccgggcaccguaaauguccgauuauguc <<<<<<...<.<<<<<.....<<>>>>>.>........<<<<<<>>.....>>>>>>..>>>>>> (((((((..(.(((((.....[[))))).)[.....)]((((((]].....))))))..)))))) Guanine Riboswitch C74U mutant bound to 2,6-diaminopurine; 65-MER 2bte B 78 2.9 RF00005 URS000080E1BC_274 16155583 0030533 0006412 274 gccgggguggcggaauggguagacgcgcaugacaucaugugcgcaagcgugcggguucaagucccgcccccggcacca <<<<<<<..<<<...........>>><<<<<<..>>>>>><<....>>..<<<<<.......>>>>>>>>>>>>.... (((((((..(((......[....)))((((((..))))))((....))..(((((..]....)))))))))))).... Thermus thermophilus Leucyl-tRNA synthetase complexed with a tRNAleu transcript in the post-editing conformation and a post- transfer editing substrate analogue; TRNALEU TRANSCRIPT WITH ANTICODON CAG 2bte E 78 2.9 RF00005 URS000080E1BC_274 16155583 0030533 0006412 274 gccgggguggcggaauggguagacgcgcaugacaucaugugcgcaagcgugcggguucaagucccgcccccggcacca <<<<<<<..<<<...........>>><<<<<<..>>>>>><<....>>..<<<<<.......>>>>>>>>>>>>.... (((((((..(((......[....)))((((((..))))))((....))..(((((..]....)))))))))))).... Thermus thermophilus Leucyl-tRNA synthetase complexed with a tRNAleu transcript in the post-editing conformation and a post- transfer editing substrate analogue; TRNALEU TRANSCRIPT WITH ANTICODON CAG 2byt B 78 3.3 RF00005 URS000080E1BC_274 16155583 0030533 0006412 274 gccgggguggcggaauggguagacgcgcaugacaucaugugcgcaagcgugcggguucaagucccgcccccggcacca <<<<<<<..<<<...........>>><<<<<<..>>>>>><<....>>..<<<<<.......>>>>>>>>>>>>.... (((((((..(((......[....)))((((((..))))))((....))..(((((..]....)))))))))))).... Thermus thermophilus Leucyl-tRNA synthetase complexed with a tRNAleu transcript in the post-editing conformation; TRNALEU TRANSCRIPT WITH ANTICODON CAG 2byt E 78 3.3 RF00005 URS000080E1BC_274 16155583 0030533 0006412 274 gccgggguggcggaauggguagacgcgcaugacaucaugugcgcaagcgugcggguucaagucccgcccccggcacca <<<<<<<..<<<...........>>><<<<<<..>>>>>><<....>>..<<<<<.......>>>>>>>>>>>>.... (((((((..(((......[....)))((((((..))))))((....))..(((((..]....)))))))))))).... Thermus thermophilus Leucyl-tRNA synthetase complexed with a tRNAleu transcript in the post-editing conformation; TRNALEU TRANSCRIPT WITH ANTICODON CAG 2csx C 75 2.7 RF00005 URS000080E079_63363 16155581 0030533 0006412 63363 ggcggcguagcucagcuggucagagcggggaucucauaagucccaggucggagguucgaguccucccgccgccac <<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.. (((.(((..((((.........)))).(((((.......))))).....(((((.......)))))))).))).. Crystal structure of Aquifex aeolicus methionyl-tRNA synthetase complexed with tRNA(Met); RNA (75-MER) 2csx D 75 2.7 RF00005 URS000080E079_63363 16155581 0030533 0006412 63363 ggcggcguagcucagcuggucagagcggggaucucauaagucccaggucggagguucgaguccucccgccgccac <<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.. (((.(((..((((.........)))).((((.........)))).....(((((.......)))))))).))).. Crystal structure of Aquifex aeolicus methionyl-tRNA synthetase complexed with tRNA(Met); RNA (75-MER) 2ct8 C 74 2.7 RF00005 URS000051626E_63363 16155581 0030533 0006412 63363 ggcggcguagcucagcuggucagagcggggaucucauaagucccaggucggagguucgaguccucccgccgcca <<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>. (((((((..((((.....[...)))).(((((.......))))).....(((((..]....)))))))))))). Crystal structure of Aquifex aeolicus methionyl-tRNA synthetase complexed with tRNA(Met) and methionyl-adenylate anologue; RNA (74-MER) 2ct8 D 74 2.7 RF00005 URS000051626E_63363 16155581 0030533 0006412 63363 ggcggcguagcucagcuggucagagcggggaucucauaagucccaggucggagguucgaguccucccgccgcca <<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>. (((((((..((((.....[...)))).(((((.......))))).....(((((..]....)))))))))))). Crystal structure of Aquifex aeolicus methionyl-tRNA synthetase complexed with tRNA(Met) and methionyl-adenylate anologue; RNA (74-MER) 2cv0 C 75 2.4 RF00005 URS000052BB59_274 17161369 0030533 0006412 274 ggccccaucgucuagcgguuaggacgcggcccucucaaggccgaaacggggguucgauucccccuggggucacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>....<<<<<.......>>>>>>>>>>>>.... (((((((..((((....[...)))).(((((.......)))))....(((((..]....)))))))))))).... Glutamyl-tRNA synthetase from Thermus thermophilus in complex with tRNA(Glu) and L-glutamate; tRNA 2cv0 D 75 2.4 RF00005 URS000052BB59_274 17161369 0030533 0006412 274 ggccccaucgucuagcgguuaggacgcggcccucucaaggccgaaacggggguucgauucccccuggggucacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>....<<<<<.......>>>>>>>>>>>>.... (((((((..((((....[...)))).(((((.......)))))....(((((..]....)))))))))))).... Glutamyl-tRNA synthetase from Thermus thermophilus in complex with tRNA(Glu) and L-glutamate; tRNA 2cv1 C 75 2.41 RF00005 URS000052BB59_274 0030533 0006412 274 ggccccaucgucuagcgguuaggacgcggcccucucaaggccgaaacggggguucgauucccccuggggucacca .<<<<<<..<<<<........>>>>.<<<<<.......>>>>>....<<<<<.......>>>>>>>>>>>..... (((((((..((((....[...)))).(((((.......)))))....(((((..]....)))))))))))).... Glutamyl-tRNA synthetase from Thermus thermophilus in complex with tRNA(Glu), ATP, and an analog of L-glutamate: a quaternary complex; tRNA 2cv1 D 75 2.41 RF00005 URS000052BB59_274 0030533 0006412 274 ggccccaucgucuagcgguuaggacgcggcccucucaaggccgaaacggggguucgauucccccuggggucacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>....<<<<<.......>>>>>>>>>>>>.... (((((((..((((....[...)))).(((((.......)))))....(((((..]....)))))))))))).... Glutamyl-tRNA synthetase from Thermus thermophilus in complex with tRNA(Glu), ATP, and an analog of L-glutamate: a quaternary complex; tRNA 2cv2 C 75 2.69 RF00005 URS000052BB59_274 17161369 0030533 0006412 274 ggccccaucgucuagcgguuaggacgcggcccucucaaggccgaaacggggguucgauucccccuggggucacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>....<<<<<.......>>>>>>>>>>>>.... (((((((..((((....[...)))).(((((.......)))))....(((((..]....)))))))))))).... Glutamyl-tRNA synthetase from Thermus thermophilus in complex with tRNA(Glu) and an enzyme inhibitor, Glu-AMS; tRNA 2cv2 D 75 2.69 RF00005 URS000052BB59_274 17161369 0030533 0006412 274 ggccccaucgucuagcgguuaggacgcggcccucucaaggccgaaacggggguucgauucccccuggggucacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>....<<<<<.......>>>>>>>>>>>>.... (((((((..((((....[...)))).(((((.......)))))....(((((..]....)))))))))))).... Glutamyl-tRNA synthetase from Thermus thermophilus in complex with tRNA(Glu) and an enzyme inhibitor, Glu-AMS; tRNA 2czj B 62 3.01 RF00023 URS000080DD57_300852 17488812 0006401 300852 gggggugaaacggucucgacagggguucgccuuuggacgugggnucgacucccaccaccucc <<<<<<<............<<<<<<....>>>>>>...<<<<<.......>>>>>>>>>>>> (((((((.....[......((((.(....).))))...(((((..]....)))))))))))) Crystal structure of the tRNA domain of tmRNA from Thermus thermophilus HB8; tmRNA (63-MER) 2czj D 62 3.01 RF00023 URS000080DD57_300852 17488812 0006401 300852 gggggugaaacggucucgacagggguucgccuuuggacgugggnucgacucccaccaccucc <<<<<<<............<<<<<<....>>>>>>...<<<<<.......>>>>>>>>>>>> (((((((.....[......((((((....))))))...(((((..]....)))))))))))) Crystal structure of the tRNA domain of tmRNA from Thermus thermophilus HB8; tmRNA (63-MER) 2czj F 62 3.01 RF00023 URS000080DD57_300852 17488812 0006401 300852 gggggugaaacggucucgacagggguucgccuuuggacgugggnucgacucccaccaccucc <<<<<<<............<<<<<<....>>>>>>...<<<<.........>>>>>>>>>>> (((((((............((((.(....).))))...(((((.......)))))))))))) Crystal structure of the tRNA domain of tmRNA from Thermus thermophilus HB8; tmRNA (63-MER) 2czj H 62 3.01 RF00023 URS000080DD57_300852 17488812 0006401 300852 gggggugaaacggucucgacagggguucgccuuuggacgugggnucgacucccaccaccucc <<<<<<<............<<<<<<....>>>>>>...<<<<<.......>>>>>>>>>>>> (((((((............((((((....))))))...(((((.......)))))))))))) Crystal structure of the tRNA domain of tmRNA from Thermus thermophilus HB8; tmRNA (63-MER) 2d1a A 39 NA RF00175 URS000080DE22_11676 16272570 0019074 11676 gggucggcuugcugaagugcacacggcaagaggcgaccc ....................................... ....................................... Solution RNA structure model of the HIV-1 dimerization initiation site in the extended-duplex dimer; RNA 2d1a B 39 NA RF00175 URS000080DE22_11676 16272570 0019074 11676 gggucggcuugcugaagugcacacggcaagaggcgaccc ....................................... ....................................... Solution RNA structure model of the HIV-1 dimerization initiation site in the extended-duplex dimer; RNA 2d1b A 39 NA RF00175 URS000080DE22_11676 16272570 0019074 11676 gggucggcuugcugaagugcacacggcaagaggcgaccc <<<<<<.<<<<<<<.........>>>>>>>...>>>>>> ((((((.(((((((.........)))))))...)))))) Solution RNA structure model of the HIV-1 dimerization initiation site in the kissing-loop dimer; RNA 2d1b B 39 NA RF00175 URS000080DE22_11676 16272570 0019074 11676 gggucggcuugcugaagugcacacggcaagaggcgaccc <<<<<<.<<<<<<...........>>>>>>...>>>>>> ((((((.(((((((.........)))))))...)))))) Solution RNA structure model of the HIV-1 dimerization initiation site in the kissing-loop dimer; RNA 2d6f E 72 3.15 RF00005 URS000080E128_145262 16809540 0030533 0006412 145262 agucccgugggguagugguaauccugcugggcuuuggacccggcgacagcgguucgacuccgcucgggacua <<<<<<<..<<<..........>>><<<<<<.......>>>>>>...<<<<<.......>>>>>>>>>>>>. (((((((...(......[.....).((((((.......))))))...(((((..]....)))))))))))). Crystal structure of Glu-tRNA(Gln) amidotransferase in the complex with tRNA(Gln); tRNA 2d6f F 74 3.15 RF00005 URS000080E128_145262 16809540 0030533 0006412 145262 agucccgugggguagugguaauccugcugggcuuuggacccggcgacagcgguucgacuccgcucgggacuacc <<<<<<<..<<<..........>>><<<<<<.......>>>>>>...<<<<<.......>>>>>>>>>>>>... (((((((..(((.....[....)))((((((.......))))))...(((((..]....))))))))))))... Crystal structure of Glu-tRNA(Gln) amidotransferase in the complex with tRNA(Gln); tRNA 2der C 74 3.1 RF00005 URS000037E2FF_562 16871210 0030533 0006412 562 guccccuucgucuagaggcccaggacaccgcccuuucacggcgguaacagggguucgaauccccuaggggacgc ....<<<..<<<<.........>>>><<<<<<.......>>>>>>...<<<<<.......>>>>>>>>...... ....(.(..((((....[....))))((((((.......))))))...(((((..]....)))))).)...... Cocrystal structure of an RNA sulfuration enzyme MnmA and tRNA-Glu in the initial tRNA binding state; tRNA 2der D 71 3.1 RF00005 URS000037E2FF_562 16871210 0030533 0006412 562 ccccuucgucuagaggcccaggacaccgcccuuucacggcgguaacagggguucgaauccccuaggggacg .<<<<..<<<<.........>>>><<<<<<.......>>>>>>...<<<<<.......>>>>>>>>>.... .((((..((((....[....))))((((((.......))))))...(((((..]....))))))))).... Cocrystal structure of an RNA sulfuration enzyme MnmA and tRNA-Glu in the initial tRNA binding state; tRNA 2det C 70 3.4 RF00005 URS000037E2FF_562 16871210 0030533 0006412 562 guccccuucgucuagaggcccaggacaccgcccuuucacggcgguaacagggguucgaauccccuagggg ..<<.<...<<<<.........>>>><<<<<<.......>>>>>>...<<<<<.......>>>>>.>>>. ..(((....((((....[....))))((((((.......))))))....((((..]....))))..))). Cocrystal structure of an RNA sulfuration enzyme MnmA and tRNA-Glu in the pre-reaction state; tRNA 2deu C 74 3.4 RF00005 URS000037E2FF_562 16871210 0030533 0006412 562 guccccuucgucuagaggcccaggacaccgcccuuucacggcgguaacagggguucgaauccccuaggggacgc ...<.....<<<<.........>>>><<<<<<.......>>>>>>...<<<<<.......>>>>>..>...... ...(.....((((....[....))))((((((.......))))))....((((..]....))))...)...... Cocrystal structure of an RNA sulfuration enzyme MnmA and tRNA-Glu in the adenylated intermediate state; tRNA 2deu D 74 3.4 RF00005 URS000037E2FF_562 16871210 0030533 0006412 562 guccccuucgucuagaggcccaggacaccgcccuuucacggcgguaacagggguucgaauccccuaggggacgc ...<.....<<<<.........>>>><<<<<<.......>>>>>>...<<<<<.......>>>>>..>...... ...(.....((((....[....))))((((((.......))))))....((((..]....))))...)...... Cocrystal structure of an RNA sulfuration enzyme MnmA and tRNA-Glu in the adenylated intermediate state; tRNA 2dlc Y 74 2.4 RF00005 URS000080E110_4932 17576676 0030533 0006412 4932 cucucgguanccaagunggaaggcncaagauguanaucuugaggungggcgnucgncucgcccccgggagacca <<<<<<<..<<<.........>>>.<<<.<......>.>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..(((.....[...))).(..(........)..).....(((((..]....)))))))))))).... Crystal structure of the ternary complex of yeast tyrosyl-tRNA synthetase; T-RNA (76-MER) 2dr2 B 75 3.0 RF00005 URS00002CF5C7_9913 16798914 0030533 0006412 9913 gaccucguggcgcaaugguagcgcgucugacuccagaucagaagguugcguguucgaaucacgucggggucacca <<<<<<<..<<<<.......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((....((.......))...(((((.......))))).....(((((.......)))))))))))).... Structure of human tryptophanyl-tRNA synthetase in complex with tRNA(Trp); transfer RNA-Trp 2du3 D 71 2.6 RF00005 URS000080E059_2234 17351629 0030533 0006412 2234 gccaggguggcagaggggcuuugcggcggacugcagauccgcuuuaccccgguucgaauccgggcccuggc <<<<<<<..<<<<.......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>> (((((((..(((.....[...)))..((((.......))))......(((((..]....)))))))))))) Crystal structure of Archaeoglobus fulgidus O-phosphoseryl-tRNA synthetase complexed with tRNACys and O-phosphoserine; tRNA 2du4 C 71 2.8 RF00005 URS000080E059_2234 17351629 0030533 0006412 2234 gccaggguggcagaggggcuuugcggcggacugcagauccgcuuuaccccgguucgaauccgggcccuggc <<<<<<<..<<<.........>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>> (.(((((..(((.....[...)))..((((.......))))......(((((..]....)))))))))).) Crystal structure of Archaeoglobus fulgidus O-phosphoseryl-tRNA synthetase complexed with tRNACys; tRNA 2du5 D 71 3.2 RF00005 URS000080E26B_2234 17351629 0030533 0006412 2234 gccaggguggcagaggggcuuugcggcggacuucagauccgcuuuaccccgguucgaauccgggcccuggc .<<<<<<..<<<<.......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>. (((((((..(((.....[...))).(((((.......))))).....(((((..]....)))))))))))) Crystal structure of Archaeoglobus fulgidus O-phosphoseryl-tRNA synthetase E418N/E420N mutant complexed with tRNAOpal and O-phosphoserine (""opal complex""); tRNA 2du6 D 71 3.3 RF00005 URS000080E16C_2234 17351629 0030533 0006412 2234 gccaggguggcagaggggcuuugcggcggacucuagauccgcuuuaccccgguucgaauccgggcccuggc .<<<<<<..<<<<.......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>. (((((((..(((.....[...))).(((((.......))))).....(((((..]....)))))))))))) Crystal structure of Archaeoglobus fulgidus O-phosphoseryl-tRNA synthetase E418N/E420N mutant complexed with tRNAAmber and O-phosphoserine (""amber complex""); tRNA 2dxi C 75 2.2 RF00005 URS000052BB59_274 17161369 0030533 0006412 274 ggccccaucgucuagcgguuaggacgcggcccucucaaggccgaaacggggguucgauucccccuggggucacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>....<<<<<.......>>>>>>>>>>>>.... (((((((..((((....[...)))).(((((.......)))))....(((((..]....)))))))))))).... 2.2 A crystal structure of glutamyl-tRNA synthetase from Thermus thermophilus complexed with tRNA(Glu), ATP, and L-glutamol; tRNA 2dxi D 75 2.2 RF00005 URS000052BB59_274 17161369 0030533 0006412 274 ggccccaucgucuagcgguuaggacgcggcccucucaaggccgaaacggggguucgauucccccuggggucacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>....<<<<<.......>>>>>>>>>>>>.... (((((((..((((....[...)))).(((((.......)))))....(((((..]....)))))))))))).... 2.2 A crystal structure of glutamyl-tRNA synthetase from Thermus thermophilus complexed with tRNA(Glu), ATP, and L-glutamol; tRNA 2ees A 67 1.75 RF00167 URS000080DE3D_1423 17960911 0009113 1423 ggacauuuaaucgcguggauauggcacgcaaguuucuaccgggcaccguaaauguccgacaaugucc <<<<<<<...<.<<<<<.....<<>>>>>.>........<<<<<<>>.....>>>>>>..>>>>>>> .(((((((..(.(((((.....[[))))).)[.....)]((((((]].....))))))..)))))). Guanine riboswitch A21U, U75A mutant bound to hypoxanthine; Guanine riboswitch 2eet A 67 1.95 RF00167 URS000080DDBB_1423 17960911 0009113 1423 ggacauguaaucgcguggauauggcacgcaaguuucuaccgggcaccguaaauguccgaccaugucc <<<<<<<...<.<<<<<.....<<>>>>>.>........<<<<<<>>.....>>>>>>..>>>>>>> .(((((((..(.(((((.....[[))))).)[.....)]((((((]].....))))))..)))))). Guanine Riboswitch A21G, U75C mutant bound to hypoxanthine; Guanine Riboswitch 2eeu A 67 1.95 RF00167 URS000080E2FB_1423 17960911 0009113 1423 ggacauaaaaucgcguggauauggcacgcaaguuucuuccgggcaccguaaauguccgacuaugucc <<<<<<<...<.<<<<<.....<<>>>>>.>........<<<<<<>>.....>>>>>>..>>>>>>> ((((((((..(.(((((.....[[))))).)[.....)]((((((]].....))))))..))))))) Guanine riboswitch U22A, A52U mutant bound to hypoxanthine; Guanine riboswitch 2eev A 67 1.95 RF00167 URS000080DFC6_1423 17960911 0009113 1423 ggacauacaaucgcguggauauggcacgcaaguuucugccgggcaccguaaauguccgacuaugucc <<<<<<<...<.<<<<<.....<<>>>>>.>........<<<<<<>>.....>>>>>>..>>>>>>> ((((((((..(.(((((.....[[))))).)[.....)]((((((]].....))))))..))))))) Guanine riboswitch U22C, A52G mutant bound to hypoxanthine; guanine riboswitch 2eew A 67 2.25 RF00167 URS000080E008_1423 17960911 0009113 1423 ggacauauaaucgcguggauauggcacgcaagcuucuaccgggcaccguaaauguccgacuaugucc <<<<<<<...<.<<<<<.....<<>>>>>.>........<<<<<<>>.....>>>>>>..>>>>>>> ((((((((..(.(((((.....[[))))).)[.....)]((((((]].....))))))..))))))) Guanine Riboswitch U47C mutant bound to hypoxanthine; Guanine riboswitch 2f88 A 34 NA RF00029 URS000080E292_32630 16428604 0000373 32630 gagccgugugcgaugaaagucgcaagcacgguuc <<<<<<<<<<<<<<....>>>>>..>>>>>>>>> ((((((((.(((((....)))))...)))))))) Solution NMR structure of domain 5 from the Pyaiella littoralis (PL) group II intron; D5-PL RNA RIBOZYME DOMAIN 2fdt A 36 NA RF00436 URS000080DE48_32630 17000640 0032197 32630 gguuguacgucgcuuuggauaaaagcgucugcgacc <<<<<<..<.<<<<<<.....>>>>>>.>.>>>>>> (((((((.(.(((((.......))))).)))))))) Solution structure of a conserved RNA hairpin of eel LINE UnaL2; 36-mer 2fk6 R 53 2.9 RF00005 URS000080DE34_1423 16518398 0030533 0006412 1423 gcuuccauagcucagcagguagagcgucagcgguucgagcccgcuuggaagcu <<<<<<<..<<<<........>>>>...<<<<<.......>>>>>>>>>>>>. (((((((..((((.....[..))))...(((((..]....)))))))))))). Crystal Structure of RNAse Z/tRNA(Thr) complex; TRNA(THR) 2fmt C 77 2.8 RF00005 URS00001BBAFC_32630 9843487 0030533 0006412 32630 cgcggggnggagcagccuggnagcucgucgggnucauaacccgaagaucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... METHIONYL-TRNAFMET FORMYLTRANSFERASE COMPLEXED WITH FORMYL-METHIONYL-TRNAFMET; FORMYL-METHIONYL-TRNAFMET2 2fmt D 77 2.8 RF00005 URS00001BBAFC_32630 9843487 0030533 0006412 32630 cgcggggnggagcagccuggnagcucgucgggnucauaacccgaagaucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... METHIONYL-TRNAFMET FORMYLTRANSFERASE COMPLEXED WITH FORMYL-METHIONYL-TRNAFMET; FORMYL-METHIONYL-TRNAFMET2 2g9c A 67 1.7 RF00167 URS000080DFC3_1423 17076468 0009113 1423 ggacauauaaucgcguggauauggcacgcaaguuucuaccgggcaccguaaauguccgauuaugucc <<<<<<<...<.<<<<<.....<<>>>>>.>........<<<<<<>>.....>>>>>>..>>>>>>> ((((((((..(.(((((.....[[))))).)[.....)]((((((]].....))))))..))))))) Modified pyrimidines Specifically bind the purine riboswitch; guanine riboswitch 2gcs B 123 2.1 RF00234 URS000080DF18_119072 16990543 0003824 0010468 119072 ggcuuuaaguugacgagggcaggguuuaucgagacaucggcgggugcccugcggucuuccugcgaccguuagaggacugguaaaaccacaggcgacuguggcauagagcaguccgggcaggan .............(((...<<<<<<...)))..............>>>>>>(((((.<<<<<<))))).....<<<<<<......<<<<<<....>>>>>>.......>>>>>>..>>>>>>. .............[[[...((((((...]]]..............))))))[[[[[.((((((]]]]].....((((((......((((((....)))))).......))))))..)))))). Pre-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme; glmS ribozyme RNA 2gcv B 123 2.1 RF00234 URS000080DF18_119072 16990543 0003824 0010468 119072 ggcuuuaaguugacgagggcaggguuuaucgagacaucggcgggugcccugcggucuuccugcgaccguuagaggacugguaaaaccacaggcgacuguggcauagagcaguccgggcaggan .............(((...<<<<<<...)))..............>>>>>>(((((.<<<<<<))))).....<<<<<<......<<<<<<....>>>>>>.......>>>>>>..>>>>>>. .............[[[...((((((...]]]..............))))))[[[[[.((((((]]]]].....((((((......((((((....)))))).......))))))..)))))). Post-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme; glmS ribozyme RNA 2gis A 94 2.9 RF00162 URS000080DF35_119072 16810258 0010468 119072 ggcuuaucaagagagguggagggacuggcccgaugaaacccggcaaccagaaauggugccaauuccugcagcggaaacguugaaagaugagcca <<<<<<<<......<<<...<<<...((>>>......>>>.<<<<.<<<....>>>>>>>....))..<<<<<....>>>>>...>>>>>>>>. ((((((((....(.(((...(((.[.[[)))......))))(((..(((....))).)))...(]].](((((....)))))..))))))))). Structure of the S-adenosylmethionine riboswitch mRNA regulatory element; SAM-I riboswitch 2gm0 A 35 NA RF00175 URS000080DE12_11676 16603544 0019074 11676 gacggcuugcugaagcgcgcacggcaagaggcguc ................................... ................................... Linear dimer of stemloop SL1 from HIV-1; RNA (35-MER) 2gm0 B 35 NA RF00175 URS000080DE12_11676 16603544 0019074 11676 gacggcuugcugaagcgcgcacggcaagaggcguc ................................... ................................... Linear dimer of stemloop SL1 from HIV-1; RNA (35-MER) 2go5 A 127 7.4 RF00017,RF01856 URS000080DFD3_9616 16675701 0006617 0005786 9616 gacacuaaguucggcaucaauauggugaccucccgggagcgggggaccaccagguugccuaaggaggggugaaccggcccaggucggaaacggagcaggucaaaacucccgugcugaucaguagugu .<<<<<<.<.<<..<<<<<<<.<<<<<..<<<<<<....>>>>>>..>>>>>.>>>>........<<<<<.....<<<<..<.<<<....>>>..>.>>>>...>>>>>.>>>..>>.>..>>>>>> .(((((..(.(((..((((((.(((((..((((((....))))))..))))).))))......(.(((((.....((((....(((....)))....))))...))))))))..))).)...))))) Structure of signal recognition particle receptor (SR) in complex with signal recognition particle (SRP) and ribosome nascent chain complex; SRP RNA 2h0s B 123 2.35 RF00234 URS000080DF18_119072 16990543 0003824 0010468 119072 ggcuuuaaguugacgagggcaggguuuaucgagacaucggcgggugcccugcggucuuccugcgaccguuagaggacugguaaaaccacaggcgacuguggcauagagcaguccgggcaggan .............(((...<<<<<<...)))..............>>>>>>(((((.<<<<<<))))).....<<<<<<......<<<<<<....>>>>>>.......>>>>>>..>>>>>>. .............[[[...((((((...]]]..............))))))[[[[[.((((((]]]]].....((((((......((((((....)))))).......))))))..)))))). Pre-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme; glmS ribozyme RNA 2h0w B 123 2.4 RF00234 URS000080DF18_119072 16990543 0003824 0010468 119072 ggcuuuaaguugacgagggcaggguuuaucgagacaucggcgggugcccugcggucuuccugcgaccguuagaggacugguaaaaccacaggcgacuguggcauagagcaguccgggcaggan .............(((...<<<<<<...)))..............>>>>>>(((((.<<<<<<))))).....<<<<<<......<<<<<<....>>>>>>.......>>>>>>..>>>>>>. .............[[[...((((((...]]]..............))))))[[[[[.((((((]]]]].....((((((......((((((....)))))).......))))))..)))))). Post-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme; glmS ribozyme RNA 2h0x B 123 2.3 RF00234 URS000080DF18_119072 16990543 0003824 0010468 119072 ggcuuuaaguugacgagggcaggguuuaucgagacaucggcgggugcccugcggucuuccugcgaccguuagaggacugguaaaaccacaggcgacuguggcauagagcaguccgggcaggan .............(((...<<<<<<...)))..............>>>>>>(((((.<<<<<<))))).....<<<<<<......<<<<<<....>>>>>>.......>>>>>>..>>>>>>. .............[[[...((((((...]]]..............))))))[[[[[.((((((]]]]].....((((((......((((((....)))))).......))))))..)))))). Pre-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme; glmS ribozyme RNA 2h0z B 123 2.7 RF00234 URS000080DF18_119072 16990543 0003824 0010468 119072 ggcuuuaaguugacgagggcaggguuuaucgagacaucggcgggugcccugcggucuuccugcgaccguuagaggacugguaaaaccacaggcgacuguggcauagagcaguccgggcaggaa .............(((...<<<<<<...)))..............>>>>>>(((((.<<<<<<))))).....<<<<<<......<<<<<<....>>>>>>.......>>>>>>..>>>>>>. .............[[[...((((((...]]]..............))))))[[[[[.((((((]]]]].....((((((......((((((....)))))).......))))))..)))))). Pre-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme bound to glucose-6-phosphate; glmS ribozyme RNA 2ho6 B 123 2.8 RF00234 URS000080DF18_119072 16990543 0003824 0010468 119072 ggcuuuaaguugacgagggcaggguuuaucgagacaucggcgggugcccugcggucuuccugcgaccguuagaggacugguaaaaccacaggcgacuguggcauagagcaguccgggcaggan .............(((...<<<<<<...)))..............>>>>>>(((((.<<<<<<))))).....<<<<<<......<<<<<<....>>>>>>.......>>>>>>..>>>>>>. .............[[[...((((((...]]]..............))))))[[[[[.((((((]]]]].....((((((......((((((....)))))).......))))))..)))))). Post-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme; glmS ribozyme RNA 2ho7 B 123 2.9 RF00234 URS000080DF18_119072 16990543 0003824 0010468 119072 ggcuuuaaguugacgagggcaggguuuaucgagacaucggcgggugcccugcggucuuccugcgaccguuagaggacugguaaaaccacaggcgacuguggcauagagcaguccgggcaggan .............(((...<<<<<<...)))..............>>>>>>(((((.<<<<<<))))).....<<<<<<......<<<<<<....>>>>>>.......>>>>>>..>>>>>>. .............[[[...((((((...]]]..............))))))[[[[[.((((((]]]]].....((((((......((((((....)))))).......))))))..)))))). Pre-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme bound to glucose-6-phosphate; glmS ribozyme RNA 2iy3 B 110 16.0 RF00169 URS000080DE7C_562 17086205 0006617 0048501 562 gggggcucuguugguucucccgcaacgcuacucuguuuaccaggucagguccgaaaggaagcagccaaggcagaugacgcgugugccgggauguagcuggcagggccccc <<<<<<<<<<<<<<<<.<<<<<..<<<<...<<<<<<.....<<<....<<<....>>>....>>>..>>>>>>....>>>>....>>>>>...>>>>>>>>>>>>>>>> ((((((.(((...(....(((....(((.....((.......((.....((......)).....))....))......)))......)))......)...))).)))))) Structure of the E. Coli Signal Regognition Particle; 4.5S RNA 2iy5 T 76 3.1 RF00005 URS000080E078_300852 16939209 0030533 0006412 300852 gccgagguagcucaguugguagagcaugcgacugaaaaucgcaguguccgcgguucgauuccgcgccucggcacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).(((((.......))))).....(((((..]....)))))))))))).... PHENYLALANYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS complexed with tRNA and a phenylalanyl-adenylate analog; TRNAPHE 2j28 8 74 9.5 RF00169 URS000080E293_562 17086193 0006617 0048501 562 ucugugcucugugcucuguuuaccaggucagguccgaaaggaagcagccaaggcagagacgcagagcaggcaga <<<<<<<<<<<<<<<<<<<<<....<<<..<.<<<....>>>..>.>>>.>>>>>>>>.>>>>>>>>..>>>>> (((((((((((((((((((((....(((....(((....)))....))).)))))))).))))))))..))))) MODEL OF E. COLI SRP BOUND TO 70S RNCS; 4.5S SIGNAL RECOGNITION PARTICLE RNA 2j37 A 128 8.7 RF00017,RF01856 URS000080DE1E_9616 17086193 0006617 0005786 9616 gacacuaaguucggcaucaauauggugaccucccgggagcgggggaccaccagguugccuaaggaggggugaaccggcccaggucggaaacggagcaggucaaaacucccgugcugaucaguaguguc <<<<<<<.<.<<<<<<<<<<<.<<<<<..<<<<<<....>>>>>>..>>>>>.>>>>........<<<<<.....<<<<..<.<<<....>>>..>.>>>>...>>>>>.>>>>>>>.>..>>>>>>> ((((((..(.(((((((((((.(((((..((((((....))))))..))))).))))......(.(((((.....((((....(((....)))....))))...))))))))))))).)...)))))) MODEL OF MAMMALIAN SRP BOUND TO 80S RNCS; SRP RNA 2jtp A 34 NA RF01835 URS000080E15C_32630 17868691 0075523 32630 ggauggggaaagaagccccgcaauuuccccaucc <<<<<<<<<<<...<<...>>..>>>>>>>>>>> (((((((((((...((...))..))))))))))) Solution Structure of the Frameshift-Inducing RNA Stem-Loop in SIV; SIV17-50 RNA (34-MER) 2k4c A 76 NA RF00005 URS000009F4BF_562 18787959 0030533 0006412 562 gggugauuagcucagcugggagagcaccucccuuacaaggagggggucggcgguucgaucccgucaucacccacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).(((((.......))))).....(((((..]....)))))))))))).... tRNAPhe-based homology model for tRNAVal refined against base N-H RDCs in two media and SAXS data; 76-MER 2ke6 A 48 NA RF00207 URS000080DEE0_7227 20473315 0008298,0051028 7227 ggcuugauuguauuuuuaaauuaauucuuaaaaacuacaaauuaagcc <<<<<<<<<<<<<<<<<<<........>>>>>>>.>>>>.>>>>>>>> (((((.(((((((((((((........))))))).))).))).))))) Solution Structure of K10 TLS RNA; K10 TLS RNA 2krl A 102 NA RF00500 URS000080E1F0_11988 20080629 1902679 11988 ggacgguggcagcacugucuagcugcgggcauuagacuggaaaacuagugcucuuuggguaaccacuaaaaucccgaaagggugggcuguggugacccuccg .<<<<<<<....>>>>>>>........<<<<<<<<....(....>>>>>>>>......<<.<<<<<......<........>......>>>>>.>>...).. .(((((((....))))))).......(((((((((..[[[[...)))))))))...((((.(((((......(........)......))))).))))]]]] The ensemble of the solution global structures of the 102-nt ribosome binding structure element of the turnip crinkle virus 3' UTR RNA; RNA (102-MER) 2kur A 48 NA RF00207 URS000080E344_7227 20473315 0008298,0051028 7227 ggcuugauuguauuauuaaauuaauucuuaauaacuacaaauuaagcc <<<<<<<<<<<<<<<<<<<........>>>>>>>.>>>>.>>>>>>>> (((((((((((((((((((........))))))).))).))))))))) Solution Structure of K10 TLS RNA (AU mutant in upper helix); K10 TLS RNA 2kuu A 48 NA RF00207 URS000080E155_7227 20473315 0008298,0051028 7227 ggcuugauuguauguguaaauuaauucuuacacacuacaaauuaagcc <<<<<<<<<<<<<<<<<<<........>>>>>>>.>>>.>>>>>>>>> (((((((((((((((((((........))))))).))).))))))))) Solution Structure of K10 TLS RNA (GC mutant in upper helix); K10 TLS RNA 2kuv A 48 NA RF00207 URS000080DE75_7227 20473315 0008298,0051028 7227 ggcucgauuguauuuuuaaauuaauucuuaaaaacuacaaaucgagcc <<<<<<<<<<<<<<<<<<<........>>>>>>>.>>>.>>>>>>>>> (((((((((((((((((((........))))))).))).))))))))) Solution Structure of K10 TLS RNA (GC mutant in lower helix); K10 TLS RNA 2kuw A 48 NA RF00207 URS000080E2A2_7227 20473315 0008298,0051028 7227 gggguugguguauuuuuaaauuaauucuuaaaaacuacaaucagcucc <<<<<<<<<<<<<<<<<<<........>>>>>>>.>>>>.>>>>>>>> (((((((((((.(((((((........)))))))..)).))))))))) Solution Structure of K10 TLS RNA (A-form mutant in lower helix); K10 TLS RNA 2l1f A 65 NA RF00374 URS000080DD56_11801 20933521 0019072 11801 ggcggacccgugguggaacagacguguucggaacacccggccgcaacccugggagacgucccagg ..<<<..<<<.<<<<<<<<......>>>>....>>>>>>>>>>....<<<<<<<....>>>>>>> .((((..(((.(((((((((....)))))....)))))))))))...(((((((....))))))) Structure of a conserved retroviral RNA packaging element by NMR spectroscopy and cryo-electron tomography; RNA (65-MER) 2l1f B 66 NA RF00374 URS000080DE60_11801 20933521 0019072 11801 ggcggacccgugguggaacagacguguucggaacacccggccgcaacccugggagacgucccaggg ..<<<..<<<.<<<<<<<<......>>>>....>>>>>>>>>>...<<<<<<<......>>>>>>> .((((..(((.(((((((((....)))))....)))))))))))..((((((((....)))))))) Structure of a conserved retroviral RNA packaging element by NMR spectroscopy and cryo-electron tomography; RNA (66-MER) 2l3j B 71 NA RF02095 URS000080DF7D_10116 20946981 0035195 0016442 10116 ggcauuaagguggguggaauaguauaacaauaugcuaaauguuguuauaguaucccaccuacccugaugcc <<<<<<<.<<<<<<<<<.<<<.<<<<<<<<<<<.....>>>>>>>>>>>.>>>.>>>>>>>>>.>>>>>>> (((((((.(((((((((.(((.(((((((((((.....))))))))))).))).))))))))).))))))) The solution structure of the ADAR2 dsRBM-RNA complex reveals a sequence-specific read out of the minor groove; RNA (71-MER) 2l94 A 45 NA RF00480 URS000080E22A_11676 21648432 0075523 11676 gggaagaucuggccuucccacaagggaaggccagggaaucuuccc <<<<<<<<<<<<<<<<<<<....>>>>>>>>>>>...>>>>>>>> (((((((((((((((((((....)))))))))))...)))))))) Structure of the HIV-1 frameshift site RNA bound to a small molecule inhibitor of viral replication; RNA_(45-MER) 2lc8 A 56 NA RF01073 URS0000A7636D_11801 22121021 0039705 11801 ggucagggucaggagccccccccugaacccaggauaacccucaaagucggggggca .[[[.((((((((.<<<<<<<)))).))))..]]].............>>>>>>>. .(((.((((((((.[[[[[[[)))).))))..))).............]]]]]]]. Solution structure of the MLV readthrough pseudoknot; RNA (56-MER) 2lkr A 111 NA RF00026,RF00004 URS000080E147_4932 22328579 0030621,0045131 0000244,0000353,0000348 0005688,0046540,0005686 4932 ggcaauacagagaugaucagcaguuccccugcauaaggaugaaccguuuuacaaagagauuucuucgggaaucucuuugccuuuuggcuuagaucaaguguaguaucuguc .<<.<<<<.....<<<<<<<<.<<<<.<<<.....>>>..>>>>.......<<<<<<<<<<<.<..>.>>>>>>>>>>>.......>>>..>>>>>......>>>>..>>. ((((((((.....((((((((.((((.(((.....)))..)))).......((((((((((((....)))))))))))).......)))..)))))......)))).)))) Yeast U2/U6 complex; RNA (111-MER) 2lps A 34 NA RF00029 URS000080DF0B_4932 22714631,14745440 0000373 4932 gagccguaugcgaugaaagucgcacguacgguuc <<<<<<<<<<<<<<....>>>>>>..>>>>>>>> ((((((((((((((....))))))..)))))))) Molecular dynamics re-refinement of domain 5 of the yeast ai5(gamma) group II intron; RNA (34-MER) 2lpt A 34 NA RF00029 URS000080E292_32630 22714631,16428604 0000373 32630 gagccgugugcgaugaaagucgcaagcacgguuc <<<<<<<<<<<<<<....>>>>>..>>>>>>>>> ((((((((((((((....))))).).)))))))) Molecular dynamics re-refinement of domain 5 of the Pylaiella littoralis group II intron; RNA_(34-MER) 2mf0 G 72 NA RF00166 URS000080DEDE_294 24828038 0006109,0006401 294 ugucgacggauagacacagccaucaaggacgauggucaggacaucgcaggaagcgauucaucaggacgauga <<<<........>>>>..<<<<<<......>>>>>>.......<<<<.....>>>>..<<<<.....>>>>. ((((........))))..((((((......)))))).......((((.....))))..((((.....)))). Structural basis of the non-coding RNA RsmZ acting as protein sponge: Conformer L of RsmZ(1-72)/RsmE(dimer) 1to3 complex; RNA_(72-MER) 2mf1 G 72 NA RF00166 URS000080DEDE_294 24828038 0006109,0006401 294 ugucgacggauagacacagccaucaaggacgauggucaggacaucgcaggaagcgauucaucaggacgauga <<<<........>>>>..<<<<<<......>>>>>>.......<<<<.....>>>>.<<<<<.....>>>>> ((((........))))..((((((......)))))).......((((.....)))).(((((.....))))) Structural basis of the non-coding RNA RsmZ acting as protein sponge: Conformer R of RsmZ(1-72)/RsmE(dimer) 1to3 complex; RNA_(72-MER) 2miy A 59 NA RF01054 URS000080E2D6_1313 24469808 0008616 1313 gcuuggugcuuagcuucuuucaccaagcauauuacacgcggauaaccgccaaaggagaa <<<<<<<<.....((((((.>>>>>>>>.........<<<<....>>>>..)))))).. ((((((((.....[[[[[[.)))))))).........((((....))))..]]]]]].. Solution NMR structure of a preQ1 Class II riboswitch from Streptococcus pneumoniae; RNA_(59-MER) 2n1q A 155 NA RF01381,RF00175,RF01380 URS000086851D_11676 25999508 0019074,0043484 11676 ggugcccgucuguugugugacucuggugagagccagaggagaucucucgacgcaggacucggcuugcuggagacggcaagaggcgaggggcggcgacuggugaguacgccaaaaauuuugacuagcggaggcuagaaggagagagaugggugccc <<<<<<<<<<<..<<<<<<.<<<<<<<....>>>>>>>...<<<..<<<.<<<....<<<<.<<<<<<<....>>>>>>>...>>>>..>>>.>>>..>>>...>>>>>.>.....<<<..<<<<<....>>>>>..>>>...>>>>>>>>>>>. (((((((((((.(((((((.(((((((....)))))))...(((..(((.(((....((((.(((((((....)))))))...))))..))).)))..)))...))))).).....(((..(((((....)))))..))).).))))))))))). HIV-1 Core Packaging Signal; RNA_(155-MER) 2n7m X 92 NA RF00015 URS00008FED30_4932 26655855 0017070 0000244,0000353 0005687,0046540 4932 ggccuuaugcacgggaaauacgcauaucagugaggauucguccgagauuguguuuuugcugguguaaaucagcaguuccccugcauaaggcu <<<<<<<<<<<.<<<<<..<<<<<..........<......>......>>>>>...<<<<<<......>>>>>>.>>>>>.>>>>>>>>>>> (((((((((((.(((((..(((((.(((.....(((....)))..))))))))...(((((((....))))))).))))).))))))))))) NMR-SAXS/WAXS Structure of the core of the U4/U6 di-snRNA; RNA (92-MER) 2nqp F 71 3.5 RF00005 URS00004EADCF_562 17466622 0030533 0006412 562 ccggaugguggaaucgguagacacaagggauaaucccucggcgugcugugcggguucaagucccgcuccgg <<<<<..<<<...........>>>.<<<<<<>.>>>>>.<<<..>>>..<<<<<.......>>>>>>>>>> .((((..(((...........))).(((((...)))))..((..))...(((((.......))))))))). Crystal structure of pseudoudirinde synthase TruA in complex with leucyl tRNA; transfer RNA 2nr0 E 81 3.9 RF00005 URS00004630EA_562 17466622 0030533 0006412 562 ccgaggugguggaauugguagacacgcuaccuugaggugguagugcccaauagggcuuacggguucaagucccguccucgg <<<<<<..<<<...........>>><<<<<<.......>>>>>><<<......>>>..<<<<<.......>>>>>>>>>>> ((((((..(((......[....)))((((((.......))))))((((....))))..(((((..]....))))))))))) Crystal structure of pseudoudirinde synthase TruA in complex with leucyl tRNA; leucyl tRNA 2nr0 F 72 3.9 RF00005 URS00004630EA_562 17466622 0030533 0006412 562 cgaggugguggaauugguagacacgcuaccuugaggugguagugccccuuacggguucaagucccguccucg ..<<<..<<<...........>>><<<<<<.......>>>>>><...>..<<<<<.......>>>>>>>>.. .((((..(((......[....)))((((((.......))))))(...)..(((((..]....))))))))). Crystal structure of pseudoudirinde synthase TruA in complex with leucyl tRNA; leucyl tRNA 2nr0 G 67 3.9 RF00005 URS00004630EA_562 17466622 0030533 0006412 562 aggugguggaauugguagacacgcuaccuugaggugguagugcgcuuacggguucaagucccguccu .<<..<<<...........>>><<<<<<.......>>>>>><..>..<<<<<.......>>>>>>>. (((..(((......[....)))((((((.......))))))(())..(((((..]....)))))))) Crystal structure of pseudoudirinde synthase TruA in complex with leucyl tRNA; leucyl tRNA 2nr0 H 65 3.9 RF00005 URS00004630EA_562 17466622 0030533 0006412 562 gaggugguggaauugguagacacgcuaccugguagugccggcuuacggguucaagucccguccuc <<<<..<<<...........>>><<<<<...>>>>><<..>>..<<<<<.......>>>>>>>>> ((((..(((......[..[.))).(((((.))))).((()))].(((((..]....))))))))) Crystal structure of pseudoudirinde synthase TruA in complex with leucyl tRNA; leucyl tRNA 2nre F 56 4.0 RF00005 URS00004630EA_562 17466622 0030533 0006412 562 aggugguggaauugguagacacgcuaccgguaguuacggguucaagucccguccuc <<...<<<...........>>><<<<<..>>>>>.<<<<<.......>>>>>.>>. .((..(((...........)))(((((..))))).(((((.......))))))).. Crystal structure of pseudoudirinde synthase TruA in complex with leucyl tRNA; leucyl tRNA 2nz4 P 141 2.498 RF00234 URS000080E011_1392 17196404 0003824 0010468 1392 ngcaccauugcacuccggugccaguugacgaggugggguuuaucgagauuucggcggaugacucccgguuguucaucacaaccgcaagcuuuuacuuaaaucauuaaggugacuuaguggacaaaggugaaagugugauga <<<<<<..........>>>>>>......(((...<<<<<<..)))..............>>>>>><<<<<<.(((((.>>>>>>...<<<<<<<<<....<<<<<<<<....>>>>>>>.>....>>>>>>>>>..))))) ((((((..........))))))......[[[...((((((..]]]..............))))))((((((.[[[[[[))))))...(((.(((((.....(((((((....)))))))......))))).))).]]]]]] Structural investigation of the GlmS ribozyme bound to its catalytic cofactor; GlmS ribozyme 2nz4 Q 141 2.498 RF00234 URS000080E011_1392 17196404 0003824 0010468 1392 ngcaccauugcacuccggugccaguugacgaggugggguuuaucgagauuucggcggaugacucccgguuguucaucacaaccgcaagcuuuuacuuaaaucauuaaggugacuuaguggacaaaggugaaagugugauga <<<<<<..........>>>>>>......(((...<<<<<<..)))..............>>>>>><<<<<<.((((((>>>>>>...<<<<<<<<<....<<<<<<<<....>>>>>>>.>....>>>>>>>>>.)))))) ((((((..........))))))......[[[...((((((..]]]..............))))))((((((.[[[[[[))))))...(((((((((.....(((((((....)))))))......))))))))).]]]]]] Structural investigation of the GlmS ribozyme bound to its catalytic cofactor; GlmS ribozyme 2nz4 R 141 2.498 RF00234 URS000080E011_1392 17196404 0003824 0010468 1392 ngcaccauugcacuccggugccaguugacgaggugggguuuaucgagauuucggcggaugacucccgguuguucaucacaaccgcaagcuuuuacuuaaaucauuaaggugacuuaguggacaaaggugaaagugugauga <<<<<<..........>>>>>>......(((...<<<<<<..)))..............>>>>>><<<<<<.((((((>>>>>>...<<<<<<<<<....<<<<<<<<....>>>>>>>.>....>>>>>>>>>.)))))) ((((((..........))))))......[[[...((((((..]]]..............))))))((((((.[[[[[[))))))...(((((((((.....(((((((....)))))))......))))))))).]]]]]] Structural investigation of the GlmS ribozyme bound to its catalytic cofactor; GlmS ribozyme 2nz4 S 141 2.498 RF00234 URS000080E011_1392 17196404 0003824 0010468 1392 ngcaccauugcacuccggugccaguugacgaggugggguuuaucgagauuucggcggaugacucccgguuguucaucacaaccgcaagcuuuuacuuaaaucauuaaggugacuuaguggacaaaggugaaagugugauga <<<<<<..........>>>>>>......(((...<<<<<<..)))..............>>>>>><<<<<<.((((((>>>>>>...<<<<<<<<<....<<<<<<<<....>>>>>>>.>....>>>>>>>>>.)))))) ((((((..........))))))......[[[...((((((..]]]..............))))))((((((.[[[[[[))))))...(((((((((.....(((((((....)))))))......))))))))).]]]]]] Structural investigation of the GlmS ribozyme bound to its catalytic cofactor; GlmS ribozyme 2ob7 A 328 13.6 RF00023 URS000080DFA2_274 17179154 0006401 274 ggcgcguauucgacggggacccaaggugcaugccgaggggcgguuggccucguaaaaagccgcaacggcauaacugccaacaccaacuacgcucuggcagcuuaauaaccugcuuaccucucucccuagccuccgcucuuaggacggggaucaagagaggucaaacccaaaagagaucgcguggaagcccugccugggguugaagcguuaaaacuuaaucaggcuguuuguuaguggcguguccguccgcagcuggcaagcgaauguaaagacugacuaagcaugaccgaggaccucggacgcggguucgauucccgcacgcgccucc <<<<<<<......<<<<...<<...<..<<<<.<<<<..((((.....>>>>.......))))......................(.........<<<.[..........)>>.].<<<<<<.<<<<..<<<....((..>>>..>>>>.....>>>>>>>.........<.))....<<<<...<<<<<.((((.>>>>>...>>>>>........<>.))))..<<<<<.<<<.<<<.(((.(..>>>.>>>(>>>>>......).....).)))....>>>>.>...>>..>>>>...<<<<<.......>>>>>>>>>>>>... ((((((.......((.....(........((.........(((................)))..................................((.............))..........(((....................)))..............................................................................((..............[.............))...............].......)).......)....))...((((.........)))).))))))... Structure of tmRNA-(SmpB)2 complex as inferred from cryo-EM; transfer-messenger RNA 2om7 M 74 7.3 RF00005 URS000080E2DD_274 17349960 0030533 0006412 274 uccguganaacaaagcggnnauguaccggauuuuuauuccggcuaunggggnucaauuccccgucgcggagcca <<<<<<<..<<<.........>>>.<<<<<.......>>>>>....<<<<<.......>>>>>>>>>>>>.... (((((((..(((.....[...))).(((((.......)))))....(((((..]....)))))))))))).... Structural Basis for Interaction of the Ribosome with the Switch Regions of GTP-bound Elongation Factors; p/E-tRNA 2pxb B 49 2.5 RF00169 URS000080E210_32630 17637337 0006617 0048501 32630 ggugcuguuuaccaggucagguccgaaaggaagcagccaaggcagugcc <<<<<<<<<<....<<<....<<<....>>>....>>>.>>>>>>>>>> (((.((((((....(((....(((....)))....))).)))))).))) Variant 2 of Ribonucleoprotein Core of the E. Coli Signal Recognition Particle; 4.5 S RNA 2pxd B 49 2.0 RF00169 URS000080E1B6_32630 17637337 0006617 0048501 32630 ggggcuguuuaccaggucagguccgaaaggaagcagccaaggcaguucc <<<<<<<<<<....<<<....<<<....>>>....>>>.>>>>>>>>>> ((((((((((....(((....(((....)))....))).)))))))))) Variant 1 of Ribonucleoprotein Core of the E. Coli Signal Recognition Particle; 4.5 S RNA 2pxe B 49 2.0 RF00169 URS000080E2BA_32630 17637337 0006617 0048501 32630 gggucuguuuaccaggucagguccgaaaggaagcagccaaggcaggucc <<<<<<<<<<....<<<....<<<....>>>....>>>.>>>>>>>>>> ((((((((((....(((....(((....)))....))).)))))))))) Variant 4 of Ribonucleoprotein Core of the E. Coli Signal Recognition Particle; 4.5 S RNA 2pxp B 49 2.5 RF00169 URS000080DFAC_32630 17637337 0006617 0048501 32630 ggggcuguuuaccaggucagguccgaaaggaagcagccaaggcagcucc <<<<<<<<<<....<<<....<<<....>>>....>>>.>>>>>>>>>> ((((((((((....(((....(((....)))....))).)))))))))) Variant 13 of Ribonucleoprotein Core of the E. Coli Signal Recognition Particle; 4.5 S RNA 2pxq B 49 2.5 RF00169 URS000080E073_32630 17637337 0006617 0048501 32630 gggccuguuuaccaggucagguccgaaaggaagcagccaaggcaggucc <<<<<<<<<<....<<<....<<<....>>>....>>>.>>>>>>>>>> ((((((((((....(((....(((....)))....))).)))))))))) Variant 14 of Ribonucleoprotein Core of the E. Coli Signal Recognition Particle; 4.5 S RNA 2pxt B 49 2.5 RF00169 URS000080E32F_32630 17637337 0006617 0048501 32630 gcugcuguuuaccaggucagguccgaaaggaagcagccaaggcagcggc <<<<<<<<<<....<<<....<<<....>>>....>>>.>>>>>>>>>> ((((((((((....(((....(((....)))....))).)))))))))) Variant 15 of Ribonucleoprotein Core of the E. Coli Signal Recognition Particle; 4.5 S RNA 2pxu B 49 2.5 RF00169 URS000080E2C9_32630 17637337 0006617 0048501 32630 ggugcuguuuaccaggucagguccgaaaggaagcagccaaggcagcgcc <<<<<<<<<<....<<<....<<<....>>>....>>>.>>>>>>>>>> ((((((((((....(((....(((....)))....))).)))))))))) Variant 16 of Ribonucleoprotein Core of the E. Coli Signal Recognition Particle; 4.5 S RNA 2qbz X 153 2.6 RF00380 URS000080E29A_1423 17803910 0010468,0032026 1423 gggcuucguuaggugaggcuccuguauggagauacgcugcugcccaaaaauguccaaagacgccaaugggucaacagaaaucaucgacauaaggugauuuuuaaugcagcuggccuaugccauacagugcuaaagcucuacgauugaagccca <<<<<<<<<..<<<..<<<..<<<<<<<<......<<<<<.<<<<<....<<<<....>>>>....>>>>>.....<<<<<<<<<.......>>>>>>>>>....>>>>>.<..>....>>>>>>>>.>>>...>>>..>>....>>>>>>>. ((((((((([.(((..(((..((((((((......(((((((((((.....(((....))).....))))).....(((((((((......])))))))))..).))))).........)))))))).)))...)))..))....))))))). Structure of the M-Box Riboswitch Aptamer Domain; M-Box RNA, ykoK riboswitch aptamer 2r8s R 159 1.95 RF00028 URS000080E2DA_32630 18162543 0000372 32630 ggaauugcgggaaaggggucaacagccguucaguaccaagucucaggggaaacuuugagauggccuugcaaaggguaugguaauaagcugacggacaugguccuaacacgcagccaaguccuaagucaacagaucuucuguugauauggaugcaguuca .....<<<<.<...<<<<<<.....<<<.<<<<.<<...<<<<<<<<<....>>>>>>>>>..<<.......>>.....>>......>>>>>>>....>>>>>>..>.>>>><<...<<<<...<<<<<<<<.....>>>>>>>>..>>>>...>>... .....((((.(...((((((.....(((.((((.(((..(((((((((....)))))))))..((.......))....)))......)))))))....))))))..).))))((...((((...(((((((.......)))))))..))))...))... High resolution structure of a specific synthetic FAB bound to P4-P6 RNA ribozyme domain; P4-P6 RNA RIBOZYME DOMAIN 2rd2 B 74 2.6 RF00005 URS0000115891_562 18477696 0030533 0006412 562 gggguaucgccaagcgguaaggcaccggauucugauuccggcauuccgagguucgaauccucguaccccagcca <<<<<<..<<<.........>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..(((.....[...))).(((((.......))))).....(((((..]....)))))))))))..... Glutaminyl-tRNA synthetase mutant C229R with bound analog 5'-O-[N-(L-GLUTAMINYL)-SULFAMOYL]ADENOSINE; Glutamine tRNA 2re8 B 74 2.6 RF00005 URS0000115891_562 18477696 0030533 0006412 562 gggguaucgccaagcgguaaggcaccggauucugauuccggcauuccgagguucgaauccucguaccccagcca <<<<<<..<<<.........>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..(((.....[...))).(((((.......))))).....(((((..]....)))))))))))..... Glutaminyl-tRNA synthetase mutant C229R with bound analog 5'-O-[N-(L-GLUTAMYL)-SULFAMOYL]ADENOSINE; Glutamine tRNA 2rkj C 238 4.5 RF00028 URS000080E20D_55510 18172503 0000372 55510 gagccuuuauacaguaauguauaucgaaaaauccucuaauucagggaacaccuaaacauguaggcaauccugagcuaagcucugcggaaacgcagagaaagugcaacgacuauuccgauaggaaguagggucaagugacucgaaauggggauuacccuucuaggguagugauauagucugaacauauauggaaacauauagaaggauaggaguaacgaaccuauccguaacauaauug .......<<<<<<....>>>>>>.......<<<<<<....<<<<<<....<<<..<<..>>>>>...>>>>>><<<...<<<<<<<....>>>>>>>..>>>.....((((.<<<<....>>>>...<<<<<..[.>>>>>.....>>>>>><<<<<.....>>>>>.......))))..<<..<<<<<<....>>>>>>...<<<<<<<.....]...>>>>>>>.........>>. ....(..((((((....))))))..)....((((((....((((((.....((...(()).))....)))))).((...(((((((....)))))))..))....[.[[[[.((((....))))...(((((....))))).....))))))(((((.....))))).......]]]]].((..((((((....))))))...(((((((.........))))))).........)). Cocrystal structure of a tyrosyl-tRNA synthetase splicing factor with a group I intron RNA; RNA (238-MER) 2rkj G 238 4.5 RF00028 URS000080E20D_55510 18172503 0000372 55510 gagccuuuauacaguaauguauaucgaaaaauccucuaauucagggaacaccuaaacauguaggcaauccugagcuaagcucugcggaaacgcagagaaagugcaacgacuauuccgauaggaaguagggucaagugacucgaaauggggauuacccuucuaggguagugauauagucugaacauauauggaaacauauagaaggauaggaguaacgaaccuauccguaacauaauug .......<<<<<<....>>>>>>.......<<<<<<....<<<<<<....<<<..<<..>>>>>...>>>>>><<<...<<<<<<<....>>>>>>>..>>>.....((((.<<<<....>>>>...<<<<<..[.>>>>>.....>>>>>><<<<<<...>>>>>>.......))))..<<..<<<<<<....>>>>>>...<<<<<<<.....]...>>>>>>>.........>>. ....(..((((((....))))))..)....((((((....((((((.....((...(()).))....)))))).((...(((((((....)))))))..))....[.[[[[.((((....))))...(((((....))))).....))))))(((((.....))))).......]]]]].((..((((((....))))))...(((((((.........))))))).........)). Cocrystal structure of a tyrosyl-tRNA synthetase splicing factor with a group I intron RNA; RNA (238-MER) 2rkj K 238 4.5 RF00028 URS000080E20D_55510 18172503 0000372 55510 gagccuuuauacaguaauguauaucgaaaaauccucuaauucagggaacaccuaaacauguaggcaauccugagcuaagcucugcggaaacgcagagaaagugcaacgacuauuccgauaggaaguagggucaagugacucgaaauggggauuacccuucuaggguagugauauagucugaacauauauggaaacauauagaaggauaggaguaacgaaccuauccguaacauaauug .......<<<<<<....>>>>>>.......<<<<<<....<<<<<<....<<<..<<..>>>>>...>>>>>><<<...<<<<<<<....>>>>>>>..>>>.....((((.<<<<....>>>>...<<<<<..[.>>>>>.....>>>>>><<<<<<...>>>>>>.......))))..<<..<<<<<<....>>>>>>...<<<<<<<.....]...>>>>>>>.........>>. ....(..((((((....))))))..)....((((((....((((((.....((...(()).))....)))))).((...(((((((....)))))))..))....[.[[[[.((((....))))...(((((....))))).....))))))(((((.....))))).......]]]]].((..((((((....))))))...(((((((.........))))))).........)). Cocrystal structure of a tyrosyl-tRNA synthetase splicing factor with a group I intron RNA; RNA (238-MER) 2rkj O 238 4.5 RF00028 URS000080E20D_55510 18172503 0000372 55510 gagccuuuauacaguaauguauaucgaaaaauccucuaauucagggaacaccuaaacauguaggcaauccugagcuaagcucugcggaaacgcagagaaagugcaacgacuauuccgauaggaaguagggucaagugacucgaaauggggauuacccuucuaggguagugauauagucugaacauauauggaaacauauagaaggauaggaguaacgaaccuauccguaacauaauug .......<<<<<<....>>>>>>.......<<<<<<....<<<<<<....<<<..<<..>>>>>...>>>>>><<<...<<<<<<<....>>>>>>>..>>>.....((((.<<<<....>>>>...<<<<<..[.>>>>>.....>>>>>><<<<<.....>>>>>.......))))..<<..<<<<<<....>>>>>>...<<<<<<<.....]...>>>>>>>.........>>. ....(..((((((....))))))..)....((((((....((((((.....((...(()).))....)))))).((...(((((((....)))))))..))....[.[[[[.((((....))))...(((((....))))).....))))))(((((.....))))).......]]]]].((..((((((....))))))...(((((((.........))))))).........)). Cocrystal structure of a tyrosyl-tRNA synthetase splicing factor with a group I intron RNA; RNA (238-MER) 2tra A 73 3.0 RF00005 URS00005AD0B9_4932 3272146 0030533 0006412 4932 uccgugauaguuuaanggncagaaugggcgcuugucncgugccagaunggggnucaauuccccgucgcggagc <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>....<<<<<.......>>>>>>>>>>>>.. (((((((..(((.....[....))).(((((.......)))))....(((((..]....)))))))))))).. RESTRAINED REFINEMENT OF TWO CRYSTALLINE FORMS OF YEAST ASPARTIC ACID AND PHENYLALANINE TRANSFER RNA CRYSTALS; TRNAASP 2v0g B 76 3.5 RF00005 URS000080E15F_274 17588934 0030533 0006412 274 gccgggguggcggaagguagacgcgcaugacaucaugugcgcaagcgugcggguucaagucccgcccccggcaccn <<<<<<<..<<<.........>>><<<<<<..>>>>>><<....>>..<<<<<.......>>>>>>>>>>>>.... (.(((((..(((....[....)))(((((....)))))((....))..(((((..]....)))))))))).).... LEUCYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS COMPLEXED WITH A tRNA(leu) transcript with 5-FLUORO-1,3-DIHYDRO-1-HYDROXY-2,1- BENZOXABOROLE (AN2690) forming an adduct to the ribose of adenosine- 76 in the enzyme editing site.; TRNALEU 2v0g F 76 3.5 RF00005 URS000080E15F_274 17588934 0030533 0006412 274 gccgggguggcggaagguagacgcgcaugacaucaugugcgcaagcgugcggguucaagucccgcccccggcaccn <<<<<<<..<<<.........>>><<<<<<..>>>>>><<....>>..<<<<<.......>>>>>>>>>>>>.... (((((((..(((....[....)))((((((..))))))((....))..(((((..]....)))))))))))).... LEUCYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS COMPLEXED WITH A tRNA(leu) transcript with 5-FLUORO-1,3-DIHYDRO-1-HYDROXY-2,1- BENZOXABOROLE (AN2690) forming an adduct to the ribose of adenosine- 76 in the enzyme editing site.; TRNALEU 2v3c M 96 2.5 RF00169 URS000080DDBC_2190 17846429 0006617 0048501 2190 ggcggugggggagcaucuccuguaggggagauguaacccccuuuaccugccgaaccccgccaggcccggaagggagcaacgguaggcaggacgucg .<<<..<<<<<.<<<<<<<<<....>>>>>>>>>..>>>>>....<<<<<<.....<<<...<.<<<....>>>..>..>>>..>>>>>>.>>>.. ((((..(((((.(((((((((....)))))))))..))))).....(((((.....(((.....(((....))).....)))..)))))..)))). Crystal structure of the SRP54-SRP19-7S.S SRP RNA complex of M. jannaschii; 7S RNA 2v3c N 96 2.5 RF00169 URS000080DDBC_2190 17846429 0006617 0048501 2190 ggcggugggggagcaucuccuguaggggagauguaacccccuuuaccugccgaaccccgccaggcccggaagggagcaacgguaggcaggacgucg .<<<..<<<<<.<<<<<<<<<....>>>>>>>>>..>>>>>....<<<<<<.....<<<.....<<<....>>>.....>>>..>>>>>>.>>>.. ..((..(((((.(((((((((....)))))))))..)))))....((((((.....(((.....(((....))).....)))..)))))).))... Crystal structure of the SRP54-SRP19-7S.S SRP RNA complex of M. jannaschii; 7S RNA 2vaz A 82 10.0 RF00114 URS0002335951_562 17889647 0045974 562 acgucgcguaaauuguuuaacacuuugcguaacguacacugggaucgcugaauuagagaucggcgucuaaggaggucucuaa <<<<.<<<<<<<...........>>>>>>>.>>>>.......[.[.(((((.<<<<<<.)))))]]..........>>>>>> ..((..((((((..(.....)..))))))..))............[[[.[[.((((((.]].]]]...........)))))) Model of the S15-mRNA complex fitted into the cryo-EM map of the 70S entrapment complex.; RPSO MRNA OPERATOR 2xkv B 96 13.5 RF00169 URS000080E14C_562 21151118 0006617 0048501 562 cucuguugguucucugugcucugugcucuguuuaccaggucagguccgaaaggaagcagccaaggcagagacgcagagcaggcagauguagcuggc .........<..........<<<...<<<<<<.....<<<..<.<<......>>..>.>>>..>>>>>.>...>>>..............>..... ..............(.....((......((.......((.....(((....))).....))....)).......))........)........... Atomic Model of the SRP-FtsY Early Conformation; 4.5S RNA 2xnw A 65 1.5 RF00167 URS000080DFC3_1423 21439477 0009113 1423 gacauauaaucgcguggauauggcacgcaaguuucuaccgggcaccguaaauguccgauuauguc <<<<<<...<.<<<<<.....<<>>>>>.>........<<<<<<>>.....>>>>>>..>>>>>> (((((((..(.(((((.....[[))))).)[.....)]((((((]].....))))))..)))))) XPT-PBUX C74U RIBOSWITCH FROM B. SUBTILIS BOUND TO A TRIAZOLO- TRIAZOLE-DIAMINE LIGAND IDENTIFIED BY VIRTUAL SCREENING; GUANINE RIBOSWITCH 2xnz A 65 1.59 RF00167 URS000080DFC3_1423 21439477 0009113 1423 gacauauaaucgcguggauauggcacgcaaguuucuaccgggcaccguaaauguccgauuauguc <<<<<<...<.<<<<<.....<<>>>>>.><......><<<<<<>>.....>>>>>>..>>>>>> (((((((..(.(((((.....[[))))).)[.....)]((((((]].....))))))..)))))) xpt-pbuX C74U Riboswitch from B. subtilis bound to acetoguanamine identified by virtual screening; Guanine riboswitch 2xo0 A 65 1.7 RF00167 URS000080DFC3_1423 21439477 0009113 1423 gacauauaaucgcguggauauggcacgcaaguuucuaccgggcaccguaaauguccgauuauguc <<<<<<...<.<<<<<.....<<>>>>>.><......><<<<<<>>.....>>>>>>..>>>>>> (((((((..(.(((((.....[[))))).)[.....)]((((((]].....))))))..)))))) xpt-pbuX C74U Riboswitch from B. subtilis bound to 24-diamino-1,3,5- triazine identified by virtual screening; Guanine riboswitch 2xo1 A 65 1.6 RF00167 URS00008FED1E_1423 21439477 0009113 1423 aacauauaaucgcguggauauggcacgcaaguuucuaccgggcaccguaaauguccgauuauguc .<<<<<...<.<<<<<.....<<>>>>>.>........<<<<<<>>.....>>>>>>..>>>>>. .((((((..(.(((((.....[[))))).)[.....)]((((((]].....))))))..))))). xpt-pbuX C74U Riboswitch from B. subtilis bound to N6-methyladenine; Guanine riboswitch 2xxa F 102 3.94 RF00169 URS00003F3490_1299 21330537 0006617 0048501 1299 gcauugcuggugcagcgcagcgcggacgcccgaaccuggucagagccggaaggcagcagccauaagggaugcuuugcgggugccguugccuuccggcaaugc <<<<<<<<<<.<<<<<<<<.<<<<<<<<<<<.....<<<<..<.<<<....>>>..>.>>>>...>>>.>>.>>>>>>..>>.>>>>>>...>>>>>>>>>> ((((((((((.((((((((.(((((((((((.....((((....(((....)))....))))...))).)).))))))..)).))))))...)))))))))) The Crystal Structure of the Signal Recognition Particle (SRP) in Complex with its Receptor(SR); 4.5S RNA 2xxa G 102 3.94 RF00169 URS00003F3490_1299 21330537 0006617 0048501 1299 gcauugcuggugcagcgcagcgcggacgcccgaaccuggucagagccggaaggcagcagccauaagggaugcuuugcgggugccguugccuuccggcaaugc <<<<<<<<<<.<<<<<<<<.<<<<<<<<<<<.....<<<<..<.<<<....>>>..>.>>>>...>>>.>>.>>>>>>..>>.>>>>>>...>>>>>>>>>> ((((((((((.((((((((.(((((((((((.....((((....(((....)))....))))...))).)).))))))..)).))))))...)))))))))) The Crystal Structure of the Signal Recognition Particle (SRP) in Complex with its Receptor(SR); 4.5S RNA 2ydh A 94 2.9 RF00162 URS000080E1B3_119072 21893284 0010468 119072 ggcuuaucaagagagguuuagggacuggcccgacgaaacccggcaaccagaaauggugccaauuccugcagcggaaacguugaaagaugagccg <<<<<<<<......<<<<..<<<...((>>>.....>>>>.<<<<.<<<....>>>>>>>....))<.<<<<<....>>>>>..>>>>>>>>>. ((((((((....(.(((...(((.[.[[)))......))))(((..(((....))).)))...(]].](((((....)))))..))))))))). Crystal structure of the SAM-I riboswitch A94G U34 G18U G19U variant in complex with SAM; SAM-I RIBOSWITCH 2ygh A 95 2.6 RF00162 URS0000BC4670_119072 21893284 0010468 119072 ggcuuaucaagagaggugaagggacuggcccgacgaaacccggcaaccagaaauggugccaauuccugcagcggaaacguugaaagaugagccga <<<<<<<<......<<<...<<<...((>>>......>>>.<<<<.<<<....>>>>>>>....))..<<<<<....>>>>>...>>>>>>>>.. ((((((((....(.(((...(((.[.[[)))......))))(((..(((....))).)))...(]].](((((....)))))..))))))))).. SAM-I riboswitch with a G2nA mutation in the Kink turn in complex with S-adenosylmethionine; SAM-I RIBOSWITCH 2z74 B 123 2.2 RF00234 URS000080DF18_119072 17804015 0003824 0010468 119072 ggcuuuaaguugacgagggcaggguuuaucgagacaucggcgggugcccugcggucuuccugcgaccguuagaggacugguaaaaccacaggcgacuguggcauagagcaguccgggcaggaa .............(((...<<<<<<...)))..............>>>>>>(((((.<<<<<<))))).....<<<<<<......<<<<<<....>>>>>>.......>>>>>>..>>>>>>. .............[[[...((((((...]]]..............))))))[[[[[.((((((]]]]].....((((((......((((((....)))))).......))))))..)))))). T. tengcongensis glmS ribozyme bound to glucose-6-phosphate; glmS ribozyme RNA 2z75 B 123 1.7 RF00234 URS000080DF18_273068 17804015 0003824 0010468 273068 ggcuuuaaguugacgagggcaggguuuaucgagacaucggcgggugcccugcggucuuccugcgaccguuagaggacugguaaaaccacaggcgacuguggcauagagcaguccgggcaggaa .............(((...<<<<<<...)))..............>>>>>>(((((.<<<<<<))))).....<<<<<<......<<<<<<....>>>>>>.......>>>>>>..>>>>>>. .............[[[...((((((...]]]..............))))))[[[[[.((((((]]]]].....((((((......((((((....)))))).......))))))..)))))). T. tengcongensis glmS ribozyme bound to glucosamine-6-phosphate; glmS ribozyme RNA 2z9q A 75 11.7 RF00005 URS000080E1EE_271 12859903 0030533 0006412 271 cggauuuancucagnngggagagcnccaganunaanaunuggagnucnugugnucgnuccacagaauucgcacca ..<<.<<.<<<..........>>>.<<<<<.......>>>>>....(<<<<<...)...>>>>>>>>>....... ...((...(((..........))).(((((.......))))).....((((.........)))).))........ Transfer RNA in the hybrid P/E state; tRNA 2zm5 C 74 2.55 RF00005 URS00005AA258_83333 19435325 0030533 0006412 83333 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcac <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.. (((((((..((((.....[..)))).(((((.......))))).....(((((..]....)))))))))))).. Crystal structure of tRNA modification enzyme MiaA in the complex with tRNA(Phe); tRNA(Phe) 2zm5 D 69 2.55 RF00005 URS00005AA258_83333 19435325 0030533 0006412 83333 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccg ...<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>> ....(((..((((.....[..)))).(((((.......))))).....(((((..]....)))))))). Crystal structure of tRNA modification enzyme MiaA in the complex with tRNA(Phe); tRNA(Phe) 2zue B 76 2.0 RF00005 URS00000D2896_53953 19656186 0030533 0006412 53953 ggaccgguagccuagccaggacagggcggcggccuccuaagccgcagguccgggguucaaauccccgccgguccgc <<<<<<<..<<<<..........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.. (((((((..((((......[...)))).(((((.......))))).....(((((..]....)))))))))))).. Crystal structure of Pyrococcus horikoshii arginyl-tRNA synthetase complexed with tRNA(Arg) and an ATP analog (ANP); tRNA-Arg 2zuf B 76 2.3 RF00005 URS00000D2896_32630 19656186 0030533 0006412 32630 ggaccgguagccuagccaggacagggcggcggccuccuaagccgcagguccgggguucaaauccccgccgguccgc <<<<<<<..<<<<..........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.. (((((((..((((......[...)))).(((((.......))))).....(((((..]....)))))))))))).. Crystal structure of Pyrococcus horikoshii arginyl-tRNA synthetase complexed with tRNA(Arg); tRNA-Arg 2zxu C 74 2.75 RF00005 URS00005AA258_83333 19435325 0030533 0006412 83333 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcac <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.. (((((((..((((.....[..)))).(((((.......))))).....(((((..]....)))))))))))).. Crystal structure of tRNA modification enzyme MiaA in the complex with tRNA(Phe) and DMASPP; tRNA(Phe) 2zxu D 69 2.75 RF00005 URS00005AA258_83333 19435325 0030533 0006412 83333 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccg ...<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>> ....(((..((((.....[..)))).(((((.......))))).....(((((..]....)))))))). Crystal structure of tRNA modification enzyme MiaA in the complex with tRNA(Phe) and DMASPP; tRNA(Phe) 2zzm B 84 2.65 RF00005 URS00001612D2_2190 19749755 0030533 0006412 2190 gcaggggucgccaagccuggccaaaggcgcugggccuaggacccagucccguagggguuccaggguucaaaucccugccccugc ....<<<..<<<.............>>><<<<<<.......>>>>>><<<....>>>...<<<<<.......>>>>>>>>.... ....(((..(((.......[.....)))((((((.......))))))(((....)))...(.(((..]....))).)))).... The complex structure of aTrm5 and tRNALeu; RNA (84-MER) 2zzn C 71 2.95 RF00005 URS00000B8EA0_2190 19749755 0030533 0006412 2190 gccgggguagucuaggggcuaggcagcggacugcagauccgccuuacguggguucaaaucccacccccggc <<<<<<<..<<<<.......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>> (((((((..((((....[..)))).(((((.......))))).....(((((..]....)))))))))))) The complex structure of aTrm5 and tRNACys; RNA (71-MER) 2zzn D 71 2.95 RF00005 URS00000B8EA0_2190 19749755 0030533 0006412 2190 gccgggguagucuaggggcuaggcagcggacugcagauccgccuuacguggguucaaaucccacccccggc <<<<<<<..<<<<.......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>> (((((((..((((....[..)))).(((((.......))))).....(((((..]....)))))))))))) The complex structure of aTrm5 and tRNACys; RNA (71-MER) 3a2k C 77 3.65 RF00005 URS000080E29F_1423 19847269 0030533 0006412 1423 ggaccuuuagcucaguugguuagagcagacggcucauaaccguccggccguagguucgaguccuacaagguccacca <<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[...)))).(((((.......))))).....(((((..]....)))))))))))).... Crystal structure of TilS complexed with tRNA; bacterial tRNA 3a2k D 77 3.65 RF00005 URS000080E29F_1423 19847269 0030533 0006412 1423 ggaccuuuagcucaguugguuagagcagacggcucauaaccguccggccguagguucgaguccuacaagguccacca <<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[...)))).(((((.......))))).....(((((..]....)))))))))))).... Crystal structure of TilS complexed with tRNA; bacterial tRNA 3a3a A 86 3.1 RF01852,RF00005 URS000014E598_9606 19692584 0030533 0006412 9606 gcccggaugauccucaguggucuggggugcaggcuucaaaccuguagcugucuagcgacagagugguucaauuccaccuuucgggc <<<<<<<....<<<<<<....>>>>>><<<<<<.......>>>>>>.<<<<<....>>>>>.<<<<.......>>>>..>>>>>>> (((((((.(..((((((..[.))))))((((((.......)))))).(((((....))))).((((..]....))))).))))))) Crystal structure of human selenocystine tRNA; selenocysteine tRNA 3adb C 92 2.8 RF01852 URS000080DE1A_2320 20705242 0030533 0006412 2320 ggccgccgccaccggggugguccccgggccggacuucagauccggcgcgccccgaguggggcgcgggguucaauuccccgcggcggccgcca <<<<<<<<<..<<<<<<....>>>>>><<<<<<.......>>>>>><<<<<<<....>>>>>>><<<<.......>>>>>>>>>>>>>.... (((((((((..((((((..[.))))))((((((.......))))))(((((((....)))))))((((..]....))))))))))))).... Crystal structure of O-phosphoseryl-tRNA kinase complexed with selenocysteine tRNA and AMPPNP (crystal type 1); selenocysteine tRNA 3adb D 92 2.8 RF01852 URS000080DE1A_2320 20705242 0030533 0006412 2320 ggccgccgccaccggggugguccccgggccggacuucagauccggcgcgccccgaguggggcgcgggguucaauuccccgcggcggccgcca <<<<<<<<<..<<<<<<....>>>>>><<<<<<.......>>>>>><<<<<<<....>>>>>>><<<<.......>>>>>>>>>>>>>.... (((((((((..((((((..[.))))))((((((.......))))))(((((((....)))))))((((..]....))))))))))))).... Crystal structure of O-phosphoseryl-tRNA kinase complexed with selenocysteine tRNA and AMPPNP (crystal type 1); selenocysteine tRNA 3adc C 88 2.9 RF01852 URS000080DE1A_2320 20705242 0030533 0006412 2320 ggccgccgccaccggggugguccccgggccggacgauccggcgcgccccgaguggggcgcgggguucaauuccccgcggcggccgcca <<<<<<<<<..<<<<<<....>>>>>><<<<<<...>>>>>><<<<<<<....>>>>>>><<<<.......>>>>>>>>>>>>>.... (((((((((..((((((..[.))))))((((((...))))))(((((((....)))))))((((..]....))))))))))))).... Crystal structure of O-phosphoseryl-tRNA kinase complexed with selenocysteine tRNA and AMPPNP (crystal type 2); selenocysteine tRNA 3adc D 92 2.9 RF01852 URS000080DE1A_2320 20705242 0030533 0006412 2320 ggccgccgccaccggggugguccccgggccggacuucagauccggcgcgccccgaguggggcgcgggguucaauuccccgcggcggccgcca <<<<<<<<<..<<<<<<....>>>>>><<<<<<.......>>>>>><<<<<<<....>>>>>>><<<<.......>>>>>>>>>>>>>.... (((((((((..((((((..[.))))))((((((.......))))))(((((((....)))))))((((..]....))))))))))))).... Crystal structure of O-phosphoseryl-tRNA kinase complexed with selenocysteine tRNA and AMPPNP (crystal type 2); selenocysteine tRNA 3add C 88 2.4 RF01852 URS000080DE1A_2320 20705242 0030533 0006412 2320 ggccgccgccaccggggugguccccgggccggacgauccggcgcgccccgaguggggcgcgggguucaauuccccgcggcggccgcca <<<<<<<<<..<<<<<<....>>>>>><<<<<<...>>>>>><<<<<<<....>>>>>>><<<<.......>>>>>>>>>>>>>.... (((((((((..((((((..[.))))))((((((...))))))(((((((....)))))))((((..]....))))))))))))).... Crystal structure of O-phosphoseryl-tRNA kinase complexed with selenocysteine tRNA and AMPPNP (crystal type 3); selenocysteine tRNA 3add D 88 2.4 RF01852 URS000080DE1A_2320 20705242 0030533 0006412 2320 ggccgccgccaccggggugguccccgggccggacuagauccggcgcgccccgaguggggcgcgggguucaauuccccgcggcggccgc <<<<<<<<<..<<<<<<....>>>>>><<<<<<.....>>>>>><<<<<<<....>>>>>>><<<<.......>>>>>>>>>>>>>.. (((((((((..((((((..[.))))))((((((.....))))))(((((((....)))))))((((..]....))))))))))))).. Crystal structure of O-phosphoseryl-tRNA kinase complexed with selenocysteine tRNA and AMPPNP (crystal type 3); selenocysteine tRNA 3akz F 74 2.9 RF00005 URS000002EA11_2336 20882017 0030533 0006412 2336 ugggaggucgucuaacgguaggacggcggacucuggauccgcugguggagguucgaguccuccccucccagcca <<<<<<<..<<<<.......>>>>.<<<<<.......>>>>>....<<<<<.......>>>>>>>>>>>>.... (((((((..((((....[..)))).(((((.......)))))....(((((..]....)))))))))))).... Crystal structure of Thermotoga maritima nondiscriminating glutamyl-tRNA synthetase in complex with tRNAGln and a glutamyl-AMP analog; tRNAGln 3akz H 74 2.9 RF00005 URS000002EA11_2336 20882017 0030533 0006412 2336 ugggaggucgucuaacgguaggacggcggacucuggauccgcugguggagguucgaguccuccccucccagcca <<<<<<<..<<<<.......>>>><<<<<<.......>>>>>>...<<<<<.......>>>>>>>>>>>>.... (((((((..((((....[..)))).(((((.......)))))....(((((..]....)))))))))))).... Crystal structure of Thermotoga maritima nondiscriminating glutamyl-tRNA synthetase in complex with tRNAGln and a glutamyl-AMP analog; tRNAGln 3akz G 74 2.9 RF00005 URS000002EA11_2336 20882017 0030533 0006412 2336 ugggaggucgucuaacgguaggacggcggacucuggauccgcugguggagguucgaguccuccccucccagcca <<<<<<<..<<<<.......>>>><<<<<<.......>>>>>>...<<<<<.......>>>>>>>>>>>>.... (((((((..((((.......)))).(((((.......)))))....(((((.......)))))))))))).... Crystal structure of Thermotoga maritima nondiscriminating glutamyl-tRNA synthetase in complex with tRNAGln and a glutamyl-AMP analog; tRNAGln 3akz E 74 2.9 RF00005 URS000002EA11_2336 20882017 0030533 0006412 2336 ugggaggucgucuaacgguaggacggcggacucuggauccgcugguggagguucgaguccuccccucccagcca <<<<<<<..<<<<.......>>>><<<<<<.......>>>>>>...<<<<<.......>>>>>>>>>>>>.... (((((((..((((.......)))).(((((.......)))))....(((((.......)))))))))))).... Crystal structure of Thermotoga maritima nondiscriminating glutamyl-tRNA synthetase in complex with tRNAGln and a glutamyl-AMP analog; tRNAGln 3al0 E 74 3.368 RF00005 URS000002EA11_32630 20882017 0030533 0006412 32630 ugggaggucgucuaacgguaggacggcggacucuggauccgcugguggagguucgaguccuccccucccagcca <<<<<<<..<<<<.......>>>><<<<<<.......>>>>>>...<<<<<.......>>>>>>>>>>>>.... (((((((..((((....[..))))((((((.......))))))...(((((..]....)))))))))))).... Crystal structure of the glutamine transamidosome from Thermotoga maritima in the glutamylation state.; tRNAGln 3amt B 78 2.9 RF00005 URS000080E317_2234 22002223 0030533 0006412 2234 gggcccguagcuuagccaggucagagcgcccggcucauaaccgggcggucgaggguucgaaucccuccgggcccacca <<<<<<<..<<<<..........>>>><<<<<.........>>>>>....<<<<<.......>>>>>>>>>>>>.... (((((((..((((......[...))))(((((.........)))))....(((((..]....)))))))))))).... Crystal structure of the TiaS-tRNA(Ile2)-ATP complex; RNA (78-MER) 3amu B 78 3.1 RF00005 URS000080E317_2234 22002223 0030533 0006412 2234 gggcccguagcuuagccaggucagagcgcccggcucauaaccgggcggucgaggguucgaaucccuccgggcccacca <<<<<<<..<<<<..........>>>>.<<<<.........>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((......[...))))(((((.........)))))....(((((..]....)))))))))))).... Crystal structure of the TiaS-tRNA(Ile2)-AMPCPP-agmatine complex; RNA (78-MER) 3b0v A 73 3.51 RF00005 URS0000490B64_300852 22123979 0030533 0006412 300852 gccgagguagcucaguuggnagagcaugcgacugaaaaucgcagugucggcgguucgauuccgccccucggca <<<<.<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>.>>>>. ((((.(...((((.....[..))))..((((.......))))......(((((..]....))))).).)))). tRNA-dihydrouridine synthase from Thermus thermophilus in complex with tRNA; tRNA 3b0v B 73 3.51 RF00005 URS0000490B64_300852 22123979 0030533 0006412 300852 gccgagguagcucaguuggnagagcaugcgacugaaaaucgcagugucggcgguucgauuccgccccucggca <<<<.<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>.>>>>. (.((.(...((((.....[..))))..((((.......))))......(((((..]....))))).).)).). tRNA-dihydrouridine synthase from Thermus thermophilus in complex with tRNA; tRNA 3b4a B 122 2.7 RF00234 URS000080E06F_119072 17990888 0003824 0010468 119072 ggcuuuaaguugacgagagcaggguuuaucgagacaucggcgggugcccugcggucuccugcgaccguuagaggacugguaaaaccacaggcgacuguggcauagagcaguccgggcaggan .............(((...<<<<<<...)))..............>>>>>>(((((<<<<<<))))).....<<<<<<......<<<<<<....>>>>>>.......>>>>>>..>>>>>>. .............[[[...((((((...]]]..............))))))[[[[[((((((]]]]].....((((((......((((((....)))))).......))))))..)))))). T. tengcongensis glmS ribozyme with G40A mutation, bound to glucosamine-6-phosphate; glmS ribozyme RNA 3b4b B 123 2.7 RF00234 URS000080E06F_119072 17990888 0003824 0010468 119072 ggcuuuaaguugacgagagcaggguuuaucgagacaucggcgggugcccugcggucuuccugcgaccguuagaggacugguaaaaccacaggcgacuguggcauagagcaguccgggcaggaa .............(((...<<<<<<...)))..............>>>>>>(((((.<<<<<<))))).....<<<<<<......<<<<<<....>>>>>>.......>>>>>>..>>>>>>. .............[[[...((((((...]]]..............))))))[[[[[.((((((]]]]].....((((((......((((((....)))))).......))))))..)))))). T. tengcongensis glmS ribozyme with G40A mutation, bound to glucosamine-6-phosphate and a substrate RNA with a 2'5'-phosphodiester linkage; glmS ribozyme RNA 3b4c B 121 3.0 RF00234 URS000080DF18_119072 17990888 0003824 0010468 119072 ggcuuuaaguugacgagggcaggguuuaucgagacaucggcgggugcccugcggucuccugcgaccguuagaggacugguaaaaccacaggcgacuguggcauagagcaguccgggcagga .............(((...<<<<<<...)))..............>>>>>>((((..<<<<<.)))).....<<<<<<......<<<<<<....>>>>>>.......>>>>>>..>>>>>. .............[[[...((((((...]]]..............))))))[[[[..(((((.]]]].....((((((......((((((....)))))).......))))))..))))). T. tengcongensis glmS ribozyme bound to glucosamine-6-phosphate and a substrate RNA with a 2'5'-phosphodiester linkage; glmS ribozyme RNA 3bbv z 76 10.0 RF00005 URS00005AA258_274 19013177 0030533 0006412 274 gcccgganagcucagncggnagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((........)))).((((.........)))).....(((((.......)))))))))))).... The tRNA(phe) fitted into the low resolution Cryo-EM map of the 50S.nc-tRNA.Hsp15 complex; tRNA(Phe) 3bo2 B 197 3.31 RF00028 URS000080E37C_32630 18408159 0000372 32630 ngccgugugccuugcgccgggaaaccacgcaagggauggugucaaauucggcgaaaccuaagcgcccgcccgggcguauggcaacgccgagccaagcuucgcagccauugcacuccggcugcgaugaagguguagagacuagacggcacccaccuaaggcaaacgcuauggugaaggcauaguccagggaguggcgn .........<<<<<<<..<<....>>.>>>>>>>...<<<<<<....<<<<<<...<<...<<<<<......>>>>>..>>...>>>>>><<<.....<<<<<<<<..........>>>>>>>>....>>>.....(((((...>>>>>><<<<...<<<....>>>..>>>>......)))))............. .........(((((((..((....)).)))))))...((((((....((((((...((...((((((....))))))..))...))))))(((...(.((((.(((..........))).)))).)..)))...[.[[[[[...))))))((((...(((....)))..))))......]]]]]]............ A relaxed active site following exon ligation by a group I intron; Group I intron P9 3bo3 B 197 3.4 RF00028 URS000080E37C_32630 18408159 0000372 32630 ngccgugugccuugcgccgggaaaccacgcaagggauggugucaaauucggcgaaaccuaagcgcccgcccgggcguauggcaacgccgagccaagcuucgcagccauugcacuccggcugcgaugaagguguagagacuagacggcacccaccuaaggcaaacgcuauggugaaggcauaguccagggaguggcgn .........<<<<<<<..<<....>>.>>>>>>>...<<<<<<....<<<<<<...<<...<<<<<<....>>>>>>..>>...>>>>>><<<...<.<<<<<<<<..........>>>>>>>>.>..>>>.....(((((...>>>>>><<<<...<<<....>>>..>>>>......)))))............. .........(((((((..((....)).)))))))...((((((....((.(((...((...((((((....))))))..))...))).))(((...(.((((((((..........)))))))).)..)))...[.[[[[[...))))))((((...(((....)))..))))......]]]]]]............ A relaxed active site following exon ligation by a group I intron; Group I intron P9 3bo4 B 197 3.33 RF00028 URS000080E37C_32630 18408159 0000372 32630 ngccgugugccuugcgccgggaaaccacgcaagggauggugucaaauucggcgaaaccuaagcgcccgcccgggcguauggcaacgccgagccaagcuucgcagccauugcacuccggcugcgaugaagguguagagacuagacggcacccaccuaaggcaaacgcuauggugaaggcauaguccagggaguggcgn .........<<<<<<<..<<....>>.>>>>>>>...<<<<<<....<<<<<<...<<...<<<<<<....>>>>>>..>>...>>>>>><<<...<.<<<<<<<<..........>>>>>>>>.>..>>>.....(((((...>>>>>><<<<...<<<....>>>..>>>>......)))))............. .........(((((((..((....)).)))))))...((((((....((((((...((...((((((....))))))..))...))))))(((...(.((((((((..........)))))))).)..)))...[.[[[[[...))))))((((...(((....)))..))))......]]]]]]............ A relaxed active site following exon ligation by a group I intron; Group I intron P9 3bwp A 356 3.1 RF02001,RF01998 URS000080DD31_182710 18388288 0000373 182710 gugcccggcaugggugcagucuauagggugagagucccgaacugugaaggcagaaguaacaguuagccuaacgcaaggguguccguggcgacauggaaucugaaggaagcggacggcaaaccuucggucugaggaacacgaacuucauaggcuaauggaugaguuugcauaacaaaacaaaguccuuucugccaguuggugaagcagauugaugaagggaaagacugcauucuuacccggggaggucuggaaacagaagucagcagaagucauaguacccaggggaaggacggaacaaguauggcguucgcgccuaagcuugaaccgccguauaccgaacgguacguacgguggug [..<<<<<...<<<<<<<<<<<...<<<.......>>>..(((((...<<<<<<<...)))))..<<<...<<<..<<<<.<<<<<<....>>>>>>>>>>.......>>>...>>>...(((((((((((...........(((((......(((<<<<..<<<<........>>>>...>>>>.>>>>>>>.)))..))))))))))...))))))...>>>>>>>>>>>...]>>>>>....<<<<....>>>>...........<<<......<<<.>>>....>>>....<<<<<..<<<<....>>>>...>>>>>.<<<<<<<<<<<<<....>>>..>>>>>>>>>>. [<.((((({..(..((((((((...(((.......)))..(((((..A[[[[[[[...)))))..(((...(((..((((.((((((....))))))))))...>}.{)))...)))...((((((.((((...........(((((..[...(((((((..((((.]......))))...))))a]]]]]]].)))..)))))))))....))))))...))))))))..).}.])))))(...((((....))))...).......(((.(....(((.)))...))))....(((((.(((((....))))..)))))).(((((((((((((....)))..)))))))))). Crystal structure of a self-spliced group II intron; Group IIC intron 3cw1 V 138 5.493 RF00003 URS000080E05C_9606 19325628,10025403,21516107,15312772,10931958,7984237,2374709 0030627 0000395 0005685 9606 auacuuaccuggcaggggagauaccaugaucacgaaggugguuuucccaggggagacguccccugcgauuuccccaaaugugggaaacucgacugcauaauuugugguagugggggacugcguucgcgcuuuccccug ...........<<<<.<<<(...<<<<..........>>>>.>)>.><<.<<<......>>>.>><<<<<<<..........>>.>>.>>>.>>>>...............<.<<<...<<<....>>>..>.>>>.. ............((.........(((............))).........(((......)))....(((((((.........))))).))...)).................(((((..((......))..))))).. Crystal Structure of Human Spliceosomal U1 snRNP; U1 snRNA 3cw1 v 138 5.493 RF00003 URS000080E05C_9606 19325628,10025403,21516107,15312772,10931958,7984237,2374709 0030627 0000395 0005685 9606 auacuuaccuggcaggggagauaccaugaucacgaaggugguuuucccaggggagacguccccugcgauuuccccaaaugugggaaacucgacugcauaauuugugguagugggggacugcguucgcgcuuuccccug ...........<<<<.<<<(...<<<<..........>>>>.>)>.><<<.<<......>.>>>><<<<<<<....<...>.>>>>..>>>.>>>>...............<<<<<<..<<<....>>>..>>>>>>. ............((.........(((............))).........................(((((((.........))))).))...)).................(((((..((......))..))))).. Crystal Structure of Human Spliceosomal U1 snRNP; U1 snRNA 3cw1 w 138 5.493 RF00003 URS000080E05C_9606 19325628,10025403,21516107,15312772,10931958,7984237,2374709 0030627 0000395 0005685 9606 auacuuaccuggcaggggagauaccaugaucacgaaggugguuuucccaggggagacguccccugcgauuuccccaaaugugggaaacucgacugcauaauuugugguagugggggacugcguucgcgcuuuccccug ............<<<.(<<<...<<<<..........>>>>.)>>>.<.<<<<<....>>>>(>><<<<<<<....<...>)>>.>>.>>>.>>>........<...>...<<<<<<..<<<....>>>..>>>>>>. ............((...(.....(((............)))....)....(((......)))...(((.((((.........))).).)))..)).................(((((..((......))..))))).. Crystal Structure of Human Spliceosomal U1 snRNP; U1 snRNA 3cw1 x 138 5.493 RF00003 URS000080E05C_9606 19325628,10025403,21516107,15312772,10931958,7984237,2374709 0030627 0000395 0005685 9606 auacuuaccuggcaggggagauaccaugaucacgaaggugguuuucccaggggagacguccccugcgauuuccccaaaugugggaaacucgacugcauaauuugugguagugggggacugcguucgcgcuuuccccug ............<<<.<<<([.<<(............>>).>).].>>.<<<<.......>>>>.<<<<<<<<...<...>>>>.>>.>>>.>>>................<<<<<<..<<<....>>>..>>>>>>. ................((............................))..(((.......)))...((.((((.........))))..))......................(((((..((......))..))))).. Crystal Structure of Human Spliceosomal U1 snRNP; U1 snRNA 3cw5 A 77 3.1 RF00005 URS00001BBAFC_562 18653533 0030533 0006412 562 cgcggggnggagcagccuggnagcucgucgggnucauaacccgaagaucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... E. coli Initiator tRNA; Initiator tRNA 3cw6 A 77 3.3 RF00005 URS00001BBAFC_562 18653533 0030533 0006412 562 cgcggggnggagcagccuggnagcucgucgggnucauaacccgaagaucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... E. coli Initiator tRNA; Initiator tRNA 3d0u A 161 2.8 RF00168 URS000080DFA3_2336 18593706 0009085 2336 ggacggaggcgcgcccgagaugaguaggcugucccaucaggggaggaaucggggacggcugaaaggcgagggcgccgaagcgagcagaguuccucccgcucugcuuggcugggggugaggggaauacccuuaccacugucgcgaaagcggagagccgucca <<<<<<....<<<<<<..<.......<<<<<<<<<.....((((((.....>>>>>>>>>......>..>>>>>>...<<<<<<<<<<<<.))))))>>>>>>>>>.>>><<.<<<<<<<<.....>>>>>>>>.>>.<<<<....>>>>....>>>>>>. ((((((..(.((((((..(.......(((((((((..(..[[[[[[....))))))))))......)..)))))))..((((((((((((.]]]]]]))))))))).)))((.((((((((.....)))))))).)).((((....))))....)))))). Crystal Structure of Lysine Riboswitch Bound to Lysine; Lysine Riboswitch RNA 3d0x A 161 2.95 RF00168 URS000080DFA3_2336 18593706 0009085 2336 ggacggaggcgcgcccgagaugaguaggcugucccaucaggggaggaaucggggacggcugaaaggcgagggcgccgaagcgagcagaguuccucccgcucugcuuggcugggggugaggggaauacccuuaccacugucgcgaaagcggagagccgucca <<<<<<....<<<<<<..<.......<<<<<<<<<.....((((((.....>>>>>>>>>......>..>>>>>>...<<<<<<<<<<<<.))))))>>>>>>>>>.>>><<.<<<<<<<<.....>>>>>>>>.>>.<<<<....>>>>....>>>>>>. ((((((..(.((((((..(.......(((((((((..(..[[[[[[....))))))))))......)..)))))))..((((((((((((.]]]]]]))))))))).)))((.(((.((((.....)))).))).)).((((....))))....)))))). Crystal Structure of the unbound lysine riboswitch; RNA (161-MER) 3deg A 76 10.9 RF00005 URS000011107D_562 19172743 0030533 0006412 562 gcggauuuancucagnngggagagcnccaganunaagaunuggagnucnugugnucgnuccacagaauucgcacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).((((.........)))).....(((((..]....)))))))))))).... Complex of elongating Escherichia coli 70S ribosome and EF4(LepA)-GMPPNP; A/L-tRNA 3deg B 77 10.9 RF00005 URS000041AF00_562 19172743 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Complex of elongating Escherichia coli 70S ribosome and EF4(LepA)-GMPPNP; P-tRNA 3dhs A 215 3.6 RF00011 URS000080DF78_1422 19095619 3.1.26.5 0004526 0008033 0030680 1422 guuaaucaugcucggguaaucgcugcggccgguuucggccguagaggaaaguccaugcucgcacggugcugagaugcccgugcgagaaacccaaaaggggcaccuucccgaaggaaaugaacggagggaaggacaggcggcgcaugcagccuguagauagaugauuaccgccggaguacgaagguacagaacauggcuuauagagcaugauuaac .<<<<<<<<<<<<.<<<<<<<.<<<<<<<<<....>>>>>>>>>.{...[[.(((((<<<<<<<<<.<<......>>>>>>>>>>>...<<<....>>>...<<<<<<<...<........>...>>>>>>><<<<<<..........>>>>>>........>>>>>>><<<..........>>>.}....)))))]]....>>>>>>>>>>>>. .((((((((((((((((((((.(((((((((....))))))))).{...[[.[[[[[(((((((((.((......)))))))))))...(((....)))...(((((((...(........)...)))))))((((((..........))))))........)))))))(((...(..)...))).}....]]]]]]]..).)))))))))))). Mapping metal-binding sites in the catalytic domain of bacterial RNase P RNA; RNase P RNA 3dig X 174 2.8 RF00168 URS000080E0C5_2336 18784651 0009085 2336 ggccgacggaggcgcgcccgagaugaguaggcugucccaucaggggaggaaucggggacggcugaaaggcgagggcgccgaagggugcagaguuccucccgcucugcaugccuggggguauggggaauacccauaccacugucacggaggucucuccguggagagccgucggun <<<<<<<<<....<<<<<<..<.......<<<<<<<<<.....((((((.....>>>>>>>>>......>..>>>>>>...<<<<<<<<<<<<.))))))>>>>>>>>>.>>><<.<<<<<<<<.....>>>>>>>>.>>.<<<<<<<<<..>>>>>>>>>....>>>>>>>>> (((((((((..(.((((((..(.......(((((((((..(..[[[[[[....))))))))))......)..)))))))..((((((((((((.]]]]]]))))))))).)))((.((((((((.....)))))))).)).((((((((....))))))))....))))))))) CRYSTAL STRUCTURE OF THE THERMOTOGA MARITIMA LYSINE RIBOSWITCH BOUND TO S-(2-aminoethyl)-L-cysteine; RNA (174-MER) 3dil A 174 1.9 RF00168 URS000080E0C5_2336 18784651 0009085 2336 ggccgacggaggcgcgcccgagaugaguaggcugucccaucaggggaggaaucggggacggcugaaaggcgagggcgccgaagggugcagaguuccucccgcucugcaugccuggggguauggggaauacccauaccacugucacggaggucucuccguggagagccgucggun <<<<<<<<<....<<<<<<..<.......<<<<<<<<<.....((((((.....>>>>>>>>>......>..>>>>>>...<<<<<<<<<<<<.))))))>>>>>>>>>.>>><<.<<<<<<<<.....>>>>>>>>.>>.<<<<<<<<<..>>>>>>>>>....>>>>>>>>> (((((((((..(.((((((..(.......(((((((((..(..[[[[[[....))))))))))......)..)))))))..((((((((((((.]]]]]]))))))))).)))((.((((((((.....)))))))).)).((((((((....))))))))....))))))))) Crystal structure of the Thermotoga maritima lysine riboswitch bound to lysine; RNA (174-MER) 3dim A 174 2.9 RF00168 URS000080E0C5_2336 18784651 0009085 2336 ggccgacggaggcgcgcccgagaugaguaggcugucccaucaggggaggaaucggggacggcugaaaggcgagggcgccgaagggugcagaguuccucccgcucugcaugccuggggguauggggaauacccauaccacugucacggaggucucuccguggagagccgucggun .<<<<<<<<....<<<<<<..<.......<<<<<<<<<.....((((((.....>>>>>>>>>......>..>>>>>>...<<<<<<<<<<<<.))))))>>>>>>>>>.>>><<.<<<<<<<<.....>>>>>>>>.>>.<<<<<<<<<..>>>>>>>>>....>>>>>>>>. (((((((((..(.((((((..(.......(((((((((..(..[[[[[[....))))))))))......)..)))))))..((((((((((((.]]]]]]))))))))).)))((.((((((((.....)))))))).)).((((((((....))))))))....))))))))) Crystallization of the Thermotoga maritima lysine riboswitch bound to lysine, Cs+ Soak; RNA (174-MER) 3dio X 174 2.4 RF00168 URS000080E0C5_2336 18784651 0009085 2336 ggccgacggaggcgcgcccgagaugaguaggcugucccaucaggggaggaaucggggacggcugaaaggcgagggcgccgaagggugcagaguuccucccgcucugcaugccuggggguauggggaauacccauaccacugucacggaggucucuccguggagagccgucggun <<<<<<<<<....<<<<<<..<.......<<<<<<<<<.....((((((.....>>>>>>>>>......>..>>>>>>...<<<<<<<<<<<<.))))))>>>>>>>>>.>>><<.<<<<<<<<.....>>>>>>>>.>>.<<<<<<<<<..>>>>>>>>>....>>>>>>>>> (((((((((..(.((((((..(.......(((((((((..(..[[[[[[....))))))))))......)..)))))))..((((((((((((.]]]]]]))))))))).)))((.((((((((.....)))))))).)).((((((((....))))))))....))))))))) Crystallization of the Thermotoga maritima lysine riboswitch bound to lysine, IRIDIUM HEXAMINE SOAK; RNA (174-MER) 3diq A 174 2.7 RF00168 URS000080E0C5_2336 18784651 0009085 2336 ggccgacggaggcgcgcccgagaugaguaggcugucccaucaggggaggaaucggggacggcugaaaggcgagggcgccgaagggugcagaguuccucccgcucugcaugccuggggguauggggaauacccauaccacugucacggaggucucuccguggagagccgucggun <<<<<<<<<....<<<<<<..<.......<<<<<<<<<.....((((((.....>>>>>>>>>......>..>>>>>>...<<<<<<<<<<<<.))))))>>>>>>>>>.>>><<.<<<<<<<<.....>>>>>>>>.>>.<<<<<<<<<..>>>>>>>>>....>>>>>>>>> (((((((((..(.((((((..(.......(((((((((..(..[[[[[[....))))))))))......)..)))))))..((((((((((((.]]]]]]))))))))).)))((.((((((((.....)))))))).)).((((((((....))))))))....))))))))) Crystallization of the Thermotoga maritima lysine riboswitch bound to homoarginine; RNA (174-MER) 3dir A 174 2.9 RF00168 URS000080E0C5_2336 18784651 0009085 2336 ngccgacggaggcgcgcccgagaugaguaggcugucccaucaggggaggaaucggggacggcugaaaggcgagggcgccgaagggugcagaguuccucccgcucugcaugccuggggguauggggaauacccauaccacugucacggaggucucuccguggagagccgucggun <<<<<<<<<....<<<<<<..<.......<<<<<<<<<.....((((((.....>>>>>>>>>......>..>>>>>>...<<<<<<<<<<<<.))))))>>>>>>>>>.>>><<.<<<<<<<<.....>>>>>>>>.>>.<<<<<<<<<..>>>>>>>>>....>>>>>>>>> (((((((((..(.((((((..(.......(((((((((..(..[[[[[[....))))))))))......)..)))))))..((((((((((((.]]]]]]))))))))).)))((.((((((((.....)))))))).)).((((((((....))))))))....))))))))) Crystallization of the Thermotoga maritima lysine riboswitch bound to N6-1-iminoethyl-L-Lysine; RNA (174-MER) 3dis A 174 3.1 RF00168 URS000080E0C5_2336 18784651 0009085 2336 ggccgacggaggcgcgcccgagaugaguaggcugucccaucaggggaggaaucggggacggcugaaaggcgagggcgccgaagggugcagaguuccucccgcucugcaugccuggggguauggggaauacccauaccacugucacggaggucucuccguggagagccgucggun <<<<<<<<<....<<<<<<..<.......<<<<<<<<<.....((((((.....>>>>>>>>>......>..>>>>>>...<<<<<<<<<<<<.))))))>>>>>>>>>.>>><<.<<<<<<<<.....>>>>>>>>.>>.<<<<<<<<<..>>>>>>>>>....>>>>>>>>> (((((((((..(.((((((..(.......(((((((((..(..[[[[[[....))))))))))......)..)))))))..((((((((((((.]]]]]]))))))))).)))((.((((((((.....)))))))).)).((((((((....))))))))....))))))))) Crystallization of the Thermotoga maritima lysine riboswitch in free form; RNA (174-MER) 3dix A 174 2.9 RF00168 URS000080E0C5_2336 18784651 0009085 2336 ggccgacggaggcgcgcccgagaugaguaggcugucccaucaggggaggaaucggggacggcugaaaggcgagggcgccgaagggugcagaguuccucccgcucugcaugccuggggguauggggaauacccauaccacugucacggaggucucuccguggagagccgucggun <<<<<<<<<....<<<<<<..<.......<<<<<<<<<.....((((((.....>>>>>>>>>......>..>>>>>>...<<<<<<<<<<<<.))))))>>>>>>>>>.>>><<.<<<<<<<<.....>>>>>>>>.>>.<<<<<<<<<..>>>>>>>>>....>>>>>>>>> (((((((((..(.((((((..(.......(((((((((..(..[[[[[[....))))))))))......)..)))))))..((((((((((((.]]]]]]))))))))).)))((.((((((((.....)))))))).)).((((((((....))))))))....))))))))) Crystallization of the Thermotoga maritima lysine riboswitch bound to lysine, K+ anomalous data; RNA (174-MER) 3diy A 174 2.71 RF00168 URS000080E0C5_2336 18784651 0009085 2336 ngccgacggaggcgcgcccgagaugaguaggcugucccaucaggggaggaaucggggacggcugaaaggcgagggcgccgaagggugcagaguuccucccgcucugcaugccuggggguauggggaauacccauaccacugucacggaggucucuccguggagagccgucggun .<<<<<<<<....<<<<<<..<.......<<<<<<<<<.....((((((.....>>>>>>>>>......>..>>>>>>...<<<<<<<<<<<<.))))))>>>>>>>>>.>>><<.<<<<<<<<.....>>>>>>>>.>>.<<<<<<<<<..>>>>>>>>>....>>>>>>>>. (((((((((..(.((((((..(.......(((((((((..(..[[[[[[....))))))))))......)..)))))))..((((((((((((.]]]]]]))))))))).)))((.((((((((.....)))))))).)).((((((((....))))))))....))))))))) Crystallization of the Thermotoga maritima lysine riboswitch bound to lysine, Mn2+ soak; RNA (174-MER) 3diz A 174 2.85 RF00168 URS000080E0C5_2336 18784651 0009085 2336 ggccgacggaggcgcgcccgagaugaguaggcugucccaucaggggaggaaucggggacggcugaaaggcgagggcgccgaagggugcagaguuccucccgcucugcaugccuggggguauggggaauacccauaccacugucacggaggucucuccguggagagccgucggun <<<<<<<<<....<<<<<<..<.......<<<<<<<<<.....((((((.....>>>>>>>>>......>..>>>>>>...<<<<<<<<<<<<.))))))>>>>>>>>>.>>><<.<<<<<<<<.....>>>>>>>>.>>.<<<<<<<<<..>>>>>>>>>....>>>>>>>>> (((((((((..(.((((((..(.......(((((((((..(..[[[[[[....))))))))))......)..)))))))..((((((((((((.]]]]]]))))))))).)))((.((((((((.....)))))))).)).((((((((....))))))))....))))))))) Crystallization of the Thermotoga maritima lysine riboswitch bound to lysine in the Absence of Mg2+; RNA (174-MER) 3dj0 A 174 2.5 RF00168 URS000080E0C5_2336 18784651 0009085 2336 ggccgacggaggcgcgcccgagaugaguaggcugucccaucaggggaggaaucggggacggcugaaaggcgagggcgccgaagggugcagaguuccucccgcucugcaugccuggggguauggggaauacccauaccacugucacggaggucucuccguggagagccgucggun <<<<<<<<<....<<<<<<..<.......<<<<<<<<<.....((((((.....>>>>>>>>>......>..>>>>>>...<<<<<<<<<<<<.))))))>>>>>>>>>.>>><<.<<<<<<<<.....>>>>>>>>.>>.<<<<<<<<<..>>>>>>>>>....>>>>>>>>> (((((((((..(.((((((..(.......(((((((((..(..[[[[[[....))))))))))......)..)))))))..((((((((((((.]]]]]]))))))))).)))((.((((((((.....)))))))).)).((((((((....))))))))....))))))))) Crystallization of the Thermotoga maritima lysine riboswitch bound to L-4-oxalysine; RNA (174-MER) 3dj2 A 174 2.5 RF00168 URS000080E0C5_2336 18784651 0009085 2336 ggccgacggaggcgcgcccgagaugaguaggcugucccaucaggggaggaaucggggacggcugaaaggcgagggcgccgaagggugcagaguuccucccgcucugcaugccuggggguauggggaauacccauaccacugucacggaggucucuccguggagagccgucggun <<<<<<<<<....<<<<<<..<.......<<<<<<<<<.....((((((.....>>>>>>>>>......>..>>>>>>...<<<<<<<<<<<<.))))))>>>>>>>>>.>>><<.<<<<<<<<.....>>>>>>>>.>>.<<<<<<<<<..>>>>>>>>>....>>>>>>>>> (((((((((..(.((((((..(.......(((((((((..(..[[[[[[....))))))))))......)..)))))))..((((((((((((.]]]]]]))))))))).)))((.((((((((.....)))))))).)).((((((((....))))))))....))))))))) Crystallization of the Thermotoga maritima lysine riboswitch bound to lysine, Tl+ Soak; RNA (174-MER) 3ds7 A 67 1.85 RF00167 URS000080E322_32630 19007790 0009113 32630 ggacauacaaucgcguggauauggcacgcaagaucccgccgggcaccguaaauguccgacuaugucc <<<<<<<...<.<<<<<.....<<>>>>>.>........<<<<<<>>.....>>>>>>..>>>>>>> ((((((((..(.(((((.....[[))))).)[.....)]((((((]].....))))))..))))))) Structure of an RNA-2'-deoxyguanosine complex; 67-MER 3ds7 B 67 1.85 RF00167 URS000080E322_32630 19007790 0009113 32630 ggacauacaaucgcguggauauggcacgcaagaucccgccgggcaccguaaauguccgacuaugucc <<<<<<<...<.<<<<<.....<<>>>>>.>........<<<<<<>>.....>>>>>>..>>>>>>> ((((((((..(.(((((.....[[))))).)[.....)]((((((]].....))))))..))))))) Structure of an RNA-2'-deoxyguanosine complex; 67-MER 3e5c A 53 2.25 RF01767 URS000080DEC9_32630 18806797 2.5.1.6 0004478 0006446 32630 nuucccgaaaggauggcggaaacgccagaugccuuguaaccgaaagggggaau <<<<<<..<<<<.<<<<<....>>>>>....>>>>....<<....>>>>>>>> ((((((..((((.(((((....)))))....))))....((....)))))))) Crystal Structure of the SMK box (SAM-III) Riboswitch with SAM; SMK box (SAM-III) Riboswitch 3e5e A 53 2.9 RF01767 URS000080DEC9_32630 18806797 2.5.1.6 0004478 0006446 32630 nuucccgaaaggauggcggaaacgccagaugccuuguaaccgaaagggggaau <<<<<<..<<<<.<<<<<....>>>>>....>>>>....<<....>>>>>>>> ((((((..((((.(((((....)))))....))))....((....)))))))) Crystal Structures of the SMK box (SAM-III) Riboswitch with SAH; SMK box (SAM-III) Riboswitch for RNA 3e5f A 53 2.7 RF01767 URS000080DEC9_32630 18806797 2.5.1.6 0004478 0006446 32630 nuucccgaaaggauggcggaaacgccagaugccuuguaaccgaaagggggaau <<<<<<..<<<<.<<<<<....>>>>>....>>>>....<<....>>>>>>>> ((((((..((((.(((((....)))))....))))....((....)))))))) Crystal Structures of the SMK box (SAM-III) Riboswitch with Se-SAM; SMK box (SAM-III) Riboswitch for RNA 3eog A 388 3.391 RF02001,RF01998 URS000080DD31_182710 18953333 0000373 182710 gugcccggcaugggugcagucuauagggugagagucccgaacugugaaggcagaaguaacaguuagccuaacgcaaggguguccguggcgacauggaaucugaaggaagcggacggcaaaccuucggucugaggaacacgaacuucauaugaggcuagguaucaauggaugaguuugcauaacaaaacaaaguccuuucugccaaaguugguacagaguaaaugaagcagauugaugaagggaaagacugcauucuuacccggggaggucuggaaacagaagucagcagaagucauaguacccuguucgcaggggaaggacggaacaaguauggcguucgcgccuaagcuugaaccgccguauaccgaacgguacguacgguggugug {..<<<<<...<<<<<<<<<<<...<<<.......>>>..(((((...<<<<<<<...)))))..<<<...<<<..<<<<.<<<<<<....>>>>>>>>>>.......>>>...>>>...(((((((((((...........(((((......[[[.....(((((<<<<..<<<<........>>>>...>>>>.>>>>>>>...))))).....]]]...))))))))))...))))))...>>>>>>>>>>>...}>>>>>....<<<<....>>>>...........<<.......<<.<......>>>......>>....<<<<<..<<<<....>>>>...>>>>>.<<<<<<<<<<<<<....>>>..>>>>>>>>>>... [<.((((({..(((((((((((...(((.......)))..(((((..A.[[[[[[...)))))..(((...(((..((((.((((((....))))))))))...>}..)))...)))...(((((((((((...........(((((......(((..(...((((((((..((((........))))...))))a]]]]]]....))))...)..)))...))))))))))...))))))...)))))))))))...])))))(...((((....))))...)...........(....(.(((....))))....).......(((((..((((....))))...))))).(((((((((((((....)))..))))))))))... Co-crystallization showing exon recognition by a group II intron; Group IIC intron 3eoh A 381 3.125 RF02001,RF01998 URS000080DD31_182710 18953333 0000373 182710 gugcccggcaugggugcagucuauagggugagagucccgaacugugaaggcagaaguaacaguuagccuaacgcaaggguguccguggcgacauggaaucugaaggaagcggacggcaaaccuucggucugaggaacacgaacuucauaugaggcuagguaucaauggaugaguuugcauaacaaaacaaaguccuuucugccaaaguugguagaguaaaugaagcagauugaugaagggaaagacugcauucuuacccggggaggucuggaaacagaagucagcagaagucauaguacccucaggggaaggacggaacaaguauggcguucgcgccuaagcuugaaccgccguauaccgaacgguacguacgguggugug {..<<<<<...<<<<<<<<<<<...<<<.......>>>..(((((...<<<<<<<...)))))..<<<...<<<..<<<<.<<<<<<....>>>>>>>>>>.......>>>...>>>...(((((((((((...........(((((......[[[.....(((((<<<<..<<<<........>>>>...>>>>.>>>>>>>...)))))...]]]...))))))))))...))))))...>>>>>>>>>>>...}>>>>>....<<<<....>>>>...........<<<......<<....>>.....>>>....<<<<<..<<<<....>>>>...>>>>>.<<<<<<<<<<<<<....>>>..>>>>>>>>>>... [<.((((({..(((((((((((...(((.......)))..(((((..A.[[[[[[...)))))..(((...(((..((((.((((((....))))))))))...>}.{)))...)))...(((((((((((...........(((((.....[(((......((((((((..((((.]......))))...))))a]]]]]]....))))....)))...))))))))))...))))))...))))))))))).}.])))))(...((((....))))...).......((..(....((.....))...).))....(((((..((((....))))...))))).(((((((((((((....)))..))))))))))... Refined group II intron structure; Group IIC intron 3ep2 Y 74 9.0 RF00005 URS000080DD6E_83333 19020518 0030533 0006412 83333 cggauuuagcucaguugggagagcgccagacugaagaucuggagguccuguguucgauccacagaauucgcacc ..<<<<((<<<...)......>>>.<<<<<.......>>>>>......<<<<.......>>>>>)>>>...... ...(.(....................((((.......)))).......(((.........)))..).)...... Model of Phe-tRNA(Phe) in the ribosomal pre-accommodated state revealed by cryo-EM; tRNA 3eph E 69 2.95 RF00005 URS000080DDE1_4932 18852462 0030533 0006412 4932 cucguauggcgcagugguagcgcagcagauugcaaaucuguugguccuuaguucgauccugagugcgag <<<<<...<<<<.......>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>.>>>>> ((((.(..((((....[..))))..((((.......))))......((.((..]....)).))).)))) Crystallographic snapshots of eukaryotic dimethylallyltransferase acting on tRNA: Insight into tRNA recognition and reaction mechanism; tRNA 3eph F 69 2.95 RF00005 URS000080DDE1_4932 18852462 0030533 0006412 4932 cucguauggcgcagugguagcgcagcagauugcaaaucuguugguccuuaguucgauccugagugcgag <<<<<...<<<<.......>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>.>>>>> .(((((..((((.......))))..((((.......))))......(((((.......)))))))))). Crystallographic snapshots of eukaryotic dimethylallyltransferase acting on tRNA: Insight into tRNA recognition and reaction mechanism; tRNA 3epj E 69 3.1 RF00005 URS000080DDE1_4932 18852462 0030533 0006412 4932 cucguauggcgcagugguagcgcagcagauugcaaaucuguugguccuuaguucgauccugagugcgag <<<<<...<<<<.......>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>.>>>>> ((((.(..((((....[..))))..((((.......))))......((.((..]....)).))).)))) Crystallographic snapshots of eukaryotic dimethylallyltransferase acting on tRNA: Insight into tRNA recognition and reaction mechanism; tRNA 3epj F 69 3.1 RF00005 URS000080DDE1_4932 18852462 0030533 0006412 4932 cucguauggcgcagugguagcgcagcagauugcaaaucuguugguccuuaguucgauccugagugcgag <<<<<<..<<<<.......>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>> .(((((..((((.......))))((((((.......))))))....(((((.......)))))))))). Crystallographic snapshots of eukaryotic dimethylallyltransferase acting on tRNA: Insight into tRNA recognition and reaction mechanism; tRNA 3epk E 69 3.2 RF00005 URS000080DDE1_4932 18852462 0030533 0006412 4932 cucguauggcgcagugguagcgcagcagauugcaaaucuguugguccuuaguucgauccugagugcgag <<<<<...<<<<.......>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>.>>>>> ((((.(..((((....[..)))).(((((.......))))).....((.((..]....)).))).)))) Crystallographic snapshots of eukaryotic dimethylallyltransferase acting on tRNA: Insight into tRNA recognition and reaction mechanism; tRNA 3epk F 69 3.2 RF00005 URS000080DDE1_4932 18852462 0030533 0006412 4932 cucguauggcgcagugguagcgcagcagauugcaaaucuguugguccuuaguucgauccugagugcgag .<<<<...<<<<.......>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>.>>>>. .(((.(..((((....[..))))..((((.......))))......(((((..]....)))))).))). Crystallographic snapshots of eukaryotic dimethylallyltransferase acting on tRNA: Insight into tRNA recognition and reaction mechanism; tRNA 3epl E 69 3.6 RF00005 URS000080DDE1_4932 18852462 0030533 0006412 4932 cucguauggcgcagugguagcgcagcagauugcanaucuguugguccuuaguucgauccugagugcgag .<<<<...<<<<.......>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>.>>>>. (....(..((((.......)))).(((((.......))))).....((.((.......)).)))....) Crystallographic snapshots of eukaryotic dimethylallyltransferase acting on tRNA: Insight into tRNA recognition and reaction mechanism; tRNA 3epl F 69 3.6 RF00005 URS000080DDE1_4932 18852462 0030533 0006412 4932 cucguauggcgcagugguagcgcagcagauugcaaaucuguugguccuuaguucgauccugagugcgag <<<<<<..<<<<.......>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>> .(((((..((((....[..))))..((((.......))))......(((((..]....)))))))))). Crystallographic snapshots of eukaryotic dimethylallyltransferase acting on tRNA: Insight into tRNA recognition and reaction mechanism; tRNA 3eq3 Y 74 9.0 RF00005 URS000080DD6E_83333 19020518 0030533 0006412 83333 cggauuuagcucaguugggagagcgccagacugaagaucuggagguccuguguucgauccacagaauucgcacc ..<<<<((<<<...)......>>>.<<<<<.......>>>>>......<<<<.......>>>>>)>>>...... ...((...(((..........)))..((((.......)))).......(((.........)))..))....... Model of tRNA(Trp)-EF-Tu in the ribosomal pre-accommodated state revealed by cryo-EM; tRNA 3eq4 Y 85 12.0 RF00005 URS000080DE10_83333 19020518 0030533 0006412 83333 cggauuuagcucaguugggagagcgccagacugaagaucuggaccuguguucgauccacagaauucgcacccucccguagggguu ..<<<.<(<<<...)......>>>.<<<<<.......>>>>>..<<<<<.......>>>>>>>>>......(.<<....).>>.. ...(.(..(((..........)))..((((.......))))...((((.........)))).).)........((......)).. Model of tRNA(Leu)-EF-Tu in the ribosomal pre-accommodated state revealed by cryo-EM; tRNA 3fo4 A 63 1.9 RF00167 URS000080E134_1423 19523903 0009113 1423 acauauaaucgcguggauauggcacgcaaguuucuaccgggcaccguaaauguccgauuaugu <<<<<...<.<<<<<.....<<>>>>>.>........<<<<<<>>.....>>>>>>..>>>>> ((((((..(.(((((.....[[))))).)[.....)]((((((]].....))))))..))))) Crystal structure of guanine riboswitch C74U mutant bound to 6-chloroguanine; Guanine riboswitch C74U mutant 3fo6 A 67 1.9 RF00167 URS000080DD54_1423 19523903 0009113 1423 ggacauauaaucgcguggauauggcacgcaaguuucuaccgggcaccguaaauguccgacuaugucc <<<<<<<...<.<<<<<.....<<>>>>>.>........<<<<<<>>.....>>>>>>..>>>>>>> ((((((((..(.(((((.....[[))))).)[.....)]((((((]].....))))))..))))))) Crystal structure of guanine riboswitch bound to 6-O-methylguanine; Guanine riboswitch 3foz C 74 2.5 RF00005 URS000080DF41_562 19158097 0030533 0006412 562 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgagucugggcac <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.. (((((((..((((.....[..)))).(((((.......))))).....(((((..]....)))))))))))).. Structure of E. coli Isopentenyl-tRNA transferase in complex with E. coli tRNA(Phe); tRNA(Phe) 3foz D 69 2.5 RF00005 URS000080E12B_562 19158097 0030533 0006412 562 cggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggc <<<<..<<<<........>>>><<<<<<<.....>>>>>>.>...<<<<<.......>>>>>>>>>... ((((..((((.....[..)))).(((((.......))))).....(.(((..]....))).)))))... Structure of E. coli Isopentenyl-tRNA transferase in complex with E. coli tRNA(Phe); tRNA(Phe) 3fu2 A 32 2.85 RF00522 URS000080E020_32630 19234468 0008616 32630 agagguucuagccacccucuauaaaaaacuaa <<<<<...(((....>>>>>........))). (((((...[[[....)))))........]]]. Cocrystal structure of a class-I preQ1 riboswitch; PreQ1 riboswitch 3fu2 B 33 2.85 RF00522 URS000080E020_32630 19234468 0008616 32630 agagguucuagcacacccucuauaaaaaacuaa <<<<<...(((.....>>>>>........))). (((((...[[[.....)))))........]]]. Cocrystal structure of a class-I preQ1 riboswitch; PreQ1 riboswitch 3fu2 C 32 2.85 RF00522 URS000080E020_32630 19234468 0008616 32630 agagguucuagccacccucuauaaaaaacuaa <<<<<...(((....>>>>>........))). (((((...[[[....)))))........]]]. Cocrystal structure of a class-I preQ1 riboswitch; PreQ1 riboswitch 3g4m A 67 2.4 RF00167 URS000080DDA1_1423 19523903 0009113 1423 ggacauauaaucgcguggauauggcacgcaaguuucuaccgggcaccguaaauguccgacuaugucc <<<<<<<...<.<<<<<.....<<>>>>>.>........<<<<<<>>.....>>>>>>..>>>>>>> .(((((((..(.(((((.....[[))))).)[.....)]((((((]].....))))))..)))))). Crystal structure of guanine riboswitch bound to 2-aminopurine; Guanine riboswitch 3g78 A 389 2.8 RF02001,RF01998 URS000080DD31_182710 20823550,18388288,18953333 0000373 182710 ugugcccggcaugggugcagucuauagggugagagucccgaacugugaaggcagaaguaacaguuagccuaacgcaaggguguccguggcgacauggaaucugaaggaagcggacggcaaaccuucggucugaggaacacgaacuucauaugaggcuagguaucaauggaugaguuugcauaacaaaacaaaguccuuucugccaaaguugguacagaguaaaugaagcagauugaugaagggaaagacugcauucuuacccggggaggucuggaaacagaagucagcagaagucauaguacccuguucgcaggggaaggacggaacaaguauggcguucgcgccuaagcuugaaccgccguauaccgaacgguacguacgguggugug ....<<<<<...<<<<<<<<<<<...<<<.......>>>..<<<<<...(((((((...>>>>>..<<<...<<<..<<<<.<<<<<<....>>>>>>>>>>.......>>>...>>>...<<<<<<<<<<<...........<<<<<......<<<..<<<<<<<<<<<<..<<<<........>>>>...>>>>.)))))))...>>>>>>>>..>>>...>>>>>>>>>>...>>>>>>...>>>>>>>>>>>....>>>>>....<<<<....>>>>...........<<<......<<<<......>>>>....>>>....<<<<<..<<<<....>>>>...>>>>>.<<<<<<<<<<<<<....>>>..>>>>>>>>>>... .[<.((((({..(((((((((((...(((.......)))..(((((...[[[[[[[...)))))..(((...(((..((((.((((((....))))))))))...>}..)))...)))...(((((((((((.(.....)...(((((.....[(((..(((.((((((((..((((.]......))))...)))).]]]]]]]...)))).)))..)))...))))))))))...))))))...)))))))))))...])))))(...((((....))))...).......(((.(....(((........)))...))))....(((((.(((((....))))..)))))).(((((((((((((....)))..))))))))))... Insight into group II intron catalysis from revised crystal structure; Group II intron 3g8s P 141 3.1 RF00234 URS000080E011_1392 19228039 0003824 0010468 1392 ngcaccauugcacuccggugccaguugacgaggugggguuuaucgagauuucggcggaugacucccgguuguucaucacaaccgcaagcuuuuacuuaaaucauuaaggugacuuaguggacaaaggugaaagugugauga .<<<<<..........>>>>>.......(((...<<<<<<..)))..............>>>>>><<<<<<.((((((>>>>>>...<<<<<<<<<....<<<<<<<<....>>>>>>>.>....>>>>>>>>>.)))))) ((((((..........))))))......[[[...((((((..]]]..............))))))((((((.....[[))))))....((((((((.....(((((((....)))))))......))))))))..]].... Crystal structure of the pre-cleaved Bacillus anthracis glmS ribozyme; GLMS RIBOZYME 3g8s Q 141 3.1 RF00234 URS000080E011_1392 19228039 0003824 0010468 1392 ngcaccauugcacuccggugccaguugacgaggugggguuuaucgagauuucggcggaugacucccgguuguucaucacaaccgcaagcuuuuacuuaaaucauuaaggugacuuaguggacaaaggugaaagugugauga <<<<<<..........>>>>>>......(((...<<<<<<..)))..............>>>>>><<<<<<...((((>>>>>>...<<<<<<<<<....<<<<<<<<....>>>>>>>.>....>>>>>>>>>.)))).. ((((((..........))))))......[[[...((((((..]]]..............))))))((((((....[[[))))))...(((((((((.....(((((((....)))))))......))))))))).]]]... Crystal structure of the pre-cleaved Bacillus anthracis glmS ribozyme; GLMS RIBOZYME 3g8s R 141 3.1 RF00234 URS000080E011_1392 19228039 0003824 0010468 1392 ngcaccauugcacuccggugccaguugacgaggugggguuuaucgagauuucggcggaugacucccgguuguucaucacaaccgcaagcuuuuacuuaaaucauuaaggugacuuaguggacaaaggugaaagugugauga <<<<<<..........>>>>>>......(((...<<<<<<..)))..............>>>>>><<<<<<...((((>>>>>>...<<<<<<<<<....<<<<<<<<....>>>>>>>.>....>>>>>>>>>.)))).. ((((((..........))))))......[[[...((((((..]]]..............))))))((((((....[[[))))))...(((((((((.....(((((((....)))))))......))))))))).]]]... Crystal structure of the pre-cleaved Bacillus anthracis glmS ribozyme; GLMS RIBOZYME 3g8s S 141 3.1 RF00234 URS000080E011_1392 19228039 0003824 0010468 1392 ngcaccauugcacuccggugccaguugacgaggugggguuuaucgagauuucggcggaugacucccgguuguucaucacaaccgcaagcuuuuacuuaaaucauuaaggugacuuaguggacaaaggugaaagugugauga <<<<<<..........>>>>>>......(((...<<<<<<..)))..............>>>>>><<<<<<.((((((>>>>>>...<<<<.<<<<....<<<<<<<<....>>>>>>>.>....>>>>.>>>>.)))))) ((((((..........))))))......[[[...((((((..]]]..............))))))((((((..[[[[[))))))...(((...(((.....(((((((....)))))))......)))...))).]]]]]. Crystal structure of the pre-cleaved Bacillus anthracis glmS ribozyme; GLMS RIBOZYME 3g8t P 141 3.0 RF00234 URS000080E372_32630 19228039 0003824 0010468 32630 ngcaccauugcacuccggugccaguugacgagaugggguuuaucgagauuucggcggaugacucccgguuguucaucacaaccgcaagcuuuuacuuaaaucauuaaggugacuuaguggacaaaggugaaagugugauga <<<<<<..........>>>>>>......(((...<<<<<<..)))..............>>>>>><<<<<<..(((((>>>>>>...<<<<<<<<<<...<<<<<<<<....>>>>>>>.>...>>>>>>>>>>.))))). ((((((..........))))))......[[[...((((((..]]]..............))))))((((((..[[[[[))))))...(((((((((.....(((((((....)))))))......))))))))).]]]]]. Crystal structure of the G33A mutant Bacillus anthracis glmS ribozyme bound to GlcN6P; glmS glucosamine-6-phosphate activated ribozyme 3g8t Q 141 3.0 RF00234 URS000080E372_32630 19228039 0003824 0010468 32630 ngcaccauugcacuccggugccaguugacgagaugggguuuaucgagauuucggcggaugacucccgguuguucaucacaaccgcaagcuuuuacuuaaaucauuaaggugacuuaguggacaaaggugaaagugugauga <<<<<<..........>>>>>>......(((...<<<<<<..)))..............>>>>>><<<<<<.....((>>>>>>...<<<<<<<<<....<<<<<<<<....>>>>>>>.>....>>>>>>>>>.)).... ((((((..........))))))......[[[...((((((..]]]..............))))))((((((......[))))))...(((((((((.....(.(((((....))))).)......))))))))).]..... Crystal structure of the G33A mutant Bacillus anthracis glmS ribozyme bound to GlcN6P; glmS glucosamine-6-phosphate activated ribozyme 3g8t R 141 3.0 RF00234 URS000080E372_32630 19228039 0003824 0010468 32630 ngcaccauugcacuccggugccaguugacgagaugggguuuaucgagauuucggcggaugacucccgguuguucaucacaaccgcaagcuuuuacuuaaaucauuaaggugacuuaguggacaaaggugaaagugugauga <<<<<<..........>>>>>>......(((...<<<<<<..)))..............>>>>>><<<<<<..(((((>>>>>>...<<<<<<<<<<...<<<<<<<<....>>>>>>>.>...>>>>>>>>>>.))))). ((((((..........))))))......[[[...((((((..]]]..............))))))((((((...[[[[))))))...(((((((((.....(((((((....)))))))......))))))))).]]]].. Crystal structure of the G33A mutant Bacillus anthracis glmS ribozyme bound to GlcN6P; glmS glucosamine-6-phosphate activated ribozyme 3g8t S 141 3.0 RF00234 URS000080E372_32630 19228039 0003824 0010468 32630 ngcaccauugcacuccggugccaguugacgagaugggguuuaucgagauuucggcggaugacucccgguuguucaucacaaccgcaagcuuuuacuuaaaucauuaaggugacuuaguggacaaaggugaaagugugauga <<<<<<..........>>>>>>......(((...<<<<<<..)))..............>>>>>><<<<<<.((((((>>>>>>...<<<<<<<<<....<<<<<<<<....>>>>>>>.>....>>>>>>>>>.)))))) ((((((..........))))))......[[[...((((((..]]]..............))))))((((((.[[[[[[))))))...((((((((......(....(.......)...).......)))))))).]]]]]] Crystal structure of the G33A mutant Bacillus anthracis glmS ribozyme bound to GlcN6P; glmS glucosamine-6-phosphate activated ribozyme 3g96 P 141 3.01 RF00234 URS000080E011_32630 19228039 0003824 0010468 32630 ngcaccauugcacuccggugccaguugacgaggugggguuuaucgagauuucggcggaugacucccgguuguucaucacaaccgcaagcuuuuacuuaaaucauuaaggugacuuaguggacaaaggugaaagugugauga <<<<<<..........>>>>>>......(((...<<<<<<..)))..............>>>>>><<<<<<.((((((>>>>>>...<<<<<<<<<....<<<<<<<<....>>>>>>>.>....>>>>>>>>>.)))))) ((((((..........))))))......[[[...((((((..]]]..............))))))((((((.[...[[))))))...(((((((((.....(((((((....)))))))......))))))))).]]...] Crystal structure of the Bacillus anthracis glmS ribozyme bound to MaN6P; GLMS RIBOZYME 3g96 Q 141 3.01 RF00234 URS000080E011_32630 19228039 0003824 0010468 32630 ngcaccauugcacuccggugccaguugacgaggugggguuuaucgagauuucggcggaugacucccgguuguucaucacaaccgcaagcuuuuacuuaaaucauuaaggugacuuaguggacaaaggugaaagugugauga <<<<<<..........>>>>>>......(((...<<<<<<..)))..............>>>>>><<<<<<.((((((>>>>>>...<<<<<<<<<....<<<<<<<<....>>>>>>>.>....>>>>>>>>>.)))))) ((((((..........))))))......[[[...((((((..]]]..............))))))((((((..[[[[[))))))...(((((((((.....(((((((....)))))))......))))))))).]]]]]. Crystal structure of the Bacillus anthracis glmS ribozyme bound to MaN6P; GLMS RIBOZYME 3g96 R 141 3.01 RF00234 URS000080E011_32630 19228039 0003824 0010468 32630 ngcaccauugcacuccggugccaguugacgaggugggguuuaucgagauuucggcggaugacucccgguuguucaucacaaccgcaagcuuuuacuuaaaucauuaaggugacuuaguggacaaaggugaaagugugauga <<<<<<..........>>>>>>......(((...<<<<<<..)))..............>>>>>><<<<<<.((((((>>>>>>...<<<<<<<<<....<<<<<<<<....>>>>>>>.>....>>>>>>>>>.)))))) ((((((..........))))))......[[[...((((((..]]]..............))))))((((((..[[[[[))))))...(((((((((.....(((((((....)))))))......))))))))).]]]]]. Crystal structure of the Bacillus anthracis glmS ribozyme bound to MaN6P; GLMS RIBOZYME 3g96 S 141 3.01 RF00234 URS000080E011_32630 19228039 0003824 0010468 32630 ngcaccauugcacuccggugccaguugacgaggugggguuuaucgagauuucggcggaugacucccgguuguucaucacaaccgcaagcuuuuacuuaaaucauuaaggugacuuaguggacaaaggugaaagugugauga <<<<<<..........>>>>>>......(((...<<<<<<..)))..............>>>>>><<<<<<.(((((.>>>>>>...<<<<<<<<<....<<<<<<<<....>>>>>>>.>....>>>>>>>>>..))))) ((((((..........))))))......[[[...((((((..]]]..............))))))((((((..[[[[[))))))...((.(((((......((.((((....)))).)).......))))).)).]]]]]. Crystal structure of the Bacillus anthracis glmS ribozyme bound to MaN6P; GLMS RIBOZYME 3g9c P 140 2.9 RF00234 URS000080E011_32630 19228039 0003824 0010468 32630 ngcaccauugcacuccggugccaguugacgaggugggguuuaucgagauuucggcggaugacucccgguuguucaucacaaccgcaagcuuuuacuuaaaucauuaaggugacuuaguggacaaaggugaaagugugaug <<<<<<..........>>>>>>......(((...<<<<<<..)))..............>>>>>><<<<<<...((((>>>>>>...<<<<<<<<<....<<<<<<<<....>>>>>>>.>....>>>>>>>>>.)))). ((((((..........))))))......[[[...((((((..]]]..............))))))((((((...[[[[))))))....(...((((.....(((((((....)))))))......))))...)..]]]]. Crystal structure of the product Bacillus anthracis glmS ribozyme; GLMS RIBOZYME 3g9c Q 141 2.9 RF00234 URS000080E011_32630 19228039 0003824 0010468 32630 ngcaccauugcacuccggugccaguugacgaggugggguuuaucgagauuucggcggaugacucccgguuguucaucacaaccgcaagcuuuuacuuaaaucauuaaggugacuuaguggacaaaggugaaagugugauga <<<<<<..........>>>>>>......(((...<<<<<<..)))..............>>>>>><<<<<<.(((((.>>>>>>...<<<<<<<<<....<<<<<<<<....>>>>>>>>.....>>>>>>>>>..))))) ((((((..........))))))......[[[...((((((..]]]..............))))))((((((.[[[[[[))))))...(((((((((.....(((((((....)))))))......))))))))).]]]]]] Crystal structure of the product Bacillus anthracis glmS ribozyme; GLMS RIBOZYME 3g9c R 141 2.9 RF00234 URS000080E011_32630 19228039 0003824 0010468 32630 ngcaccauugcacuccggugccaguugacgaggugggguuuaucgagauuucggcggaugacucccgguuguucaucacaaccgcaagcuuuuacuuaaaucauuaaggugacuuaguggacaaaggugaaagugugauga <<<<<<..........>>>>>>......(((...<<<<<<..)))..............>>>>>><<<<<<.(((((.>>>>>>...<<<<<.<<<....<<<<<<<<....>>>>>>>.>....>>>>.>>>>..))))) ((((((..........))))))......[[[...((((((..]]]..............))))))((((((.[[[[[[)))))).....(((...(.....(((((((....)))))))......)..)))....]]]]]] Crystal structure of the product Bacillus anthracis glmS ribozyme; GLMS RIBOZYME 3g9c S 140 2.9 RF00234 URS000080E011_32630 19228039 0003824 0010468 32630 ngcaccauugcacuccggugccaguugacgaggugggguuuaucgagauuucggcggaugacucccgguuguucaucacaaccgcaagcuuuuacuuaaaucauuaaggugacuuaguggacaaaggugaaagugugaug <<<<<<..........>>>>>>......(((...<<<<<<..)))..............>>>>>><<<<<<...((((>>>>>>...<<<<<<<<<....<<<<<<<<....>>>>>>>>.....>>>>>>>>>.)))). ((((((..........))))))......[[[...((((((..]]]..............))))))((((((...[[[[))))))...(((((((((.....(((((((....)))))))......))))))))).]]]]. Crystal structure of the product Bacillus anthracis glmS ribozyme; GLMS RIBOZYME 3gao A 67 1.9 RF00167 URS000080DDA1_1423 19523903 0009113 1423 ggacauauaaucgcguggauauggcacgcaaguuucuaccgggcaccguaaauguccgacuaugucc <<<<<<<...<.<<<<<.....<<>>>>>.><......><<<<<<>>.....>>>>>>..>>>>>>> ((((((((..(.(((((.....[[))))).)[.....)]((((((]].....))))))..))))))) Crystal structure of the guanine riboswitch bound to xanthine.; Guanine riboswitch 3ger A 67 1.7 RF00167 URS000080DDA1_1423 19523903 0009113 1423 ggacauauaaucgcguggauauggcacgcaaguuucuaccgggcaccguaaauguccgacuaugucc <<<<<<<...<.<<<<<.....<<>>>>>.>........<<<<<<>>.....>>>>>>..>>>>>>> ((((((((..(.(((((.....[[))))).)[.....)]((((((]].....))))))..))))))) Guanine riboswitch bound to 6-chloroguanine; Guanine riboswitch 3ges A 67 2.15 RF00167 URS000080DFC3_1423 19523903 0009113 1423 ggacauauaaucgcguggauauggcacgcaaguuucuaccgggcaccguaaauguccgauuaugucc <<<<<<<...<.<<<<<.....<<>>>>>.>........<<<<<<>>.....>>>>>>..>>>>>>> ((((((((..(.(((((.....[[))))).)[.....)]((((((]].....))))))..))))))) Crystal structure of the guanine riboswitch C74U mutant bound to 6-O-methylguanine; Guanine riboswitch 3gog A 65 2.1 RF00167 URS000080DDBB_1423 19523903 0009113 1423 gacauguaaucgcguggauauggcacgcaaguuucuaccgggcaccguaaauguccgaccauguc <<<<<<...<.<<<<<.....<<>>>>>.>........<<<<<<>>.....>>>>>>..>>>>>> (((((((..(.(((((.....[[))))).)[.....)]((((((]].....))))))..)))))) Guanine riboswitch A21G,U75C mutant bound to 6-chloroguanine; Guanine riboswitch 3got A 67 1.95 RF00167 URS000080DFC3_1423 19523903 0009113 1423 ggacauauaaucgcguggauauggcacgcaaguuucuaccgggcaccguaaauguccgauuaugucc <<<<<<<...<.<<<<<.....<<>>>>>.>........<<<<<<>>.....>>>>>>..>>>>>>> .(((((((..(.(((((.....[[))))).)[.....)]((((((]].....))))))..)))))). Guanine riboswitch C74U mutant bound to 2-fluoroadenine.; Guanine riboswitch 3gx2 A 94 2.9 RF00162 URS000080E047_119072 20006621 0010468 119072 ggcuuaucaagagagguggagggacuggcccgacgaaacccggcaaccagaaauggugccaauuccugcagcggaaacguugaaagaugagccg <<<<<<<<......<<<...<<<...((>>>......>>>.<<<<.<<<....>>>>>>>....))..<<<<<....>>>>>...>>>>>>>>. ((((((((......(((...(((.[.[[)))......))).(((..(((....))).)))...(]].](((((....)))))..))))))))). TteSAM-I riboswitch variant A94GU34C bound to sinefungin; RNA (94-MER) 3gx3 A 94 2.7 RF00162 URS000080E047_119072 20006621 0010468 119072 ggcuuaucaagagagguggagggacuggcccgacgaaacccggcaaccagaaauggugccaauuccugcagcggaaacguugaaagaugagccg <<<<<<<<......<<<...<<<...((>>>......>>>.<<<<.<<<....>>>>>>>....))..<<<<<....>>>>>...>>>>>>>>. ((((((((....(.(((...(((.[.[[)))......))))(((..(((....))).)))...(]].](((((....)))))..))))))))). Crystal structure of the T. tengcongensis SAM-I riboswitch variant U34C/A94G bound with SAH; RNA (94-MER) 3gx5 A 94 2.402 RF00162 URS000080E047_119072 20006621 0010468 119072 ggcuuaucaagagagguggagggacuggcccgacgaaacccggcaaccagaaauggugccaauuccugcagcggaaacguugaaagaugagccg <<<<<<<<......<<<...<<<...((>>>......>>>.<<<<.<<<....>>>>>>>....))..<<<<<....>>>>>...>>>>>>>>. ((((((((....(.(((...(((.[.[[)))......))))(((..(((....))).)))...(]].](((((....)))))..))))))))). Crystal structure of T. tencongensis SAM-I riboswitch variant A94G/U34 bound with SAM; RNA (94-MER) 3gx6 A 94 2.8 RF00162 URS000080E047_119072 20006621 0010468 119072 ggcuuaucaagagagguggagggacuggcccgacgaaacccggcaaccagaaauggugccaauuccugcagcggaaacguugaaagaugagccg <<<<<<<<......<<<...<<<...((>>>......>>>.<<<<.<<<....>>>>>>>....))..<<<<<....>>>>>...>>>>>>>>. ((((((((......(((...(((.[.[[)))......))).(((..(((....))).)))...(]].](((((....)))))..))))))))). Crystal structure of the T. tengcongensis SAM-I riboswitch variant U34C/A94G bound with SAM in manganese chloride; RNA (94-MER) 3gx7 A 94 2.95 RF00162 URS000080E094_119072 20006621 0010468 119072 ggcuucgcaagagagguggagggacuggcccgacgaaacccggcaaccagaaauggugccaauuccugcagcggaaacguugaaagcggagccg <<<<<<<<......<<<...<<<...((>>>......>>>.<<<<.<<<....>>>>>>>....))..<<<<<....>>>>>...>>>>>>>>. ((((.(((....(.(((...(((.[.[[)))......))))(((..(((....))).)))...(]].](((((....)))))..)))).)))). Crystal structure of the T. tengcongensis SAM-I riboswitch variant U34C/A94G mutant A6C/U7G/A87C/U88G bound with SAM; RNA (94-MER) 3hjw D 58 2.35 RF02796 URS000080DEB8_32630 19478803 0006396 32630 gggccacggaaaccgcgcgcggugaucaaugagccgcguucgcucccguggcccacaa <<<<<<<<<.......<<<<<<<.........>>>>>>>......>>>>>>>>>.... (((((((((.......(((((((.........)))))))......))))))))).... Structure of a functional ribonucleoprotein pseudouridine synthase bound to a substrate RNA; RNA (58-MER) 3hl2 E 82 2.81 RF01852,RF00005 URS000014E598_9606 19608919 0030533 0006412 9606 gcccggaugauccucaguggucuggggugcaggccuguagcugucuagcgacagagugguucaauuccaccuuucgggcgcc <<<<<<<....<<<<<<....>>>>>>.<<<<..>>>>..<<<<<....>>>>>.<<<<.......>>>>..>>>>>>>... (((((((.(..((((((..[.))))))(.(((()))).).(((((....))))).((((..]....))))).)))))))... The crystal structure of the human SepSecS-tRNASec complex; tRNASec 3igi A 389 3.125 RF02001,RF01998 URS000080DD31_182710 19952115 0000373 182710 ugugcccggcaugggugcagucuauagggugagagucccgaacugugaaggcagaaguaacaguuagccuaacgcaaggguguccguggcgacauggaaucugaaggaagcggacggcaaaccuucggucugaggaacacgaacuucauaugaggcuagguaucaauggaugaguuugcauaacaaaacaaaguccuuucugccaaaguugguacagaguaaaugaagcagauugaugaagggaaagacugcauucuuacccggggaggucuggaaacagaagucagcagaagucauaguacccuguucgcaggggaaggacggaacaaguauggcguucgcgccuaagcuugaaccgccguauaccgaacgguacguacgguggugug ....<<<<<...<<<<<<<<<<<...<<<.......>>>..(((((...<<<<<<<...)))))..<<<...<<<..<<<<.<<<<<<....>>>>>>>>>>.......>>>...>>>...(((((([[[[[...........[[[[[......[[[....((((((<<<<..<<<<........>>>>...>>>>.>>>>>>>...))))))....]]]...]]]]]]]]]]...))))))...>>>>>>>>>>>....>>>>>....<<<<....>>>>...........<<<......<<<<......>>>>....>>>....<<<<<..<<<<....>>>>...>>>>>.<<<<<<<<<<<<<....>>>..>>>>>>>>>>... .[<.((((({..(((((((((((...(((.......)))..(((((...[[[[[[[...)))))..(((...(((..((((.((((((....))))))))))...>}..)))...)))...(((((((((((.(.....)...(((((.....[(((....(.((((((((..((((.]......))))...)))).]]]]]]]...)))).)....)))...))))))))))...))))))...)))))))))))...])))))(...((((....))))...).......(((.(....(((........)))...))))....(((((.(((((....))))..)))))).(((((((((((((....)))..))))))))))... Tertiary Architecture of the Oceanobacillus Iheyensis Group II Intron; Group IIC intron 3iin B 197 4.18 RF00028 URS000080E37C_32630 20145044 0000372 32630 ngccgugugccuugcgccgggaaaccacgcaagggauggugucaaauucggcgaaaccuaagcgcccgcccgggcguauggcaacgccgagccaagcuucgcagccauugcacuccggcugcgaugaagguguagagacuagacggcacccaccuaaggcaaacgcuauggugaaggcauaguccagggaguggcgn .........<<<<<<<..<<....>>.>>>>>>>...<<<<<<....<<<<<<...<<...<<<<<......>>>>>..>>...>>>>>><<<.....<<<<<<<<..........>>>>>>>>....>>>.....(((((...>>>>>><<<<...<<<....>>>..>>>>......)))))............. .........(((((((..((....)).)))))))...((((((....((((((...((...((((((....))))))..))...))))))(((...(.((((.(((..........))).)))).)..)))...[.[[[[[...))))))((((...(((....)))..))))......]]]]]]............ Plasticity of the kink turn structural motif; Group I intron 3iqn A 94 2.7 RF00162 URS000080E279_32630 20637415 0010468 32630 ggcuuaucaagagagguggagggacuggcccgaugaaacccggcagccagaaauggugccaauuccugcagcggaaacguugaaagaugagccg <<<<<<<<......<<<...<<<...((>>>......>>>.<<<<.<<<....>>>>>>>....))..<<<<<....>>>>>...>>>>>>>>. ((((((((....(.(((...(((.[.[[)))......))))(((..(((....))).)))...(]].]((.((....)).))..))))))))). Free-state structural transitions of the SAM-I riboswitch; SAM-I riboswitch 3iqp A 94 2.9 RF00162 URS000080DF1C_119072 20637415 0010468 119072 ggcuuaucaagagagguggagggacuggcccgaugaaacccggcaaccagaaauggugccaauuccugcagcggaaacguugaaagaugagccg <<<<<<<<......<<<...<<<...((>>>......>>>.<<<.<<<<....>>>>>>>....))..<<<<<....>>>>>...>>>>>>>>. ((((((((....(.(((...(((.[.[[)))......))))(((.((((....)))))))...(]].](((((....)))))..))))))))). SAM-I riboswitch from T. tencongensis variant A94G apo form; SAM-I riboswitch 3iqr A 94 2.55 RF00162 URS000080DF1C_119072 20637415 0010468 119072 ggcuuaucaagagagguggagggacuggcccgaugaaacccggcaaccagaaauggugccaauuccugcagcggaaacguugaaagaugagccg <<<<<<<<......<<<...<<<...((>>>......>>>.<<<<.<<<....>>>>>>>....))..<<<<<....>>>>>...>>>>>>>>. ((((((((....(.(((...(((.[.[[)))......))))(((..(((....))).)))...(]].](((((....)))))..))))))))). SAM-I riboswitch from T. tencongensis variant A94G bound with SAM; SAM-I riboswitch 3ivn A 69 2.8 RF00167 URS00021ED8E6_1423 20022916 0009113 1423 ggccaguauaaccucaaugauaugguuugagggugucuaccaggaaccguaaaauccugacuacugguc <<<<<<<<...<<<<<<......((.>>>>>>.<....>.<<<<<.))......>>>>>..>>>>>>>> (((((((({..((((((......[[.))))))[.(...}](((((.]]......))))).))))))))) Structure of the U65C mutant A-riboswitch aptamer from the Bacillus subtilis pbuE operon; A-riboswitch 3ivn B 69 2.8 RF00167 URS00021ED8E6_1423 20022916 0009113 1423 ggccaguauaaccucaaugauaugguuugagggugucuaccaggaaccguaaaauccugacuacugguc <<<<<<<<...<<<<<<......((.>>>>>>.<....>.<<<<<.))......>>>>>..>>>>>>>> (((((((({..((((((......[[.))))))[.(...}](((((.]]......))))).))))))))) Structure of the U65C mutant A-riboswitch aptamer from the Bacillus subtilis pbuE operon; A-riboswitch 3iyq A 349 13.0 RF00023 URS000046D244_300852 20953161 0006401 300852 gggggugaaacggucucgacgggggucgccgagggcguggcugcgcgccgaggugcggguggccucguaaaaacccgcaacggcauaacugccaacaccaacuacgcucucgcggcuuaaugaccgcgaccucgcccgguagcccugccgggggcucaccggaagcggggacacaaacccggcuagcccggggccacgcccucuaaccccgggcgaagcuugaagggggcucgcuccuggccgcccguccgcgggccaagccaggaggacacgcgaaacgcggacuacgcgcguagaggcccgccguagggaccuucggacggggguucgacuccccccaccuccacca <<<<<<<............<<.<<<<........<<<.<<<<.<<<<<((((..<<<<<....))))......>>>>>...............................<<<<<..........>>>>>..<<<..<<<<<<<....(((...>>>.>>>>....>>.>..........)))...(((.(((.....<<<<<.....))).)))...........>>>>>....<<<<<<<.<....((((((..>...>>>>>>>............))))))....>>>>>....>>>>>>>.......>>>>.>>...<<<<<.......>>>>>>>>>>>>.... ((((..(...............((((.......((((.((((.((((([[[...((((.(....]]].....).))))...............................((((((........))))))........[[[.[[...((((...]]..]]]...................))))...[[.[[[.....((((..(...]]].]]..........)..))))....((.((((.((..[[.[[[[.))...))))).)............]]]].]]...)))))....))))))))......))))......(.(((.......))).))..)))).... tmRNA-SmpB: a journey to the center of the bacterial ribosome; tmRNA 3iyr A 349 13.0 RF00023 URS000046D244_300852 20953161 0006401 300852 gggggugaaacggucucgacgggggucgccgagggcguggcugcgcgccgaggugcggguggccucguaaaaacccgcaacggcauaacugccaacaccaacuacgcucucgcggcuuaaugaccgcgaccucgcccgguagcccugccgggggcucaccggaagcggggacacaaacccggcuagcccggggccacgcccucuaaccccgggcgaagcuugaagggggcucgcuccuggccgcccguccgcgggccaagccaggaggacacgcgaaacgcggacuacgcgcguagaggcccgccguagggaccuucggacggggguucgacuccccccaccuccacca <<<<<<<............<<<.<<<........<<<.<<<..<<<<.((((..<<<<<<...)))).....>>>>>>...............................<<<<<<........>>>>>>..<<<.<<<<.<<....(((.....>>..>>>>...>>>............)))...[[.(((.....<<<<<.....))).]]............>>>>>...<<<<<<<<.<...(((((((..>...>>>>>>>>...........)))))))....>>>>.....>>>>>>.......>>.>>>>...<<<<<.......>>>>>>>>>>>>.... ((((..(.............(..(((........(((.(((...((((..[[..((((.(...]].......).))))...............................((((((........))))))..((((.(((.(.....[[[[.....)..)))...))))...........]]]]...((((((.....[[[[......)))))).............]]]]...[[[..[[[.[...(((((((..]...]]]..]].]..........)))))))...))))......)))))).......)))..)....(.(((.......))).))..)))).... tmRNA-SmpB: a journey to the center of the bacterial ribosome; tmRNA 3iz4 A 377 13.6 RF00023 URS000080E017_562 20940705 0006401 562 ggggcugauucuggauucgacgggauuugcgaaacccaaggugcaugccgaggggcgguuggccucguaaaaagccgcaaaaaauagucgcaaacgacgaaaacuaccaucaucaucaucacaugaggaucacccauguaacgaugaugaugccucucucccuagccuccgcucuuaggacggggaucaagagaggucaaacccaaaagagaucgcguggaagcccugccugggguugaagcguuaaaacuuaaucaggcuaguuuguuaguggcguguccguccgcagcuggcaagcgaauguaaagacugacuaagcauguaguaccgaggacguaggaauuucggacgcggguucaacucccgccagcuccacc <<<<<<<.............<<<<<<<<...<...<<..<<<<<<<<..<<<<..(((....>>>>........)))................................<<<<<<<<.<.<<<<<.<<....>>>>>>>.>.>>>>>>>>...<<<<<.<<<<..<<....((((..>>..>>>>.....>>>>>............))))....[[[...((((..<<<<<.))))...]]]............>>>>>..<<<<<<<<<<.<<<.(((.(((>>>.>>>>>>>>>>.........))).)))....>>>>...>>>>..>>...>..>>>>>>>>...<<<<<.......>>>>>>>>>>>>... (((((((....[........((..(((........((..((((((((((((((..[[[.[..))))).....].]]]................................((((((((.(.(((((.((....))))))).).)))))))).(.(((((.((((..(((...[[[[[)))..)))).....)))))..)........]]]]]....[.....[[[[..(((((.]]]].....]............)))))..(((((((((..(((.[[[.[[[)))..))))))))).........]]].]]]...))))))...)))..)).......)))..))...(((((...]...))))))))))))... Modified E. coli tmRNA in the resume state with the tRNA-like domain in the ribosomal P site interacting with the SmpB; Modified E. coli transfer-messenger RNA 3izy N 76 10.8 RF00005 URS000011107D_9913 21368145 0030533 0006412 9913 gcggauuuagcucaguugggagagcgccagacugaagaucuggagguccuguguucgauccacagaauucgcacca ...<<.....<............>..<<<...........>>>........................>>....... ...........(...........).................................................... Mammalian mitochondrial translation initiation factor 2; tRNA-Phe 3j0l Y 75 9.8 RF00005 URS00005AA258_9986 22017870 0030533 0006412 9986 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacc <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>... (..((((..((............))..((((.......))))......((.((.......)).))))))..)... Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 9.8A cryo-EM map: classic PRE state 1; tRNA 3j0l V 75 9.8 RF00005 URS00005AA258_9986 22017870 0030533 0006412 9986 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacc <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>... (((((((..((((.....[..)))).(((((.......))))).....(((((..]....))))))))))))... Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 9.8A cryo-EM map: classic PRE state 1; tRNA 3j0l W 76 9.8 RF00005 URS00005AA258_9986 22017870 0030533 0006412 9986 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((........)))).((((.........)))).....((.((.......)).))))))))).... Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 9.8A cryo-EM map: classic PRE state 1; tRNA 3j0o Y 75 9.0 RF00005 URS00005AA258_9986 22017870 0030533 0006412 9986 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacc <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>... (..((((..((............))..((((.......))))......((.((.......)).))))))..)... Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 9A cryo-EM map: classic PRE state 2; tRNA 3j0o V 75 9.0 RF00005 URS00005AA258_9986 22017870 0030533 0006412 9986 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacc <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>... (((((((..((((.....[..)))).(((((.......))))).....(((((..]....))))))))))))... Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 9A cryo-EM map: classic PRE state 2; tRNA 3j0o W 76 9.0 RF00005 URS00005AA258_9986 22017870 0030533 0006412 9986 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((........)))).((((.........)))).....((.((.......)).))))))))).... Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 9A cryo-EM map: classic PRE state 2; tRNA 3j0p Y 75 10.6 RF00005 URS000031D44F_9986 22017870 0030533 0006412 9986 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacc <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>... (..((((..((............))..((((.......))))......((.((.......)).))))))..)... Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 10.6A cryo-em map: rotated PRE state 1; tRNA 3j0p W 77 10.6 RF00005 URS000041AF00_9986 22017870 0030533 0006412 9986 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 10.6A cryo-em map: rotated PRE state 1; tRNA 3j0q Y 77 10.6 RF00005 URS000041AF00_9986 22017870 0030533 0006412 9986 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 10.6A cryo-em map: rotated PRE state 2; tRNA 3j0q W 77 10.6 RF00005 URS000041AF00_9986 22017870 0030533 0006412 9986 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 10.6A cryo-em map: rotated PRE state 2; tRNA 3j16 L 75 7.2 RF00005 URS00005AD0B9_4932 22358840 0030533 0006412 4932 uccgugauaguuuaauggucagaaugggcgcuugucgcgugccagaucgggguucaauuccccgucgcggagcca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>....<<<<<.......>>>>>>>>>>>>.... (((((((..((((........)))).(((.(.......).)))....(((((.......)))))))))))).... Models of ribosome-bound Dom34p and Rli1p and their ribosomal binding partners; P-site tRNA 3j46 p 76 10.1 RF00005 URS00001ACE3E_562 24153188 0030533 0006412 562 gcgggaauagcucaguugguagagcacgaccuugccaaggucggggucgcgaguucgagucucguuucccgcucca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((...((..........))..(((((.......))))).....(((((.......)))))))))))).... Structure of the SecY protein translocation channel in action; P-tRNA 3j46 a 76 10.1 RF00005 URS00005AA258_562 24153188 0030533 0006412 562 gcccggauagcucagucgguagagcaggggauugaanauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))).... Structure of the SecY protein translocation channel in action; A-tRNA 3j5s E 77 7.5 RF00005 URS000041AF00_562 24389465,24389466 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... EttA binds to ribosome exit site and regulates translation by restricting ribosome and tRNA dynamics; P-site tRNA FMet 3j5y D 88 9.7 RF00005 URS00000E7B03_9986 24335085 0030533 0006412 9986 gcggggguugccgagccuggucaaaggcgggggacucaagauccccucccguagggguuccgggguucgaauccccgcccccgcacca <<<<<<<..<<<.............>>><<<<<<.......>>>>>><<<....>>>...<<<<<.......>>>>>>>>>>>>.... (((((((..(((.......[.....)))((((((.......))))))(((....)))...(((((..]....)))))))))))).... Structure of the mammalian ribosomal pre-termination complex associated with eRF1-eRF3-GDPNP; tRNA-Leu 3j77 PT 77 6.2 RF00005 URS000041AF00_562 25043550 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA); P/E-site initiator transfer RNAfMet 3j78 ET 77 6.3 RF00005 URS000041AF00_562 25043550 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs); P/E-site initiator transfer RNAfMet 3j78 PT 77 6.3 RF00005 URS000041AF00_562 25043550 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs); P/E-site initiator transfer RNAfMet 3j7a 7 74 3.2 RF00005 URS000035398D_36329 24913268 0030533 0006412 36329 ggguaauuggcgcaguugguuagcgcgcgggucucauaaucccgaggucgugaguucgauccucacauuaccca .<<<.....<<...........>>..<............>......<..<<.......>>..>...>>>..... .(.(.....((...........))(.(............).)....(..((.......))..)...).)..... Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, small subunit; tRNA 3j7r S5 74 3.9 RF00005 URS000080E2D5_9823 24930395 0030533 0006412 9823 gcccggauagcucaggguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca .<<<<<<.................<<<<<<.....>>>>>>......<<<<.......>>>>.>>>>>>..... ..((.(..........[........(((((.....))))).......(.(...].....).)...)))...... Structure of the translating mammalian ribosome-Sec61 complex; A/P tRNA 3j7r S6 76 3.9 RF00005 URS000080DE53_9823 24930395 0030533 0006412 9823 ugcccgguagccccgaagguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca ....<<<..<<............>>.<<<<<<.....>>>>>>......<<<.........>.>>.>>>....... .(.((((....(.(.......).)..((((.........)))).....(.(.(.(..)..)..)).)))).).... Structure of the translating mammalian ribosome-Sec61 complex; P/E tRNA 3j81 1 74 4.0 RF00005 URS000080E1DE_28985 25417110 0030533 0006412 28985 gcgccguggcgcaguggaagcgcgcaggucucauaaaccugauguccucggaucgaaaccgagcggcgcuacca <<<<<<..<<<<.......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))..... CryoEM structure of a partial yeast 48S preinitiation complex; Met-tRNAi 3j92 2 75 3.6 RF00005 URS000041AF00_9823 25578875 0030533 0006412 9823 cgcgggguggagcagcgguagcucgucgggcucauaacccgaaggucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((....[..)))).(((((.......))))).....(((((..]....)))))))))))..... Structure and assembly pathway of the ribosome quality control complex; tRNA 3j9w AX 77 3.9 RF00005 URS00002C7A07_224308 25903689 0030533 0006412 224308 gguccgguaguucaguugguuagaaugccugccugucacgcaggaggucgcggguucgagucccguccggaccgcca <<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))).... Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex; tRNA-Asp 3j9y v 77 3.9 RF00005 URS00008116A7_562 25870267 0030533 0006412 562 cgcggggnggagcagccuggnagcucgucgggcucauaacccgaagaucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Cryo-EM structure of tetracycline resistance protein TetM bound to a translating E.coli ribosome; P-site fMet-tRNAfMet 3j9z S6 77 3.6 RF00005 URS00001BBAFC_274 26229983 0030533 0006412 274 cgcgggguggagcagccugguagcucgucgggcucauaacccgaagaucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G; P-tRNA 3j9z S7 74 3.6 RF00005 URS0000868542_274 26229983 0030533 0006412 274 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcac <<<<<<<..<<<<........>>>>.<<<<<<<...>>>>>>>.....<<<<<.......>>>>>>>>>>>>.. (.(((((..((((.....[..)))).((((.........)))).....((.(...].....).))))))).).. Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G; E-tRNA 3ja1 S2 77 3.6 RF00005 URS00001BBAFC_274 26229983 0030533 0006412 274 cgcgggguggagcagccugguagcucgucgggcucauaacccgaagaucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))..... Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G; P/E-tRNA 3jag 3 75 3.65 RF00005 URS000086855F_9986 26245381 0030533 0006412 9986 gcccggauagcucagcuguagagcaucagacuuuuaaucugaggguccaggguucaagucccuguucgggcgcca <<<<<<<..<<<<.......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... ((((..(..((((....[..)))).(((((.......))))).....(((((..]....))))))..)))).... Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codon; tRNA(Lys) 3jah 3 75 3.45 RF00005 URS000086855F_9986 26245381 0030533 0006412 9986 gcccggauagcucagcuguagagcaucagacuuuuaaucugaggguccaggguucaagucccuguucgggcgcca <<<<<<<..<<<<.......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... ((((..(..((((....[..)))).(((((.......))))).....(((((..]....))))))..)))).... Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codon; tRNA(Lys) 3jai 3 75 3.65 RF00005 URS000086855F_9986 26245381 0030533 0006412 9986 gcccggauagcucagcuguagagcaucagacuuuuaaucugaggguccaggguucaagucccuguucgggcgcca <<<<<<<..<<<<.......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... ((((..(..((((....[..)))).(((((.......))))).....(((((..]....))))))..)))).... Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon; tRNA(Lys) 3jaj 4 206 3.75 RF00017,RF01856 URS000086854F_9986 26158507 0006617 0005786 9986 gccgggcgcgguggcgcgcgccuguagucccagcuacucgggaggcugaggcuggaggaucgcuuuagcgagaccccgucucgacuaaguucggcaucaauauggugaccucccgggagcgggggaccaccagguugccuaaggaggggugaaccggcccaggucggaaacggagcaggucaaaacucccgugcugaucaguaguu <<<<<<<<<<..(((.>>>>>>>....<<<<.)))....>>>>>>>..<<<<.<<....<<<<<..>>>>>...>>.>>>>.<<<<.<..<<<<<<<<<<<.<<<<<..<<<<<<....>>>>>>..>>>>>.>>>>........<<<<<.....<<<<....<<<....>>>....>>>>...>>>>>.>>>>>>>....>>>>> ((((((((((..[[[.)))))))....((((.]]..]..))))))).(((.(.((....(((((..)))))...)).).)))(.((..(.(((((((((((.(((((..((((((....))))))..))))).))))......(.(((((.....((((....(((....)))....))))...))))))))))))).)...)).) Structure of the engaged state of the mammalian SRP-ribosome complex; SRP 7S RNA 3jan 4 206 3.75 RF00017,RF01856 URS000086854F_9986 26158507 0006617 0005786 9986 gccgggcgcgguggcgcgcgccuguagucccagcuacucgggaggcugaggcuggaggaucgcuuuagcgagaccccgucucgacuaaguucggcaucaauauggugaccucccgggagcgggggaccaccagguugccuaaggaggggugaaccggcccaggucggaaacggagcaggucaaaacucccgugcugaucaguaguu <<<<<<<<<<..(((.>>>>>>>....<<<<.)))....>>>>>>>..<<<<.<<....<<<<<..>>>>>...>>.>>>>.<<<<.<..<<<<<<<<<<<.<<<<<..<<<<<<....>>>>>>..>>>>>.>>>>........<<<<<.....<<<<....<<<....>>>....>>>>...>>>>>.>>>>>>>....>>>>> ((((((((((..[[[.)))))))....((((.]]..]..))))))).(((.(.((....(((((..)))))...)).).)))(.((..(.(((((((((((.(((((..((((((....))))))..))))).))))......(.(((((.....((((....(((....)))....))))...))))))))))))).)...)).) Structure of the scanning state of the mammalian SRP-ribosome complex; SRP 7S RNA 3jap 1 75 4.9 RF00005 URS000080E1DE_28985 26212456 0030533 0006412 28985 agcgccguggcgcaguggaagcgcgcaggucucauaaaccugauguccucggaucgaaaccgagcggcgcuacca <<<<<<<..<<<<.......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))).... Structure of a partial yeast 48S preinitiation complex in closed conformation; Met-tRNAi (U31:A39 variant) 3jb9 C 105 3.6 RF00020 URS000086853C_4896 26292707 0030627 0000244,0000353,0000395 0005682,0046540,0005730 4896 cgucaaagcacuuugcaaaagcuaacguaucuguuucuugccuuuuaccagaaacagccguuuguaaggugugcuaauuugacuguauaguuuuuguaaucuuuu .<<<<<<<<<<<<<<<<<<...........<<<<<<<<.<.......>.>>>>>>>>...>>>>>>>>>>>>.....>>>>>>...................... (((((((((((((((((((......((...((((((((.(.......).)))))))).)))))))))))))).....)))))).).................... Cryo-EM structure of the yeast spliceosome at 3.6 angstrom resolution; U5 snRNA 3jb9 N 90 3.6 RF00026 URS0000868525_4896 26292707 0030621 0000244,0000353 0005688,0046540 4896 gaucuucggaucacuuuggucaaauugaaacgauacagagaagauuagcauggccccugcacaaggaugacacugcgacauugagagaaa <<<<....>>>>......................................<<...<<<.....>>>....>>.................. ((((....))))......................................((..((((.....)))..).)).................. Cryo-EM structure of the yeast spliceosome at 3.6 angstrom resolution; U6 snRNA 3jb9 P 111 3.6 RF00004 URS0000868541_4896 26292707 0045131 0000348 0005686 4896 auucucucuuugccuuuuggcuuagaucaaguguaguaucuguaucuuguuuuugguuuuuggaaagccucugggcuaugcuuuccucuugcuauugcacuacuggcaagc ...............................................................<<<<<.<.......>.>>>>>...<<<<<<...........>>>>>>. ..................................................................((.(.......).))......((((((...........)))))). Cryo-EM structure of the yeast spliceosome at 3.6 angstrom resolution; U2 snRNA 3jbn 7 76 4.7 RF00005 URS000080DFF5_562 26432834,24913268 0030533 0006412 562 cgcgggguggagcagccgguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((.....[..)))).(((((.......))))).....(((((..]....)))))))))))..... Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P-tRNA; P-tRNA 3jbo 7 75 5.8 RF00005 URS0000868517_562 26432834,24913268 0030533 0006412 562 cgcgggguggagcagccgguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacc .<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>.... .((((((..((((.....[..))))..((((.......))))......(.(((..]....))).))))))).... Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA; P/E-tRNA 3jbp 7 74 6.7 RF00005 URS000035398D_36329 26432834,24913268 0030533 0006412 36329 ggguaauuggcgcaguugguuagcgcgcgggucucauaaucccgaggucgugaguucgauccucacauuaccca .<<<.....<<...........>><.<..<......>..>.>.......<.........>......>>>..... .(.(..(..((...........))(.(..(......)..).)....(...(.......)...).).).)..... Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to E-tRNA; E-tRNA 3jbu v 76 3.64 RF00005 URS00008FED32_83333 26670735 0030533 0006412 83333 cggcacguagcgcagccgguagcgcaccgucaugccgugucgggggucggagguucaaauccucucgugccgacca <<<<<<...<<<<........>>>>.<<<.<<.....>>.>>>.......<<<.......>>>...>>>>>>.... .(.((((..((((........)))).(((...........)))......((((.......))).))))).)..... Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps; glycine-tRNA 3jbv V 76 3.32 RF00005 URS00008FED3A_83333 26670735 0030533 0006412 83333 gcccggauagcucagucgguagagcaggggauuaggaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (.(((((..((((........))))..((...........))......((.((.......)).))))))).).... Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps; RNA (76-MER) 3jbv W 75 3.32 RF00005 URS00008FED25_83333 26670735 0030533 0006412 83333 cggcacguagcgcagcugguagcgcaccgucaugccgugucgggggucggagguucaaauccucucgugccgaca .<....<..<<<<........>>>>.<<<.<.......>.>.>>......<<<.......>>>.>....>..... .(.(.....(((..........))).(...(.......)....).......(.........)......).).... Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps; RNA (75-MER) 3jcd 8 76 3.7 RF00005 URS00005AA258_32630 26809121 0030533 0006412 32630 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).(((((.......))))).....(((((..]....)))))))))))).... Structure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4); tRNA 3jcd 9 76 3.7 RF00005 URS00005AA258_32630 26809121 0030533 0006412 32630 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>><<<<<..<...>..>>>>.>...<<<<<.......>>>>>>>>>>>>.... (((((((..((((........))))..(((.........))).........((.......))...))))))).... Structure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4); tRNA 3jce 6 76 3.2 RF00005 URS00005AA258_32630 26809121 0030533 0006412 32630 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..))))((((((.......))))).)...(((((..]....)))))))))))).... Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4); tRNA 3jce 8 77 3.2 RF00005 URS000041AF00_32630 26809121 0030533 0006412 32630 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4); tRNA 3jce 9 76 3.2 RF00005 URS00005AA258_32630 26809121 0030533 0006412 32630 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<...<<<<........>>>>.<<<<<.......>>>>>.....<<<<.........>>>>.>>>>>>.... ..(((......((........))....(((.........)))......(((((.......)))))..)).)..... Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4); tRNA 3jcj v 77 3.7 RF00005 URS00001BBAFC_562 26973877 0030533 0006412 562 cgcggggnggagcagccuggnagcucgucgggcucauaacccgaagaucgucggnucaaauccggcccccgcaacca ..<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>...... ..(((((..((((.........)))).(((((.......))))).....(((((.......))))))))))...... Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association; tRNA 3jcm D 45 3.8 RF00026 URS00006184A9_559292 26743623 0030621 0000244,0000353 0005688,0046540 559292 aauacagagaucagcaguuccccugcauaaggaugaaccguguuu ............................................. ............................................. Cryo-EM structure of the spliceosomal U4/U6.U5 tri-snRNP; SNR6 snRNA 3jcm E 85 3.8 RF00015 URS00001143F5_559292 26743623 0017070 0000244,0000353 0005687,0046540 559292 auccuuaugcacgggaaauacgcauaucagugaggauucguccgagauuguguuuuugcugguuagggaauuuuuggaauaccuu ...................<<<<<.<<<.....<<<....>>>..>>>>>>>>................................ ...................(((((.(((.....(((....)))..))))))))................................ Cryo-EM structure of the spliceosomal U4/U6.U5 tri-snRNP; SNR14 snRNA 3jcm F 113 3.8 RF00020 URS000053F313_559292 26743623 0000244,0000353 0005682,0046540 559292 ggaggucaacaucaagaacugugggcgccuauagaacuuauaacgaacaugguucuugccuuuuaccagaaccauccggguguugucuccauccauauuuuuuggaacuuuuc <<<<<.<<<<<<.<<<..<<<<<<<..>>>>>>>..>>>.........<<<<<<<<...........>>>>>>>>....>>>>>>>>>>>....................... ((((..(((((.((((..((.(.((())).).))..)))....((...((((((((.(.......).)))))))).))).))))).))))....................... Cryo-EM structure of the spliceosomal U4/U6.U5 tri-snRNP; SNR7-L snRNA 3jcn v 77 4.6 RF00005 URS00001BBAFC_562 26973877 0030533 0006412 562 cgcggggnggagcagccuggnagcucgucgggcucauaacccgaagaucgucggnucaaauccggcccccgcaacca ..<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>...... ...((((..((((.........)))).(((((.......))))).....(((((.......)))))))))....... Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association: Initiation Complex I; tRNA 3jcr M 103 7.0 RF00015 URS00008FED2D_9606 26912367 0017070 0000244,0000353 0005687,0046540 9606 agcuuugcgcaguggcucguagccaaugagguuuauccgaggcgcgauugcuaauccgugacgacuagucggcauuggcaauuuuugacagucucgagacugg ................<<<...<......<.......>...>..>>>........<.....(<<...)>>......>............<<<(.<>>).>>.. ................(((.........................)))..............((((..))))...................((((..))))... 3D structure determination of the human*U4/U6.U5* tri-snRNP complex; U4 snRNA 3jcr N 37 7.0 RF00026 URS000035C796_9606 26912367 0030621 0000244,0000353 0005688,0046540 9606 auuagcagccccugcgcaaggaugacacgcaaauuuu ..................................... ..................................... 3D structure determination of the human*U4/U6.U5* tri-snRNP complex; U6 snRNA 3jcr H 63 7.0 RF00020 URS00001380AF_9606 26912367 0000244,0000353 0005682,0046540 9606 acucuuucucuucaaaaucuuucgccuuuuacuaaagauuuuggagaggaagagucaauuuuu <<<.<<<<<<<<<..<<<<<<............>>.>>>>..>>>>>>>>.>>>>........ (((..(.((((.((.((((((.............)))))).)).)))).)..)))........ 3D structure determination of the human*U4/U6.U5* tri-snRNP complex; U5 snRNA 3kfu K 74 3.0 RF00005 URS00006143B5_300852 20717102 0030533 0006412 300852 uccgcgguagcucagggnagagcagccggcuguuaaccgguaggucgcaggnucgaguccugcccgcggagcca <<<<<<<..<<<<......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((...[..)))).(((((.......))))).....(((((..]....)))))))))))).... Crystal structure of the transamidosome; tRNA-Asn 3kfu L 74 3.0 RF00005 URS00006143B5_300852 20717102 0030533 0006412 300852 uccgcgguagcucagggnagagcagccggcuguuaaccgguaggucgcaggnucgaguccugcccgcggagcca <<<<<<<..<<<<......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((...[..)))).(((((.......))))).....(((((..]....)))))))))))).... Crystal structure of the transamidosome; tRNA-Asn 3kfu M 71 3.0 RF00005 URS00006143B5_300852 20717102 0030533 0006412 300852 uccgcgguagcucagggnagagcagccggcuguuaaccgguaggucgcaggnucgaguccugcccgcggag <<<<<<<..<<<<......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>. (((((((..((((...[..)))).(((((.......))))).....(((((..]....)))))))))))). Crystal structure of the transamidosome; tRNA-Asn 3kfu N 71 3.0 RF00005 URS00006143B5_300852 20717102 0030533 0006412 300852 uccgcgguagcucagggnagagcagccggcuguuaaccgguaggucgcaggnucgaguccugcccgcggag <<<<<<<..<<<<......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>. (((((((..((((...[..)))).(((((.......))))).....(((((..]....)))))))))))). Crystal structure of the transamidosome; tRNA-Asn 3ktv A 108 3.8 RF00017 URS000080E17A_9606 20179341 0006617 0005786 9606 gcggcaucaauauggugaccucccgggagcgggggaccaccagguugccuaaggaggggugaaccggcccaggucggaaacggagcaggucaaaacucccgugcugua .<<<<<<<<<<.<<<<<..<<<<<<....>>>>>>..>>>>>.>>>>........<<<<<......<<<....<<<....>>>....>>>....>>>>>.>>>>>>.. .(((((.(((..(((((..((((((....))))))..)))))..)))......(.(((((.....((((....(((....)))....))))...)))))).))))).. Crystal structure of the human SRP19/S-domain SRP RNA complex; SRP RNA 3ktv C 108 3.8 RF00017 URS000080E17A_9606 20179341 0006617 0005786 9606 ncggcaucaauauggugaccucccgggagcgggggaccaccagguugccuaaggaggggugaaccggcccaggucggaaacggagcaggucaaaacucccgugcugua <<<<<<<<<<<.<<<<<..<<<<<<....>>>>>>..>>>>>.>>>>........<<<<<......<<<....<<<....>>>....>>>....>>>>>.>>>>>>>. .((((((((((.(((((..((((((....))))))..))))).))))(....)(.(((((.....((((....(((....)))....))))...)))))))))))).. Crystal structure of the human SRP19/S-domain SRP RNA complex; SRP RNA 3ktw C 96 3.2 RF01857,RF00169,RF00017 URS000080DE8C_2287 20179341 0006617 0048501,0005786 2287 agauagucguggguucccuuucuggagggagagggaauuccacguugaccgggggaaccggccaggcccggaagggagcaaccgugcccggcuauc .<<<<..<<<<<<<<<<<<<<<<....>>>>>>>>>>>.>>>>>....<<<<<.....<<<.....<<<....>>>.....>>>..>>>>>.>>>> .(((...((((((((((((((((....))))))))))).))))).....((((.....(((.....(((....))).....)))..))))...))) Crystal structure of the SRP19/S-domain SRP RNA complex of Sulfolobus solfataricus; SRP RNA 3ktw D 95 3.2 RF01857,RF00169 URS000080DE8C_2287 20179341 0006617 0048501 2287 agauagucguggguucccuuucuggagggagagggaauuccacguugaccgggggaaccggccaggcccggaagggagcaaccgugcccggcuau ..<<<<.<<<<<<<<<<<<<<<<....>>>>>>>>>>>.>>>>>....<.<<<.....<<<...<.<<<....>>>..>..>>>..>>>.>>>>> ..(((..((.(((((((((((((....))))))))))).)).))....(.(((.....(((.....(((....))).....)))..))).).))) Crystal structure of the SRP19/S-domain SRP RNA complex of Sulfolobus solfataricus; SRP RNA 3l0u A 73 3.0 RF00005 URS000080E264_83333 20203084 0030533 0006412 83333 gcgcggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgcgca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>. (((((((..((((.....[..)))).(((((.......))))).....(((((..]....)))))))))))). The crystal structure of unmodified tRNAPhe from Escherichia coli; Unmodified tRNAPhe 3l3c P 141 2.85 RF00234 URS000080E011_1392 19228039 0003824 0010468 1392 ngcaccauugcacuccggugccaguugacgaggugggguuuaucgagauuucggcggaugacucccgguuguucaucacaaccgcaagcuuuuacuuaaaucauuaaggugacuuaguggacaaaggugaaagugugauga <<<<<<..........>>>>>>......(((...<<<<<<..)))..............>>>>>><<<<<<...((((>>>>>>...<<<<<<<<<....<<<<<<<<....>>>>>>>.>....>>>>>>>>>.)))).. ((((((..........))))))......[[[...((((((..]]]..............))))))((((((....[[[))))))...((((.(((......(((((((....))))))).......))).)))).]]]... Crystal structure of the Bacillus anthracis glmS ribozyme bound to Glc6P; GLMS RIBOZYME 3l3c Q 141 2.85 RF00234 URS000080E011_1392 19228039 0003824 0010468 1392 ngcaccauugcacuccggugccaguugacgaggugggguuuaucgagauuucggcggaugacucccgguuguucaucacaaccgcaagcuuuuacuuaaaucauuaaggugacuuaguggacaaaggugaaagugugauga <<<<<<..........>>>>>>......(((...<<<<<<..)))..............>>>>>><<<<<<.((((((>>>>>>...<<<<<<<<<....<<<<<<<<....>>>>>>>.>....>>>>>>>>>.)))))) ((((((..........))))))......[[[...((((((..]]]..............))))))((((((..[[[[[))))))...(((((((((.....(((((((....)))))))......))))))))).]]]]]. Crystal structure of the Bacillus anthracis glmS ribozyme bound to Glc6P; GLMS RIBOZYME 3l3c R 141 2.85 RF00234 URS000080E011_1392 19228039 0003824 0010468 1392 ngcaccauugcacuccggugccaguugacgaggugggguuuaucgagauuucggcggaugacucccgguuguucaucacaaccgcaagcuuuuacuuaaaucauuaaggugacuuaguggacaaaggugaaagugugauga <<<<<<..........>>>>>>......(((...<<<<<<..)))..............>>>>>><<<<<<..(((((>>>>>>...<<<<<<<<<....<<<<<<<<....>>>>>>>.>....>>>>>>>>>.))))). ((((((..........))))))......[[[...((((((..]]]..............))))))((((((..[[[[[))))))...(((((((((.....(((((((....)))))))......))))))))).]]]]]. Crystal structure of the Bacillus anthracis glmS ribozyme bound to Glc6P; GLMS RIBOZYME 3l3c S 141 2.85 RF00234 URS000080E011_1392 19228039 0003824 0010468 1392 ngcaccauugcacuccggugccaguugacgaggugggguuuaucgagauuucggcggaugacucccgguuguucaucacaaccgcaagcuuuuacuuaaaucauuaaggugacuuaguggacaaaggugaaagugugauga <<<<<<..........>>>>>>......(((...<<<<<<..)))..............>>>>>><<<<<<..(((((>>>>>>...<<<<<<<<<....<<<<<<<<....>>>>>>>.>...>>.>>>>>>>.))))). ((((((..........))))))......[[[....(((((..]]]..............)))))..(((((....[[[)))))....((((..........(((((((....)))))))...........)))).]]]... Crystal structure of the Bacillus anthracis glmS ribozyme bound to Glc6P; GLMS RIBOZYME 3la5 A 71 1.7 RF00167 URS000080E171_1423 20133756 0009113 1423 ggcuucauauaauccgaaugauaugguuucggagcuuccaccaagagccuuaaacucuugacuauggaguc <<<<<<<<<...<<<<<<......<<.>>>>>>........<<<<<<>>.....>>>>>>..>>>>>>>>> ((((.(((((..((((((......[[.))))))[.....)]((((((]].....))))))..)))).)))) X-ray crystal structure of mc6 RNA Riboswitch bound to azacytosine; Adenosine RIboswitch 3lqx B 49 1.93 RF00169 URS000080DD2B_32630 12269812 0006617 0048501 32630 ggcucuguuuaccaggucagguccgaaaggaagcagccaaggcagagcn <<<<<<<<<<....<<<....<<<....>>>....>>>.>>>>>>>>>> ((((((((((....(((....(((....)))....))).)))))))))) SRP ribonucleoprotein core complexed with cobalt hexammine; SRP RNA 3lwo D 58 2.855 RF02796 URS000080DEB8_32630 20615421 0006396 32630 gggccacggaaaccgcgcgcggugaucaaugagccgcguucgcucccguggcccacaa <<<<<<<<<.......<<<<<<<.........>>>>>>>......>>>>>>>>>.... (((((((((.......(((((((.........)))))))......))))))))).... Structure of H/ACA RNP bound to a substrate RNA containing 5BrU; H/ACA RNA 3lwp D 58 2.5 RF02796 URS000080DEB8_32630 20615421 0006396 32630 gggccacggaaaccgcgcgcggugaucaaugagccgcguucgcucccguggcccacaa <<<<<<<<<.......<<<<<<<.........>>>>>>>......>>>>>>>>>.... (((((((((.......(((((((.........)))))))......))))))))).... Structure of H/ACA RNP bound to a substrate RNA containing 5BrdU; H/ACA RNA 3lwq D 58 2.678 RF02796 URS000080DEB8_32630 20575532 0006396 32630 gggccacggaaaccgcgcgcggugaucaaugagccgcguucgcucccguggcccacaa <<<<<<<<<.......<<<<<<<.........>>>>>>>......>>>>>>>>>.... (((((((((.......(((((((.........)))))))......))))))))).... Structure of H/ACA RNP bound to a substrate RNA containing 3MU; H/ACA RNA 3lwr D 58 2.203 RF02796 URS000080DEB8_32630 20575532 0006396 32630 gggccacggaaaccgcgcgcggugaucaaugagccgcguucgcucccguggcccacaa <<<<<<<<<.......<<<<<<<.........>>>>>>>......>>>>>>>>>.... (((((((((.......(((((((.........)))))))......))))))))).... Structure of H/ACA RNP bound to a substrate RNA containing 4SU; H/ACA RNA 3lwv D 58 2.499 RF02796 URS000080DEB8_32630 20575532 0006396 32630 gggccacggaaaccgcgcgcggugaucaaugagccgcguucgcucccguggcccacaa <<<<<<<<<.......<<<<<<<.........>>>>>>>......>>>>>>>>>.... (((((((((.......(((((((.........)))))))......))))))))).... Structure of H/ACA RNP bound to a substrate RNA containing 2'-deoxyuridine; H/ACA RNA 3ndb M 136 3.0 RF01857 URS000080E28C_243232 21336278 0006617 0048501 243232 gucucgucccguggggcucggcggugggggagcaucuccuguaggggagauguaacccccuuuaccugccgaaccccgccaggcccggaagggagcaacgguaggcaggacgucggcgcucacgggggugcgggac <<.<<<.<<<<<<<<<<.<<<<<..<<<<<.<<<<<<<<<....>>>>>>>>>..>>>>>....<<<<<<.....<<<...<.<<<....>>>..>..>>>..>>>>>>.>>>>>>>.>>>>>>>>....>>>.>> ((((((..(((((.(((.(((((..(((((.(((((((((....)))))))))..)))))....((((((.....(((.....(((....))).....)))..)))))).))))))).).))))).....)))))) Crystal structure of a signal sequence bound to the signal recognition particle; SRP RNA 3owi A 88 2.845 RF00504 URS000080DF11_593588 21145485 0006545 593588 ngcucuggagagaaccguuuaaucggucgccgaaggagcaagcucugcggaaacgcagagugaaacucucaggcaaaaggacagagun .<<<<<<......<<<<......>>>>.<<<...<<<<...<<<<<<<<....>>>>>>>>....>>>.>.>>>.......>>>>>>. (((((((....(.((((......)))))(((...((((...((((((((....))))))))....))).).))).......))))))) Crystal structure of the glycine riboswitch bound to glycine; Domain II of glycine riboswitch 3owi B 88 2.845 RF00504 URS000080DF11_593588 21145485 0006545 593588 ggcucuggagagaaccguuuaaucggucgccgaaggagcaagcucugcggaaacgcagagugaaacucucaggcaaaaggacagagun <<<<<<<......<<<<......>>>>.<<<...<<<<...<<<<<<<<....>>>>>>>>....>>>.>.>>>.......>>>>>>> (((((((....(.((((......)))))(((...((((...((((((((....))))))))....))).).))).......))))))) Crystal structure of the glycine riboswitch bound to glycine; Domain II of glycine riboswitch 3oww A 88 2.802 RF00504 URS000080DF11_666 21145485 0006545 666 ngcucuggagagaaccguuuaaucggucgccgaaggagcaagcucugcggaaacgcagagugaaacucucaggcaaaaggacagagun .<<<<<<......<<<<......>>>>.<<<...<<<<...<<<<<<<<....>>>>>>>>....>>>.>.>>>.......>>>>>>. (((((((....(.((((......)))))(((...((((...((((((((....))))))))....))).).))).......))))))) Crystal structure of the glycine riboswitch bound to glycine; domain II of glycine riboswitch 3oww B 87 2.802 RF00504 URS000080DF11_666 21145485 0006545 666 ggcucuggagagaaccguuuaucggucgccgaaggagcaagcucugcggaaacgcagagugaaacucucaggcaaaaggacagagun <<<<<<<......<<<<.....>>>>.<<<...<<<<...<<<<<<<<....>>>>>>>>....>>>.>.>>>.......>>>>>>> (((((((....(.((((.....)))))(((...((((...((((((((....))))))))....))).).))).......))))))) Crystal structure of the glycine riboswitch bound to glycine; domain II of glycine riboswitch 3owz A 88 2.949 RF00504 URS000080DF11_666 21145485 0006545 666 ngcucuggagagaaccguuuaaucggucgccgaaggagcaagcucugcggaaacgcagagugaaacucucaggcaaaaggacagagun .<<<<<<......<<<<......>>>>.<<<...<<<<...<<<<<<<<....>>>>>>>>....>>>.>.>>>.......>>>>>>. (((((((....(.((((......)))))(((...((((...((((((((....))))))))....))).).))).......))))))) Crystal structure of glycine riboswitch, soaked in Iridium; Domain II of glycine riboswitch 3owz B 83 2.949 RF00504 URS000080DF11_666 21145485 0006545 666 ggcucuggagagaaccgucggucgccgaaggagcaagcucugcggaaacgcagagugaaacucucaggcaaaaggacagagun <<<<<<<......<<<<.>>>>.<<<...<<<<...<<<<<<<<....>>>>>>>>....>>>>..>>>.......>>>>>>> (((((((....(.((((.)))))(((...((((...((((((((....))))))))....))).).))).......))))))) Crystal structure of glycine riboswitch, soaked in Iridium; Domain II of glycine riboswitch 3ox0 A 88 3.049 RF00504 URS000080DF11_666 21145485 0006545 666 ngcucuggagagaaccguuuaaucggucgccgaaggagcaagcucugcggaaacgcagagugaaacucucaggcaaaaggacagagun .<<<<<<......<<<<......>>>>.<<<...<<<<...<<<<<<<<....>>>>>>>>....>>>.>.>>>.......>>>>>>. (((((((....(.((((......)))))(((...((((...((((((((....))))))))....))).).))).......))))))) Crystal structure of glycine riboswitch, unbound state; Domain II of glycine riboswitch 3ox0 B 88 3.049 RF00504 URS000080DF11_666 21145485 0006545 666 ggcucuggagagaaccguuuaaucggucgccgaaggagcaagcucugcggaaacgcagagugaaacucucaggcaaaaggacagagun <<<<<<<......<<<<......>>>>.<<<...<<<<...<<<<<<<<....>>>>>>>>....>>>.>.>>>.......>>>>>>> (((((((....(.((((......)))))(((...((((...((((((((....))))))))....))).).))).......))))))) Crystal structure of glycine riboswitch, unbound state; Domain II of glycine riboswitch 3oxb A 88 2.947 RF00504 URS000080E10C_666 21145485 0006545 666 ngcucuggagagaaccguuuaaucggucgccgaaggagcaagcucugcggaaacgcagagugaaacucccaggcaaaaggacagagun <<<<<<<......<<<<......>>>>.<<<...<<<<...<<<<<<<<....>>>>>>>>....>>>.>.>>>.......>>>>>>> ((((.((....(.((((......)))))(((...((((...((((((((....))))))))....))).).))).......)).)))) Crystal structure of glycine riboswitch with single mutation; Domain II of glycine riboswitch 3oxb B 87 2.947 RF00504 URS000080E10C_666 21145485 0006545 666 ggcucuggagagaaccguuuaucggucgccgaaggagcaagcucugcggaaacgcagagugaaacucccaggcaaaaggacagagun <<<<<<<......<<<<.....>>>>.<<<...<<<<...<<<<<<<<....>>>>>>>>....>>>.>.>>>.......>>>>>>> (((((((....(.((((.....)))))(((...((((...((((.(((....))).))))....))).).))).......))))))) Crystal structure of glycine riboswitch with single mutation; Domain II of glycine riboswitch 3oxd A 88 2.999 RF00504 URS000080DF55_666 21145485 0006545 666 ngcucuggagagaaccguuuaaucggucgccgaacgagcaagcucugcggaaacgcagagugaaacucugaggcaaaaggacagagun <<<<<<<......<<<<......>>>>.<<<...<<<<...<<<<<<<<....>>>>>>>>....>>>.>.>>>.......>>>>>>> (((((((....(.((((......)))))(((...((((...((((((((....))))))))....))).).))).......))))))) Crystal structure of glycine riboswitch with two mutations; domain II of glycine riboswitch 3oxd B 87 2.999 RF00504 URS000080DF55_666 21145485 0006545 666 ggcucuggagagaaccguuuaucggucgccgaacgagcaagcucugcggaaacgcagagugaaacucugaggcaaaaggacagagun <<<<<<<......<<<<.....>>>>.<<<...<<<<...<<<<<<<<....>>>>>>>>....>>>.>.>>>.......>>>>>>> (((((((....(.((((.....)))))(((...((((...((((((((....))))))))....))).).))).......))))))) Crystal structure of glycine riboswitch with two mutations; domain II of glycine riboswitch 3oxe A 88 2.899 RF00504 URS000080DF11_666 21145485 0006545 666 ngcucuggagagaaccguuuaaucggucgccgaaggagcaagcucugcggaaacgcagagugaaacucucaggcaaaaggacagagun .<<<<<<......<<<<......>>>>.<<<...<<<<...<<<<<<<<....>>>>>>>>....>>>.>.>>>.......>>>>>>. (((((((....(.((((......)))))(((...((((...((((((((....))))))))....))).).))).......))))))) crystal structure of glycine riboswitch, Mn2+ soaked; domain II of glycine riboswitch 3oxe B 88 2.899 RF00504 URS000080DF11_666 21145485 0006545 666 ggcucuggagagaaccguuuaaucggucgccgaaggagcaagcucugcggaaacgcagagugaaacucucaggcaaaaggacagagun <<<<<<<......<<<<......>>>>.<<<...<<<<...<<<<<<<<....>>>>>>>>....>>>.>.>>>.......>>>>>>> (((((((....(.((((......)))))(((...((((...((((((((....))))))))....))).).))).......))))))) crystal structure of glycine riboswitch, Mn2+ soaked; domain II of glycine riboswitch 3oxj A 88 3.2 RF00504 URS000080DF11_666 21145485 0006545 666 ngcucuggagagaaccguuuaaucggucgccgaaggagcaagcucugcggaaacgcagagugaaacucucaggcaaaaggacagagun .<<<<<<......<<<<......>>>>.<<<...<<<<...<<<<<<<<....>>>>>>>>....>>>.>.>>>.......>>>>>>. (((((((....(.((((......)))))(((...((((...((((((((....))))))))....))).).))).......))))))) crystal structure of glycine riboswitch, soaked in Ba2+; domain II of glycine riboswitch 3oxj B 87 3.2 RF00504 URS000080DF11_666 21145485 0006545 666 ngcucuggagagaaccguuuaucggucgccgaaggagcaagcucugcggaaacgcagagugaaacucucaggcaaaaggacagagun <<<<<<<......<<<<.....>>>>.<<<...<<<<...<<<<<<<<....>>>>>>>>....>>>.>.>>>.......>>>>>>> (((((((....(.((((.....)))))(((...((((...((((((((....))))))))....))).).))).......))))))) crystal structure of glycine riboswitch, soaked in Ba2+; domain II of glycine riboswitch 3oxm A 88 2.95 RF00504 URS000080DF11_666 21145485 0006545 666 ngcucuggagagaaccguuuaaucggucgccgaaggagcaagcucugcggaaacgcagagugaaacucucaggcaaaaggacagagun .<<<<<<......<<<<......>>>>.<<<...<<<<...<<<<<<<<....>>>>>>>>....>>>>..>>>.......>>>>>>. (((((((....(.((((......)))))(((...((((...((((((((....))))))))....))).).))).......))))))) crystal structure of glycine riboswitch, Tl-Acetate soaked; domain II of glycine riboswitch 3oxm B 88 2.95 RF00504 URS000080DF11_666 21145485 0006545 666 ggcucuggagagaaccguuuaaucggucgccgaaggagcaagcucugcggaaacgcagagugaaacucucaggcaaaaggacagagun <<<<<<<......<<<<......>>>>.<<<...<<<<...<<<<<<<<....>>>>>>>>....>>>.>.>>>.......>>>>>>> (((((((....(.((((......)))))(((...((((...((((((((....))))))))....))).).))).......))))))) crystal structure of glycine riboswitch, Tl-Acetate soaked; domain II of glycine riboswitch 3p49 A 169 3.55 RF00504 URS000080DF90_76857 21439473 0006545 76857 ggauaugaggagagauuucauccauugcacuccggaugaaacaccgaagaaguaaaucuuucagguaaaaaggacucauauuggacgaaccucuggagagcuuaucuaagagauaacaccgaaggagcaaagcuaauuuuagccuaaacucucagguaaaaggacggag .<<<<<<<<......<<<<<<<<..........>>>>>>>>.<<<...<<<<.....>>>.>.>>>........>>>>>>>>........<<<<<......<<<<<.....>>>>>.<<<...<<<<....<<<<....>>>>.....>>>>..>>>.......>>>>> .((((((((....(.((.(((((..........))))).)))(((....(((.....)))...)))........))))))))........(((((.......((((.....))))..(((...((((....(((......))).....))).).))).......))))) Crystal Structure of a Glycine Riboswitch from Fusobacterium nucleatum; GLYCINE RIBOSWITCH 3pdr X 161 1.853 RF00380 URS000080E29A_1423 21315082 0010468,0032026 1423 gggcuucguuaggugaggcuccuguauggagauacgcugcugcccaaaaauguccaaagacgccaaugggucaacagaaaucaucgacauaaggugauuuuuaaugcagcuggaugcuuguccuaugccauacagugcuaaagcucuacgauugaagccca <<<<<<<<<..<<<..<<<..<<<<<<<<......<<<<<.<<<<<....<<<<....>>>>....>>>>>.....<<<<<<<<<.......>>>>>>>>>....>>>>>.<<........>>....>>>>>>>>.>>>...>>>..>>....>>>>>>>. ((((((((([.(((..(((..((((((((......(((((((((((....((((....))))....))))).....(((((((((......])))))))))..).))))).((........))....)))))))).)))...)))..))....))))))). Crystal structure of manganese bound M-box RNA; M-box Riboswitch RNA 3pdr A 161 1.853 RF00380 URS000080E29A_1423 21315082 0010468,0032026 1423 gggcuucguuaggugaggcuccuguauggagauacgcugcugcccaaaaauguccaaagacgccaaugggucaacagaaaucaucgacauaaggugauuuuuaaugcagcuggaugcuuguccuaugccauacagugcuaaagcucuacgauugaagccca <<<<<<<<<..<<<..<<<..<<<<<<<<......<<<<<.<<<<<....<<<<....>>>>....>>>>>.....<<<<<<<<<.......>>>>>>>>>....>>>>>.<<........>>....>>>>>>>>.>>>...>>>..>>....>>>>>>>. ((((((((([.(((..(((..((((((((......(((((((((((.....(((....))).....))))).....(((((((((......])))))))))..).))))).((........))....)))))))).)))...)))..))....))))))). Crystal structure of manganese bound M-box RNA; M-box Riboswitch RNA 3pgw R 163 4.4 RF00003 URS000032B6B6_9606 21113136 0030627 0000395 0005685 9606 uacuuaccuggcaggggagauaccaugaucacgaaggugguuuucccagggcgaggcuuauccauugcacuccggaugugcugaccccugcgauuuccccaaaugugggaaacucgacugcauaauuugugguagugggggacugcguucgcgcuuuccccug ..........<<<<.<<<<<.<<<<<..........>>>>>>>>>><<<<<...<<<.<<<<<..........>>>>>.>>>..>>.>>><<<<<<<<.<....>.>>>>.>.>>>.>>>>................<<<<<..<<<....>>>..>>>>>.. ..........((((.(((...((((............))))..))).((.(....((..((((..........))))..))....).)).((((((((.........))))).))).))))................(((((..((......))..))))).. Crystal structure of human U1 snRNP; U1 snRNA 3pgw N 163 4.4 RF00003 URS000032B6B6_9606 21113136 0030627 0000395 0005685 9606 uacuuaccuggcaggggagauaccaugaucacgaaggugguuuucccagggcgaggcuuauccauugcacuccggaugugcugaccccugcgauuuccccaaaugugggaaacucgacugcauaauuugugguagugggggacugcguucgcgcuuuccccug ..........<<<<.<<<<<.<<<<<..........>>>>>>>>>><<<<<...<<<.<<<<<..........>>>>>.>>>..>>.>>><<<<<<<<.<....>.>>>>.>.>>>.>>>>................<<<<<..<<<....>>>..>>>>>.. ..........((((.(((...((((............))))..))).((.(....((..((((..........))))..))....).)).((((((((.........))))).))).))))................(((((..((......))..))))).. Crystal structure of human U1 snRNP; U1 snRNA 3q1q B 347 3.8 RF00010 URS000080E347_2336 21076397 3.1.26.5 0004526 0008033 0030680 2336 ggagaggagcaggcggucgcgggggcgcacaccugcgcuucccgaggaaaguccggacucuggagcggggugccggguaacgcccgggaggggugacccucggacagggccauagagaagaagaccgcccggggggaaacuuccgggcaaggguggaacggugggguaagagcccaccagcgucggggcaacccggcggcuuggcaacccccaccuggagcaaggccaagcaggggguugggucgcucccccuauucccccggguuggccgcuugaggugugcgguaacgcacaccccagauugaugaccgcccacgacagaauccggcuuaugcuccucucccgug <<<<<<<<<<..<<<<<<.<<<<<<<<<<....>>>>>.>>>>>.....{{.(((((((((<<<<<<<<<<<<<<<<.....>>>>><<<<<....>>>>><<...<<<<<.............<<<<<<<<<<<....>>>>>>>>>..>>.......<<<<<<.......>>>>>>.<<<<<<<<....>>>>>>>.>..>>>..>>>>>>>>>))))...[[[[.....(((((..(((.>>>>>>.)))...))))).....]]]]......<<<<<<<<....>>>>>>>>..........>>>>>>...........)))))}}...>>>>>>>>>>.... ((((((((((..((((((.((((((((((....))))).))))).{...[[.[[[[[(((([[[[[.((((((((((.....)))))(((((....)))))((...(((((.............(((((((((((....)))))))))..)).......((((((.......))))))(.(((((((....)))))))..).)))..)))))))))))))...((((.....(((((..(((..]]]]].)))...))))).....))))......((((((((....))))))))..........))))))......}....]]]]]]]...)))))))))).... Structure of a Bacterial Ribonuclease P Holoenzyme in Complex with tRNA; RNase P RNA 3q1q C 86 3.8 RF00005 URS000080DFE4_2336 21076397 0030533 0006412 2336 ggccagguagcucaguugguagagcacuggauaugggcacccccuaaguccaggugucggcgguucgauuccgccccuggccacca <<<<<<<..<<<<........>>>>.<<<<<<..<<<....>>>...>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).((((((..(((....)))...)))))).....(((((..]....)))))))))))).... Structure of a Bacterial Ribonuclease P Holoenzyme in Complex with tRNA; TRNA (PHE) 3q1r B 347 4.21 RF00010 URS000080E347_2336 21076397 3.1.26.5 0004526 0008033 0030680 2336 ggagaggagcaggcggucgcgggggcgcacaccugcgcuucccgaggaaaguccggacucuggagcggggugccggguaacgcccgggaggggugacccucggacagggccauagagaagaagaccgcccggggggaaacuuccgggcaaggguggaacggugggguaagagcccaccagcgucggggcaacccggcggcuuggcaacccccaccuggagcaaggccaagcaggggguugggucgcucccccuauucccccggguuggccgcuugaggugugcgguaacgcacaccccagauugaugaccgcccacgacagaauccggcuuaugcuccucucccgug <<<<<<<<<<..<<<<<<.<<<<<<<<<<....>>>>>.>>>>>.....{{.(((((((((<<<<<<<<<<<<<<<<.....>>>>><<<<<....>>>>><<...<<<<<.............<<<<<<<<<<<....>>>>>>>>>..>>.......<<<<<<.......>>>>>>.<<<<<<<<....>>>>>>>.>..>>>..>>>>>>>>>))))...[[[[.....(((((..(((.>>>>>>.)))...))))).....]]]]......<<<<<<<<....>>>>>>>>..........>>>>>>...........)))))}}...>>>>>>>>>>.... ((((((((((..((((((.((((((((((....))))).))))).{...[[.[[[[[(((([[[[[.((((((((((.....)))))(((((....)))))((...(((((.............(((((((((((....)))))))))..)).......((((((.......))))))(.(((((((....)))))))..).)))..)))))))))))))...((((.....(((((..(((..]]]]].)))...))))).....))))......((((((((....))))))))..........))))))......}....]]]]]]]...)))))))))).... Crystal structure of a bacterial RNase P holoenzyme in complex with TRNA and in the presence of 5' leader; RNase P RNA 3q1r C 86 4.21 RF00005 URS000080DFE4_2336 21076397 0030533 0006412 2336 ggccagguagcucaguugguagagcacuggauaugggcacccccuaaguccaggugucggcgguucgauuccgccccuggccacca <<<<<<<..<<<<........>>>>.<<<<<<..<<<....>>>...>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).((((((..(((....)))...)))))).....(((((..]....)))))))))))).... Crystal structure of a bacterial RNase P holoenzyme in complex with TRNA and in the presence of 5' leader; TRNA (PHE) 3q3z V 75 2.51 RF01786 URS000080E282_1488 21518891 0035438 0010468 1488 ncgcggaaacaaugaugaauggguuuaaauugggcacuugacucauuuugaguuaguagugcaaccgaccgugcu <<<<<<.<<<......<<<<<<<<<......[[(((((.>>>>>>>>>...>>>...)))))..]]..>>>>>>. ((((((..((......(((((((((.....{[[[[[[[.)))))))))...))....]]]]]}.]]..)))))). Structure of a c-di-GMP-II riboswitch from C. acetobutylicum bound to c-di-GMP; c-di-GMP-II riboswitch 3q3z A 75 2.51 RF01786 URS000080E282_1488 21518891 0035438 0010468 1488 ncgcggaaacaaugaugaauggguuuaaauugggcacuugacucauuuugaguuaguagugcaaccgaccgugcu <<<<<<.<<<......<<<<<<<<<......[[(((((.>>>>>>>>>...>>>...)))))..]]..>>>>>>. ((((((..((......(((((((((.....{[[[[[[[.)))))))))...))....]]]]]}.]]..)))))). Structure of a c-di-GMP-II riboswitch from C. acetobutylicum bound to c-di-GMP; c-di-GMP-II riboswitch 3qsy D 77 3.2 RF00005 URS00001BBAFC_562 23291527 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaagaucgucgguucaaauccggcccccgcaacca ...<<<<....<<.........>>.....<<<.......>>>.......<<<<<.......>>>>>>>>>....... ...((((....((.........)).....(((.......))).......(.(((.......))).)))))....... Recognition of the methionylated initiator tRNA by the translation initiation factor 2 in Archaea; tRNA 3rg5 A 86 2.0 RF01852,RF00005 URS0000624339_10090 21629646 0030533 0006412 10090 gcccggaugauccucaguggucuggggugcaggcuucaaaccuguagcuguuuagcgacagagugguucaauuccaccuuucgggc <<<<<<<....<<<<<<....>>>>>><<<<<<.......>>>>>>.<<<<<....>>>>>.<<<<.......>>>>..>>>>>>> (((((((.(..((((((..[.))))))((((((.......)))))).(((((....))))).((((..]....))))).))))))) Crystal Structure of Mouse tRNA(Sec); tRNA(Sec) 3rg5 B 86 2.0 RF01852,RF00005 URS0000624339_10090 21629646 0030533 0006412 10090 gcccggaugauccucaguggucuggggugcaggcuucaaaccuguagcuguuuagcgacagagugguucaauuccaccuuucgggc <<<<<<<....<<<<<<....>>>>>><<<<<<.......>>>>>>.<<<<<....>>>>>.<<<<.......>>>>..>>>>>>> (((((((.(..((((((..[.))))))((((((.......)))))).(((((....))))).((((..]....))))).))))))) Crystal Structure of Mouse tRNA(Sec); tRNA(Sec) 3rkf A 67 2.5 RF00167 URS000080DFAE_1423 21890900 0009113 1423 ggccauauaacugcguggauauagcacgcagguuucuaccgggcacuguaaauguccgacuaugguc .<<<<<<...<<<<<<<.....((>>>>>>>........<<<<<<)).....>>>>>>..>>>>>>. ((((((((..(((((((.....[[)))))))[.....)]((((((]].....))))))..))))))) Crystal structure of guanine riboswitch C61U/G37A double mutant bound to thio-guanine; Guanine riboswitch 3rkf B 67 2.5 RF00167 URS000080DFAE_1423 21890900 0009113 1423 ggccauauaacugcguggauauagcacgcagguuucuaccgggcacuguaaauguccgacuaugguc .<<<<<<...<<<<<<<.....((>>>>>>>........<<<<<<)).....>>>>>>..>>>>>>. ((((((((..(((((((.....[[)))))))[.....)]((((((]].....))))))..))))))) Crystal structure of guanine riboswitch C61U/G37A double mutant bound to thio-guanine; Guanine riboswitch 3rkf C 67 2.5 RF00167 URS000080DFAE_1423 21890900 0009113 1423 ggccauauaacugcguggauauagcacgcagguuucuaccgggcacuguaaauguccgacuaugguc .<<<<<<...<<<<<<<.....((>>>>>>>........<<<<<<)).....>>>>>>..>>>>>>. ((((((((..(((((((.....[[)))))))[.....)]((((((]].....))))))..))))))) Crystal structure of guanine riboswitch C61U/G37A double mutant bound to thio-guanine; Guanine riboswitch 3rkf D 67 2.5 RF00167 URS000080DFAE_1423 21890900 0009113 1423 ggccauauaacugcguggauauagcacgcagguuucuaccgggcacuguaaauguccgacuaugguc .<<<<<<...<<<<<<<.....((>>>>>>>........<<<<<<)).....>>>>>>..>>>>>>. ((((((((..(((((((.....[[)))))))[.....)]((((((]].....))))))..))))))) Crystal structure of guanine riboswitch C61U/G37A double mutant bound to thio-guanine; Guanine riboswitch 3sd3 A 89 1.95 RF01831 URS000080DFDF_1309 21906956 0046653 1309 ggagaguagaugauucgcguuaagcgugugugaaugggaugucgucacacaacgaagcgagagcgcggugaaucauugcauccgcucca <<<<....<<<<<<<<<<<<....<<<<<<<<<.<.(((((..>>>>>>>>.>>..<<....>>>>>.>>>>>>>>>.))))).>>>>. ((((....((((((((((((......(((((((...[[[[[...))))))).....((....))))).))))))))).]]]]].)))). The structure of the tetrahydrofolate riboswitch containing a U25C mutation; Tetrahydrofolate riboswitch 3ski A 68 2.3 RF01510 URS000080DE91_2151 21841796 0032546 0031554 2151 ngccuuauacaggguagcauaaugggcuacugaccccgccuucaaaccuauuuggagacuauaaggun <<<<<<<<<...<<<<<<.....((>>>>>>........<<<<<<<))..>>>>>>>..>>>>>>>>> ((((((((((..((((((.....[[))))))[.....)](((((((]]..)))))))..))))))))) Crystal structure of the 2'- Deoxyguanosine riboswitch bound to 2'-deoxyguanosine; RNA (68-MER) 3ski B 68 2.3 RF01510 URS000080DE91_2151 21841796 0032546 0031554 2151 ggccuuauacaggguagcauaaugggcuacugaccccgccuucaaaccuauuuggagacuauaaggun <<<<<<<<<...<<<<<<.....((>>>>>>........<<<<<<<))..>>>>>>>..>>>>>>>>> ((((((((((..((((((.....[[))))))[.....)](((((((]]..)))))))..))))))))) Crystal structure of the 2'- Deoxyguanosine riboswitch bound to 2'-deoxyguanosine; RNA (68-MER) 3skl A 66 2.9 RF01510 URS000080DEBE_2151 21841796 0032546 0031554 2151 ngcuuauacaggguagcauaaugggcuacugaccccgccuucaaaccuauuuggagacuauaagun .<<<<<<<...<<<<<<.....((>>>>>>........<<<<<<<))..>>>>>>>..>>>>>>>. (((((((((..((((((.....[[))))))[.....)](((((((]]..)))))))..)))))))) Crystal structure of the 2'- deoxyguanosine riboswitch bound to 2'-deoxyguanosine, iridium hexammine soak; RNA (66-MER) 3skl B 66 2.9 RF01510 URS000080DEBE_2151 21841796 0032546 0031554 2151 ngcuuauacaggguagcauaaugggcuacugaccccgccuucaaaccuauuuggagacuauaagun <<<<<<<<...<<<<<<.....((>>>>>>........<<<<<<<))..>>>>>>>..>>>>>>>> (((((((((..((((((.....[[))))))[.....)](((((((]]..)))))))..)))))))) Crystal structure of the 2'- deoxyguanosine riboswitch bound to 2'-deoxyguanosine, iridium hexammine soak; RNA (66-MER) 3skr A 66 3.1 RF01510 URS000080DEBE_2151 21841796 0032546 0031554 2151 ngcuuauacaggguagcauaaugggcuacugaccccgccuucaaaccuauuuggagacuauaagun .<<<<<<<...<<<<<<.....((>>>>>>........<<<<<<<))..>>>>>>>..>>>>>>>. (((((((((..((((((.....[[))))))[.....)](((((((]]..)))))))..)))))))) Crystal structure of the 2'- Deoxyguanosine riboswitch bound to 2'- Deoxyguanosine, cobalt Hexammine soak; RNA (66-MER) 3skr B 66 3.1 RF01510 URS000080DEBE_2151 21841796 0032546 0031554 2151 ngcuuauacaggguagcauaaugggcuacugaccccgccuucaaaccuauuuggagacuauaagun .<<<<<<<...<<<<<<.....((>>>>>>........<<<<<<<))..>>>>>>>..>>>>>>>. (((((((((..((((((.....[[))))))[.....)](((((((]]..)))))))..)))))))) Crystal structure of the 2'- Deoxyguanosine riboswitch bound to 2'- Deoxyguanosine, cobalt Hexammine soak; RNA (66-MER) 3skt A 66 3.1 RF01510 URS000080DEBE_2151 21841796 0032546 0031554 2151 ngcuuauacaggguagcauaaugggcuacugaccccgccuucaaaccuauuuggagacuauaagun .<<<<<<<...<<<<<<.....((>>>>>>........<<<<<<<))..>>>>>>>..>>>>>>>. (((((((((..((((((.....[[))))))[.....)](((((((]]..)))))))..)))))))) Crystal structure of the 2'- Deoxyguanosine riboswitch bound to 2'- Deoxyguanosine, manganese Soak; RNA (66-MER) 3skt B 66 3.1 RF01510 URS000080DEBE_2151 21841796 0032546 0031554 2151 ngcuuauacaggguagcauaaugggcuacugaccccgccuucaaaccuauuuggagacuauaagun .<<<<<<<...<<<<<<.....((>>>>>>........<<<<<<<))..>>>>>>>..>>>>>>>. (((((((((..((((((.....[[))))))[.....)](((((((]]..)))))))..)))))))) Crystal structure of the 2'- Deoxyguanosine riboswitch bound to 2'- Deoxyguanosine, manganese Soak; RNA (66-MER) 3skw A 66 2.95 RF01510 URS000080DEBE_2151 21841796 0032546 0031554 2151 ngcuuauacaggguagcauaaugggcuacugaccccgccuucaaaccuauuuggagacuauaagun <<<<<<<<...<<<<<<.....((>>>>>>........<<<<<<<))..>>>>>>>..>>>>>>>> (((((((((..((((((.....[[))))))[.....)](((((((]]..)))))))..)))))))) Crystal structure of the 2'- Deoxyguanosine riboswitch bound to 2'- Deoxyguanosine, cesium soak; RNA (66-MER) 3skw B 66 2.95 RF01510 URS000080DEBE_2151 21841796 0032546 0031554 2151 ngcuuauacaggguagcauaaugggcuacugaccccgccuucaaaccuauuuggagacuauaagun <<<<<<<<...<<<<<<.......>>>>>>........<<<<<<......>>>>>>..>>>>>>>> (((((((((..((((((.....[[))))))[.....)](((((..]]....)))))..)))))))) Crystal structure of the 2'- Deoxyguanosine riboswitch bound to 2'- Deoxyguanosine, cesium soak; RNA (66-MER) 3skz A 68 2.605 RF01510 URS000080DE91_2151 21841796 0032546 0031554 2151 ngccuuauacaggguagcauaaugggcuacugaccccgccuucaaaccuauuuggagacuauaaggun <<<<<<<<<...<<<<<<.....((>>>>>>........<<<<<<<))..>>>>>>>..>>>>>>>>> ((((((((((..((((((.....[[))))))[.....)](((((((]]..)))))))..))))))))) Crystal structure of the 2'- deoxyguanosine riboswitch bound to guanosine; RNA (68-MER) 3skz B 68 2.605 RF01510 URS000080DE91_2151 21841796 0032546 0031554 2151 ngccuuauacaggguagcauaaugggcuacugaccccgccuucaaaccuauuuggagacuauaaggun <<<<<<<<<...<<<<<<.....((>>>>>>........<<<<<<<))..>>>>>>>..>>>>>>>>> ((((((((((..((((((.....[[))))))[.....)](((((((]]..)))))))..))))))))) Crystal structure of the 2'- deoxyguanosine riboswitch bound to guanosine; RNA (68-MER) 3slm A 68 2.7 RF01510 URS000080DE91_2151 21841796 0032546 0031554 2151 ngccuuauacaggguagcauaaugggcuacugaccccgccuucaaaccuauuuggagacuauaaggun <<<<<<<<<...<<<<<<.....<<>>>>>>........<<<<<<.>>...>>>>>>..>>>>>>>>> ((((((((((..((((((.....[[))))))[.....)](((((((]]..)))))))..))))))))) Crystal structure of the 2'- Deoxyguanosine riboswitch bound to 2'-deoxyguanosine-5'-monophosphate; RNA (68-MER) 3slm B 68 2.7 RF01510 URS000080DE91_2151 21841796 0032546 0031554 2151 ngccuuauacaggguagcauaaugggcuacugaccccgccuucaaaccuauuuggagacuauaaggun <<<<<<<<<...<<<<<<.....((>>>>>>........<<<<<<<))..>>>>>>>..>>>>>>>>> ((((((((((..((((((.....[[))))))[.....)](((((((]]..)))))))..))))))))) Crystal structure of the 2'- Deoxyguanosine riboswitch bound to 2'-deoxyguanosine-5'-monophosphate; RNA (68-MER) 3slq A 68 2.5 RF01510 URS000080DE91_2151 21841796 0032546 0031554 2151 ngccuuauacaggguagcauaaugggcuacugaccccgccuucaaaccuauuuggagacuauaaggun <<<<<<<<<...<<<<<<.....((>>>>>>........<<<<<<<))..>>>>>>>..>>>>>>>>> ((((((((((..((((((.....[[))))))[.....)](((((((]]..)))))))..))))))))) Crystal structure of the 2'- Deoxyguanosine riboswitch bound to guanosine-5'-monophosphate; RNA (68-MER) 3slq B 68 2.5 RF01510 URS000080DE91_2151 21841796 0032546 0031554 2151 ngccuuauacaggguagcauaaugggcuacugaccccgccuucaaaccuauuuggagacuauaaggun <<<<<<<<<...<<<<<<.....((>>>>>>........<<<<<<<))..>>>>>>>..>>>>>>>>> ((((((((((..((((((.....[[))))))[.....)](((((((]]..)))))))..))))))))) Crystal structure of the 2'- Deoxyguanosine riboswitch bound to guanosine-5'-monophosphate; RNA (68-MER) 3sn2 B 29 2.99 RF02253 URS000080E231_9986 22119729,17185597 0010039 9986 gauuaucggaagcagugccuuccauaauc <<<<<<.<<<<<......>>>>>>>>>>> ((((((.((((((...).))))))))))) Crystal structure analysis of iron regulatory protein 1 in complex with transferrin receptor IRE B RNA; transferrin receptor iron regulatory element B RNA 3snp C 30 2.8 RF00037 URS000080E11E_8355 17185597,16511314 0010039 8355 guucuugcuucaacaguguuugaacggaac <<<<<.<.<<<<<......>>>>>>>>>>> (((((.(.((((((...).))))))))))) Crystal structure analysis of iron regulatory protein 1 in complex with ferritin H IRE RNA; ferritin H IRE RNA 3snp D 30 2.8 RF00037 URS000080E11E_8355 17185597,16511314 0010039 8355 guucuugcuucaacaguguuugaacggaac <<<<<.<.<<<<<......>>>>>>>>>>> (((((.(.((((((...).))))))))))) Crystal structure analysis of iron regulatory protein 1 in complex with ferritin H IRE RNA; ferritin H IRE RNA 3suh X 101 2.65 RF01831 URS000080DEF0_717961 21873197 0046653 717961 ggacagaguagguaaacgugcguaaagugccugagggacggggaguuguccucaggacgaacaccgaaagguggcgguacguuuaccgcaucucgcuguun ..........<<<<<<<<<<<<<....<<<<<<<<<<...((((....>>>>>>>>.>>..<<<<....>>>>>>>.>>>>>>>>>>...))))....... ..........(((((((((((((......(((((((((..[[[[..).)))))))).....((((....))))))).))))))))))...]]]]....... Crystal structure of THF riboswitch, bound with 5-formyl-THF; Riboswitch 3sux X 101 2.9 RF01831 URS000080DEF0_717961 21873197 0046653 717961 ggacagaguagguaaacgugcguaaagugccugagggacggggaguuguccucaggacgaacaccgaaagguggcgguacguuuaccgcaucucgcuguun ..........<<<<<<<<<<<<<....<<<<<<<<<<...((((....>>>>>>>>.>>..<<<<....>>>>>>>.>>>>>>>>>>...))))....... ..........(((((((((((((......(((((((((..[[[[..).)))))))).....((((....))))))).))))))))))...]]]]....... Crystal structure of THF riboswitch, bound with THF; Riboswitch 3suy X 101 3.21 RF01831 URS000080DEF0_717961 21873197 0046653 717961 ggacagaguagguaaacgugcguaaagugccugagggacggggaguuguccucaggacgaacaccgaaagguggcgguacguuuaccgcaucucgcuguun ..........<<<<<<<<<<<<<....<<<<<<<<<<...((((....>>>>>>>>.>>..<<<<....>>>>>>>.>>>>>>>>>>...))))....... ..........(((((((((((((......(((((((((..[[[[..).)))))))).....((((....))))))).))))))))))...]]]]....... Crystal structure of THF riboswitch, unbound status; riboswitch 3tra A 72 3.0 RF00005 URS00005AD0B9_4932 3272146 0030533 0006412 4932 uccgugauaguuuaanggncagaaugggcgcuugucncgugccagaunggggnucaauuccccgucgcggag <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>....<<<<<.......>>>>>>>>>>>>. (((((((..(((..........))).(((((.......)))))....(((((.......)))))))))))). RESTRAINED REFINEMENT OF TWO CRYSTALLINE FORMS OF YEAST ASPARTIC ACID AND PHENYLALANINE TRANSFER RNA CRYSTALS; TRNAASP 3tup T 74 3.05 RF00005 URS000080DF1A_274 22137894 0030533 0006412 274 gccgagguagcucaguugguagagcaugcgacugaaaaucgcagugucggcgguucgauucugcuccucggcac <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.. (((((((..((((.....[..)))).(((((.......)))))......((.(..]....).)).))))))).. Crystal structure of human mitochondrial PheRS complexed with tRNAPhe in the active open state; Thermus thermophilus tRNAPhe 3v11 D 76 5.0 RF00005 URS00001BBAFC_562 22447243 0030533 0006412 562 gcggggnggagcagccuggnagcucgucgggnucauaacccgaagaucgucggnucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>......<<<<.......>>>>.>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Structure of the ternary initiation complex AIF2:GDPNP:methionylated initiator TRNA; Initiator tRNA 3v7e C 126 2.8 RF00162 URS000080E09F_119072 22355167 0010468 119072 ggcuuaucaagagagguggagggacuggcccgaugaaacccggcaaccacuagucuagcgucagcuucggcugacgcuaggcuaguggugccaauuccugcagcggaaacguugaaagaugagcca <<<<<<<<......<<<...<<<...((>>>......>>>.<<<<.<<<<<<<<<<<<<<<<<<<....>>>>>>>>>>>>>>>>>>>>>>>....))..<<<<<....>>>>>...>>>>>>>>. ((((((((....(.(((...(((.[.[[)))......))))(((..(((((((((((((((((((....))))))))))))))))))).)))...(]].](((((....)))))..))))))))). Crystal structure of YbxF bound to the SAM-I riboswitch aptamer; SAM-I riboswitch aptamer with an engineered helix P3 3v7e D 126 2.8 RF00162 URS000080E09F_119072 22355167 0010468 119072 ggcuuaucaagagagguggagggacuggcccgaugaaacccggcaaccacuagucuagcgucagcuucggcugacgcuaggcuaguggugccaauuccugcagcggaaacguugaaagaugagcca <<<<<<<<......<<<...<<<...((>>>......>>>.<<<<.<<<<<<<<<<<<<<<<<<<....>>>>>>>>>>>>>>>>>>>>>>>....))..<<<<<....>>>>>...>>>>>>>>. ((((((((....(.(((...(((.[.[[)))......))))(((..(((((((((((((((((.(....).))))))))))))))))).)))...(]].](((((....)))))..))))))))). Crystal structure of YbxF bound to the SAM-I riboswitch aptamer; SAM-I riboswitch aptamer with an engineered helix P3 3vrs A 52 2.603 RF01734 URS000080E2F0_93929 22678284 0010628,1902617 93929 gggcgaugaggcccgcccaaacugcccugaaaagggcugauggccucuacug .((((..<<<<<<))))......<<<<<....>>>>>....>>>>>>..... .[[[[..((((((]]]]......(((((....)))))....))))))..... Crystal structure of fluoride riboswitch, soaked in Mn2+; Fluoride riboswitch 3w1k F 92 7.5 RF01852 URS000018CF94_273068 23559248 0030533 0006412 273068 gggaguagauaggcgcuggugugccuccuagacuucaaaucuacggucucgcuauuuaagcgagagguggguucgauucccacauacucccg <<<<<<<...<<<<<......>>>>><<<<<<.......>>>>.>><<<<<<<.....>>>>>>>.<<<<<.......>>>>>.>>>>>>>. (((((((...((((((..[.))))))((((((.......)))).))(((((((.....))))))).(((((..]....))))).))))))). Crystal structure of the selenocysteine synthase SelA and tRNASec complex; selenocysteine tRNA 3w1k G 92 7.5 RF01852 URS000018CF94_273068 23559248 0030533 0006412 273068 gggaguagauaggcgcuggugugccuccuagacuucaaaucuacggucucgcuauuuaagcgagagguggguucgauucccacauacucccg <<<<<<<...<<<<<......>>>>><<<<<<.......>>>>.>><<<<<<<.....>>>>>>>.<<<<<.......>>>>>.>>>>>>>. (((((((...((((((..[.))))))((((((.......)))).))(((((((.....))))))).(((((..]....))))).))))))). Crystal structure of the selenocysteine synthase SelA and tRNASec complex; selenocysteine tRNA 3w1k H 92 7.5 RF01852 URS000018CF94_273068 23559248 0030533 0006412 273068 gggaguagauaggcgcuggugugccuccuagacuucaaaucuacggucucgcuauuuaagcgagagguggguucgauucccacauacucccg <<<<<<<...<<<<<......>>>>><<<<<<.......>>>>.>><<<<<<<.....>>>>>>>.<<<<<.......>>>>>.>>>>>>>. (((((((...((((((..[.))))))((((((.......)))).))(((((((.....))))))).(((((..]....))))).))))))). Crystal structure of the selenocysteine synthase SelA and tRNASec complex; selenocysteine tRNA 3w1k I 92 7.5 RF01852 URS000018CF94_273068 23559248 0030533 0006412 273068 gggaguagauaggcgcuggugugccuccuagacuucaaaucuacggucucgcuauuuaagcgagagguggguucgauucccacauacucccg <<<<<<<...<<<<<......>>>>><<<<<<.......>>>>.>><<<<<<<.....>>>>>>>.<<<<<.......>>>>>.>>>>>>>. (((((((...((((((..[.))))))((((((.......)))).))(((((((.....))))))).(((((..]....))))).))))))). Crystal structure of the selenocysteine synthase SelA and tRNASec complex; selenocysteine tRNA 3w1k J 92 7.5 RF01852 URS000018CF94_273068 23559248 0030533 0006412 273068 gggaguagauaggcgcuggugugccuccuagacuucaaaucuacggucucgcuauuuaagcgagagguggguucgauucccacauacucccg <<<<<<<...<<<<<......>>>>><<<<<<.......>>>>.>><<<<<<<.....>>>>>>>.<<<<<.......>>>>>.>>>>>>>. (((((((...((((((..[.))))))((((((.......)))).))(((((((.....))))))).(((((..]....))))).))))))). Crystal structure of the selenocysteine synthase SelA and tRNASec complex; selenocysteine tRNA 3w3s B 98 3.095 RF01852,RF00005 URS000080E0B2_224324 23649835 0030533 0006412 224324 gggagagguuggccggcuggugccgccccgggacuucaaaucccgugggaggucccgcaagggagcuccggaggguucgauucccucccucucccgcc <<<<<<<<..<<.<<<<....>>>>>>.<<<<<.......>>>>>..<<<<.<<<<....>>>>.>>>>.<<<<<.......>>>>>>>>>>>>>... ((((((((..((.((((..[.))))))((((((.......))))).)((((.((((....)))).)))).(((((..]....)))))))))))))... Crystal structure of A. aeolicus tRNASec in complex with M. kandleri SerRS; selenocysteine tRNA 3wc1 P 73 4.18 RF00005 URS000080E250_5476 24324136 0030533 0006412 5476 gccaucauaguauaguggucauuauaaaucguuguggccgauuagacccaaguucgauucuuggugauggcac <<<<<<<..<<<..........>>>.<<<<<.......>>>>>....<<<<<.......>>>>>>>>>>>>.. (((((((..(((..........))).(((((.......)))))....(((((.......)))))))))))).. Crystal structure of C. albicans tRNA(His) guanylyltransferase (Thg1) with a G-1 deleted tRNA(His); 75-mer tRNA 3wc1 Q 73 4.18 RF00005 URS000080E250_5476 24324136 0030533 0006412 5476 gccaucauaguauaguggucauuauaaaucguuguggccgauuagacccaaguucgauucuuggugauggcac <<<<<<<..<<<..........>>>.<<<<<.......>>>>>....<<<<<.......>>>>>>>>>>>>.. (((((((..(((..........))).(((((.......)))))....(((((.......)))))))))))).. Crystal structure of C. albicans tRNA(His) guanylyltransferase (Thg1) with a G-1 deleted tRNA(His); 75-mer tRNA 3wc2 P 74 3.641 RF00005 URS000080DEBB_4932 24324136 0030533 0006412 4932 gcggauuuagcucaguugggagagcgccagacuguggaucuggagguccuguguucgauccacagaauucgcac <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.. (((((((..((((.....[..)))).(((((.......))))).....(((((..]....)))))))))))).. Crystal structure of C. albicans tRNA(His) guanylyltransferase (Thg1) with a tRNA(Phe)(GUG); 76mer-tRNA 3wc2 Q 73 3.641 RF00005 URS000080DEBB_4932 24324136 0030533 0006412 4932 gcggauuuagcucaguugggagagcgccagacuguggaucuggagguccuguguucgauccacagaauucgca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>. (((((((..((((.....[..))))..(((.........)))......(((((..]....)))))))))))). Crystal structure of C. albicans tRNA(His) guanylyltransferase (Thg1) with a tRNA(Phe)(GUG); 76mer-tRNA 3wfq A 73 3.619 RF00005 URS0000206B95_243274 24389024 0030533 0006412 243274 ggccagguagcucaguugguagagcacuggacugaaaauccaggugucggcgguucgauuccgccccuggcca <<<<<<<...................<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>. (((((((.....(.....[..)....(((((.......))))).....(((((..]....)))))))))))). tRNA processing enzyme complex 1; RNA (73-MER) 3wfq B 73 3.619 RF00005 URS0000206B95_243274 24389024 0030533 0006412 243274 ggccagguagcucaguugguagagcacuggacugaaaauccaggugucggcgguucgauuccgccccuggcca <<<<<<<...................<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>. (((((((....(......[....)..(((((.......))))).....(((((..]....)))))))))))). tRNA processing enzyme complex 1; RNA (73-MER) 3wfq C 73 3.619 RF00005 URS0000206B95_243274 24389024 0030533 0006412 243274 ggccagguagcucaguugguagagcacuggacugaaaauccaggugucggcgguucgauuccgccccuggcca <<<<<<<...................<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>. (((((((....((.....[..).)..(((((.......))))).....(((((..]....)))))))))))). tRNA processing enzyme complex 1; RNA (73-MER) 3wfq D 73 3.619 RF00005 URS0000206B95_243274 24389024 0030533 0006412 243274 ggccagguagcucaguugguagagcacuggacugaaaauccaggugucggcgguucgauuccgccccuggcca <<<<<<<...................<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>. (((((((....(......[....)..(((((.......))))).....(((((..]....)))))))))))). tRNA processing enzyme complex 1; RNA (73-MER) 3wfr A 74 3.501 RF00005 URS000080DF16_243274 24389024 0030533 0006412 243274 ggccagguagcucaguugguagagcacuggacugaaaauccaggugucggcgguucgauuccgccccuggccac <<<<<<<...................<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.. (((((((....(......[....)..(((((.......))))).....(((((..]....)))))))))))).. tRNA processing enzyme complex 2; RNA (74-MER) 3wfr B 74 3.501 RF00005 URS000080DF16_243274 24389024 0030533 0006412 243274 ggccagguagcucaguugguagagcacuggacugaaaauccaggugucggcgguucgauuccgccccuggccac <<<<<<<....<...........>..<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.. (((((((....((.....[..).)..(((((.......))))).....(((((..]....)))))))))))).. tRNA processing enzyme complex 2; RNA (74-MER) 3wfr C 75 3.501 RF00005 URS000080DFBA_243274 24389024 0030533 0006412 243274 ggccagguagcucaguugguagagcacuggacugaaaauccaggugucggcgguucgauuccgccccuggccacc <<<<<<<....<..........>...<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>... (((((((....((.....[..).)..(((((.......))))).....(((((..]....))))))))))))... tRNA processing enzyme complex 2; RNA (75-MER) 3wfr D 75 3.501 RF00005 URS000080DFBA_243274 24389024 0030533 0006412 243274 ggccagguagcucaguugguagagcacuggacugaaaauccaggugucggcgguucgauuccgccccuggccacc <<<<<<<....<...........>..<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>... (((((((....(......[....)..(((((.......))))).....(((((..]....))))))))))))... tRNA processing enzyme complex 2; RNA (75-MER) 3wfs A 74 3.311 RF00005 URS000080DF16_243274 24389024 0030533 0006412 243274 ggccagguagcucaguugguagagcacuggacugaaaauccaggugucggcgguucgauuccgccccuggccac <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.. (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))).. tRNA processing enzyme complex 3; RNA (74-MER) 3wfs B 74 3.311 RF00005 URS000080DF16_243274 24389024 0030533 0006412 243274 ggccagguagcucaguugguagagcacuggacugaaaauccaggugucggcgguucgauuccgccccuggccac <<<<<<<..<<<<........>>>>.<<<<.........>>>>.....<<<<<.......>>>>>>>>>>>>.. (((((((..((((.....[..)))).((((.........)))).....(((((..]....)))))))))))).. tRNA processing enzyme complex 3; RNA (74-MER) 3wqy C 75 3.3 RF00005 URS000080DDFF_224325 24919148 0030533 0006412 224325 gggcucguagcucagcgggagagcgccgccuuugcgaggcggaggccgcggguucaaaucccgccgaguccacca <<<<<<<..<<<<.......>>>>.<<<<<<<...>>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((....[..)))).((((((.....)))))).....(((((..]....)))))))))))).... Crystal structure of Archaeoglobus fulgidus alanyl-tRNA synthetase in complex with wild-type tRNA(Ala) having G3.U70; RNA (75-MER) 3wqz C 75 3.489 RF00005 URS000080DD8C_224325 24919148 0030533 0006412 224325 ggacucguagcucagcgggagagcgccgccuuugcgaggcggaggccgcggguucaaaucccgccgaguccacca <<<<<<<..<<<<.......>>>>.<<<<<<<...>>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((....[..)))).(((((((...))))))).....(((((..]....)))))))))))).... Crystal structure of Archaeoglobus fulgidus alanyl-tRNA synthetase in complex with a tRNA(Ala) variant having A3.U70; RNA (75-MER) 3zgz B 82 2.4 RF00005 URS000080E2F8_83333 23361008 0030533 0006412 83333 ggcccggaugguggaaucgguagacacaagggauucccucggcguucgcgcugugcggguucaagucccgcuccgggcacca .<<<<<<<..<<<...........>>>.<<<<<.>>>>>.<<<<<..>>>>>..<<<<<.......>>>>>>>>>>>>.... .(((((((..(((......[....))).(((((.))))).((((....))))..(((((..]....)))))))))))).... Ternary complex of E. coli leucyl-tRNA synthetase, tRNA(leu) and toxic moiety from agrocin 84 (TM84) in aminoacylation-like conformation; TRNA-LEU UAA ISOACCEPTOR 3zgz E 80 2.4 RF00005 URS000080E2F8_83333 23361008 0030533 0006412 83333 ggcccggaugguggaaucgguagacacaagggauucccucggcgcgcgcugugcggguucaagucccgcuccgggcacca .<<<<<<<..<<<...........>>>.<<<<<.>>>>>.<<<<..>>>>..<<<<<.......>>>>>>>>>>>>.... .(((((((..(((......[....))).(((((.))))).((((..))))..(((((..]....)))))))))))).... Ternary complex of E. coli leucyl-tRNA synthetase, tRNA(leu) and toxic moiety from agrocin 84 (TM84) in aminoacylation-like conformation; TRNA-LEU UAA ISOACCEPTOR 3zjt B 83 2.2 RF00005 URS000080E2E3_83333 23295920 0030533 0006412 83333 ggcccggaugguggaaucgguagacacaaggggaaucccucggcguucgcgcugugcggguucaagucccgcuccggguaccn .<<<<<<<..<<<...........>>>..<<<.....>>>.<<<<....>>>>..<<<<<.......>>>>>>>>>>>>.... .(((((((..(((......[....))).(..(....)..).((((....))))..(((((..]....)))))))))))).... Ternary complex of E.coli leucyl-tRNA synthetase, tRNA(Leu)574 and the benzoxaborole AN3017 in the editing conformation; TRNALEU5 UAA ISOACCEPTOR 3zju B 80 2.4 RF00005 URS000080E2A7_83333 23295920 0030533 0006412 83333 gcccggaugguggaaucgguagacacaagggaucccucggcguucgcgcugugcggguucaagucccgcuccggguaccn <<<<<<<..<<<...........>>>.<<.<..>.>>.<<<<....>>>>..<<<<<.......>>>>>>>>>>>>.... (((((((..(((......[....))).((.(..).)).((((....))))..(((((..]....)))))))))))).... Ternary complex of E .coli leucyl-tRNA synthetase, tRNA(Leu) and the benzoxaborole AN3016 in the editing conformation; TRNALEU5 UAA ISOACCEPTOR 3zjv B 85 2.31 RF00005 URS000080E2A7_83333 23295920 0030533 0006412 83333 gcccggaugguggaaucgguagacacaagggauuaaaucccucggcguucgcgcugugcggguucaagucccgcuccggguaccn <<<<<<<..<<<...........>>>.<<<<<<...>>>>>>.<<<<<..>>>>>..<<<<<.......>>>>>>>>>>>>.... (((((((..(((......[....))).(((((.....))))).((((....))))..(((((..]....)))))))))))).... Ternary complex of E .coli leucyl-tRNA synthetase, tRNA(Leu) and the benzoxaborole AN3213 in the editing conformation; TRNALEU5 UAA ISOACCEPTOR 3zn8 G 88 12.0 RF00169 URS000080E1CF_562 23563142 0006617 0048501 562 uggugcagcgcagcgcggacgcccgaaccuggucagagccggaaggcagcagccauaagggaugcuuugcgggugccguugccuuccg <<<.<.....<<.<<<<<.<<<<<.....<<<<..<.<<......>>..>.>>>>...>>>.>>..>>>>>..>>.......>..>>> ....((.......(((((.(.(((......(((....((......))....)))....)))..)..))))).........).)..... Structural Basis of Signal Sequence Surveillance and Selection by the SRP-SR Complex; 4.5 S RNA 486d A 74 7.5 RF00005 URS000080E131_562 10497122 0030533 0006412 562 uccgugauaguuuaanggncagaaunccaganugaanaunuggagaunggggnucaauuccccgucgcggagcc <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>....<<<<<.......>>>>>>>>>>>>... (((((((..(((..........))).((((.........))))....(((((.......))))))))))))... X-RAY CRYSTAL STRUCTURES OF 70S RIBOSOME FUNCTIONAL COMPLEXES; P-SITE TRNA OF 70S RIBOSOME 486d E 72 7.5 RF00005 URS000027E1E5_274 10497122 0030533 0006412 274 uccgugauaguuuaanggncagaaugggcgcuugucncgugccagaunggggnucaauuccccgucgcggag <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>....<<<<<.......>>>>>>>>>>>>. (((((((..(((..........))).(((((.......)))))....(((((.......)))))))))))). X-RAY CRYSTAL STRUCTURES OF 70S RIBOSOME FUNCTIONAL COMPLEXES; E-SITE TRNA OF 70S RIBOSOME 4aob A 94 2.95 RF00162 URS000080DF6B_119072 22539525 0010468 119072 ggcuuaucaagagagggcaagagacuggcuugaugacccccggcaaccaaaaauggugccaauuccugcagaggaaacguugaaagaugagcca <<<<<<<<......<<<...<<<...((>>>......>>>.<<<<.<<<....>>>>>>>....))..<<<.<....>.>>>...>>>>>>>>. ((((((((....(.(((...(((.[.[[)))......))))(((..(((....))).)))...(]].](((.(....).)))..))))))))). SAM-I riboswitch containing the T. solenopsae Kt-23 in complex with S- adenosyl methionine; SAM-I RIBOSWITCH 4aq7 B 79 2.5 RF00005 URS00005ABD4E_83333 22683997 0030533 0006412 83333 gcccggaugguggaaucgguagacacaagggauucccucggcgcgcgcugugcggguucaagucccgcuccggguacca <<<<<<<..<<<...........>>>.<<<<<.>>>>>.<<<<..>>>>..<<<<<.......>>>>>>>>>>>>.... (((((((..(((......[....))).(((((.))))).((((..))))..(((((..]....)))))))))))).... Ternary complex of E. coli leucyl-tRNA synthetase, tRNA(leu) and leucyl-adenylate analogue in the aminoacylation conformation; E. COLI TRNALEU UAA ISOACCEPTOR 4aq7 E 77 2.5 RF00005 URS00005ABD4E_83333 22683997 0030533 0006412 83333 gcccggaugguggaaucgguagacacaagggauucccucggcgcgcugugcggguucaagucccgcuccggguacca <<<<<<<..<<<...........>>>.<<<<...>>>>.<<<..>>>..<<<<<.......>>>>>>>>>>>>.... (((((((..(((......[....))).(((((.))))).(((..)))..(((((..]....)))))))))))).... Ternary complex of E. coli leucyl-tRNA synthetase, tRNA(leu) and leucyl-adenylate analogue in the aminoacylation conformation; E. COLI TRNALEU UAA ISOACCEPTOR 4arc B 71 2.0 RF00005 URS00005ABD4E_83333 22683997 0030533 0006412 83333 ggaugguggaaucgguagacacaagggaucccucggcguucgcgcugugcggguucaagucccgcucccca <<<..<<<...........>>>..<<<..>.>>.<<<<....>>>>..<<<<<.......>>>>>>>>... (((..(((......[....))).((.(()).)).((((....))))..(((((..]....))))))))... Ternary complex of E. coli leucyl-tRNA synthetase, tRNA(leu) and leucine in the editing conformation; TRNA-LEU5 (UAA ISOACCEPTOR) 4ari B 80 2.08 RF00005 URS00005ABD4E_83333 22683997 0030533 0006412 83333 gcccggaugguggaaucgguagacacaagggaucccucggcguucgcgcugugcggguucaagucccgcuccggguaccn <<<<<<<..<<<...........>>>.<<.<..>.>>.<<<<....>>>>..<<<<<.......>>>>>>>>>>>>.... (((((((..(((......[....))).((.(()).)).((((....))))..(((((..]....)))))))))))).... Ternary complex of E. coli leucyl-tRNA synthetase, tRNA(leu) and the benzoxaborole AN2679 in the editing conformation; TRNA-LEU5 (UAA ISOACEPTOR) 4as1 B 83 2.02 RF00005 URS00005ABD4E_83333 22683997 0030533 0006412 83333 gcccggaugguggaaucgguagacacaagggaaaaucccucggcguucgcgcugugcggguucaagucccgcuccggguaccn <<<<<<<..<<<...........>>>.<<<<.....>>>>.<<<<<..>>>>>..<<<<<.......>>>>>>>>>>>>.... .((((((..(((......[....))).((((.....)))).((((....))))..(((((..]....)))))))))))..... Ternary complex of E. coli leucyl-tRNA synthetase, tRNA(leu) and the benzoxaborole AN2679 in the editing conformation; TRNA-LEU5 (UAA ISOACEPTOR) 4ato G 34 2.2 RF02519 URS000080E03C_1428 23267117 0003729 0017148 1428 aaauugguguaaccuuaccguaguaggugcuaan .....(((...<<<<.))).....>>>>...... .....[[[...((((.]]].....))))...... New insights into the mechanism of bacterial Type III toxin-antitoxin systems: selective toxin inhibition by a non-coding RNA pseudoknot; TOXI 4b5r A 94 2.95 RF00162 URS000080DFE5_119072 23325110 0010468 119072 ggcuuaucaagagagggggagcgacuggcgcgaagaaccccggcaaccagaaauggugccaauuccugcagcggaaacguugaaagaugagccg <<<<<<<<......<<<...<<<...((>>>......>>>.<<<<.<<<....>>>>>>>....))..<<<<<....>>>>>...>>>>>>>>. ((((((((....(.(((...(((.[.[[)))......))))(((..(((....))).)))...(]].](((((....)))))..))))))))). SAM-I riboswitch bearing the H. marismortui K-t-7; SAM-I RIBOSWITCH 4c9d C 13 3.0 RF01357 URS00021ED974_300852 24150936 0006952 300852 agccucguagagn ..<<<<...>>>> ..((((...)))) Cas6 (TTHB231) product complex; R3 REPEAT RNA CLEAVAGE PRODUCT 4c9d D 14 3.0 RF01357 URS00021ED974_300852 24150936 0006952 300852 aagccucguagagn ...<<<.....>>> ...((((...)))) Cas6 (TTHB231) product complex; R3 REPEAT RNA CLEAVAGE PRODUCT 4cqn B 82 2.5 RF00005 URS000080DF1D_562 24935946 0030533 0006412 562 gcccggaugguggaaucgguagacacaagggauuaaucccucggcgcgcgcugugcggguucaagucccgcuccggguacca <<<<<<<..<<<...........>>>.<<<<<<..>>>>>>.<<<<..>>>>..<<<<<.......>>>>>>>>>>>>.... (((((((..(((......[....))).(((((....))))).((((..))))..(((((..]....)))))))))))).... Crystal structure of the E.coli LeuRS-tRNA complex with the non- cognate isoleucyl adenylate analogue; ESCHERICHIA COLI TRNA-LEU UAA ISOACCEPTOR 4cqn E 79 2.5 RF00005 URS000080DF1D_562 24935946 0030533 0006412 562 gcccggaugguggaaucgguagacacaagggauucccucggcgcgcgcugugcggguucaagucccgcuccggguacca <<<<<<<..<<<...........>>>.<<<<<.>>>>>.<<<<..>>>>..<<<<<.......>>>>>>>>>>>>.... (((((((..(((......[....))).((((...)))).((((..))))..(((((..]....)))))))))))).... Crystal structure of the E.coli LeuRS-tRNA complex with the non- cognate isoleucyl adenylate analogue; ESCHERICHIA COLI TRNA-LEU UAA ISOACCEPTOR 4cxg Y 76 8.7 RF00005 URS000080DDA3_9986 24995983 0030533 0006412 9986 gcggauuuancucagnngggagagcnccggunuccanaaccggagnucnugugnucgnuccacagaauucgcacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).(((((.......))))).....(((((..]....)))))))))))).... Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement; TRANSFER RNA 4cxh Y 76 8.9 RF00005 URS000080DDA3_9986 24995983 0030533 0006412 9986 gcggauuuancucagnngggagagcnccggunuccanaaccggagnucnugugnucgnuccacagaauucgcacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).(((((.......))))).....(((((..]....)))))))))))).... Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement; TRANSFER RNA 4ds6 A 393 3.644 RF02001,RF01998 URS000080DE77_182710 22484319 0000373 182710 guuaugugugcccggcaugggugcagucuauagggugagagucccgaacugugaaggcagaaguaacaguuagccuaacgcaaggguguccguggcgacauggaaucugaaggaagcggacggcaaaccuucggucugaggaacacgaacuucauaugaggcuagguaucaauggaugaguuugcauaacaaaacaaaguccuuucugccaaaguugguacagaguaaaugaagcagauugaugaagggaaagacugcauucuuacccggggaggucuggaaacagaagucagcagaagucauaguacccuguucgcaggggaaggacggaacaaguauggcguucgcgccuaagcuugaaccaccguauaccgaacgguacguacgguggug [[[[[.....<<<<<...<<<<<<<<<<<...<<<.......>>>..<<<<<...(((((((...>>>>>..<<<...<<<..<<<<.<<<<<<....>>>>>>>>>>.......>>>...>>>...<<<<<<<<<<<...........<<<<<......<<<..<<<<<<<<<<<<..<<<<..]]]]].>>>>...>>>>.)))))))...>>>>>>>>..>>>...>>>>>>>>>>...>>>>>>...>>>>>>>>>>>....>>>>>..<.<<<<....>>>>..>........<<<......<<<<<....>>>>>....>>>....<<<<<..<<<<....>>>>...>>>>>..<<<<<<<<<<<<....>>>..>>>>>>>>>.. {{{{{..[<.((((({..(((((((((((...(((.......)))..(((((...[[[[[[[...)))))..(((...(((..((((.((((((....))))))))))...>}..)))...)))...(((((((((((.(.....)...(((((.....[(((..(((.((((((((..((((.]}}}}}.))))...)))).]]]]]]]...)))).)))..)))...))))))))))...))))))...)))))))))))...])))))(...((((....))))...).......(((.(....(((........)))...))))....(((((..((((....))))...)))))..((.(((((((((....)))..)))))).)).. Crystal structure of a group II intron in the pre-catalytic state; Mutant Group IIC Intron 4e8k A 388 3.03 RF02001,RF01998 URS000080DE44_182710 23101623 0000373 182710 gugcccggcaugggugcagucuauagggugagagucccgaacugugaaggcagaaguaacaguuagccuaacgcaaggguguccguggcgacauggaaucugaaggaagcggacggcaaaccuucggucugaggaacacgaacuucauaugaggcuagguaucaauggaugaguuugcauaacaaaacaaaguccuuucugccaaaguugguacagaguaaaugaagcagauugaugaagggaaagacugcauucuuacccggggaggucuggaaacagaagucagcagaagucauaguacccuguucgcaggggaaggacggaacaaguauggcguucgcgccuaagcuugaaccgccguauaccgaacgguacguacgguggugug ...<<<<<...<<<<<<<<<<<...<<<.......>>>..(((((...<<<<<<<...)))))..<<<...<<<..<<<<.<<<<<<....>>>>>>>>>>.......>>>...>>>...(((((([[[[[...........[[[[[......[[[....((((((<<<<..<<<<........>>>>...>>>>.>>>>>>>...))))))....]]]...]]]]]]]]]]...))))))...>>>>>>>>>>>....>>>>>....<<<<....>>>>...........<<<......<<<<<....>>>>>....>>>....<<<<<..<<<<....>>>>...>>>>>.<<<<<<<<<<<<<....>>>..>>>>>>>>>>... [<.((((({..(((((((((((...(((.......)))..(((((....[[[[[[...)))))..(((...(((..((((.((((((....))))))))))...>}..)))...)))...(((((((((((.(.....)...(((((.....[(((....(.((((((((..((((.]......))))...)))).]]]]]]....)))).)....)))...))))))))))...))))))...)))))))))))...])))))(...((((....))))...).......(((.(....(((........)))...))))....(((((..((((....))))...))))).(((((((((((((....)))..))))))))))... Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Ca2+ and a non-hydrolyzed oligonucleotide substrate; Group IIC intron 4e8m A 394 3.5 RF02001,RF01998 URS000080DF32_182710 23101623 0000373 182710 ggggugugcccggcaugggugcagucuauagggugagagucccgaacugugaaggcagaaguaacaguuagccuaacgcaaggguguccguggcgacauggaaucugaaggaagcggacggcaaaccuucggucugaggaacacgaacuucauaugaggcuagguaucaauggaugaguuugcauaacaaaacaaaguccuuucugccaaaguugguacagaguaaaugaagcagauugaugaagggaaagacugcauucuuacccggggaggucuggaaacagaagucagcagaagucauaguacccuguucgcaggggaaggacggaacaaguauggcguucgcgccuaagcuugaaccgccguauaccgaacgguacguacgguggugugg [.......<<<<<...<<<<<<<<<<<...<<<.......>>>..<<<<<...(((((((...>>>>>..<<<...<<<..<<<<.<<<<<<....>>>>>>>>>>.......>>>...>>>...<<<<<<<<<<<...........<<<<<......<<<..<<<<<<<<<<<<..<<<<......].>>>>...>>>>.)))))))...>>>>>>>>..>>>...>>>>>>>>>>...>>>>>>...>>>>>>>>>>>....>>>>>..<.<<<<....>>>>..>........<<<......<<<<<....>>>>>....>>>....<<<<<..<<<<....>>>>...>>>>>.<<<<<<<<<<<<<....>>>..>>>>>>>>>>.... {....[<.((((({..((.((((((((...(((.......)))..(((((...[[[[[[[...)))))..(((...(((..((((.((((((....))))))))))...>}..)))...)))...(((((((((((.(.....)...(((((.....[(((....(.((((((((..((((.]....}.))))...)))).]]]]]]]...)))).)....)))...))))))))))...))))))...)))))))).))...])))))(...((((....))))...).......(((.(....(((.(....).)))...))))....(((((..((((....))))...))))).(((((((((((((....)))..)))))))))).... Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of K+ and Mg2+; Group IIC intron 4e8n A 393 2.96 RF02001,RF01998 URS000080DE44_182710 23101623 0000373 182710 ggggugugcccggcaugggugcagucuauagggugagagucccgaacugugaaggcagaaguaacaguuagccuaacgcaaggguguccguggcgacauggaaucugaaggaagcggacggcaaaccuucggucugaggaacacgaacuucauaugaggcuagguaucaauggaugaguuugcauaacaaaacaaaguccuuucugccaaaguugguacagaguaaaugaagcagauugaugaagggaaagacugcauucuuacccggggaggucuggaaacagaagucagcagaagucauaguacccuguucgcaggggaaggacggaacaaguauggcguucgcgccuaagcuugaaccgccguauaccgaacgguacguacgguggugug {.......<<<<<...<<<<<<<<<<<...<<<.......>>>..(((((...<<<<<<<...)))))..<<<...<<<..<<<<.<<<<<<....>>>>>>>>>>.......>>>...>>>...[[[[[[[[[[[...........[[[[[......[[[...(((((((<<<...<<<<......}.>>>>....>>>.>>>>>>>...)))))))...]]]...]]]]]]]]]]...]]]]]]...>>>>>>>>>>>....>>>>>....<<<<....>>>>...........<<<......<<<<......>>>>....>>>....<<<<<..<<<<....>>>>...>>>>>.<<<<<<<<<<<<<....>>>..>>>>>>>>>>... {....[<.((((({..(((((((((((...(((.......)))..(((((...[[[[[[[...)))))..(((...(((..((((.((((((....))))))))))...>}..)))...)))...(((((((((((.(.....)...(((((.....[(((....(.((((((((..((((.]....}.))))...)))).]]]]]]]...)))).)....)))...))))))))))...))))))...)))))))))))...])))))(...((((....))))...).......(((.(....(((........)))...))))....(((((.(((((....))))..)))))).(((((((((((((....)))..))))))))))... Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of NH4+ and Mg2+; Group IIC intron 4e8p A 393 3.28 RF02001,RF01998 URS000080DE44_182710 23101623 0000373 182710 ggggugugcccggcaugggugcagucuauagggugagagucccgaacugugaaggcagaaguaacaguuagccuaacgcaaggguguccguggcgacauggaaucugaaggaagcggacggcaaaccuucggucugaggaacacgaacuucauaugaggcuagguaucaauggaugaguuugcauaacaaaacaaaguccuuucugccaaaguugguacagaguaaaugaagcagauugaugaagggaaagacugcauucuuacccggggaggucuggaaacagaagucagcagaagucauaguacccuguucgcaggggaaggacggaacaaguauggcguucgcgccuaagcuugaaccgccguauaccgaacgguacguacgguggugug {.......<<<<<...<<<<<<<<<<<...<<<.......>>>..(((((...<<<<<<<...)))))..<<<...<<<..<<<<.<<<<<<....>>>>>>>>>>.......>>>...>>>...[[[[[[[[[[[...........[[[[[......[[[...(((((((<<<<..<<<<......}.>>>>...>>>>.>>>>>>>...)))))))...]]]...]]]]]]]]]]...]]]]]]...>>>>>>>>>>>....>>>>>....<<<<....>>>>...........<<<......<<<<......>>>>....>>>....<<<<<..<<<<....>>>>...>>>>>.<<<<<<<<<<<<<....>>>..>>>>>>>>>>... {....[<.((((({..(((((((((((...(((.......)))..(((((...[[[[[[[...)))))..(((...(((..((((.((((((....))))))))))...>}..)))...)))...(((((((((((.(.....)...(((((......(((....(.((((((((..((((......}.))))...)))).]]]]]]]...)))).)....)))...))))))))))...))))))...)))))))))))...])))))(...((((....))))...).......(((.(....(((........)))...))))....(((((..((((....))))...))))).(((((((((((((....)))..))))))))))... Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Rb+ and Mg2+; Group IIC intron 4e8q A 393 2.84 RF02001,RF01998 URS000080DE44_182710 23101623 0000373 182710 ggggugugcccggcaugggugcagucuauagggugagagucccgaacugugaaggcagaaguaacaguuagccuaacgcaaggguguccguggcgacauggaaucugaaggaagcggacggcaaaccuucggucugaggaacacgaacuucauaugaggcuagguaucaauggaugaguuugcauaacaaaacaaaguccuuucugccaaaguugguacagaguaaaugaagcagauugaugaagggaaagacugcauucuuacccggggaggucuggaaacagaagucagcagaagucauaguacccuguucgcaggggaaggacggaacaaguauggcguucgcgccuaagcuugaaccgccguauaccgaacgguacguacgguggugug {.......<<<<<...<<<<<<<<<<<...<<<.......>>>..(((((...<<<<<<<...)))))..<<<...<<<..<<<<.<<<<<<....>>>>>>>>>>.......>>>...>>>...(((((([[[[[...........[[[[[......[[[....((((((<<<...<<<<......}.>>>>....>>>.>>>>>>>...))))))....]]]...]]]]]]]]]]...))))))...>>>>>>>>>>>....>>>>>....<<<<....>>>>...........<<<......<<<<<....>>>>>....>>>....<<<<<..<<<<....>>>>...>>>>>.<<<<<<<<<<<<<....>>>..>>>>>>>>>>... {....[<.((((({..(((((((((((...(((.......)))..(((((...[[[[[[[...)))))..(((...(((..((((.((((((....))))))))))...>}..)))...)))...(((((((((((.(.....)...(((((.....[(((....(.((((((((..((((.]....}.))))...)))).]]]]]]]...)))).)....)))...))))))))))...))))))...)))))))))))...])))))(...((((....))))...).......(((.(....(((........)))...))))....(((((..((((....))))...))))).(((((((((((((....)))..))))))))))... Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Tl+ and Mg2+; Group IIC intron 4e8r A 393 3.36 RF02001,RF01998 URS000080DE44_182710 23101623 0000373 182710 ggggugugcccggcaugggugcagucuauagggugagagucccgaacugugaaggcagaaguaacaguuagccuaacgcaaggguguccguggcgacauggaaucugaaggaagcggacggcaaaccuucggucugaggaacacgaacuucauaugaggcuagguaucaauggaugaguuugcauaacaaaacaaaguccuuucugccaaaguugguacagaguaaaugaagcagauugaugaagggaaagacugcauucuuacccggggaggucuggaaacagaagucagcagaagucauaguacccuguucgcaggggaaggacggaacaaguauggcguucgcgccuaagcuugaaccgccguauaccgaacgguacguacgguggugug [.......<<<<<...<<<<<<<<<<<...<<<.......>>>..<<<<<...(((((((...>>>>>..<<<...<<<..<<<<.<<<<<<....>>>>>>>>>>.......>>>...>>>...<<<<<<<<<<<...........<<<<<......<<<..<<<<<<<<<<<...<<<<......].>>>>....>>>.)))))))...>>>>>>>>..>>>...>>>>>>>>>>...>>>>>>...>>>>>>>>>>>....>>>>>....<<<<....>>>>...........<<<......<<<<<....>>>>>....>>>....<<<<<..<<<<<..>>>>>...>>>>>.<<<<<<<<<<<<<....>>>..>>>>>>>>>>... {....[<.((((({..(((((((((((...(((.......)))..(((((...[[[[[[[...)))))..(((...(((..((((.((((((....))))))))))...>}..)))...)))...(((((((((((.(.....)...(((((.....[((.....(..(((((((..((((.]....}.))))...)))).]]]]]]]...)))..).....))...))))))))))...))))))...)))))))))))...])))))(....(((....)))....).......(((.(....(((........)))...))))....(((((..((((....))))...))))).(((((((((((((....)))..))))))))))... Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Cs+ and Mg2+; Group IIC intron 4e8t A 388 3.34 RF02001,RF01998 URS000080DE44_182710 23101623 0000373 182710 gugcccggcaugggugcagucuauagggugagagucccgaacugugaaggcagaaguaacaguuagccuaacgcaaggguguccguggcgacauggaaucugaaggaagcggacggcaaaccuucggucugaggaacacgaacuucauaugaggcuagguaucaauggaugaguuugcauaacaaaacaaaguccuuucugccaaaguugguacagaguaaaugaagcagauugaugaagggaaagacugcauucuuacccggggaggucuggaaacagaagucagcagaagucauaguacccuguucgcaggggaaggacggaacaaguauggcguucgcgccuaagcuugaaccgccguauaccgaacgguacguacgguggugug ...<<<<<...<<<<<<<<<<<...<<<.......>>>..(((((...<<<<<<<...)))))..<<<...<<<..<<<<.<<<<<<....>>>>>>>>>>.......>>>...>>>...(((((([[[[[...........[[[[[......[[[....((((((<<<<..<<<<........>>>>...>>>>.>>>>>>>...))))))....]]]...]]]]]]]]]]...))))))...>>>>>>>>>>>....>>>>>....<<<<....>>>>...........<<<......<<<<<....>>>>>....>>>....<<<<<..<<<<....>>>>...>>>>>.<<<<<<<<<<<<<....>>>..>>>>>>>>>>... [<.((((({..(((((((((((...(((.......)))..(((((...[[[[[[[...)))))..(((...(((..((((.((((((....))))))))))...>}..)))...)))...(((((((((((.(.....)...(((((.....[(((....(.((((((((..((((.]......))))...)))).]]]]]]]...)))).)....)))...))))))))))...))))))...)))))))))))...])))))(...((((....))))...).......(((.(....(((........)))...))))....(((((..((((....))))...))))).(((((((((((((....)))..))))))))))... Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Ca2+ and an oligonucleotide fragment substrate (low energy dataset); Group IIC intron 4e8v A 389 3.995 RF02001,RF01998 URS000080DE44_182710 23101623 0000373 182710 ugugcccggcaugggugcagucuauagggugagagucccgaacugugaaggcagaaguaacaguuagccuaacgcaaggguguccguggcgacauggaaucugaaggaagcggacggcaaaccuucggucugaggaacacgaacuucauaugaggcuagguaucaauggaugaguuugcauaacaaaacaaaguccuuucugccaaaguugguacagaguaaaugaagcagauugaugaagggaaagacugcauucuuacccggggaggucuggaaacagaagucagcagaagucauaguacccuguucgcaggggaaggacggaacaaguauggcguucgcgccuaagcuugaaccgccguauaccgaacgguacguacgguggugug ....<<<<<...<<<<<<<<<<<...<<<.......>>>..(((((...<<<<<<<...)))))..<<<...<<<..<<<<.<<<<<<....>>>>>>>>>>.......>>>...>>>...(((((((((((...........(((((......[[[.....(((((<<<<..<<<<........>>>>...>>>>.>>>>>>>...))))).....]]]...))))))))))...))))))...>>>>>>>>>>>....>>>>>..<.<<<<....>>>>..>........<<<......<<<<......>>>>....>>>....<<<<<..<<<<....>>>>...>>>>>.<<<<<<<<<<<<......>>..>>>>>>>>>>... .[<.((((({..(.(((((((((...(((.......)))...((((...[[[[[[[...))))...(((...(((..(((..((((((....)))))).)))...>}..)))...)))...(((((((((((.(.....)...(((((.....[.(.....(.(((.((((..((((.]......))))...)))).]]]]]]]....))).).....)....))))))))))...))))))...))))))))).)...])))))(...((((....))))...).......(...(....((..........))...)..)....(((((..((((....))))...))))).(((((((((.(((....)))...)))))))))... Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of K+ and Ba2+; Group IIC intron 4en5 A 52 2.957 RF01734 URS000080E2F0_93929 22678284 0010628,1902617 93929 gggcgaugaggcccgcccaaacugcccugaaaagggcugauggccucuacug .((((..<<<<<<))))......<<<<<....>>>>>....>>>>>>..... .[[[[..((((((]]]]......(((((....)))))....))))))..... Crystal structure of fluoride riboswitch, Tl-Acetate soaked; Fluoride riboswitch 4ena A 52 2.85 RF01734 URS000080E2F0_93929 22678284 0010628,1902617 93929 nggcgaugaggcccgcccaaacugcccugaaaagggcugauggccucuacug .((((..<<<<<<))))......<<<<<....>>>>>....>>>>>>..... .[[[[..((((((]]]]......(((((....)))))....))))))..... Crystal structure of fluoride riboswitch, soaked in Cs+; Fluoride riboswitch 4enb A 52 2.302 RF01734 URS000080E2F0_93929 22678284 0010628,1902617 93929 nggcgaugaggcccgcccaaacugcccugaaaagggcugauggccucuacug .((((..<<<<<<))))......<<<<<....>>>>>....>>>>>>..... .[[[[..((((((]]]]......(((((....)))))....))))))..... Crystal structure of fluoride riboswitch, bound to Iridium; Fluoride riboswitch 4enc A 52 2.272 RF01734 URS000080E2F0_93929 22678284 0010628,1902617 93929 gggcgaugaggcccgcccaaacugcccugaaaagggcugauggccucuacug .((((..<<<<<<))))......<<<<<....>>>>>....>>>>>>..... .[[[[..((((((]]]]......(((((....)))))....))))))..... Crystal structure of fluoride riboswitch; Fluoride riboswitch 4erj A 161 3.0 RF00168 URS000080DFA3_2336 22771573 0009085 2336 ggacggaggcgcgcccgagaugaguaggcugucccaucaggggaggaaucggggacggcugaaaggcgagggcgccgaagcgagcagaguuccucccgcucugcuuggcugggggugaggggaauacccuuaccacugucgcgaaagcggagagccgucca <<<<<<....<<<<<<..<.......<<<<<<<<<.....((((((.....>>>>>>>>>......>..>>>>>>...<<<<<<<<<<<<.))))))>>>>>>>>>.>>><<.<<<<<<<<.....>>>>>>>>.>>.<<<<....>>>>....>>>>>>. ((((((..(.((((((..(.......(((((((((..(..[[[[[[....))))))))))......)..)))))))..((((((((((((.]]]]]]))))))))).)))((.(((.((((.....)))).))).))..(((....))).....)))))). Crystal structure of the lysine riboswitch bound to a 6-aminocaproic acid; Lysine riboswitch RNA 4erl A 161 3.0 RF00168 URS000080DFA3_2336 22771573 0009085 2336 ggacggaggcgcgcccgagaugaguaggcugucccaucaggggaggaaucggggacggcugaaaggcgagggcgccgaagcgagcagaguuccucccgcucugcuuggcugggggugaggggaauacccuuaccacugucgcgaaagcggagagccgucca <<<<<<....<<<<<<..<.......<<<<<<<<<.....((((((.....>>>>>>>>>......>..>>>>>>...<<<<<<<<<<<<.))))))>>>>>>>>>.>>><<.<<<<<<<<.....>>>>>>>>.>>.<<<<....>>>>....>>>>>>. ((((((..(.((((((..(.......(((((((((..(..[[[[[[....))))))))))......)..)))))))..((((((((((((.]]]]]]))))))))).)))((.(((.((((.....)))).))).)).((((....))))....)))))). Crystal structure of the lysine riboswitch bound to a lysine-glycine dipeptide; Lysine riboswitch RNA 4faq A 396 3.11 RF02001,RF01998 URS000080E361_182710 23101623 0000373 182710 guuaugugugcccggcaugggugcagucuauagggugagagucccgaacugugaaggcagaaguaacaguuagccuaacgcaaggguguccguggcgacauggaaucugaaggaagcggacggcaaaccuucggucugaggaacacgaacuucauaugaggcuagguaucaauggaugaguuugcauaacaaaacaaaguccuuucugccaaaguugguacagaguaaaugaagcagauugaugaagggaaagacugcauucuuacccggggaggucuggaaacagaagucagcagaagucauaguacccuguucgcaggggaaggacggaacaaguauggcguucgcgccuaagcuugaaccgccguauaccgaacgguacguacgguggugugg [[[[[.....<<<<<...<<<<<<<<<<<...<<<.......>>>..<<<<<...(((((((...>>>>>..<<<...<<<..<<<<.<<<<<<....>>>>>>>>>>.......>>>...>>>...<<<<<<<<<<<...........<<<<<......<<<..<<<<<<<<<<<<..<<<<..]]]]].>>>>...>>>>.)))))))...>>>>>>>>..>>>...>>>>>>>>>>...>>>>>>...>>>>>>>>>>>....>>>>>....<<<<....>>>>...........<<<......<<<<......>>>>....>>>....<<<<<..<<<<....>>>>...>>>>>.<<<<<<<<<<<<<....>>>..>>>>>>>>>>.... .{{{{..[<.((((({..(((((((((((...(((.......)))..(((((...[[[[[[[...)))))..(((...(((..((((.((((((....))))))))))...>}..)))...)))...(((((((((((.(.....)...(((((.....[(((....((((((((((..((((.]}}}}..))))...)))).]]]]]]]...))))))....)))...))))))))))...))))))...)))))))))))...])))))(...((((....))))...).......(((.(....(((........)))...))))....(((((..((((....))))...))))).(((((((((((((....)))..)))))))))).... Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Ca2+ and 5'-exon; Group IIC intron 4far A 390 2.86 RF02001,RF01998 URS000080E176_182710 23101623 0000373 182710 gugugcccggcaugggugcagucuauagggugagagucccgaacugugaaggcagaaguaacaguuagccuaacgcaaggguguccguggcgacauggaaucugaaggaagcggacggcaaaccuucggucugaggaacacgaacuucauaugaggcuagguaucaauggaugaguuugcauaacaaaacaaaguccuuucugccaaaguugguacagaguaaaugaagcagauugaugaagggaaagacugcauucuuacccggggaggucuggaaacagaagucagcagaagucauaguacccuguucgcaggggaaggacggaacaaguauggcguucgcgccuaagcuugaaccgccguauaccgaacgguacguacgguggugug .....<<<<<...<<<<<<<<<<<...<<<.......>>>..<<<<<...(((((((...>>>>>..<<<...<<<..<<<<.<<<<<<....>>>>>>>>>>.......>>>...>>>...<<<<<<<<<<<...........<<<<<......<<<..<<<<<<<<<<<<..<<<<........>>>>...>>>>.)))))))...>>>>>>>>..>>>...>>>>>>>>>>...>>>>>>...>>>>>>>>>>>....>>>>>....<<<<....>>>>...........<<<......<<<<<....>>>>>....>>>....<<<<<..<<<<....>>>>...>>>>>.<<<<<<<<<<<<<....>>>..>>>>>>>>>>... ..[<.((((({..(((((((((((...(((.......)))..(((((...[[[[[[[...)))))..(((...(((..((((.((((((....))))))))))...>}..)))...)))...(((((((((((.(.....)...(((((.....[(((..((((((((((((..((((.]......))))...)))).]]]]]]]...))))))))..)))...))))))))))...))))))...)))))))))))...])))))(...((((....))))...).......(((.(....(((........)))...))))....(((((..((((....))))...))))).(((((((((((((....)))..))))))))))... Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Mg2+ and 5'-exon; Group IIC intron 4fau A 393 2.87 RF02001,RF01998 URS000080DDE2_182710 23101623 0000373 182710 guuaugugcccggcaugggugcagucuauagggugagagucccgaacugugaaggcagaaguaacaguuagccuaacgcaaggguguccguggcgacauggaaucugaaggaagcggacggcaaaccuucggucugaggaacacgaacuucauaugaggcuagguaucaauggaugaguuugcauaacaaaacaaaguccuuucugccaaaguugguacagaguaaaugaagcagauugaugaagggaaagacugcauucuuacccggggaggucuggaaacagaagucagcagaagucauaguacccuguucgcaggggaaggacggaacaaguauggcguucgcgccuaagcuugaaccgccguauaccgaacgguacguacgguggugug [[[[....<<<<<...<<<<<<<<<<<...<<<.......>>>..<<<<<...(((((((...>>>>>..<<<...<<<..<<<<.<<<<<<....>>>>>>>>>>.......>>>...>>>...<<<<<<<<<<<...........<<<<<......<<<..<<<<<<<<<<<...<<<<...]]]].>>>>....>>>.)))))))...>>>>>>>>..>>>...>>>>>>>>>>...>>>>>>...>>>>>>>>>>>....>>>>>....<<<<....>>>>...........<<<......<<<<......>>>>....>>>....<<<<<..<<<<....>>>>...>>>>>.<<<<<<<<<<<<<....>>>..>>>>>>>>>>... .{{{{[<.((((({..(((((((((((...(((.......)))..(((((...[[[[[[[...)))))..(((...(((..((((.((((((....))))))))))...>}..)))...)))...(((((((((((.(.....)...(((((.....[(((....((((((((((..((((.]}}}}..))))...)))).]]]]]]]...))))))....)))...))))))))))...))))))...)))))))))))...])))))(...((((....))))...).......(((.(....(((........)))...))))....(((((..((((....))))...))))).(((((((((((((....)))..))))))))))... Structure of Oceanobacillus iheyensis group II intron in the presence of Li+, Mg2+ and 5'-exon; Group IIC intron 4faw A 390 2.7 RF02001,RF01998 URS000080DF32_182710 23101623 0000373 182710 ugugcccggcaugggugcagucuauagggugagagucccgaacugugaaggcagaaguaacaguuagccuaacgcaaggguguccguggcgacauggaaucugaaggaagcggacggcaaaccuucggucugaggaacacgaacuucauaugaggcuagguaucaauggaugaguuugcauaacaaaacaaaguccuuucugccaaaguugguacagaguaaaugaagcagauugaugaagggaaagacugcauucuuacccggggaggucuggaaacagaagucagcagaagucauaguacccuguucgcaggggaaggacggaacaaguauggcguucgcgccuaagcuugaaccgccguauaccgaacgguacguacgguggugugg ....<<<<<...<<<<<<<<<<<...<<<.......>>>..<<<<<...(((((((...>>>>>..<<<...<<<..<<<<.<<<<<<....>>>>>>>>>>.......>>>...>>>...<<<<<<<<<<<...........<<<<<......<<<..<<<<<<<<<<<<..<<<<........>>>>...>>>>.)))))))...>>>>>>>>..>>>...>>>>>>>>>>...>>>>>>...>>>>>>>>>>>....>>>>>....<<<<....>>>>...........<<<......<<<<......>>>>....>>>....<<<<<..<<<<....>>>>...>>>>>.<<<<<<<<<<<<<....>>>..>>>>>>>>>>.... .[<.((((({..(((((((((((...(((.......)))..(((((...[[[[[[[...)))))..(((...(((..((((.((((((....))))))))))...>}..)))...)))...(((((((((((.(.....)...(((((.....[(((..(.(..(((((((..((((.]......))))...)))).]]]]]]]...)))..).)..)))...))))))))))...))))))...)))))))))))...])))))(...((((....))))...).......(((.(....(((.(....).)))...))))....(((((..((((....))))...))))).(((((((((((((....)))..)))))))))).... Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Mg2+ and a hydrolyzed oligonucleotide fragment; Group IIC intron 4fax A 392 3.1 RF02001,RF01998 URS000080E12E_182710 23101623 0000373 182710 ggggugugcccggcaugggugcagucuauagggugagagucccgaacugugaaggcagaaguaacaguuagccuaacgcaaggguguccguggcgacauggaaucugaaggaagcggacggcaaaccuucggucugaggaacacgaacuucauaugaggcuagguaucaauggaugaguuugcauacaaaacaaaguccuuucugccaaaguugguacagaguaaaugaagcagauugaugaagggaaagacugcauucuuacccggggaggucuggaaacagaagucagcagaagucauaguacccuguucgcaggggaaggacggaacaaguauggcguucgcgccuaagcuugaaccgccguauaccgaacgguacguacgguggugug {.......<<<<<...<<<<<<<<<<<...<<<.......>>>..(((((...<<<<<<<...)))))..<<<...<<<..<<<<.<<<<<<....>>>>>>>>>>.......>>>...>>>...(((((([[[[[...........[[[[[......[[[....((((((<<<<..<<<<.....}.>>>>...>>>>.>>>>>>>...))))))....]]]...]]]]]]]]]]...))))))...>>>>>>>>>>>....>>>>>....<<<<....>>>>...........<<<......<<<<......>>>>....>>>....<<<<<..<<<<....>>>>...>>>>>.<<<<<<<<<<<<<....>>>..>>>>>>>>>>... .....[<.((((({..(((((((((((...(((.......)))..(((((...[[[[[[[...)))))..(((...(((..((((.((((((....))))))))))...>}..)))...)))...(((((((((((.(.....)...(((((......((....((.((((((((..((((.......))))...)))).]]]]]]]...)))).))....))...))))))))))...))))))...)))))))))))...])))))(...((((....))))...).......(((.(....(((........)))...))))....(((((..((((....))))...))))).(((((((((((((....)))..))))))))))... Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Na+ and Mg2+; Group IIC intron 4fb0 A 393 3.22 RF02001,RF01998 URS000080E12F_182710 23101623 0000373 182710 ggggugugcccggcaugggugcagucuauagggugagagucccgaacugugaaggcagaaguaacaguuagccuaacgcaaggguguccguggcgacauggaaucugaaggaagcggacggcaaaccuucggucugaggaacacgaacuucauaugaggcuagguaucaauggaugaguuugcauaacaaaacaaaguccuuucugccaaaguugguacagaguaaaugaagcagauugaugaagggaaagacugcauucuuacccggggaggucuggaaacagaagucagcagaagucauaguacccuguucgcaggggaaggacggaacaaguauggcguucgcgccuaagcuugaaccgccguauaccgaacgguagguacgguggugug {.......<<<<<...<<<<<<<<<<<...<<<.......>>>..(((((...<<<<<<<...)))))..<<<...<<<..<<<<.<<<<<<....>>>>>>>>>>.......>>>...>>>...(((((([[[[[...........[[[[[......[[[....((((((<<<<..<<<<......}.>>>>...>>>>.>>>>>>>...))))))....]]]...]]]]]]]]]]...))))))...>>>>>>>>>>>....>>>>>....<<<<....>>>>...........<<<......<<<<......>>>>....>>>....<<<<<..<<<<....>>>>...>>>>>.<<<<<<<<<<<<<....>>>..>>>>>>>>>>... {....[<.((((({..((.((((((((...(((.......)))..(((((...[[[[[[[...)))))..(((...(((..((((.((((((....))))))))))...>}..)))...)))...(((((((((((.(.....)...(((((.....[(((....(.((((((((..((((.]....}.))))...)))).]]]]]]]...)))).)....)))...))))))))))...))))))...)))))))).))...])))))(...((((....))))...).......(((.(....(((........)))...))))....(((((..((((....))))...))))).(((((((((((((....)))..))))))))))... Structure of Oceanobacillus iheyensis group II intron C377G mutant in a ligand-free state in the presence of K+ and Mg2+; Group IIC intron 4fe5 B 67 1.32 RF00167 URS000080DDA1_1423 15549109 0009113 1423 ggacauauaaucgcguggauauggcacgcaaguuucuaccgggcaccguaaauguccgacuaugucc <<<<<<<...<.<<<<<.....<<>>>>>.>........<<<<<<>>.....>>>>>>..>>>>>>> ((((((((..(.(((((.....[[))))).)[.....)]((((((]].....))))))..))))))) Crystal structure of the xpt-pbuX guanine riboswitch aptamer domain in complex with hypoxanthine; xpt-pbuX guanine riboswitch aptamer domain 4fej B 67 1.5 RF00167 URS000080E1C2_1423 23485418 0009113 1423 ggacauauauucgcguggauauggcacgcaaguuucuaccgggcaccguaaauguccgacuaugucc <<<<<<<...<.<<<<<.....<<>>>>>.>........<<<<<<>>.....>>>>>>..>>>>>>> ((((((((..(.(((((.....[[))))).)[.....)]((((((]].....))))))..))))))) Crystal structure of the A24U mutant xpt-pbuX guanine riboswitch aptamer domain in complex with hypoxanthine; A24U mutant of the B. subtilis xpt-pbuX guanine riboswitch aptamer domain 4fel B 67 1.6 RF00167 URS000080DF61_1423 23485418 0009113 1423 ggacauauaaacgcguggauauggcacgcgaguuucuaccgggcaccguaaauguccgacuaugucc <<<<<<<....<<<<<<.....<<>>>>>>.........<<<<<<>>.....>>>>>>..>>>>>>> ((((((((...((((((.....[[)))))).[.....)]((((((]].....))))))..))))))) Crystal structure of the U25A/A46G mutant of the xpt-pbuX guanine riboswitch aptamer domain in complex with hypoxanthine; U25A/A46G mutant of the B. subtilis xpt-pbuX guanine riboswitch aptamer domain 4fen B 67 1.35 RF00167 URS000080DD34_1423 23485418 0009113 1423 ggacauauauacgcguggauauggcacgcgaguuucuaccgggcaccguaaauguccgacuaugucc <<<<<<<....<<<<<<.....<<>>>>>>.........<<<<<<>>.....>>>>>>..>>>>>>> ((((((((...((((((.....[[)))))).[.....)]((((((]].....))))))..))))))) Crystal structure of the A24U/U25A/A46G mutant xpt-pbuX guanine riboswitch aptamer domain in complex with hypoxanthine; A24U/U25A/A46G mutant of the B. subtilis xpt-pbuX guanine riboswitch aptamer domain 4feo B 67 1.6 RF00167 URS000080DF68_1423 23485418 0009113 1423 ggacauauaaacgcguggauauggcacgcgaguuucuaccgggcaccguaaauguccgauuaugucc <<<<<<<....<<<<<<.....<<>>>>>>.........<<<<<<>>.....>>>>>>..>>>>>>> ((((((((...((((((.....[[)))))).[.....)]((((((]].....))))))..))))))) Crystal structure of the AU25A/A46G/C74U mutant xpt-pbuX guanine riboswitch aptamer domain in complex with 2,6-diaminopurine; U25A/A46G/C74U mutant of the B. subtilis xpt-pbuX guanine riboswitch aptamer domain 4fep B 67 1.65 RF00167 URS000080E331_1423 23485418 0009113 1423 ggacauauauacgcguggauauggcacgcgaguuucuaccgggcaccguaaauguccgauuaugucc <<<<<<<....<<<<<<.....<<>>>>>>.........<<<<<<>>.....>>>>>>..>>>>>>> ((((((((...((((((.....[[)))))).[.....)]((((((]].....))))))..))))))) Crystal structure of the A24U/U25A/A46G/C74U mutant xpt-pbuX guanine riboswitch aptamer domain in complex with 2,6-diaminopurine; A24U/U25A/A46G/C74U mutant of the B. subtilis xpt-pbuX guanine riboswitch aptamer domain 4frg B 84 2.95 RF01689 URS000080E24D_408172 23064232 0010468 408172 ggccuaaaagcauagugggaaagugacgugaaauucguccagaugcgaaagcauacgguuauacuccgaaugccaccuaggcca <<<<<<........<<<<......<<<<.......>>>>.((<<<<....>>>>.<<<.....))>>>....>>>>.>>>>>>. ((((((....[...((((....(.((((.......)))))[[((((....)))).(((.....]])))...])))).)))))). Crystal structure of the cobalamin riboswitch aptamer domain; cobalamin riboswitch aptamer domain 4frg X 84 2.95 RF01689 URS000080E24D_408172 23064232 0010468 408172 ggccuaaaagcauagugggaaagugacgugaaauucguccagaugcgaaagcauacgguuauacuccgaaugccaccuaggcca <<<<<<........<<<<......<<<<.......>>>>.((<<<<....>>>>.<<<.....))>>>....>>>>.>>>>>>. ((((((....[...((((....(.((((.......)))))[[((((....)))).(((.....]])))...])))).)))))). Crystal structure of the cobalamin riboswitch aptamer domain; cobalamin riboswitch aptamer domain 4frn A 102 3.43 RF01689 URS000080E2FA_408172 23064232 0010468 408172 gggcuaaaagcauggugggaaagugacguguaauucguccacauuacuugauacgguuauacuccgaaugccaccuagcccaaaguagagcaaggagacuca <<<<<<.......<<<<<......<<<<.......>>>>.[.<<{.((((>>.<<<......]>>>....>>>>>>>>>>>......<<<))))...}>>>. ((((((....{..(((((....(.((((.......))))){.(([.[[[[)).(((......})))...})))))))))))......(((]]]]...]))). Crystal structure of the cobalamin riboswitch regulatory element; Cobalamin riboswitch aptamer domain 4frn B 102 3.43 RF01689 URS000080E2FA_408172 23064232 0010468 408172 gggcuaaaagcauggugggaaagugacguguaauucguccacauuacuugauacgguuauacuccgaaugccaccuagcccaaaguagagcaaggagacuca <<<<<<.......<<<<<......<<<<.......>>>>.[.<<{.((((>>.<<<......]>>>....>>>>>>>>>>>......<<<))))...}>>>. ((((((....{..(((((....(.((((.......))))){.(([.[[[[)).(((......})))...})))))))))))......(((]]]]...]))). Crystal structure of the cobalamin riboswitch regulatory element; Cobalamin riboswitch aptamer domain 4gcw B 55 3.0 RF00005 URS000080DEE6_1423 22940585 0030533 0006412 1423 gcuuccauagcucagcagguagagcagucagcgguucgagcccgcuuggaagcnn <<<<<<<..<<<<........>>>>....<<<<<.......>>>>>>>>>>>>.. (((((((...(.......[....).....(((((..]....)))))))))))).. Crystal structure of RNase Z in complex with precursor tRNA(Thr); TRNA(THR) 4jxx B 71 2.3 RF00005 URS00004FF598_562 23727144 0030533 0006412 562 gggguaucgccaagcgguaaggcaccggauucugauuccggcccgagguucgaauccucguaccccagcca <<<<<<..<<<.........>>>.<<<<<.......>>>>>..<<<<<.......>>>>>>>>>>>..... ((((((..(((.....[...))).(((((.......)))))..(((((..]....)))))))))))..... Crystal structure of E coli E. coli glutaminyl-tRNA synthetase bound to tRNA(Gln)(CUG) and ATP from novel cryostabilization conditions; RNA (71-MER) 4jxz B 71 2.4 RF00005 URS000080DDF6_32630 23727144 0030533 0006412 32630 gggguaucgccaagcgguaaggcaccgguuuuugauaccggccgcagguucgaauccugcuaccccagcca <<<<<<..<<<.........>>>.<<<<<.......>>>>>..<<<<<.......>>>>>>>>>>>..... ((((((..(((.....[...))).(((((.......)))))..(((((..]....)))))))))))..... Structure of E. coli glutaminyl-tRNA synthetase bound to ATP and a tRNA(Gln) acceptor containing a UUG anticodon; RNA (71-MER) 4jyz B 72 2.5 RF00005 URS000080DDF6_562 23727144 0030533 0006412 562 gggguancgccaagcngnaaggcaccggununugnuaccggcacgcaggnucgaauccugcuaccccagcca <<<<<<..<<<.........>>>.<<<<<.......>>>>>...<<<<<.......>>>>>>>>>>>..... ((((((..(((.....[...))).(((((.......)))))...(((((..]....)))))))))))..... Crystal structure of E. coli glutaminyl-tRNA synthetase bound to ATP and native tRNA(Gln) containing the cmnm5s2U34 anticodon wobble base; RNA (72-MER) 4kqy A 119 3.02 RF00162 URS000080DDBE_1192196 20951706 0010468 1192196 guucuuaucaagagaagcagagggacuggcccgacgaagcuucagcaaccgguguaauggcgaaagccaugaccaaggugcuaaauccagcaagcucgaacagcuuggaagauaagaac <<<<<<<<<....<<<<<...<<<.((((>>>......>>>>><<<<.<<<<<...<<<<<....>>>>>.>>>..>>>>>>....))))<<<<<.......>>>>>...>>>>>>>>> (((((((((....(((((...(((.[[[[)))......)))))(((..(((((...(((((....))))).)))..)).)))...(]]]](((((.......)))))..)))))))))) Bacillus subtilis yitJ S box/SAM-I riboswitch; YitJ S box/SAM-I riboswitch 4kr2 C 69 3.292 RF00005 URS0000305D7E_9606 24898252 0030533 0006412 9606 ncgccgcugguguagugguaucaugcaagauucccauucuugcgacccggguucgauucccgggcggcg .<<<<<<..<<<.........>>><<<<<<.......>>>>>>...<<<<<.......>>>>>>>>>>> .((((((..(((.....[...)))((((((.......))))))....((((..]....)))).)))))) Glycyl-tRNA synthetase in complex with tRNA-Gly; Gly-tRNA-CCC 4kr3 C 70 3.235 RF00005 URS0000305D7E_9606 24898252 0030533 0006412 9606 ncgccgcugguguagugguaucaugcaagauucccauucuugcgacccggguucgauucccgggcggcgc <<<<<<<..<<<.........>>><<<<<<.......>>>>>>...<<<<<.......>>>>>>>>>>>> (((((((..(((.........)))((((((.......))))))...(((((.......)))))))))))) Glycyl-tRNA synthetase mutant E71G in complex with tRNA-Gly; Gly-tRNA-CCC 4kzz j 75 7.0305 RF00005 URS0000326EAC_9606 23873042 0030533 0006412 9606 agcagaguggcgcagcggaagcgugcugggcccauaacccagaggucgauggaucgaaaccauccucugcuacca <<<<<<<..<<<<.......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((....[..)))).(((((.......))))).....(((((..]....)))))))))))).... Rabbit 40S ribosomal subunit in complex with mRNA, initiator tRNA and eIF1A; initiator Met-RNA-i 4l47 QV 77 3.22 RF00005 URS000041AF00_300852 25128388 0030533 0006412 300852 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U on the Ribosome; P-site tRNA fMet 4l47 XV 77 3.22 RF00005 URS000041AF00_300852 25128388 0030533 0006412 300852 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U on the Ribosome; P-site tRNA fMet 4l71 QV 77 3.9 RF00005 URS000041AF00_562 25128388 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-A on the Ribosome; P-site tRNA fMet 4l71 XV 77 3.9 RF00005 URS000041AF00_562 25128388 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-A on the Ribosome; P-site tRNA fMet 4l81 A 96 2.95 RF01725 URS000080E18F_256318 24753586 0010468,0046500 256318 ggaucacgagggggagaccccggcaaccugggacggacacccaaggugcucacaccggagacgguggauccggcccgagagggcaacgaaguccgu <<<<<....<<<<....>>>><<<<.<<<<<<.((((..>>>.>>>>>>>..<<<<<....>>>>>>>>>>.<<<<....>>>>.......)))). (((((....((((....))))(((..((((((.[[[[..))).))).)))..(((((....)))))))))).((((....)))).......]]]]. Structure of the SAM-I/IV riboswitch (env87(deltaU92, deltaG93)); SAM-I/IV variant riboswitch aptamer domain 4l8r A 26 2.6 RF00032 URS000233597C_9606 23329046 0006398 9606 ccaaaggcucuuuucagagccaccca .....<<<<<<....>>>>>>..... .....((((((....))))))..... Structure of mrna stem-loop, human stem-loop binding protein and 3'hexo ternary complex; HISTONE MRNA STEM-LOOP 4l8r D 19 2.6 URS000233597C_9606 23329046 0006398 9606 cucuuuucagagccaccca .<<<....>>>........ ((((....))))....... Structure of mrna stem-loop, human stem-loop binding protein and 3'hexo ternary complex; HISTONE MRNA STEM-LOOP 4lck B 75 3.2 RF00005 URS000080DE51_182710 23892783 0030533 0006412 182710 gaguaguucagugguagaacaccaccuugccaaggugggggucgcggguucgaaucccgucucgggcgaaagccc <<<..<<<<.......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>><<<<....>>>> (((..((((....[..)))).(((((.......))))).....(((((..]....))))))))((((....)))) Co-crystal structure of a T-box riboswitch stem I domain in complex with its cognate tRNA; tRNA-Gly 4lck E 75 3.2 RF00005 URS000080DE51_182710 23892783 0030533 0006412 182710 gaguaguucagugguagaacaccaccuugccaaggugggggucgcggguucgaaucccgucucgggcgaaagccc <<<..<<<<.......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>><<<<....>>>> (((..((((....[..)))).(((((.......))))).....(((((..]....))))))))((((....)))) Co-crystal structure of a T-box riboswitch stem I domain in complex with its cognate tRNA; tRNA-Gly 4lel QV 77 3.9 RF00005 URS000041AF00_83333 25128388 0030533 0006412 83333 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCG-G on the Ribosome; P-site tRNA fMet 4lel XV 77 3.9 RF00005 URS000041AF00_83333 25128388 0030533 0006412 83333 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCG-G on the Ribosome; P-site tRNA fMet 4lfz QV 77 3.92 RF00005 URS000041AF00_83333 25128388 0030533 0006412 83333 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U in the Absence of Paromomycin; P-site tRNA fMet 4lfz XV 77 3.92 RF00005 URS000041AF00_83333 25128388 0030533 0006412 83333 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U in the Absence of Paromomycin; P-site tRNA fMet 4lnt QV 77 2.94 RF00005 URS000041AF00_83333 25128388 0030533 0006412 83333 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the Ribosome; P-site tRNA fMet 4lnt XV 77 2.94 RF00005 URS000041AF00_83333 25128388 0030533 0006412 83333 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the Ribosome; P-site tRNA fMet 4lsk QV 77 3.48001 RF00005 URS000041AF00_83333 25128388 0030533 0006412 83333 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal Structure of tRNA Proline (CGG) Bound to Codon CCG-G on the Ribosome; P-site tRNA fMet 4lsk XV 77 3.48001 RF00005 URS000041AF00_83333 25128388 0030533 0006412 83333 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal Structure of tRNA Proline (CGG) Bound to Codon CCG-G on the Ribosome; P-site tRNA fMet 4lt8 QV 77 3.14 RF00005 URS000041AF00_83333 25128388 0030533 0006412 83333 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-G on the Ribosome; P-site tRNA fMet 4lt8 XV 77 3.14 RF00005 URS000041AF00_83333 25128388 0030533 0006412 83333 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-G on the Ribosome; P-site tRNA fMet 4lvv A 89 2.1 RF01831 URS000080DF21_1309 24388757,21906956 0046653 1309 ggagaguagaugauucgcguuaagugugugugaaugggaugucgucacacaacgaagcgagagcgcggugaaucauugcauccgcucca <<<<....<<<<<<<<<<<<....<<<<<<<<<.<.(((((..>>>>>>>>.>>..<<....>>>>>.>>>>>>>>>.))))).>>>>. ((((....((((((((((((......(((((((...[[[[[...))))))).....((....))))).))))))))).]]]]].)))). Structure of the THF riboswitch; THF riboswitch 4lvw A 89 1.768 RF01831 URS000080DF21_1309 24388757,21906956 0046653 1309 ggagaguagaugauucgcguuaagugugugugaaugggaugucgucacacaacgaagcgagagcgcggugaaucauugcauccgcucca <<<<....<<<<<<<<<<<<....<<<<<<<<<.<.(((((..>>>>>>>>.>>..<<....>>>>>.>>>>>>>>>.))))).>>>>. ((((....((((((((((((......(((((((...[[[[[...))))))).....((....))))).))))))))).]]]]].)))). Structure of the THF riboswitch bound to 7-deazaguanine; THF riboswitch 4lvx A 89 1.9 RF01831 URS000080DF21_1309 24388757,21906956 0046653 1309 ggagaguagaugauucgcguuaagugugugugaaugggaugucgucacacaacgaagcgagagcgcggugaaucauugcauccgcucca <<<<....<<<<<<<<<<<<....<<<<<<<<<.<.(((((..>>>>>>>>.>>..<<....>>>>>.>>>>>>>>>.))))).>>>>. ((((....((((((((((((......(((((((...[[[[[...))))))).....((....))))).))))))))).]]]]].)))). Structure of the THF riboswitch bound to tetrahydrobiopterin; THF riboswitch 4lvy A 89 2.0 RF01831 URS000080DF21_1309 24388757,21906956 0046653 1309 ggagaguagaugauucgcguuaagugugugugaaugggaugucgucacacaacgaagcgagagcgcggugaaucauugcauccgcucca <<<<....<<<<<<<<<<<<....<<<<<<<<<.<.(((((..>>>>>>>>.>>..<<....>>>>>.>>>>>>>>>.))))).>>>>. ((((....((((((((((((......(((((((...[[[[[...))))))).....((....))))).))))))))).]]]]].)))). Structure of the THF riboswitch bound to pemetrexed; THF riboswitch 4lvz A 89 1.77 RF01831 URS000080DF21_1309 24388757,21906956 0046653 1309 ggagaguagaugauucgcguuaagugugugugaaugggaugucgucacacaacgaagcgagagcgcggugaaucauugcauccgcucca <<<<....<<<<<<<<<<<<....<<<<<<<<<.<.(((((..>>>>>>>>.>>..<<....>>>>>.>>>>>>>>>.))))).>>>>. ((((....((((((((((((......(((((((...[[[[[...))))))).....((....))))).))))))))).]]]]].)))). Structure of the THF riboswitch bound to 2,6-diaminopurine; THF riboswitch 4lw0 A 89 1.889 RF01831 URS000080DF21_1309 24388757,21906956 0046653 1309 ggagaguagaugauucgcguuaagugugugugaaugggaugucgucacacaacgaagcgagagcgcggugaaucauugcauccgcucca <<<<....<<<<<<<<<<<<....<<<<<<<<<.<.(((((..>>>>>>>>.>>..<<....>>>>>.>>>>>>>>>.))))).>>>>. ((((....((((((((((((......(((((((...[[[[[...))))))).....((....))))).))))))))).]]]]].)))). Structure of the THF riboswitch bound to adenine; THF riboswitch 4lx5 A 71 2.13 RF00167 URS000080E373_672 24971878 0009113 672 ggcuucauauaauccgaaugauaugguuucggagcuuccaccaagagccuuaaacucuugauuaugaaguc <<<<<<<<<...<<<<<<......<<.>>>>>>........<<<<<<>>.....>>>>>>..>>>>>>>>> ((((((((((..((((((......[[.))))))[.....)]((((((]].....))))))..))))))))) X-ray crystal structure of the M6"" riboswitch aptamer bound to pyrimido[4,5-d]pyrimidine-2,4-diamine (PPDA); Mutated adenine riboswitch aptamer 4lx6 A 71 2.15 RF00167 URS000080DD7A_672 24971878 0009113 672 ggcuucauauaauccgaaugauaugguuucggagcuuccaccaagagccuuaaacucuugacuaugaaguc <<<<<<<<<...<<<<<<......<<.>>>>>>........<<<<<<>>.....>>>>>>..>>>>>>>>> ((((((((((..((((((......[[.))))))[.....)]((((((]].....))))))..))))))))) X-ray crystal structure of the M6C"" riboswitch aptamer bound to 2-aminopyrimido[4,5-d]pyrimidin-4(3H)-one (PPAO); Mutated adenine riboswitch aptamer 4meg B 121 3.1 RF00234 URS000080E1A0_119072 24096303 0003824 0010468 119072 cuuuaaguugacgagggcaggguuaaacgagacaucggcgagugcccugcggucuuccugcgaccguuagaggacugguaaaaccacaggcgacuguggcauagagcaguccgggcaggaa ...........((....<<<<<<....))..............>>>>>>(((((.<<<<<<))))).....<<<<<<......<<<<<<....>>>>>>.......>>>>>>..>>>>>>. ...........[[....((((((....]]..............))))))[[[[[.((((((]]]]].....((((((......((((((....)))))).......))))))..)))))). In vitro evolved glmS ribozyme triple mutant, magnesium ion complex; (121-MER) ribozyme 4meh B 122 3.12 RF00234 URS000080E1A0_119072 24096303 0003824 0010468 119072 ggcuuuaaguugacgagggcaggguuaaacgagacaucggcgagugcccugcggucuccugcgaccguuagaggacugguaaaaccacaggcgacuguggcauagagcaguccgggcaggaa .............((....<<<<<<....))..............>>>>>>(((((<<<<<<))))).....<<<<<<......<<<<<<....>>>>>>.......>>>>>>..>>>>>>. .............[[....((((((....]]..............))))))(((((.[[[[[))))).....((((((......((((((....)))))).......))))))..]]]]].. In vitro evolved glmS ribozyme triple mutant, calcium ion complex; (122-MER) ribozyme 4mgm A 63 3.2 RF00005 URS000015A751_1462 24095061 0030533 0006412 1462 gcggaaguaguucagugguagaacaccaccggugggucgcggguucgagucccgucuuccgcu <<<<<<<..<<<<.......>>>>.<<<<..>>>>...<<<<<.......>>>>>>>>>>>>. (((((((..((((....[..)))).((((()))))...(((((..]....)))))))))))). Crystal structure of the in vitro transcribed G. kaustophilus tRNA-Gly; tRNA glycine 4mgm B 63 3.2 RF00005 URS000015A751_1462 24095061 0030533 0006412 1462 gcggaaguaguucagugguagaacaccaccggugggucgcggguucgagucccgucuuccgcu <<<<<<<..<<<<.......>>>>.<<<<..>>>>...<<<<<.......>>>>>>>>>>>>. (((((((..((((....[..)))).((((()))))...(((((..]....)))))))))))). Crystal structure of the in vitro transcribed G. kaustophilus tRNA-Gly; tRNA glycine 4mgn B 72 3.2 RF00005 URS000015A751_1462 24095061 0030533 0006412 1462 ncggaaguaguucagugguagaacaccaccuugccaaggugggggucgcggguucgagucccgucuuccgcu <<<<<<<..<<<<.......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>. (((((((..((((....[..)))).(((((.......))))).....(((((..]....)))))))))))). Co-crystal structure of the G. kaustophilus glyQS T box riboswitch Stem I in complex with tRNA; tRNA-glycine 4mgn D 73 3.2 RF00005 URS000015A751_1462 24095061 0030533 0006412 1462 ncggaaguaguucagugguagaacaccaccuugccaaggugggggucgcggguucgagucccgucuuccgcuc <<<<<<<..<<<<.......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.. (((((((..((((....[..)))).(((((.......))))).....(((((..]....)))))))))))).. Co-crystal structure of the G. kaustophilus glyQS T box riboswitch Stem I in complex with tRNA; tRNA-glycine 4n0t B 65 1.7 RF00026 URS000080E120_559292 24837192 0030621 0000244,0000353 0005688,0046540 559292 ggucaauuugaaacaauacagagaugaucagcgguuccccuggaugaaccguuuuacaaagagac .<<<..<<<<...................<<<<<<<<.<<.>>..>>>>>>>>...>>>>..>>> .(((..((((...................(((((.((.((.))..)).)))))...))))..))) Core structure of the U6 small nuclear ribonucleoprotein at 1.7 Angstrom resolution; U6 snRNA 4oqu A 97 3.2 RF01725 URS000080E2F6_256318 24753586 0010468,0046500 256318 ggaucacgagggggagaccccggcaaccugggacggacacccaaggugcucacaccggagacgguggauccggcccgagagggcaacgaagguccga <<<<<....<<<<....>>>><<<<.<<<<<<.(((((.>>>.>>>>>>>..<<<<<....>>>>>>>>>>.<<<<....>>>>.......))))). (((((....((((....))))(((..((((((.[[[[[.))).))).)))..(((((....)))))))))).((((....)))).......]]]]]. Structure of the SAM-I/IV riboswitch (env87(deltaU92)); SAM-I/IV riboswitch 4p3e A 124 3.5 RF00017,RF01856 URS000080DE0E_9606 24700861 0006617 0005786 9606 gacuaaguucggcaucaauauggugaccucccgggagcgggggaccaccagguugccuaaggaggggugaaccggcccaggucggaaacggagcaggucaaaacucccgugcugaucaguaguu <<<<.<..<<<<<<<<<<<.<<<<<..<<<<<<....>>>>>>..>>>>>.>>>>........<<<<<......<<<....<<<....>>>....>>>....>>>>>.>>>>>>>....>>>>> (.((..(.(((((((((((.(((((..((((((....))))))..))))).))))......(.(((((.....((((....(((....)))....))))...))))))))))))).)...)).) Structure of the human SRP S domain; SRP RNA (124-mer) 4p5j A 84 1.9912 RF00233 URS0002335935_12154 24909993,20398674,19144910 0006417 12154 agcucgccaguuagcgaggucugucucgacacgacagauaaucgggugcaacucccgccccucuuccgagggucaucggaaccn ..<<<<<......>>>>><<<<<<<.......>>>>>>>...<<<<.......>>>>(((...<<<<<<)))...>>>>>>... .[(((((..[...)))))(((((((.......)))))))...((((..]....))))[[[...((((((]]].].))))))... Crystal structure of the tRNA-like structure from Turnip Yellow Mosaic Virus (TYMV), a tRNA mimicking RNA; Turnip yellow mosaic virus mRNA for the coat protein 4p6f QV 77 3.6 RF00005 URS000041AF00_511145 25198768 0030533 0006412 511145 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the peptolide 12C bound to bacterial ribosome; tRNA-fMet 4p6f QW 76 3.6 RF00005 URS00005AA258_511145 25198768 0030533 0006412 511145 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((........)))).((((.........)))).....(((((.......)))))))))))).... Crystal structure of the peptolide 12C bound to bacterial ribosome; E-Site tRNA-Phe or A-Site tRNA-Phe 4p6f QY 17 3.6 RF00005 URS00005AA258_511145 25198768 0030533 0006412 511145 gggauugaaaaucccca .<<<<.....>>>>... .(((.......)))... Crystal structure of the peptolide 12C bound to bacterial ribosome; E-Site tRNA-Phe or A-Site tRNA-Phe 4p6f XV 77 3.6 RF00005 URS000041AF00_511145 25198768 0030533 0006412 511145 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the peptolide 12C bound to bacterial ribosome; tRNA-fMet 4p6f XW 76 3.6 RF00005 URS00005AA258_511145 25198768 0030533 0006412 511145 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<.........>>>>>>>>>>>.... ((((.((..((((........)))).((((.........)))).....(((.(.......).))))).)))).... Crystal structure of the peptolide 12C bound to bacterial ribosome; E-Site tRNA-Phe or A-Site tRNA-Phe 4p6f XY 17 3.6 RF00005 URS00005AA258_511145 25198768 0030533 0006412 511145 gggauugaaaaucccca .<<<<.....>>>>... .(((.......)))... Crystal structure of the peptolide 12C bound to bacterial ribosome; E-Site tRNA-Phe or A-Site tRNA-Phe 4p70 QV 77 3.68 RF00005 URS000041AF00_1110693 25128388 0030533 0006412 1110693 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal Structure of Unmodified tRNA Proline (CGG) Bound to Codon CCG on the Ribosome; P-site tRNA fMET 4p70 XV 77 3.68 RF00005 URS000041AF00_1110693 25128388 0030533 0006412 1110693 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal Structure of Unmodified tRNA Proline (CGG) Bound to Codon CCG on the Ribosome; P-site tRNA fMET 4p8z A 188 3.85 RF01807 URS000080DE6F_5793 24821772 0008380 5793 gguuggguugggaaguaucauggcuaaucaccaugaugcaaucggguugaacacuuaauuggguuaaaacggugggggacgaucccguaacauccguccuaacggcgacagacugcacggcccugccucuuagguguguccaaugaacagucguuccgaaaggaagcauccgguaucccaagacaauc <<<<<..<<<<<..<<<<<<<<<...(((.>>>>>>>>>..<<<<.<<<.<<<<......<<<<<...<<<<..<<<...)))>>>.......>>>><<....>>.....(((((...>>>>>.<<<.....>>>>>>>.>>>....))))).<<<<....>>>>....>>>>...>>>>>..>>>>> (((((..(((((..(((((((((...[[[.)))))))))..((((.(((.((((......(((((...((((..(((...]]]))).......))))((....)).....[[[[[...))))).(((.....))))))).)))....]]]]].((((....))))....))))...)))))..))))) Speciation of a group I intron into a lariat capping ribozyme; Didymium iridis partial IGS, 18S rRNA gene, I-DirI gene and partial ITS1 4p9r A 189 2.703 RF01807 URS000080E1A7_5793 24821772 0008380 5793 cauccgguaucccaagacaaucucggguuggguugggaaguaucauggcuaaucaccaugaugcaaucggguugaacacuuaauuggguuaaaacggugggggacgaucccguaacauccguccuaacggcgacagacugcacggcccugccucagguguguccaaugaacagucguuccgaaaggaag ...<<<<...<<<<<..<<<<.....>>>>..>>>>>..<<<<<<<<<...<<<.>>>>>>>>>..>>>>.[[[.<<<<......<<<<<...<<<<..(((...>>>))).......>>>><<....>>.....(((((...>>>>>.<<<<.>>>>>>>>.]]]....))))).<<<<....>>>>. ..{((((...(((((..(((((...)))))..)))))..(((((((((...[[[.)))))))))..)))).(((.((((......(((((}..((((..(((...]]]))).......))))((....)).....[[[[[...))))).((((.)))))))).)))....]]]]].((((....)))). Speciation of a group I intron into a lariat capping ribozyme (Heavy atom derivative); RNA (189-MER) 4qei C 69 2.875 RF00005 URS0000868523_9606 26797133 0030533 0006412 9606 ncgccgcugguguagugguaucaugcaagauucccauucuugcgacccggguucgauucccgggcggcg .<<<<<<..<<<.........>>><<<<<<.......>>>>>>...<<<<<.......>>>>>>>>>>> .((((((..(((.....[...)))((((((.......))))))...(((((..]....))))))))))) Two distinct conformational states of GlyRS captured in crystal lattice; tRNA-Gly-CCC-2-2 4qk8 A 122 3.05 RF00379 URS00021ED98F_496866 25086507 0180001 0010468 496866 nguugccgaauccgaaagguacggaggaaccgcuuuuugggguuaaucugcagugaagcugcaguagggauaccuucugucccgcacccgacagcuaacuccggaggcaauaaaggaaggan ...[[[[....<<....>>..(((((....{........[[[[....<<<<<<.....>>>>>>..(((((.<<<<<<)))))..]]]]....}....)))))..]]]].....>>>>>>.. ...((((....((....))..(((((....(.....{.(((((....((((((.....))))))..(((((.[[[[[[)))))..)))).}).)....)))))..)))).....]]]]]].. Thermoanaerobacter pseudethanolicus c-di-AMP riboswitch; C-di-AMP riboswitch 4qk9 A 117 3.05 RF00379 URS00021ED9C8_336261 25086507 0180001 0010468 336261 cgcugaauucccugaagggaaacgggggacccaauggggugaaucccacguaaguggguagggcuagucucuuucggcccgaacccgucagcuaaccucguaagcguggaaagaggn [[[[...<<<<<....>>>>>((((((....{....[[[[....<<<<<....>>>>>..(((((...<<<<<<<)))))..]]]]....}....)))))).]]]]..>>>>>>>.. ((((...(((((....)))))((((((....(...(((((....(((((....)))))..(((((...[[[[[[[)))))..))))..).)....)))))).))))..]]]]]]].. Thermovirga lienii c-di-AMP riboswitch; C-di-AMP riboswitch 4qka A 120 3.2 RF00379 URS00021ED98F_496866 25086507 0180001 0010468 496866 nguugccgaauccgaaagguacggaggaaccgcuuuuugggguuaaucugcaguagcugcaguagggauaccuucugucccgcacccgacagcuaacuccggaggcaauaaaggaaggan ...[[[[....<<....>>..(((((....{........[[[[....<<<<<<...>>>>>>..(((((.<<<<<<)))))..]]]]....}....)))))..]]]].....>>>>>>.. ...((((....((....))..(((((....(.....{.(((((....((((((...))))))..(((((.[[[[[[)))))..)))).}).)....)))))..)))).....]]]]]].. c-di-AMP riboswitch from Thermoanaerobacter pseudethanolicus, iridium hexamine soak; C-di-AMP riboswitch 4qlm A 108 2.721 RF00379 URS000080E09A_273068 25086509 0180001 0010468 273068 aucgcugaacgcgggggacccagggggcgaaucucuuccgaaaggaagaguaggguuacuccuucgacccgagcccgucagcuaaccucgcaagcguccgaaggagaa ..[[[[....((((((....{...[[[[....<<<<<<<....>>>>>>>..(((((.<<<<<<<)))))..]]]]....}....)))))).]]]]...>>>>>>>.. ..((((....((((((....(..(((((....(((((((....)))))))..(((((.[[[[[[[)))))..))))..).)....)))))).))))...]]]]]]].. ydao riboswitch binding to c-di-AMP; RNA (108-MER) 4qln A 117 2.65 RF00379 URS000080E09A_273068 25086509 0180001 0010468 273068 gaucgcugaacccgaaggggcgggggacccagggggcgaaucucuuccgaaaggaagaguaggguuacuccuucgacccgagcccgucagcuaaccucgcaagcguccgaaggagaa ...[[[[...<<<...>>>((((((....{...[[[[....<<<<<<<....>>>>>>>..(((((.<<<<<<<)))))..]]]]....}....)))))).]]]]...>>>>>>>.. ...((((...(((...)))((((((....(..(((((....(((((((....)))))))..(((((.[[[[[[[)))))..))))..).)....)))))).))))...]]]]]]].. structure of ydao riboswitch binding with c-di-dAMP; RNA (117-MER) 4qoz A 26 2.304 RF00032 URS000233597C_9606 25002523 0006398 9606 ccaaaggcucuuuucagagccaccca .....<<<<<<....>>>>>>..... .....((((((....))))))..... Crystal structure of the histone mRNA stem-loop, stem-loop binding protein (phosphorylated), and 3'hExo ternary complex; histone mRNA stem-loop 4qoz D 18 2.304 URS000233597C_9606 25002523 0006398 9606 ucuuuucagagccaccca <<<....>>>........ (((....)))........ Crystal structure of the histone mRNA stem-loop, stem-loop binding protein (phosphorylated), and 3'hExo ternary complex; histone mRNA stem-loop 4r0d A 617 3.676 RF02012,RF00029 URS000080DD74_2885 25252982 0000373 2885 gugcgacaagaaguucaggaagggauugaggugaaaguccuccucccgaaucguucaugggagagucuauccagacuugcguagcgaguaaucgcuaggugagaagcucuggagacaauguaccugcccuucaauuggaggugccagggcuaggcuuuguuccuauggcuagcgaaagcgaauacagguuauaggcgucgugaaaacaaaacucuuucgacauaagggagagguagaugaguuacccuccuuuuuaugggguaacugaacgaucaauaucuaccggcguagacugugagccuaaaggaaacgaaugaaagugucccuuccugggaacuugguaagcccaauagacucccucugggaaaccagaggaggaguaagagcaaucuuacuuaucgucuaguggguaaaagacauaauaggaagcaaaugcuugguuguaacgaucgagauagaaucuguugauuuaagcugaaaggcugcagacuuauuaaauggguguucugcuguauggcguucgcgccuaagcagcagaaugcgugagccgugugcgaugaaagucgcaagcacgguucugauggggggaaaacgagagaucgucuaccuauccaacu ..[[..<<<....<<<<<<<<<<<<<.<<<<.......>>>><<<<<<.(((({{..>>>>>><<<<<.<<<<<<<<<<<.<<<<<<....>>>>>>.>>>>>..]]>>>>>>......<<.<<......<<....>>........>>>>.>>>>>..<<<<<<..<<<<.<<....>>...<<<<<......(<<<<<...............<<<........>>>....<<<<<<.<<<<<<<<<.).......>>>>>>>>>}}.))))....>>>>>>.>>>>>...>>>>>>>>>...>>>.>>>..........>>>>>>>>>>>>>...>>>....<<<<<.<<<<<..<<<<<<<....>>>>>>>..<<<<<<<<....>>>>>>>>...>>>>>.>>>>>........<<<<<....<<.....<<<<<<<.....>>>>>>>...<<<........>>>.<<<<....>>>>>>.....>>>>>.....<<<<<<<<<<<<..<<<<....>>>>...>>>>>>>>>>>>..<<<<<<<<<<<<<<....>>>>>..>>>>>>>>>...<<<.<<<.<.<<<<....>>>>.>.>>>..>>>... ..{{..((((...(((((((((((((.((((.......))))((((((.[[[[[[..))))))(((((.(((((((((((.((((((....)))))).)))))..}}))))))......(..((((.................).))).).)))))..(((((...((((.((....))...(((((......[((((((............(.((...........)).).((((((..(((((((..]........)))))))..]]]]]]....))))))))))))...)))))))))....)).)))..........)))))))))))))..))))....(((((.(((((..(((((((....)))))))..((((((((....))))))))...))))).)))))........(((((....((.....((.((((.....)))).))..[((((...]..)))).((((....)))))).....))))).....((((((((((((..((((....))))...))))))))))))..((.(((((((((((....)))))..)))))).))...(((.(((...(((......)))...)))..)))... Crystal structure of a eukaryotic group II intron lariat; GROUP IIB INTRON LARIAT 4rdx C 77 2.55 RF00005 URS00008116B8_262724 25722375 0030533 0006412 262724 ngugagcguagcucagcugguuagagcaccggacugugguccgggggucguggguucaagucccaucgcucacccca <<<<<<<<..<<<<.........>>>>.<<<<<......>>>>>.....<<<<<.......>>>>>>>>>>>>>... ((((((((..((((.....[...)))).((((........)))).....(((((..]....)))))))))))))... Structure of histidinyl-tRNA synthetase in complex with tRNA(His); tRNA(his) 4rqe B 84 4.0 RF01852,RF00005 URS00008FED48_9606 26433229 0030533 0006412 9606 ggccggaugauccucaguggucuggggugcaggcuaaaccuguagcugucuagcgacagagugguucaauuccaccuuucgggc .<<<<<<....<<<<<<....>>>>>>.<<<<.......>>>>..<<<<<....>>>>>.<<<<.......>>>>..>>>>.>> (.(.(((.(..((((((..[.))))))..((.........))...(((((....))))).((((..]....))))).))).).) human Seryl-tRNA synthetase dimer complexed with two molecules of tRNAsec; selenocysteine tRNA 4rqe D 83 4.0 RF01852,RF00005 URS00008FED48_9606 26433229 0030533 0006412 9606 ggccggaugauccucaguggucuggggugcaggcuaaaccuguagcugucuagcgacagagugguucaauuccaccuuucggg .....<<....<<<<<<....>>>>>>.<<<<<.....>>>>>..<<<<<....>>>>>.<<<.........>>>..>>.... ..(..((.(...(((((..[.)))))...((((.....))))...(((((....))))).((....]......))).))...) human Seryl-tRNA synthetase dimer complexed with two molecules of tRNAsec; selenocysteine tRNA 4rqf C 63 3.503 RF01852,RF00005 URS00008FED48_9606 26433229 0030533 0006412 9606 ggaugauccucaguggucuggggugcaagcugucuagcgacagagugguucaauuccaccuuu .<<....<<<<<<....>>>>>>......<<<<<....>>>>>.<<<<.......>>>>..>> .((.(..((((((....))))))(...).(((((....))))).((((.......))))).)) human Seryl-tRNA synthetase dimer complexed with one molecule of tRNAsec; selenocysteine tRNA 4rzd A 99 2.75 RF02680 URS0000868518_853 26106162 0008616 853 nagcaacuuaggauuuuaggcuccccggcgugucgaaccaugccgggccaaacccauagggcuggcggucccugugcggucaaaauucauccgccggag ((((..((..<<<<<<.))))))<<<<<<<<<......>>>>>>>>>....<<<<<<<<<<........>>>>>>>.>>>..>>>>>>........... [[[[......((((((...]]]](((((((((......)))))))))....((((((((((........))))))).)))..))))))........... Crystal Structure of a PreQ1 Riboswitch; PreQ1-III Riboswitch (Class 3) 4tna A 76 2.5 RF00005 URS000011107D_4932 361973 0030533 0006412 4932 gcggauuuancucagnngggagagcnccaganunaagaunuggagnucnugugnucgnuccacagaauucgcacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).((((.........)))).....(((((..]....)))))))))))).... FURTHER REFINEMENT OF THE STRUCTURE OF YEAST T-RNA-PHE; TRNAPHE 4tra A 76 3.0 RF00005 URS000011107D_4932 3272146 0030533 0006412 4932 gcggauuuancucagnngggagagcnccaganunaagaunuggagnucnugugnucgnuccacagaauucgcacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).((((.........)))).....(((((..]....)))))))))))).... RESTRAINED REFINEMENT OF TWO CRYSTALLINE FORMS OF YEAST ASPARTIC ACID AND PHENYLALANINE TRANSFER RNA CRYSTALS; TRNAPHE 4tua QV 77 3.6 RF00005 URS000041AF00_316385 25352689 0030533 0006412 316385 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of ASL-Thr bound to Codon ACC-A on the Ribosome; P-site tRNA-fMet 4tua XV 77 3.6 RF00005 URS000041AF00_316385 25352689 0030533 0006412 316385 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of ASL-Thr bound to Codon ACC-A on the Ribosome; P-site tRNA-fMet 4tub QV 77 3.6 RF00005 URS000041AF00_1403831 25352689 0030533 0006412 1403831 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of tRNA-Thr bound to Codon ACC-C on the Ribosome; P-site tRNA f-Met 4tub XV 77 3.6 RF00005 URS000041AF00_1403831 25352689 0030533 0006412 1403831 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of tRNA-Thr bound to Codon ACC-C on the Ribosome; P-site tRNA f-Met 4tuc QV 77 3.6 RF00005 URS000041AF00_1403831 25352689 0030533 0006412 1403831 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of ASL-SufJ bound to Codon ACC-A on the Ribosome; P-site tRNA fMet 4tuc XV 77 3.6 RF00005 URS000041AF00_1403831 25352689 0030533 0006412 1403831 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of ASL-SufJ bound to Codon ACC-A on the Ribosome; P-site tRNA fMet 4tud QV 77 3.6 RF00005 URS000041AF00_1403831 25352689 0030533 0006412 1403831 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of ASL-SufJ bound to Codon ACC-C on the Ribosome; P-site tRNA-fMet 4tud XV 77 3.6 RF00005 URS000041AF00_1403831 25352689 0030533 0006412 1403831 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of ASL-SufJ bound to Codon ACC-C on the Ribosome; P-site tRNA-fMet 4tue QV 77 3.5 RF00005 URS000041AF00_181333 25352689 0030533 0006412 181333 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of ASL-SufJ bound to Codon ACC-U on the Ribosome; P-site tRNA-fMet 4tue XV 77 3.5 RF00005 URS000041AF00_181333 25352689 0030533 0006412 181333 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of ASL-SufJ bound to Codon ACC-U on the Ribosome; P-site tRNA-fMet 4tuw D 26 2.902 RF00032 URS000080E236_32630 25002523 0006398 32630 ggccaaaggcccuuuucagggccacc .......<<<<<<....>>>>>>... .......((((((....))))))... drosophila stem-loop binding protein complexed with histone mRNA stem-loop, phospho mimic of TPNK and C-terminal region; HISTONE MRNA 3' STEM LOOP 4tuw C 28 2.902 RF00032 URS0002335968_32630 25002523 0006398 32630 ggccaaaggcccuuuucagggccacccc .......<<<<<<....>>>>>>..... .......((((((....))))))..... drosophila stem-loop binding protein complexed with histone mRNA stem-loop, phospho mimic of TPNK and C-terminal region; HISTONE MRNA 3' STEM LOOP 4tux D 26 3.08 RF00032 URS000080E236_32630 25002523 0006398 32630 ggccaaaggcccuuuucagggccacc .......<<<<<<....>>>>>>... .......((((((....))))))... drosophila stem-loop binding protein complexed with histone mRNA stem-loop; RNA (26-MER) 4tux C 25 3.08 RF00032 URS000080E236_32630 25002523 0006398 32630 ggccaaaggcccuuuucagggccac .......<<<<<<....>>>>>>.. .......((((((....)))))).. drosophila stem-loop binding protein complexed with histone mRNA stem-loop; RNA (26-MER) 4tv0 B 26 2.601 RF00032 URS000080E236_32630 25002523 0006398 32630 ggccaaaggcccuuuucagggccacc .......<<<<<<....>>>>>>... .......((((((....))))))... Drosophila stem-loop binding protein complexed with histone mRNA stem-loop, Selenomethionine derivative; RNA (26-MER) 4tzp B 70 8.503 RF00005 URS000080DE51_1423 25185828,23892783 0030533 0006412 1423 gaguaguucagugguagaacaccaccuugccaaggugggggucgcggguucgaaucccgucucgggcccc <<<..<<<<.......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>><<<.>>> (((..((((....[..)))).(((((.......))))).....(((((..]....))))))))(((.))) As Grown, Untreated Co-crystals of the Ternary Complex Containing a T-box Stem I RNA, its cognate tRNAGly, and B. subtilis YbxF protein; engineered tRNA 4tzp E 75 8.503 RF00005 URS000080DE51_1423 25185828,23892783 0030533 0006412 1423 gaguaguucagugguagaacaccaccuugccaaggugggggucgcggguucgaaucccgucucgggcgaaagccc <<<..<<<<.......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>><<<<....>>>> (((..((((....[..)))).(((((.......))))).....(((((..]....))))))))((((....)))) As Grown, Untreated Co-crystals of the Ternary Complex Containing a T-box Stem I RNA, its cognate tRNAGly, and B. subtilis YbxF protein; engineered tRNA 4tzv B 75 5.03 RF00005 URS000080DE51_1423 25185828,23892783 0030533 0006412 1423 gaguaguucagugguagaacaccaccuugccaaggugggggucgcggguucgaaucccgucucgggcgaaagccc <<<..<<<<.......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>><<<<....>>>> (((..((((....[..)))).(((((.......))))).....(((((..]....))))))))((((....)))) Co-crystals of the Ternary Complex Containing a T-box Stem I RNA, its Cognate tRNAGly, and B. subtilis YbxF protein, treated by removing lithium sulfate post crystallization; engineered tRNA 4tzw B 75 4.671 RF00005 URS000080DE51_1423 25185828,23892783 0030533 0006412 1423 gaguaguucagugguagaacaccaccuugccaaggugggggucgcggguucgaaucccgucucgggcgaaagccc <<<..<<<<.......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>><<<<....>>>> (((..((((....[..)))).(((((.......))))).....(((((..]....))))))))((((....)))) Co-crystals of the Ternary Complex Containing a T-box Stem I RNA, its Cognate tRNAGly, and B. subtilis YbxF protein, treated by removing lithium sulfate and replacing Mg2+ with Sr2+ post crystallization; engineered tRNA 4tzx X 71 2.01 RF00167 URS000080E2A9_672 25185828 0009113 672 gggaagauauaauccuaaugauaugguuugggaguuucuaccaagagccuuaaacucuugauuaucuuccc <<<<<<<<<...<<<<<<......<<.>>>>>>........<<<<<<>>.....>>>>>>..>>>>>>>>> ((((((((((..((((((......[[.))))))[.....)]((((((]].....))))))..))))))))) Vibrio Vulnificus Adenine Riboswitch variant, grown in Mg2+; Vibrio vulnificus Adenine Riboswitch 4tzy X 71 2.57 RF00167 URS000080E2A9_672 25185828 0009113 672 gggaagauauaauccuaaugauaugguuugggaguuucuaccaagagccuuaaacucuugauuaucuuccc <<<<<<<<<...<<<<<<......<<.>>>>>>........<<<<<<>>.....>>>>>>..>>>>>>>>> ((((((((((..((((((......[[.))))))[.....)]((((((]].....))))))..))))))))) Vibrio vulnificus Adenine Riboswitch Variant, grown in both Sr2+ and Mg2+; Vibrio vulnificus Adenine Riboswitch 4tzz B 75 3.64 RF00005 URS000080DE51_1423 25185828 0030533 0006412 1423 gaguaguucagugguagaacaccaccuugccaaggugggggucgcggguucgaaucccgucucgggcgaaagccc <<<..<<<<.......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>><<<<....>>>> (((..((((....[..)))).(((((.......))))).....(((((..]....))))))))((((....)))) Co-crystals of the Ternary Complex Containing a T-box Stem I RNA, its Cognate tRNAGly, and B. subtilis YbxF protein, treated by removing lithium sulfate and increasing PEG3350 concentration from 20% to 45% post crystallization; engineered tRNAGly 4tzz E 75 3.64 RF00005 URS000080DE51_1423 25185828 0030533 0006412 1423 gaguaguucagugguagaacaccaccuugccaaggugggggucgcggguucgaaucccgucucgggcgaaagccc <<<..<<<<.......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>><<<<....>>>> (((..((((....[..)))).(((((.......))))).....(((((..]....))))))))((((....)))) Co-crystals of the Ternary Complex Containing a T-box Stem I RNA, its Cognate tRNAGly, and B. subtilis YbxF protein, treated by removing lithium sulfate and increasing PEG3350 concentration from 20% to 45% post crystallization; engineered tRNAGly 4tzz H 75 3.64 RF00005 URS000080DE51_1423 25185828 0030533 0006412 1423 gaguaguucagugguagaacaccaccuugccaaggugggggucgcggguucgaaucccgucucgggcgaaagccc <<<..<<<<.......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>><<<<....>>>> (((..((((....[..)))).(((((.......))))).....(((((..]....))))))))((((....)))) Co-crystals of the Ternary Complex Containing a T-box Stem I RNA, its Cognate tRNAGly, and B. subtilis YbxF protein, treated by removing lithium sulfate and increasing PEG3350 concentration from 20% to 45% post crystallization; engineered tRNAGly 4tzz K 75 3.64 RF00005 URS000080DE51_1423 25185828 0030533 0006412 1423 gaguaguucagugguagaacaccaccuugccaaggugggggucgcggguucgaaucccgucucgggcgaaagccc <<<..<<<<.......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>><<<<....>>>> (((..((((....[..)))).(((((.......))))).....(((((..]....))))))))((((....)))) Co-crystals of the Ternary Complex Containing a T-box Stem I RNA, its Cognate tRNAGly, and B. subtilis YbxF protein, treated by removing lithium sulfate and increasing PEG3350 concentration from 20% to 45% post crystallization; engineered tRNAGly 4ue4 A 266 7.0 RF01854 URS000086853B_224308 26344568 0006617 0048501 224308 gccgugcuaagcggggagguagcggugcccuguaccugcaauccgcucuagcagggccgaaucccuucucgagguucguuuacuuuaaggccugccuuaaguaagugguguugacguuuggguccugcgcaaugggaauucaugaaccaugucagguccggaaggaagcagcauuaagugaaaccucucaugugccgcaggguugccugggccgagcuaacugcuuaaguaacgcuaggguagcgaaucgacagaaggugcacggu <<<<<<<...<<((((....<<<<<..))))...(((((...>>>>>...)))))>>......<<<<<<...<<<<<<.<<<<<<<<.<...<<<..<<<<<<...<<<..<......<<<<.<<<<<<<<.<<<<<.<<<<<.....<<<<..<.<<<....>>>..>.>>>>...>>>>>...>>>>>..>>.>>>>>>....>>>>....>.>>>...>>>>>>.>>>...>>>>>>>>>>>>>>>...>>>>>>.>>>>>>> (((((((...((((((.......[[..))))...(((((...]]......)))))))......((((((...((((((.((((((((.(..((((.(((((((.(((((.(((..(((((((.((((((((.(((((.(((((.....((((....(((....)))....))))...)))).)..)))))..)).))))))....)))))))))))))).)))))))))))..))))))))))))))))...)))))).))))))) Structural basis for targeting and elongation arrest of Bacillus signal recognition particle; 6S RNA 4ue5 A 299 9.0 RF00017,RF01856 URS0000868546_9615 26344568 0006617 0005786 9615 gccgggcgcgguggcgcgcgccuguagucccagcuacucgggaggcugaggcaggaggaucgcuugagcccaggaguucugggcugcagugcgcuaugccgaucggguguccgcacuaaguucggcaucaauauggugaccucccgggagcgggggaccaccagguugccuaaggaggggugaaccggcccaggucggaaacggagcaggucaaaacucccgugcugaucaguagugggaucgcgccugugaauagccacugcacuccagccugugcaacauagcgagaccccgucucu <<<<<<<<<<......>>>>>>>....<<<<........>>>>>>>.<<<<<.<<....<<<<<...<<.<<<<.....<<<<.<<<<<<<.<<<<<......<<<<<<<<<.<<<<<...<<<<<<<<<<<.<<<<<..<<<<<<....>>>>>>..>>>>>.>>>>........<<<<<.....<<<<....<<<....>>>....>>>>...>>>>>.>>>>>>>....>>>>>>>...>>>>>>>...>>>>>>>>>>>>.>>>>.>>>>.>>.....>>>>>...>>.>>>>>. ((((((((((......)))))))....((((........))))))).(((((.((....(((((...((.((((....(((((.(((((((.(((((......(((((((((.(((((.(.(((((((((((.(((((..((((((....))))))..))))).))))......(.(((((.....((((....(((....)))....))))...))))))))))))).)..)))))))...)))))))...)))))))))))).))))))))).)).....)))))...)).))))). Structural basis for targeting and elongation arrest of Bacillus signal recognition particle; 7S RNA 4ug0 S6 75 3.6 RF00005 URS0000326EAC_9606 25901680 0030533 0006412 9606 agcagaguggcgcagcggaagcgugcugggcccauaacccagaggucgauggaucgaaaccauccucugcuacca <<<<<<<..<<<<.......>>>>.<<<...........>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((...........)).(((...........))).....(((((.......)))))))))))).... STRUCTURE OF THE HUMAN 80S RIBOSOME; HUMAN INITIATOR MET-TRNA-I 4ujc AA 76 9.5 RF00005 URS00005AA258_9986 25064512 0030533 0006412 9986 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... ((((..(..((((.....[..)))).(((((.......))))).....(((((..]....))))))..)))).... mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state; TRNA 4ujc AC 261 9.5 RF00061,RF00620 URS000080E1FF_11103 25064512 0043022 0006417 11103 ccugugaggaacuacugucuucacgcagaaagcgucuagccauggcguuaguaugagugucgugcagccuccaggacccccccucccgggagagccauaguggucugcggaaccggugaguacaccggaaugauuugggcgugcccccgcaagacugcuagccgaguaguguugggucgcgaaaggccuugugguacugccugauagggugcuugcgagugccccgggaggucucguagaccgugcaccaugagcacgaau .<<<.<<<<.....<<<<...<<<.<<....<<<<<.......>>>>>.....>>.>>>....>>>>>>>>>>>.......<<<<<<<<<<<.<<<<<<<<<<<<.<<<<..<<<<<<....>>>>>><<...>>.<<<....>>>>>>>..>>>>>>>><<<.....<<<......>>>....>>>....>>>>.>><<<<....>>>><<.((((((.>>>>>>>>>>>.))))))....................... ((((.((((.....(((.....((.((....(((((.......))))).....)).))......)))))))))))......(((((((((((..((((((.(((((((((..((((((....))))))(((.))).(((....))))))).))))).)))(((.....(((......)))....)))....)))..))((((....))))((.[[[[[[.))))))))))).]]]]]]....................... mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state; HCV-IRES 4ujd BA 76 8.9 RF00005 URS00005AA258_9986 25064512 0030533 0006412 9986 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... ((((..(..((((.....[..)))).(((((.......))))).....(((((..]....))))))..)))).... mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state; TRNA 4ujd BC 261 8.9 RF00061,RF00620 URS000080E1FF_11103 25064512 0043022 0006417 11103 ccugugaggaacuacugucuucacgcagaaagcgucuagccauggcguuaguaugagugucgugcagccuccaggacccccccucccgggagagccauaguggucugcggaaccggugaguacaccggaaugauuugggcgugcccccgcaagacugcuagccgaguaguguugggucgcgaaaggccuugugguacugccugauagggugcuugcgagugccccgggaggucucguagaccgugcaccaugagcacgaau .<<<.<<<<.....<<<<...<<<.<<....<<<<<.......>>>>>.....>>.>>>....>>>>>>>>>>>.......<<<<<<<<<<<.<<<<<<<<<<<<.<<<<..<<<<<<....>>>>>><<...>>.<<<....>>>>>>>..>>>>>>>><<<.....<<<......>>>....>>>....>>>>.>><<<<....>>>><<.((((((.>>>>>>>>>>>.))))))....................... ((((.((((.....(((.....((.((....(((((.......))))).....)).))......)))))))))))......(((((((((((..((((((.(((((((((..((((((....))))))(((.))).(((....))))))).))))).)))(((.....(((......)))....)))....)))..))((((....))))((.[[[[[[.))))))))))).]]]]]]....................... mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state; HCV-IRES 4uje AV 76 6.9 RF00005 URS00005AA258_9986 24995983 0030533 0006412 9986 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).(((((.......))))).....(((((..]....)))))))))))).... Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement; TRNA-LYS 4uje AW 76 6.9 RF00005 URS00005AA258_9913 24995983 0030533 0006412 9913 gcccggauagcucagucgguagagcaggggauugaanauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))).... Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement; TRNA-PHE 4uy8 V 77 3.8 RF00005 URS000034D020_562 25310980 0030533 0006412 562 cggcacguagcgcagccugguagcgcaccgucauggggugucgggggucggaggnucaaauccucucgugccgacca <<<<<<<..<<<<.........>>>>.<<<.<<.....>>.>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((......[..)))).(((.(.......).))).....(((((..]....)))))))))))).... Molecular basis for the ribosome functioning as a L-tryptophan sensor - Cryo-EM structure of a TnaC stalled E.coli ribosome; RNA 4uyj R 110 3.35 RF01857 URS000080DF52_70601 25336584 0006617 0048501 70601 ggggcuaggccgggggguucggcguccccuguaaccggaaaccgccgauaugccggggccgaagcccgaggggcgguucccguaaggguucccacccucgggcgugccun <<<<<..<<<<<<<<<<..(((((>>>>>>....<<<<....))))).....>>>>>>>>...<<<<<<<<<..<<..<<<....>>>..>>..>>>>>>>>>..>>>>> (((((..(((((((((...[[[[[.)))))....((((....]]]]].....))))))))...((((((((((.((..(((....)))..))).)))))))))..))))) Crystal structure of a Signal Recognition Particle Alu domain in the elongation arrest conformation; SRP RNA 4uyj S 110 3.35 RF01857 URS000080DF52_70601 25336584 0006617 0048501 70601 ggggcuaggccgggggguucggcguccccuguaaccggaaaccgccgauaugccggggccgaagcccgaggggcgguucccguaaggguucccacccucgggcgugccun <<<<<..<<<<<<<<<<..(((((>>>>>>....<<<<....))))).....>>>>>>>>...<<<<<<<<<..<<..<<<....>>>..>>..>>>>>>>>>..>>>>> (((((..(((((((((...[[[[[.)))))....((((....]]]]].....))))))))...(((((((((..((..(((....)))..))..)))))))))..))))) Crystal structure of a Signal Recognition Particle Alu domain in the elongation arrest conformation; SRP RNA 4uyk R 134 3.22 RF01857 URS000080E1FA_70601 25336584 0006617 0048501 70601 ggggcuaggccgggggguucggcguccccuguaaccggaaaccgccgauaugccggggccgaagcccgaggggcgguucccgaagccgccucuguaaggaggcgguggaggguucccacccucgggcgugccun <<<<<..<<<<<<<<<<..(((((>>>>>>....<<<<....))))).....>>>>>>>>...<<<<<<<<<..<<..<<<...<<<<<<<<<....>>>>>>>>>...>>>..>>..>>>>>>>>>..>>>>> (((((..(((((((((...[[[[[.)))))....((((....]]]]].....))))))))...(((((((((..((..(((...(((((((((....)))))))))...)))..))..)))))))))..))))) Crystal structure of a Signal Recognition Particle Alu domain in the elongation arrest conformation; SRP RNA 4v3p S2 75 34.0 RF00005 URS00005AD0B9_4565 25376914 0030533 0006412 4565 uccgugauaguuuaauggucagaaugggcgcuugucgcgugccagaucgggguucaauuccccgucgcggagcca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>....<<<<<.......>>>>>>>>>>>>.... (((((((..((((........)))).(((.(.......).)))....(((((.......)))))))))))).... The molecular structure of the left-handed supra-molecular helix of eukaryotic polyribosomes; 40S ribosomal RNA 4v42 AB 76 5.5 RF00005 URS000011107D_274 11283358 0030533 0006412 274 gcggauuuancucagnngggagagcnccaganunaagaunuggagnucnugugnucgnuccacagaauucgcacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).((((.........)))).....(((((..]....)))))))))))).... Crystal structure of the ribosome at 5.5 A resolution.; TRNA(PHE) 4v42 AC 76 5.5 RF00005 URS000011107D_274 11283358 0030533 0006412 274 gcggauuuancucagnngggagagcnccaganunaagaunuggagnucnugugnucgnuccacagaauucgcacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... .((((((..((((.....[..)))).((((.........)))).....(((((..]....)))))))))))..... Crystal structure of the ribosome at 5.5 A resolution.; TRNA(PHE) 4v42 AD 74 5.5 RF00005 URS000080E2DD_274 11283358 0030533 0006412 274 uccguganaacaaagcggnnauguaccggauuuuuauuccggcuaunggggnucaauuccccgucgcggagcca <<<<<<<..<<<.........>>>.<<<<<.......>>>>>....<<<<<.......>>>>>>>>>>>>.... (((((((..(((.....[...))).(((((.......)))))....(((((..]....)))))))))))).... Crystal structure of the ribosome at 5.5 A resolution.; TRNA(PHE) 4v48 A6 76 11.5 RF00005 URS000011107D_562 12809609 0030533 0006412 562 gcggauuuagcucaguugggagagcgccagacugaagaucuggagguccuguguucgauccacagaauucgcacca <<<<<<.<.<<<.........(>>>.<<<<<.......>>>>>....(<<<<<...)..)>>>>>>>>>>>>.... (((.((...(((..........))).((((.........)))).....((((.........)))).)).))).... Real space refined coordinates of the 30S and 50S subunits fitted into the low resolution cryo-EM map of the initiation-like state of E. coli 70S ribosome; tRNA-PHE 4v49 AV 76 8.7 RF00005 URS000011107D_562 12853578 0030533 0006412 562 gcggauuuagcucaguugggagagcgccagacugaagaucuggagguccuguguucgauccacagaauucgcacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... .((((((..((((.....[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal Structure of a Streptomycin Dependent Ribosome from E. Coli 70S Ribosome.; tRNA-Phe 4v49 AW 76 8.7 RF00005 URS000011107D_562 12853578 0030533 0006412 562 gcggauuuagcucaguugggagagcgccagacugaagaucuggagguccuguguucgauccacagaauucgcacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).(((((.......))))).....(((((..]....)))))))))))).... Crystal Structure of a Streptomycin Dependent Ribosome from E. Coli 70S Ribosome.; tRNA-Phe 4v4i z 76 3.71 RF00005 URS00005AA258_562 16962654 0030533 0006412 562 gcccgganagcucagncggnagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).((((.........)))).....(((((..]....)))))))))))).... Crystal Structure of a 70S Ribosome-tRNA Complex Reveals Functional Interactions and Rearrangements.; P-site PHE-tRNA 4v4i 0 76 3.71 RF00005 URS000080E050_262724 16962654 0030533 0006412 262724 gcggauuuagcucaguugggagagcgccagacugaaaaucuggagguccuguguucgauccacagaauucgcacca <<<<<<...<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>.>>>>>>.... (((((((..((((.....[..)))).(((((.......))))).....(((((..]....)))))))))))).... Crystal Structure of a 70S Ribosome-tRNA Complex Reveals Functional Interactions and Rearrangements.; E-TRNA 4v4j z 77 3.83 RF00005 URS00001BBAFC_262724 17940016 0030533 0006412 262724 cgcgggguggagcagccugguagcucgucgggcucauaacccgaagaucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(.(((..]....))).)))))))..... Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.; P-site tRNAfMET 4v4j 2 76 3.83 RF00005 URS000080E050_262724 17940016 0030533 0006412 262724 gcggauuuagcucaguugggagagcgccagacugaaaaucuggagguccuguguucgauccacagaauucgcacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).(((((.......))))).....(((((..]....)))))))))))).... Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.; E-site tRNA 4v4n B1 77 9.0 RF00005 URS00001D39A7_2190 24153188 0030533 0006412 2190 ggggcgguagcucagccugggagagcaccggacugaagauccgggugucggggguucaaaucccccccgccccacca <<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))).... Structure of the Methanococcus jannaschii ribosome-SecYEBeta channel complex; E-tRNA 4v4p BB 76 5.5 RF00005 URS000011107D_300852 15802605 0030533 0006412 300852 gcggauuuagcucaguugggagagcgccagacugaagaucuggagguccuguguucgauccacagaauucgcacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((.(((...(((........)))..((.((.......)).)).....(((((.......)))))))).))).... Crystal structure of 70S ribosome with thrS operator and tRNAs.; tRNA Phe (unmodified bases) 4v4p BC 76 5.5 RF00005 URS000011107D_300852 15802605 0030533 0006412 300852 gcggauuuagcucaguugggagagcgccagacugaagaucuggagguccuguguucgauccacagaauucgcacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... ((.((((..((((.....[..)))).(((((.......))))).....(((((..]....))))))))).)).... Crystal structure of 70S ribosome with thrS operator and tRNAs.; tRNA Phe (unmodified bases) 4v4r AV 76 5.9 RF00005 URS000011107D_562 16377566 0030533 0006412 562 gcggauuuagcucaguugggagagcgccagacugaagaucuggagguccuguguucgauccacagaauucgcacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... .((.(.(..((((........)))).((((.........)))).....((.((.......)).))).).))..... Crystal structure of the whole ribosomal complex.; P-site tRNA (Phe) 4v4r AW 76 5.9 RF00005 URS000011107D_562 16377566 0030533 0006412 562 gcggauuuagcucaguugggagagcgccagacugaanaucuggagguccuguguucgauccacagaauucgcacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... .((((((..((((.....[..)))).((((.........)))).....(.(((..]....))).)))))))..... Crystal structure of the whole ribosomal complex.; E-site tRNA (Phe) 4v4s AV 76 6.76 RF00005 URS000011107D_562 16377566 0030533 0006412 562 gcggauuuagcucaguugggagagcgccagacugaagaucuggagguccuguguucgauccacagaauucgcacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... .((.(.(..((((........)))).((((.........)))).....((.((.......)).))).).))..... Crystal structure of the whole ribosomal complex.; P-site tRNA (Phe) 4v4s AW 76 6.76 RF00005 URS000011107D_562 16377566 0030533 0006412 562 gcggauuuagcucaguugggagagcgccagacugaanaucuggagguccuguguucgauccacagaauucgcacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... .((((((..((((.....[..)))).((((.........)))).....(.(((..]....))).)))))))..... Crystal structure of the whole ribosomal complex.; E-site tRNA (Phe) 4v4t AV 76 6.46 RF00005 URS000011107D_562 16377566 0030533 0006412 562 gcggauuuagcucaguugggagagcgccagacugaagaucuggagguccuguguucgauccacagaauucgcacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... .((.(.(..((((........)))).((((.........)))).....((.((.......)).))).).))..... Crystal structure of the whole ribosomal complex with a stop codon in the A-site.; P-site tRNA (Phe) 4v4t AW 76 6.46 RF00005 URS000011107D_562 16377566 0030533 0006412 562 gcggauuuagcucaguugggagagcgccagacugaanaucuggagguccuguguucgauccacagaauucgcacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... .((((((..((((.....[..)))).((((.........)))).....(.(((..]....))).)))))))..... Crystal structure of the whole ribosomal complex with a stop codon in the A-site.; E-site tRNA (Phe) 4v4v AU 76 15.0 RF00005 URS000011107D_562 16713583,16714018 0030533 0006412 562 gcggauuuagcucaguugggagagcgccagacugaagaucuggagguccuguguucgauccacagaauucgcacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).((((.........)))).....(((((..]....)))))))))))).... Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056; tRNA 4v4v AV 76 15.0 RF00005 URS000011107D_562 16713583,16714018 0030533 0006412 562 gcggauuuagcucaguugggagagcgccagacugaagaucuggagguccuguguucgauccacagaauucgcacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).((((.........)))).....(((((..]....)))))))))))).... Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056; tRNA 4v4v AW 76 15.0 RF00005 URS000011107D_562 16713583,16714018 0030533 0006412 562 gcggauuuagcucaguugggagagcgccagacugaagaucuggagguccuguguucgauccacagaauucgcacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).((((.........)))).....(((((..]....)))))))))))).... Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056; tRNA 4v4w AU 76 15.0 RF00005 URS000011107D_562 16713583,16714018 0030533 0006412 562 gcggauuuagcucaguugggagagcgccagacugaagaucuggagguccuguguucgauccacagaauucgcacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).((((.........)))).....(((((..]....)))))))))))).... Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143; tRNA 4v4w AV 76 15.0 RF00005 URS000011107D_562 16713583,16714018 0030533 0006412 562 gcggauuuagcucaguugggagagcgccagacugaagaucuggagguccuguguucgauccacagaauucgcacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).((((.........)))).....(((((..]....)))))))))))).... Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143; tRNA 4v4w AW 76 15.0 RF00005 URS000011107D_562 16713583,16714018 0030533 0006412 562 gcggauuuagcucaguugggagagcgccagacugaagaucuggagguccuguguucgauccacagaauucgcacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).((((.........)))).....(((((..]....)))))))))))).... Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143; tRNA 4v4x AC 76 5.0 RF00005 URS000041AF00_562 17051149 0030533 0006412 562 cgcgggguggagcagccgguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((.....[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the 70S Thermus thermophilus ribosome showing how the 16S 3'-end mimicks mRNA E and P codons.; tRNA fMET (unmodified bases) 4v4x AD 76 5.0 RF00005 URS000080DFDE_300852 17051149 0030533 0006412 300852 gccgagguagcucaguugguagagcaugcgacugaaaaucgcagugucggcgguucgauuccgcuccucggcacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))).... Crystal structure of the 70S Thermus thermophilus ribosome showing how the 16S 3'-end mimicks mRNA E and P codons.; tRNA PHE (unmodified bases) 4v4y AC 76 5.5 RF00005 URS00005AA258_562 17051149 0030533 0006412 562 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).(((((.......))))).....(((((..]....)))))))))))).... Crystal structure of the 70S Thermus thermophilus ribosome with translocated and rotated Shine-Dalgarno Duplex.; tRNA PHE (unmodified bases) 4v4y AD 76 5.5 RF00005 URS00005AA258_562 17051149 0030533 0006412 562 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).((((((.....)))))).....(((((..]....)))))))))))).... Crystal structure of the 70S Thermus thermophilus ribosome with translocated and rotated Shine-Dalgarno Duplex.; tRNA PHE (unmodified bases) 4v4y AB 76 5.5 RF00005 URS00005AA258_562 17051149 0030533 0006412 562 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))).... Crystal structure of the 70S Thermus thermophilus ribosome with translocated and rotated Shine-Dalgarno Duplex.; tRNA PHE (unmodified bases) 4v4z AC 76 4.51 RF00005 URS000080DFF5_562 17051149 0030533 0006412 562 cgcgggguggagcagccgguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((.....[..)))).(((((.......))))).....(((((..]....)))))))))))..... 70S Thermus thermophilous ribosome functional complex with mRNA and E- and P-site tRNAs at 4.5A.; tRNA fMET (unmodified bases) 4v4z AD 76 4.51 RF00005 URS000080DFDE_300852 17051149 0030533 0006412 300852 gccgagguagcucaguugguagagcaugcgacugaaaaucgcagugucggcgguucgauuccgcuccucggcacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))).... 70S Thermus thermophilous ribosome functional complex with mRNA and E- and P-site tRNAs at 4.5A.; tRNA PHE (unmodified bases) 4v51 AV 77 2.8 RF00005 URS000041AF00_83333 16959973 0030533 0006412 83333 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((.]....)))))))))))..... Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin; P-SITE TRNA FMET (UNMODIFIED BASES EXCEPT FOR THYMINE 54) 4v51 AW 76 2.8 RF00005 URS00005AA258_83333 16959973 0030533 0006412 83333 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((........)))).((((.........)))).....(((((.......)))))))))))).... Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin; E-SITE TRNA PHE OR A-SITE TRNA PHE (UNMODIFIED BASES) 4v51 AY 19 2.8 RF00005 URS00005AA258_83333 16959973 0030533 0006412 83333 aggggauugaaaauccccg .<<<<<<.....>>>>>>. ..(.((.......)).).. Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin; E-SITE TRNA PHE OR A-SITE TRNA PHE (UNMODIFIED BASES) 4v51 CV 77 2.8 RF00005 URS000041AF00_83333 16959973 0030533 0006412 83333 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>......<<<<.......>>>>.>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((.]....)))))))))))..... Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin; P-SITE TRNA FMET (UNMODIFIED BASES EXCEPT FOR THYMINE 54) 4v51 CW 76 2.8 RF00005 URS00005AA258_83333 16959973 0030533 0006412 83333 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((........)))).((((.........)))).....((.(.........).))))))))).... Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin; E-SITE TRNA PHE OR A-SITE TRNA PHE (UNMODIFIED BASES) 4v51 CY 19 2.8 RF00005 URS00005AA258_83333 16959973 0030533 0006412 83333 aggggauugaaaauccccg .<<<<<<.....>>>>>>. ..((((.......)))).. Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin; E-SITE TRNA PHE OR A-SITE TRNA PHE (UNMODIFIED BASES) 4v5a AV 17 3.5 RF00005 URS00005AA258_32630 17660830 0030533 0006412 32630 ggggauugaaaaucccc <<<<<<.....>>>>>> (((((.......))))) Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMet; P-SITE RNA ASL-PHE 4v5a AW 77 3.5 RF00005 URS000041AF00_562 17660830 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<.............>>>>>>>>..... .((((((..((((......[..))))...((.........))...........(..]....)....))))))..... Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMet; TRNA-FMET 4v5a CV 17 3.5 RF00005 URS00005AA258_32630 17660830 0030533 0006412 32630 ggggauugaaaaucccc .<<<<<.....>>>>>. .((((.......)))). Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMet; P-SITE RNA ASL-PHE 4v5a CW 77 3.5 RF00005 URS000041AF00_562 17660830 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucggnucaaauccggcccccgcaacca .<<<<<...<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>.>>>>>..... .(.((.(..((((.........))))..((((.......))))........(.(.......).)...))).)..... Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMet; TRNA-FMET 4v5c AV 77 3.3 RF00005 URS000041AF00_83333 19363482 0030533 0006412 83333 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((.]....)))))))))))..... Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.; P-SITE TRNA FMET 4v5c AW 76 3.3 RF00005 URS00005AA258_83333 19363482 0030533 0006412 83333 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).((((.........)))).....(((((..]....)))))))))))).... Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.; E-SITE TRNA PHE 4v5c CV 77 3.3 RF00005 URS000041AF00_83333 19363482 0030533 0006412 83333 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((.]....)))))))))))..... Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.; P-SITE TRNA FMET 4v5c CW 76 3.3 RF00005 URS00005AA258_83333 19363482 0030533 0006412 83333 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((........)))).((((.........)))).....(((((.......)))))))))))).... Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.; E-SITE TRNA PHE 4v5d AW 76 3.5 RF00005 URS00005AA258_83333 19363482 0030533 0006412 83333 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((........)))).((((.........)))).....((.((.......)).))))))))).... Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.; E-SITE TRNA PHE 4v5d CW 76 3.5 RF00005 URS00005AA258_83333 19363482 0030533 0006412 83333 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((........)))).((((.........)))).....(((((.......)))))))))))).... Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.; E-SITE TRNA PHE 4v5e AV 76 3.45 RF00005 URS00005AA258_83333 18988853 0030533 0006412 83333 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))).... Insights into translational termination from the structure of RF2 bound to the ribosome; E-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES) 4v5e AW 76 3.45 RF00005 URS00005AA258_83333 18988853 0030533 0006412 83333 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.......<<.........>>..>>>>>>>.... ((.(.(...((((........))))..(((.........)).).....(...............).)..))).... Insights into translational termination from the structure of RF2 bound to the ribosome; E-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES) 4v5e CV 76 3.45 RF00005 URS00005AA258_83333 18988853 0030533 0006412 83333 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).(((((.......))))).....(((((..]....)))))))))))).... Insights into translational termination from the structure of RF2 bound to the ribosome; E-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES) 4v5e CW 76 3.45 RF00005 URS00005AA258_83333 18988853 0030533 0006412 83333 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((........)))).((((.........))))........(.........)...))))))).... Insights into translational termination from the structure of RF2 bound to the ribosome; E-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES) 4v5f AV 77 3.6 RF00005 URS000041AF00_83333 19833919 0030533 0006412 83333 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... The structure of the ribosome with elongation factor G trapped in the post-translocational state; E-SITE TRNA FMET OR P-SITE TRNA FMET (UNMODIFIED BASES EXCEPT FOR THYMINE 54) 4v5f AW 77 3.6 RF00005 URS000041AF00_83333 19833919 0030533 0006412 83333 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((....((......[..))...(((.(.......).))).....(.(((..]....))).)))))))..... The structure of the ribosome with elongation factor G trapped in the post-translocational state; E-SITE TRNA FMET OR P-SITE TRNA FMET (UNMODIFIED BASES EXCEPT FOR THYMINE 54) 4v5f CV 77 3.6 RF00005 URS000041AF00_83333 19833919 0030533 0006412 83333 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... The structure of the ribosome with elongation factor G trapped in the post-translocational state; E-SITE TRNA FMET OR P-SITE TRNA FMET (UNMODIFIED BASES EXCEPT FOR THYMINE 54) 4v5f CW 77 3.6 RF00005 URS000041AF00_83333 19833919 0030533 0006412 83333 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((.(..((((......[..)))).(((((.......))))).......(((..]....)))..).))))..... The structure of the ribosome with elongation factor G trapped in the post-translocational state; E-SITE TRNA FMET OR P-SITE TRNA FMET (UNMODIFIED BASES EXCEPT FOR THYMINE 54) 4v5g AV 76 3.6 RF00005 URS00005AA258_83333 19833920 0030533 0006412 83333 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<...<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<.........>>>>.>>>>>>.... (((((....((((........)))).(((((.......)))))......((((.......))))...))))).... The crystal structure of the 70S ribosome bound to EF-Tu and tRNA; E-SITE TRNA PHE OR P-SITE TRNA PHE 4v5g AW 76 3.6 RF00005 URS00005AA258_83333 19833920 0030533 0006412 83333 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca .<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>..... ..(((((...(.(.....[..).)..((((.........)))).....((.((..]....)).)))))))...... The crystal structure of the 70S ribosome bound to EF-Tu and tRNA; E-SITE TRNA PHE OR P-SITE TRNA PHE 4v5g AY 77 3.6 RF00005 URS000080E18C_300852 19833920 0030533 0006412 300852 gcugauauagcucagnnggnagagcgcacccuuggugagggugagnucggcagnucgaaucugccuaucagcaccaT .<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<.........>>>>>>>>>>...... .(((..(..(((......[...)))..((((.......)))).......(..(..]....)..).)..)))..... The crystal structure of the 70S ribosome bound to EF-Tu and tRNA; A-SITE TRNA THR 4v5g CV 76 3.6 RF00005 URS00005AA258_83333 19833920 0030533 0006412 83333 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<...<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<.........>>>>.>>>>>>.... (((((....((((........)))).(((((.......)))))......((((.......))))...))))).... The crystal structure of the 70S ribosome bound to EF-Tu and tRNA; E-SITE TRNA PHE OR P-SITE TRNA PHE 4v5g CW 76 3.6 RF00005 URS00005AA258_83333 19833920 0030533 0006412 83333 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... ..(((((...(.(.....[..).)..((((.........)))).....((.((..]....)).)))))))...... The crystal structure of the 70S ribosome bound to EF-Tu and tRNA; E-SITE TRNA PHE OR P-SITE TRNA PHE 4v5g CY 77 3.6 RF00005 URS000080E18C_300852 19833920 0030533 0006412 300852 gcugauauagcucagnnggnagagcgcacccuuggugagggugagnucggcagnucgaaucugccuaucagcaccaT .<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<.........>>>>>>>>>>...... .(((..(..(((......[...)))..((((.......)))).......(..(..]....)..).)..)))..... The crystal structure of the 70S ribosome bound to EF-Tu and tRNA; A-SITE TRNA THR 4v5h AV 77 5.8 RF00005 URS000034D020_562 19933110 0030533 0006412 562 cggcacguagcgcagccugguagcgcaccgucauggggugucgggggucggaggnucaaauccucucgugccgacca <<<<<<<..<<<<.........>>>>.<<<.<<.....>>.>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((......[..)))).(((.(.......).))).....(((((..]....)))))))))))).... E.Coli 70s Ribosome Stalled During Translation Of Tnac Leader Peptide.; P-SITE TRNA 4v5k AV 77 3.2 RF00005 URS000041AF00_83333 20852642,16959973 0030533 0006412 83333 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((.........)))).(((((.......))))).....(((.(.......).)))))))))..... Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome; E-SITE TRNA PHE OR P-SITE TRNA PHE 4v5k AW 77 3.2 RF00005 URS000041AF00_83333 20852642,16959973 0030533 0006412 83333 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca ....<<<...<<<.........>>>..<<<<<.......>>>>>......<<<.........>>>..>>>....... ...........(...........)....((((.......)))).................................. Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome; E-SITE TRNA PHE OR P-SITE TRNA PHE 4v5k CV 77 3.2 RF00005 URS000041AF00_83333 20852642,16959973 0030533 0006412 83333 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..))))...(((.......))).......(.(((..]....))).)))))))..... Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome; E-SITE TRNA PHE OR P-SITE TRNA PHE 4v5k CW 77 3.2 RF00005 URS000041AF00_83333 20852642,16959973 0030533 0006412 83333 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca ....<<<..<<<<.........>>>>...<<<.......>>>........<.<<.......>>.>.>>>........ ......(...(.(.........).).........................................).......... Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome; E-SITE TRNA PHE OR P-SITE TRNA PHE 4v5l AV 76 3.1 RF00005 URS00005AA258_83333 21051640 0030533 0006412 83333 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))).... The structure of EF-Tu and aminoacyl-tRNA bound to the 70S ribosome with a GTP analog; E-SITE TRNA PHE OR P-SITE TRNA PHE 4v5l AW 76 3.1 RF00005 URS00005AA258_83333 21051640 0030533 0006412 83333 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((....((((........)))).((((.........)))).....(((((.......)))))..))))).... The structure of EF-Tu and aminoacyl-tRNA bound to the 70S ribosome with a GTP analog; E-SITE TRNA PHE OR P-SITE TRNA PHE 4v5l AY 77 3.1 RF00005 URS000080E2EE_83333 21051640 0030533 0006412 83333 aggggcgnaguucaannggnagaacaccggunuccanaaccgggunuugggagnucgagucucuccgccccugccaW <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>..... (((((((..((((........))))((((((.......))))).)...(((((.......)))))))))))).... The structure of EF-Tu and aminoacyl-tRNA bound to the 70S ribosome with a GTP analog; A-SITE TRNA G24A TRP-TRNA TRP 4v5m AV 77 7.8 RF00005 URS000041AF00_300852 21124459 0030533 0006412 300852 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... tRNA tranlocation on the 70S ribosome: the pre-translocational translocation intermediate TI(PRE); TRNA 4v5n AV 77 7.6 RF00005 URS000041AF00_300852 21124459 0030533 0006412 300852 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... tRNA translocation on the 70S ribosome: the post- translocational translocation intermediate TI(POST); TRNA 4v5p AV 76 3.1 RF00005 URS00005AA258_83333 21378964 0030533 0006412 83333 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).(((((.......))))).....(((((..]....)))))))))))).... The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosome; E-SITE TRNA PHE OR P-SITE TRNA PHE 4v5p AW 76 3.1 RF00005 URS00005AA258_83333 21378964 0030533 0006412 83333 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca ..<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>...... ....((...((((........)))).((((.........)))).....((.(.........).)).))........ The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosome; E-SITE TRNA PHE OR P-SITE TRNA PHE 4v5p AY 77 3.1 RF00005 URS000080DD64_83333 21378964 0030533 0006412 83333 aggggcgncguucaannggnagagcaccggunuccanaaccgggunuugggagnucgagucucuccgccccugccaW <<<<<<<..<<<<........>>>><<<<<<.......>>>>>.>...<<<<<.......>>>>>>>>>>>>..... ((.((((...(((........))).((((((.......))))).)...(((((.......))))))))).)).... The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosome; A-SITE TRNA A9C TRP-TRNA TRP 4v5p CV 76 3.1 RF00005 URS00005AA258_83333 21378964 0030533 0006412 83333 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).(((((.......))))).....(((((..]....)))))))))))).... The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosome; E-SITE TRNA PHE OR P-SITE TRNA PHE 4v5p CW 76 3.1 RF00005 URS00005AA258_83333 21378964 0030533 0006412 83333 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca ..<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>...... ....((...((((........)))).((((.........)))).....((.(.........).)).))........ The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosome; E-SITE TRNA PHE OR P-SITE TRNA PHE 4v5p CY 77 3.1 RF00005 URS000080DD64_83333 21378964 0030533 0006412 83333 aggggcgncguucaannggnagagcaccggunuccanaaccgggunuugggagnucgagucucuccgccccugccaW <<<<<<<..<<<<........>>>><<<<<<.......>>>>>.>...<<<<<.......>>>>>>>>>>>>..... ((.((((...(((........))).((((((.......))))).)...(((((.......))))))))).)).... The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosome; A-SITE TRNA A9C TRP-TRNA TRP 4v5q AV 76 3.1 RF00005 URS00005AA258_83333 21378964 0030533 0006412 83333 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).(((((.......))))).....(((((..]....)))))))))))).... The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosome; E-SITE TRNA PHE OR P-SITE TRNA PHE 4v5q AW 76 3.1 RF00005 URS00005AA258_83333 21378964 0030533 0006412 83333 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca ...<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>....... ....(....((((.....[..)))).((((.........)))).......(((..]....)))....)........ The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosome; E-SITE TRNA PHE OR P-SITE TRNA PHE 4v5q AY 77 3.1 RF00005 URS000080E2EE_83333 21378964 0030533 0006412 83333 aggggcgnaguucaannggnagaacaccggunuccanaaccgggunuugggagnucgagucucuccgccccugccaW <<<<<<<..<<<..........>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>..... ((.((((..((((........))))((((((.......))))).)...(((((.......))))))))).)).... The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosome; A-SITE TRNA G24A TRP-TRNA TRP 4v5q CV 76 3.1 RF00005 URS00005AA258_83333 21378964 0030533 0006412 83333 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))).... The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosome; E-SITE TRNA PHE OR P-SITE TRNA PHE 4v5q CW 76 3.1 RF00005 URS00005AA258_83333 21378964 0030533 0006412 83333 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca ...<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>....... (.(((((..(((......[...))).((((.........)))).....(.((...].....).))))).))).... The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosome; E-SITE TRNA PHE OR P-SITE TRNA PHE 4v5q CY 77 3.1 RF00005 URS000080E2EE_83333 21378964 0030533 0006412 83333 aggggcgnaguucaannggnagaacaccggunuccanaaccgggunuugggagnucgagucucuccgccccugccaW <<<<<<<..<<<..........>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>..... ((.((((..((((........))))((((((.......))))).)...(((((.......))))))))).)).... The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosome; A-SITE TRNA G24A TRP-TRNA TRP 4v5r AV 76 3.1 RF00005 URS00005AA258_83333 21378964 0030533 0006412 83333 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).(((((.......))))).....(((((..]....)))))))))))).... The crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome.; E-SITE TRNA PHE OR P-SITE TRNA PHE 4v5r AW 76 3.1 RF00005 URS00005AA258_83333 21378964 0030533 0006412 83333 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca ...<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>.>...... .(((((...((((........)))).((((.........)))).....((.((.......)).)).)))))..... The crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome.; E-SITE TRNA PHE OR P-SITE TRNA PHE 4v5r AY 77 3.1 RF00005 URS000080DE5D_83333 21378964 0030533 0006412 83333 aggggcgnaguucaannggnagagcaccggunuccanaaccgggunuugggagnucgagucucuccgccccugccaW <<<<<<<..<<<<........>>>><<<<<<.......>>>>>.>...<<<<<.......>>>>>>>>>>>>..... (((((((..((((........))))((((((.......))))).)...(((((.......)))))))))))).... The crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome.; A-SITE TRNA TRP-TRNA TRP 4v5r CV 76 3.1 RF00005 URS00005AA258_83333 21378964 0030533 0006412 83333 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).(((((.......))))).....(((((..]....)))))))))))).... The crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome.; E-SITE TRNA PHE OR P-SITE TRNA PHE 4v5r CW 76 3.1 RF00005 URS00005AA258_83333 21378964 0030533 0006412 83333 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca ...<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>.>...... .(((((...((((........)))).((((.........)))).....((.((.......)).)).)))))..... The crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome.; E-SITE TRNA PHE OR P-SITE TRNA PHE 4v5r CY 77 3.1 RF00005 URS000080DE5D_83333 21378964 0030533 0006412 83333 aggggcgnaguucaannggnagagcaccggunuccanaaccgggunuugggagnucgagucucuccgccccugccaW <<<<<<<..<<<<........>>>><<<<<<.......>>>>>.>...<<<<<.......>>>>>>>>>>>>..... (((((((..((((........))))((((((.......))))).)...(((((.......)))))))))))).... The crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome.; A-SITE TRNA TRP-TRNA TRP 4v5s AV 76 3.1 RF00005 URS00005AA258_83333 21378964 0030533 0006412 83333 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).(((((.......))))).....(((((..]....)))))))))))).... The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome.; E-SITE TRNA PHE OR P-SITE TRNA PHE 4v5s AW 76 3.1 RF00005 URS00005AA258_83333 21378964 0030533 0006412 83333 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca ...<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>....... ....(....((((........)))).((((.........)))).....((.((.......)).))..)........ The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome.; E-SITE TRNA PHE OR P-SITE TRNA PHE 4v5s AY 77 3.1 RF00005 URS000080E2EE_83333 21378964 0030533 0006412 83333 aggggcgnaguucaannggnagaacaccggunuccanaaccgggunuugggagnucgagucucuccgccccugccaW <<<<<<<..<<<..........>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>..... (((((((..((((........))))((((((.......))))).)...(((((.......)))))))))))).... The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome.; A-SITE TRNA G24A TRP-TRNA TRP 4v5s CV 76 3.1 RF00005 URS00005AA258_83333 21378964 0030533 0006412 83333 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))).... The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome.; E-SITE TRNA PHE OR P-SITE TRNA PHE 4v5s CW 76 3.1 RF00005 URS00005AA258_83333 21378964 0030533 0006412 83333 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<.<.<<..<<<..........>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>..>>>.... (.((.((..((............)).(.((.........)).).....((.............)))).).)).... The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome.; E-SITE TRNA PHE OR P-SITE TRNA PHE 4v5s CY 77 3.1 RF00005 URS000080E2EE_83333 21378964 0030533 0006412 83333 aggggcgnaguucaannggnagaacaccggunuccanaaccgggunuugggagnucgagucucuccgccccugccaW <<<<<<<..<<<..........>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>..... (((((((...(((........))).((((((.......))))).)...(((((.......)))))))))))).... The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome.; A-SITE TRNA G24A TRP-TRNA TRP 4v5z BE 54 8.7 RF03852 URS000080DE01_9615 18400176 0035195 0016442 9615 cgcgcgagcucgacgcgugcugcgccgcggcgcagcacgcgucgagcucgcgcg <<<<<.....<<<<<<<<<<..(<<.<>)>>>>>...>>>>>>>.....>>>>> (((((............................................))))) Structure of a mammalian 80S ribosome obtained by docking homology models of the RNA and proteins into an 8.7 A cryo-EM map; RNA Expansion segment ES7 part II 4v5z BF 120 8.7 RF04076 URS000080E1D1_9615 18400176 0035195 0016442 9615 cgcgcgagcucgacggcgcgugcugcgccgcgcgcgcgcgcgcucgcacgcggugcucgcgcgagcaccgcgugcgagcgcgcgcgcgcgcggcgcagcacgcgccgucgagcucgcgcg <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ((((((((((((((((((((((((((((((.((((((((((((((((((((((((((((..)))))))))))))))))))))))))))).)))))))))))))))))))))))))))))) Structure of a mammalian 80S ribosome obtained by docking homology models of the RNA and proteins into an 8.7 A cryo-EM map; RNA Expansion segment ES7 part III 4v5z BZ 72 8.7 RF00005 URS000080DE1B_9615 18400176 0030533 0006412 9615 gcccggaacucagucggugagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacc <<<<<<(.<<...).....>>..<<<<<<.....>>>>>>......<<<.........>>.>.>>>>>>... ((((((..((.........))..(((((.......))))).......(.(........).)..))))))... Structure of a mammalian 80S ribosome obtained by docking homology models of the RNA and proteins into an 8.7 A cryo-EM map; E site t-RNA 4v63 AZ 77 3.207 RF00005 URS000041AF00_562 18596689 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Structural basis for translation termination on the 70S ribosome.; P and E-site tRNA(fMet) 4v63 AY 77 3.207 RF00005 URS000041AF00_562 18596689 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Structural basis for translation termination on the 70S ribosome.; P and E-site tRNA(fMet) 4v63 CZ 77 3.207 RF00005 URS000041AF00_562 18596689 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Structural basis for translation termination on the 70S ribosome.; P and E-site tRNA(fMet) 4v63 CY 77 3.207 RF00005 URS000041AF00_562 18596689 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Structural basis for translation termination on the 70S ribosome.; P and E-site tRNA(fMet) 4v65 AA 75 9.0 RF00005 URS000011107D_562 0030533 0006412 562 gcggauuuagcucaguugggagagcgccagacugaagaucuggagguccuguguucgauccacagaauucgcacc <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>... .((((((..((((.....[..)))).((((.........)))).....(((((..]....))))))))))).... Structure of the E. coli ribosome in the Pre-accommodation state; A/T, P and E-site tRNAs 4v65 AP 75 9.0 RF00005 URS000011107D_562 0030533 0006412 562 gcggauuuagcucaguugggagagcgccagacugaagaucuggagguccuguguucgauccacagaauucgcacc <<<<<<<..<<<<........>>>>.<<<<.........>>>>.....<<<<<.......>>>>>>>>>>>>... (((((((....((........))...((((.........)))).....(((((.......))))))))))))... Structure of the E. coli ribosome in the Pre-accommodation state; A/T, P and E-site tRNAs 4v65 AE 76 9.0 RF00005 URS000011107D_562 0030533 0006412 562 gcggauuuagcucaguugggagagcgccagacugaagaucuggagguccuguguucgauccacagaauucgcacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... .((((((..((((.....[..)))).(((((.......))))).....(((((..]....)))))))))))..... Structure of the E. coli ribosome in the Pre-accommodation state; A/T, P and E-site tRNAs 4v66 AA 75 9.0 RF00005 URS000011107D_562 0030533 0006412 562 gcggauuuagcucaguugggagagcgccagacugaagaucuggagguccuguguucgauccacagaauucgcacc <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>... (((((((..((((.....[..)))).((((.........))))......((((..]....)))).)))))))... Structure of the E. coli ribosome and the tRNAs in Post-accommodation state; A/T, P and E-site tRNAs 4v66 AP 75 9.0 RF00005 URS000011107D_562 0030533 0006412 562 gcggauuuagcucaguugggagagcgccagacugaagaucuggagguccuguguucgauccacagaauucgcacc <<<<<<<..<<<<........>>>>.<<<<.........>>>>.....<<<<<.......>>>>>>>>>>>>... (((((((...(((........)))..((((.........)))).....(((((.......))))))))))))... Structure of the E. coli ribosome and the tRNAs in Post-accommodation state; A/T, P and E-site tRNAs 4v66 AE 76 9.0 RF00005 URS000011107D_562 0030533 0006412 562 gcggauuuagcucaguugggagagcgccagacugaagaucuggagguccuguguucgauccacagaauucgcacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... .((((((..((((.....[..)))).(((((.......))))).....(((((..]....)))))))))))..... Structure of the E. coli ribosome and the tRNAs in Post-accommodation state; A/T, P and E-site tRNAs 4v67 AZ 77 3.0 RF00005 URS000041AF00_562 19064930 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of a translation termination complex formed with release factor RF2.; P AND E-SITE TRNA(FMET) 4v67 AY 77 3.0 RF00005 URS000041AF00_562 19064930 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(.(((..]....))).)))))))..... Crystal structure of a translation termination complex formed with release factor RF2.; P AND E-SITE TRNA(FMET) 4v67 CZ 77 3.0 RF00005 URS000041AF00_562 19064930 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of a translation termination complex formed with release factor RF2.; P AND E-SITE TRNA(FMET) 4v67 CY 77 3.0 RF00005 URS000041AF00_562 19064930 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(.(((..]....))).)))))))..... Crystal structure of a translation termination complex formed with release factor RF2.; P AND E-SITE TRNA(FMET) 4v68 AV 77 6.4 RF00005 URS000041AF00_274 19229291 0030533 0006412 274 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.; P-SITE TRNA 4v68 AW 76 6.4 RF00005 URS00005AA258_274 19229291 0030533 0006412 274 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((........)))).((((.........)))).....(((((.......)))))))))))).... T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.; E-SITE TRNA 4v68 AY 72 6.4 RF00005 URS000080DE32_274 19229291 0030533 0006412 274 gcggauuuancucaggagagcnccaganunaagaunuggagnucnugugnucgnuccacagaauucgcacca <<<<<<<..<<<<....>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((..[.)))).((((.........)))).....(((((..]....)))))))))))).... T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.; AT-SITE TRNA 4v69 AY 76 6.7 RF00005 URS000011107D_562 19122150 0030533 0006412 562 gcggauuuagcucaguugggagagcgccagacugaagaucuggagguccuguguucgauccacagaauucgcacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).((((.........)))).....(((((..]....)))))))))))).... Ternary complex-bound E.coli 70S ribosome.; A/T-site tRNA Phe 4v69 AW 76 6.7 RF00005 URS00005AA258_562 19122150 0030533 0006412 562 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((........)))).((((.........)))).....(((((.......)))))))))))).... Ternary complex-bound E.coli 70S ribosome.; P-site tRNA fMet (Unmodified bases except for Thymine 54) 4v69 AV 77 6.7 RF00005 URS000041AF00_562 19122150 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Ternary complex-bound E.coli 70S ribosome.; E-site tRNA Phe 4v6a AW 77 3.1 RF00005 URS000041AF00_562 19696344 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Structure of EF-P bound to the 70S ribosome.; tRNA-Met 4v6a CW 77 3.1 RF00005 URS000041AF00_562 19696344 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(.((...].....)).)))))))..... Structure of EF-P bound to the 70S ribosome.; tRNA-Met 4v6f BD 76 3.1 RF00005 URS00005AA258_562 20400952 0030533 0006412 562 gcccggauagcucagucgguagagcaggggauugaanauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))).... Elongation complex of the 70S ribosome with three tRNAs and mRNA.; TRNA-PHE WITH UNMODIFIED NUCLEOTIDES EXCEPT FOR MIA37 4v6f BB 76 3.1 RF00005 URS00005AA258_562 20400952 0030533 0006412 562 gcccggauagcucagucgguagagcaggggauugaanauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))).... Elongation complex of the 70S ribosome with three tRNAs and mRNA.; TRNA-PHE WITH UNMODIFIED NUCLEOTIDES EXCEPT FOR MIA37 4v6f BC 76 3.1 RF00005 URS00005AA258_562 20400952 0030533 0006412 562 gcccggauagcucagucgguagagcaggggauugaanauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).(((((.......))))).....(((((..]....)))))))))))).... Elongation complex of the 70S ribosome with three tRNAs and mRNA.; TRNA-PHE WITH UNMODIFIED NUCLEOTIDES EXCEPT FOR MIA37 4v6f CD 76 3.1 RF00005 URS00005AA258_562 20400952 0030533 0006412 562 gcccggauagcucagucgguagagcaggggauugaanauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))).... Elongation complex of the 70S ribosome with three tRNAs and mRNA.; TRNA-PHE WITH UNMODIFIED NUCLEOTIDES EXCEPT FOR MIA37 4v6f CB 76 3.1 RF00005 URS00005AA258_562 20400952 0030533 0006412 562 gcccggauagcucagucgguagagcaggggauugaanauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))).... Elongation complex of the 70S ribosome with three tRNAs and mRNA.; TRNA-PHE WITH UNMODIFIED NUCLEOTIDES EXCEPT FOR MIA37 4v6f CC 76 3.1 RF00005 URS00005AA258_562 20400952 0030533 0006412 562 gcccggauagcucagucgguagagcaggggauugaanauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).(((((.......))))).....(((((..]....)))))))))))).... Elongation complex of the 70S ribosome with three tRNAs and mRNA.; TRNA-PHE WITH UNMODIFIED NUCLEOTIDES EXCEPT FOR MIA37 4v6g AC 77 3.5 RF00005 URS000057545F_562 20400952 0030533 0006412 562 cgcgggguggagcagcccgguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))..... Initiation complex of 70S ribosome with two tRNAs and mRNA.; TRNA FMET (UNMODIFIED BASES) 4v6g AD 77 3.5 RF00005 URS000057545F_562 20400952 0030533 0006412 562 cgcgggguggagcagcccgguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))..... Initiation complex of 70S ribosome with two tRNAs and mRNA.; TRNA FMET (UNMODIFIED BASES) 4v6g CC 77 3.5 RF00005 URS000057545F_562 20400952 0030533 0006412 562 cgcgggguggagcagcccgguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Initiation complex of 70S ribosome with two tRNAs and mRNA.; TRNA FMET (UNMODIFIED BASES) 4v6g CD 77 3.5 RF00005 URS000057545F_562 20400952 0030533 0006412 562 cgcgggguggagcagcccgguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Initiation complex of 70S ribosome with two tRNAs and mRNA.; TRNA FMET (UNMODIFIED BASES) 4v6g CB 65 3.5 RF00005 URS000057545F_562 20400952 0030533 0006412 562 ggguggagcagcccgguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccc <<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>> (((..((((......[..)))).(((((.......))))).....(((((..]....)))))))) Initiation complex of 70S ribosome with two tRNAs and mRNA.; TRNA FMET (UNMODIFIED BASES) 4v6i CB 75 8.8 RF00005 URS00005AD0B9_4932 20980660,20974910 0030533 0006412 4932 uccgugauaguuuaauggucagaaugggcgcuugucgcgugccagaucgggguucaauuccccgucgcggagcca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>....<<<<<.......>>>>>>>>>>>>.... (((((((..((((........)))).(((.(.......).)))....(((((.......)))))))))))).... Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome; P-SITE TRNA ASP 4v6k BB 76 8.25 RF00005 URS00005AA258_536056 21378755 0030533 0006412 536056 gcccgganagcucagncggnagagcaggggauugaanauccccgunnccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).((((.........)))).....(((((..]....)))))))))))).... Structural insights into cognate vs. near-cognate discrimination during decoding.; A/T-site tRNA Phe 4v6k BE 76 8.25 RF00005 URS00005AA258_536056 21378755 0030533 0006412 536056 gcccgganagcucagncggnagagcaggggauugaanauccccgunnccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<...(....>>>>.<<<<<<.....>>>>>>.....<<<<<...)...>>>>>>>>>>>>.... (((((((..((((........)))).((((.........)))).....(((((.......)))))))))))).... Structural insights into cognate vs. near-cognate discrimination during decoding.; A/T-site tRNA Phe 4v6l AB 76 13.2 RF00005 URS00005AA258_536056 21378755 0030533 0006412 536056 gcccgganagcucagncggnagagcaggggauugaanauccccgunnccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).((((.........)))).....(((((..]....)))))))))))).... Structural insights into cognate vs. near-cognate discrimination during decoding.; A/T-site tRNA Phe 4v6l AE 76 13.2 RF00005 URS00005AA258_536056 21378755 0030533 0006412 536056 gcccgganagcucagncggnagagcaggggauugaanauccccgunnccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>><<<<<.........>>>>.>...<<<<<.......>>>>>>>>>>>>.... (((((((..((((........)))).((((.........)))).....(((((.......)))))))))))).... Structural insights into cognate vs. near-cognate discrimination during decoding.; A/T-site tRNA Phe 4v6m AV 77 7.1 RF00005 URS000034D020_536056 21499241 0030533 0006412 536056 cggcacguagcgcagccugguagcgcaccgucauggggugucgggggucggagguucaaauccucucgugccgacca <<<<<<<..<<<<.........>>>>.<<<.<<.....>>.>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.........)))).(((.(.......).))).....(((((.......)))))))))))).... Structure of the ribosome-SecYE complex in the membrane environment; FtsQ nascent chain 4v6n BB 76 12.1 RF00005 URS00003A6DC6_562 22467828 0030533 0006412 562 aggggcgnaguucaannggnagagcaccggunuccanaaccgggunuugggagnucgagucucuccgccccugcca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<.........>>>>>>>>>>>.... (((((((..((((........)))).(((((.......))))).....(.(((.......))).)))))))).... Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes); A site tRNA 4v6n BD 77 12.1 RF00005 URS00001BBAFC_562 22467828 0030533 0006412 562 cgcggggnggagcagccuggnagcucgucgggnucauaacccgaagaucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes); P site tRNA 4v6o AB 76 14.7 RF00005 URS00003A6DC6_562 22467828 0030533 0006412 562 aggggcgnaguucaannggnagagcaccggunuccanaaccgggunuugggagnucgagucucuccgccccugcca <<<<<<<..<<<<........>>>><<<<<<.......>>>>>.>...<<<<.........>>>>>>>>>>>.... (((((((..((((........)))).(((((.......))))).....(.(((.......))).)))))))).... Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes); A site tRNA 4v6o AD 77 14.7 RF00005 URS00001BBAFC_562 22467828 0030533 0006412 562 cgcggggnggagcagccuggnagcucgucgggnucauaacccgaagaucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes); P site tRNA 4v6p AB 76 13.5 RF00005 URS00003A6DC6_562 22467828 0030533 0006412 562 aggggcgnaguucaannggnagagcaccggunuccanaaccgggunuugggagnucgagucucuccgccccugcca <<<<<<<..<<<<........>>>><<<<<<.......>>>>>.>...<<<<.........>>>>>>>>>>>.... (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))).... Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes); A site tRNA 4v6p AD 77 13.5 RF00005 URS00001BBAFC_562 22467828 0030533 0006412 562 cgcggggnggagcagccuggnagcucgucgggnucauaacccgaagaucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))..... Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes); P site tRNA 4v6q AB 76 11.5 RF00005 URS00003A6DC6_562 22467828 0030533 0006412 562 aggggcgnaguucaannggnagagcaccggunuccanaaccgggunuugggagnucgagucucuccgccccugcca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((........)))).(((((.......))))).....(.(((.......))).)))))))).... Structural characterization of mRNA-tRNA translocation intermediates (class 5 of the six classes); A site tRNA 4v6q AD 77 11.5 RF00005 URS00001BBAFC_562 22467828 0030533 0006412 562 cgcggggnggagcagccuggnagcucgucgggnucauaacccgaagaucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))..... Structural characterization of mRNA-tRNA translocation intermediates (class 5 of the six classes); P site tRNA 4v6r AB 76 11.5 RF00005 URS00003A6DC6_562 22467828 0030533 0006412 562 aggggcgnaguucaannggnagagcaccggunuccanaaccgggunuugggagnucgagucucuccgccccugcca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<.........>>>>>>>>>>>.... (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))).... Structural characterization of mRNA-tRNA translocation intermediates (class 6 of the six classes); A site tRNA 4v6r AD 77 11.5 RF00005 URS00001BBAFC_562 22467828 0030533 0006412 562 cgcggggnggagcagccuggnagcucgucgggnucauaacccgaagaucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Structural characterization of mRNA-tRNA translocation intermediates (class 6 of the six classes); P site tRNA 4v6s BC 77 13.1 RF00005 URS00001BBAFC_562 22467828 0030533 0006412 562 cgcggggnggagcagccuggnagcucgucgggnucauaacccgaagaucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Structural characterization of mRNA-tRNA translocation intermediates (class 3 of the six classes); P site tRNA 4v6t AV 334 8.3 RF00023 URS000037602E_562 22622583 0006401 562 ggggcugauucuggauucgacgggauuugcgaaacccaaggugcaugccgaggggcgguuggccucguaaaaagccgcgcuuuagcagcuuaauaaccugcuuagagcccucucucccuagccuccgcucuuaggacggggaucaagagaggucaaacccaaaagagaucgcguggaagcccugccugggguugaagcguuaaaacuuaaucaggcuaguuuguuaguggcguguccguccgcagcuggcaagcgaauguaaagacugacuaagcauguaguaccgaggauguaggaauuucggacgcgggnucaacucccgccagcuccacca <<<<<<..............<<<<<<<<.<.....<<..<<<.<<<<<<<<<<.(((((...>>>>>......)))))<<<<<<.<<<.........>>>..>>>>>>.<<<<<.<<<<..<<<...(((((>>>..>>>>.....>>>>>...........)))))...<<<<...<<<<..((((..>>>>...>>>>............))))...<<<<<<<<..<<<..[[.(((>>>..>>>>>>>>..........))).]]....>>>>>....>>>..>>.....>>>>>>>>>...<<<<<.......>>>>>.>>>>>>.... (((((((.............((..((((.....(.((..(((.((((((((((.[[[[....))))).......]]]](((.((.(((.........)))..)).)))((((((.(((...(((...[[[[.)))...))).....))))))...........]]]]...(((......((...[[[..))......)))............]]]...(((((..((..((...[[.[.[.))..))..))))).........].].]]....)))))....)))..)).)....))))..))...(((((.......)))))))))))).... Structure of the bacterial ribosome complexed by tmRNA-SmpB and EF-G during translocation and MLD-loading; full length transfer messenger RNA (tmRNA) 4v6t AX 77 8.3 RF00005 URS000041AF00_562 22622583 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .(((((...((((......[..)))).(((((.......))))).....(.((...].....)).).)))))..... Structure of the bacterial ribosome complexed by tmRNA-SmpB and EF-G during translocation and MLD-loading; formyl-methionine specific initiator transfer RNA 4v6u A1 77 6.6 RF00005 URS00001D39A7_186497 23222135 0030533 0006412 186497 ggggcgguagcucagccugggagagcaccggacugaagauccgggugucggggguucaaaucccccccgccccacca <<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.........))))((((((.......))))).)...(((((.......)))))))))))).... Promiscuous behavior of proteins in archaeal ribosomes revealed by cryo-EM: implications for evolution of eukaryotic ribosomes; E-tRNA 4v6u A0 76 6.6 RF00005 URS00005EC276_186497 23222135 0030533 0006412 186497 gccgccguagcuuagcugguggagcgccggacuguuaauccggcgguccccgguucgaauccgggcggcggcgcca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).(((((.......))))).....((.((..]....)).))))))))).... Promiscuous behavior of proteins in archaeal ribosomes revealed by cryo-EM: implications for evolution of eukaryotic ribosomes; P-tRNA 4v6v A3 77 9.8 RF00005 URS00001BBAFC_562 23403578 0030533 0006412 562 cgcggggnggagcagccuggnagcucgucgggnucauaacccgaagaucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Tetracycline resistance protein Tet(O) bound to the ribosome; P-tRNA 4v6w BC 75 6.0 RF00005 URS000080DDE9_7227 23636399 0030533 0006412 7227 agcagaguggcgcaguggaagcgugcugggcccauaacucagagguccgaggaucgaaaccuugcucugcuacca <<<<<<<..<<<<.......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((....[..)))).(((.(.......).))).....(.(((..]....))).)))))))).... Structure of the D. melanogaster 80S ribosome; E-tRNA 4v6x BC 75 5.0 RF00005 URS0000326EAC_9606 23636399 0030533 0006412 9606 agcagaguggcgcagcggaagcgugcugggcccauaacccagaggucgauggaucgaaaccauccucugcuacca <<<<<<<..<<<<.......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((....[..)))).(((((.......))))).....(((((..]....)))))))))))).... Structure of the human 80S ribosome; E-tRNA 4v6y A1 76 12.0 RF00005 URS00003179F7_83333 24186064 0030533 0006412 83333 ggguganuagcucagcugggagagcaccucccunacnaggaggggnucggcggnucgaucccgucaucacccacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((........)))).(((((.......))))).....(((.(.......).)))))))))).... E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic pre-translocation state (pre1a); fMet-Val-tRNA-Val 4v6y A3 77 12.0 RF00005 URS000041AF00_83333 24186064 0030533 0006412 83333 cgcggggnggagcagccuggnagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic pre-translocation state (pre1a); tRNA-fMet 4v6z A1 76 12.0 RF00005 URS00003179F7_83333 24186064 0030533 0006412 83333 ggguganuagcucagcugggagagcaccucccunacnaggaggggnucggcggnucgaucccgucaucacccacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))).... E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic pre-translocation state (pre1b); fMet-Val-tRNA-Val 4v6z A3 77 12.0 RF00005 URS000041AF00_83333 24186064 0030533 0006412 83333 cgcggggnggagcagccuggnagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic pre-translocation state (pre1b); tRNA-fMet 4v70 A1 76 17.0 RF00005 URS00003179F7_83333 24186064 0030533 0006412 83333 ggguganuagcucagcugggagagcaccucccunacnaggaggggnucggcggnucgaucccgucaucacccacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).(((((.......))))).....(((((..]....)))))))))))).... E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate pre-translocation state (pre3); fMet-Val-tRNA-Val 4v70 A3 77 17.0 RF00005 URS000041AF00_83333 24186064 0030533 0006412 83333 cgcggggnggagcagccuggnagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate pre-translocation state (pre3); tRNA-fMet 4v71 A1 76 20.0 RF00005 URS00003179F7_83333 24186064 0030533 0006412 83333 ggguganuagcucagcugggagagcaccucccunacnaggaggggnucggcggnucgaucccgucaucacccacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))).... E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate pre-translocation state (pre2); fMet-Val-tRNA-Val 4v71 A3 77 20.0 RF00005 URS000041AF00_83333 24186064 0030533 0006412 83333 cgcggggnggagcagccuggnagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate pre-translocation state (pre2); tRNA-fMet 4v72 A1 76 13.0 RF00005 URS00003179F7_83333 24186064 0030533 0006412 83333 ggguganuagcucagcugggagagcaccucccunacnaggaggggnucggcggnucgaucccgucaucacccacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))).... E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre4); fMet-Val-tRNA-Val 4v72 A3 77 13.0 RF00005 URS000041AF00_83333 24186064 0030533 0006412 83333 cgcggggnggagcagccuggnagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre4); tRNA-fMet 4v73 A1 76 15.0 RF00005 URS00003179F7_83333 24186064 0030533 0006412 83333 ggguganuagcucagcugggagagcaccucccunacnaggaggggnucggcggnucgaucccgucaucacccacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).(((((.......))))).....(((((..]....)))))))))))).... E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre5a); fMet-Val-tRNA-Val 4v73 A3 77 15.0 RF00005 URS000041AF00_83333 24186064 0030533 0006412 83333 cgcggggnggagcagccuggnagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre5a); tRNA-fMet 4v74 A1 76 17.0 RF00005 URS00003179F7_83333 24186064 0030533 0006412 83333 ggguganuagcucagcugggagagcaccucccunacnaggaggggnucggcggnucgaucccgucaucacccacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).(((((.......))))).....(((((..]....)))))))))))).... 70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre5b); fMet-Val-tRNA-Val 4v74 A3 77 17.0 RF00005 URS000041AF00_83333 24186064 0030533 0006412 83333 cgcggggnggagcagccuggnagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))..... 70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre5b); tRNA-fMet 4v75 A1 76 12.0 RF00005 URS00003179F7_83333 24186064 0030533 0006412 83333 ggguganuagcucagcugggagagcaccucccunacnaggaggggnucggcggnucgaucccgucaucacccacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).(((((.......))))).....(((((..]....)))))))))))).... E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic post-translocation state (post1); fMet-Val-tRNA-Val 4v75 A3 77 12.0 RF00005 URS000041AF00_83333 24186064 0030533 0006412 83333 cgcggggnggagcagccuggnagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca ...<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>....... ...((((..(.((......[..)).).(((((.......))))).....(((((..]....)))))))))....... E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic post-translocation state (post1); tRNA-fMet 4v76 A1 76 17.0 RF00005 URS00003179F7_83333 24186064 0030533 0006412 83333 ggguganuagcucagcugggagagcaccucccunacnaggaggggnucggcggnucgaucccgucaucacccacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).(((((.......))))).....(((((..]....)))))))))))).... E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post2a); fMet-Val-tRNA-Val 4v76 A3 77 17.0 RF00005 URS000041AF00_83333 24186064 0030533 0006412 83333 cgcggggnggagcagccuggnagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ...((((..((((......[..)))).(.(((.......))).).....(((((..]....)))))))))....... E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post2a); tRNA-fMet 4v77 A1 76 17.0 RF00005 URS00003179F7_83333 24186064 0030533 0006412 83333 ggguganuagcucagcugggagagcaccucccunacnaggaggggnucggcggnucgaucccgucaucacccacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))).... E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post2b); fMet-Val-tRNA-Val 4v77 A3 77 17.0 RF00005 URS000041AF00_83333 24186064 0030533 0006412 83333 cgcggggnggagcagccuggnagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca ..<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>...... ...((((..(.((......[..)).).(((((.......))))).....(((((..]....)))))))))....... E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post2b); tRNA-fMet 4v78 A1 76 20.0 RF00005 URS00003179F7_83333 24186064 0030533 0006412 83333 ggguganuagcucagcugggagagcaccucccunacnaggaggggnucggcggnucgaucccgucaucacccacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).(((((.......))))).....(((((..]....)))))))))))).... E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post3a); fMet-Val-tRNA-Val 4v78 A3 77 20.0 RF00005 URS000041AF00_83333 24186064 0030533 0006412 83333 cgcggggnggagcagccuggnagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ...((((..(.((......[..)).).(((((.......))))).....(((((..]....)))))))))....... E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post3a); tRNA-fMet 4v79 A1 76 15.0 RF00005 URS00003179F7_83333 24186064 0030533 0006412 83333 ggguganuagcucagcugggagagcaccucccunacnaggaggggnucggcggnucgaucccgucaucacccacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).(((((.......))))).....(((((..]....)))))))))))).... E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post3b); fMet-Val-tRNA-Val 4v79 A3 77 15.0 RF00005 URS000041AF00_83333 24186064 0030533 0006412 83333 cgcggggnggagcagccuggnagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca ...<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>....... ...((((..(.((......[..)).).(((((.......))))).....(((((..]....)))))))))....... E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post3b); tRNA-fMet 4v7a A1 76 9.0 RF00005 URS00003179F7_83333 24186064 0030533 0006412 83333 ggguganuagcucagcugggagagcaccucccunacnaggaggggnucggcggnucgaucccgucaucacccacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).(((((.......))))).....(((((..]....)))))))))))).... E. coli 70S-fMetVal-tRNAVal post-translocation complex (post4); fMet-Val-tRNA-Val 4v7b AV 77 6.8 RF00005 URS000080E012_83333 24324168 0030533 0006412 83333 cgcgggguggagcagccugguagcucgucgggcuuacaacccgaaggucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Visualization of two tRNAs trapped in transit during EF-G-mediated translocation; modified formyl-methionine specific initiator transfer RNA 4v7b AW 77 6.8 RF00005 URS0000093D11_83333 24324168 0030533 0006412 83333 ggcuacguagcucaguugguuagagcacaucacucauaaugauggggucacagguucgaaucccgucguagccacca <<<<<<<..<<<...........>>>.<<<<<.......>>>>>.....<<.<<.......>>.>>>>>>>>>.... (((((((..(((...........))).(((((.......)))))........((.......))...))))))).... Visualization of two tRNAs trapped in transit during EF-G-mediated translocation; formyl-methionine specific initiator transfer RNA 4v7c AV 76 7.6 RF00005 URS00005AA258_83333 24324137 0030533 0006412 83333 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca .<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>..... ((.((((..((.(........).))..((((.......))))......((.((.......)).)))))).)).... Structure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA structure); tRNA 4v7c AW 76 7.6 RF00005 URS00005AA258_83333 24324137 0030533 0006412 83333 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).(((((.......))))).....((.((..]....)).))))))))).... Structure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA structure); tRNA 4v7d BV 76 7.6 RF00005 URS00005AA258_83333 24324137 0030533 0006412 83333 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca .<<<<<<..<<<<........>>>>.<<.<<<.....>>.>>>.....<<<<<.......>>>>>>>>>>>..... ...((((..((.(........).)).((..(.......)..)).....((.((.......)).))))))....... Structure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA*EF-G structure); tRNA 4v7d BW 76 7.6 RF00005 URS00005AA258_83333 24324137 0030533 0006412 83333 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((........)))).(((((.......))))).....((.((.......)).))))))))).... Structure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA*EF-G structure); tRNA 4v7e Ae 75 5.5 RF00005 URS00005AD0B9_4565 24499919,20980660,20974910 0030533 0006412 4565 uccgugauaguuuaauggucagaaugggcgcuugucgcgugccagaucgggguucaauuccccgucgcggagcca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>....<<<<<.......>>>>>>>>>>>>.... (((((((..((((........)))).(((.(.......).)))....(((((.......)))))))))))).... Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome; P-site tRNA 4v7h A7 76 8.9 RF00005 URS000011107D_5541 20004163 0030533 0006412 5541 gcggauuuancucagnngggagagcnccaganunaanaunuggagnucnugugnucgnuccacagaauucgcacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).((((.........)))).....(((((..]....)))))))))))).... Structure of the 80S rRNA and proteins and P/E tRNA for eukaryotic ribosome based on cryo-EM map of Thermomyces lanuginosus ribosome at 8.9A resolution; P/E tRNA 4v7j Av 77 3.3 RF00005 URS000041AF00_274 20005802 0030533 0006412 274 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>......<<<<.......>>>>.>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Structure of RelE nuclease bound to the 70S ribosome (precleavage state); RNA (77-MER) 4v7j Aw 77 3.3 RF00005 URS000041AF00_274 20005802 0030533 0006412 274 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<...<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>.>>>>>..... .(((..(..(((...........))).(((...........))).....(...(.......)...))..)))..... Structure of RelE nuclease bound to the 70S ribosome (precleavage state); RNA (77-MER) 4v7j Bv 77 3.3 RF00005 URS000041AF00_274 20005802 0030533 0006412 274 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Structure of RelE nuclease bound to the 70S ribosome (precleavage state); RNA (77-MER) 4v7j Bw 77 3.3 RF00005 URS000041AF00_274 20005802 0030533 0006412 274 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .(((.(...(((.......[...)))..(((.........)))......(...(..]....)...).).)))..... Structure of RelE nuclease bound to the 70S ribosome (precleavage state); RNA (77-MER) 4v7k Av 77 3.6 RF00005 URS000041AF00_274 20005802 0030533 0006412 274 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Structure of RelE nuclease bound to the 70S ribosome (postcleavage state); RNA (77-MER) 4v7k Aw 77 3.6 RF00005 URS000041AF00_274 20005802 0030533 0006412 274 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((.(..(((...........))).((((.........)))).....(.(.(.......).).)).))))..... Structure of RelE nuclease bound to the 70S ribosome (postcleavage state); RNA (77-MER) 4v7k Bv 77 3.6 RF00005 URS000041AF00_274 20005802 0030533 0006412 274 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Structure of RelE nuclease bound to the 70S ribosome (postcleavage state); RNA (77-MER) 4v7k Bw 77 3.6 RF00005 URS000041AF00_274 20005802 0030533 0006412 274 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .(((.((..(.(.......[...).).(((((.......))))).....(((((..]....))))))).)))..... Structure of RelE nuclease bound to the 70S ribosome (postcleavage state); RNA (77-MER) 4v7l AW 75 3.0 RF00005 URS00004FF598_536056 20154709 0030533 0006412 536056 ugggguaucgccaagcgguaaggcaccggauucugauuccggcauuccgagguucgaauccucguaccccagcca <<<<<<<..<<<.........>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..(((.........))).(((((.......))))).....(((((.......)))))))))))).... The structures of viomycin bound to the 70S ribosome.; tRNA-Gln 4v7l AX 77 3.0 RF00005 URS000041AF00_536056 20154709 0030533 0006412 536056 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>......<<<<.......>>>>.>>>>>>..... .((((((..((((......[..)))).(((((.......)))))......((((..]....)))).))))))..... The structures of viomycin bound to the 70S ribosome.; tRNA-Met 4v7l AY 75 3.0 RF00005 URS000080E16B_536056 20154709 0030533 0006412 536056 ugggguaucgccaagcgguaaggcaccggauugugauuccggcuuuccgagguucgaauccucguaccccagcca <<<<<<<..<<<.........>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... ((((((...(.(..........)).((((.........))))......((...........))..)))))).... The structures of viomycin bound to the 70S ribosome.; tRNA-Gln 4v7l CW 75 3.0 RF00005 URS00004FF598_536056 20154709 0030533 0006412 536056 ugggguaucgccaagcgguaaggcaccggauucugauuccggcauuccgagguucgaauccucguaccccagcca <<<<<<<..<<<.........>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..(((.....[...))).(((((.......))))).....(((((..]....)))))))))))).... The structures of viomycin bound to the 70S ribosome.; tRNA-Gln 4v7l CX 77 3.0 RF00005 URS000041AF00_536056 20154709 0030533 0006412 536056 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<...<<<<.........>>>>.<<<<<.......>>>>>......<<<<.......>>>>..>>>>>..... .((((((..((((......[..)))).(((((.......))))).....((((...].....))))))))))..... The structures of viomycin bound to the 70S ribosome.; tRNA-Met 4v7l CY 75 3.0 RF00005 URS000080E16B_536056 20154709 0030533 0006412 536056 ugggguaucgccaagcgguaaggcaccggauugugauuccggcuuuccgagguucgaauccucguaccccagcca <<<<<<<..<<<.........>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... ((((.((..((...........)).(.((.........)).).....((((.........)))))).)))).... The structures of viomycin bound to the 70S ribosome.; tRNA-Gln 4v7m AW 74 3.45 RF00005 URS00004FF598_536056 20154709 0030533 0006412 536056 gggguaucgccaagcgguaaggcaccggauucugauuccggcauuccgagguucgaauccucguaccccagcca <<<<<<..<<<.........>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((......[....)).(((((.......))))).....(((((..]....)))))))))))..... The structures of Capreomycin bound to the 70S ribosome.; tRNA-Gln 4v7m AX 77 3.45 RF00005 URS00001BBAFC_536056 20154709 0030533 0006412 536056 cgcgggguggagcagccugguagcucgucgggcucauaacccgaagaucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... The structures of Capreomycin bound to the 70S ribosome.; tRNA-Met 4v7m AY 75 3.45 RF00005 URS000080E16B_561231 20154709 0030533 0006412 561231 ugggguaucgccaagcgguaaggcaccggauugugauuccggcuuuccgagguucgaauccucguaccccagcca <<<<<<...<<<.........>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>.>>>>>>.... ((((((.....(.........)...((((.........)))).....((((.........)))).)))))).... The structures of Capreomycin bound to the 70S ribosome.; tRNA-Gln 4v7m CW 74 3.45 RF00005 URS00004FF598_536056 20154709 0030533 0006412 536056 gggguaucgccaagcgguaaggcaccggauucugauuccggcauuccgagguucgaauccucguaccccagcca <<<<<<..<<<.........>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((......[....)).(((((.......))))).....(((((..]....)))))))))))..... The structures of Capreomycin bound to the 70S ribosome.; tRNA-Gln 4v7m CX 77 3.45 RF00005 URS000041AF00_536056 20154709 0030533 0006412 536056 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... The structures of Capreomycin bound to the 70S ribosome.; RNA (77-MER) 4v7m CY 75 3.45 RF00005 URS000080E16B_561231 20154709 0030533 0006412 561231 ugggguaucgccaagcgguaaggcaccggauugugauuccggcuuuccgagguucgaauccucguaccccagcca <<<<<<<..<<<.........>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((...........)).(.((.........)).)......((((.......)))).))))))).... The structures of Capreomycin bound to the 70S ribosome.; tRNA-Gln 4v7p AW 77 3.62 RF00005 URS000041AF00_469008 20588254 0030533 0006412 469008 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Recognition of the amber stop codon by release factor RF1.; P-site tRNA-fMet 4v7p DW 77 3.62 RF00005 URS000041AF00_469008 20588254 0030533 0006412 469008 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Recognition of the amber stop codon by release factor RF1.; P-site tRNA-fMet 4v87 BB 87 3.1 RF00005 URS00004630EA_32630 22437501 0030533 0006412 32630 gccgaggugguggaauugguagacacgcuaccuugaggugguagugcccaauagggcuuacggguucaagucccguccucgguacca <<<<<<<..<<<...........>>><<<<<<.......>>>>>><<<<....>>>>..<<<<<.......>>>>>>>>>>>>.... ..(((((..((.............)).(((((.......))))).(.((.....)))..(((((.......))))))))))...... Crystal structure analysis of ribosomal decoding.; TRNA-LEU 4v87 BC 77 3.1 RF00005 URS000057545F_1110693 22437501 0030533 0006412 1110693 cgcgggguggagcagcccgguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure analysis of ribosomal decoding.; TRNA-FMET 4v87 BD 77 3.1 RF00005 URS000057545F_1110693 22437501 0030533 0006412 1110693 cgcgggguggagcagcccgguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<.<..<<<<.........>>>>.<<<<<.......>>>>>......<<<<.......>>>>..>>>>>..... .((..(...(.(...........).).((((.........))).)....(((((.......))))).)..))..... Crystal structure analysis of ribosomal decoding.; TRNA-FMET 4v87 CB 87 3.1 RF00005 URS00004630EA_32630 22437501 0030533 0006412 32630 gccgaggugguggaauugguagacacgcuaccuugaggugguagugcccaauagggcuuacggguucaagucccguccucgguacca <<<<<<<..<<<...........>>><<<<<<.......>>>>>><<<<....>>>>..<<<<<.......>>>>>>>>>>>>.... .(....(..(((...........))).(.(((.......))).).((........))..(((((.......))))))....)..... Crystal structure analysis of ribosomal decoding.; TRNA-LEU 4v87 CC 77 3.1 RF00005 URS000057545F_1110693 22437501 0030533 0006412 1110693 cgcgggguggagcagcccgguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure analysis of ribosomal decoding.; TRNA-FMET 4v87 CD 77 3.1 RF00005 URS000057545F_1110693 22437501 0030533 0006412 1110693 cgcgggguggagcagcccgguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<.<<<..<<<<.........>>>>.<<<<<.......>>>>>......<<<.........>>>.>.>>>>..... .((..(...(.(...........).).((((.........))))......((((.......))))..)..))..... Crystal structure analysis of ribosomal decoding.; TRNA-FMET 4v8b AB 87 3.0 RF00005 URS00004630EA_1110693 22437501 0030533 0006412 1110693 gccgaggugguggaauugguagacacgcuaccuugaggugguagugcccaauagggcuuacggguucaagucccguccucgguacca <<<<<<<..<<<...........>>><<<<<<.......>>>>>><<<......>>>..<<<<<.......>>>>>>>>>>>>.... .((((((..((.............)).(((((.......))))).((.(.....)))..(((((.......)))))))))))..... Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).; TRNA-LEU 4v8b AC 77 3.0 RF00005 URS000057545F_1110693 22437501 0030533 0006412 1110693 cgcgggguggagcagcccgguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).; TRNA-FMET 4v8b AD 77 3.0 RF00005 URS000057545F_1110693 22437501 0030533 0006412 1110693 cgcgggguggagcagcccgguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<.<<..<<<<.........>>>>.<<<<<.......>>>>>......<<<<.......>>>>..>>>>>..... .((..(...(.(............)).((((.........))).)....(((((.......))))).)..))..... Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).; TRNA-FMET 4v8b CB 87 3.0 RF00005 URS00004630EA_1110693 22437501 0030533 0006412 1110693 gccgaggugguggaauugguagacacgcuaccuugaggugguagugcccaauagggcuuacggguucaagucccguccucgguacca <<<<<<<..<<<...........>>><<<<<<.......>>>>>><<<......>>>..<<<<<.......>>>>>>>>>>>>.... .(.((((..(((...........))).(((((.......))))).((.(....).))..(((((.......))))))))).)..... Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).; TRNA-LEU 4v8b CC 77 3.0 RF00005 URS000057545F_1110693 22437501 0030533 0006412 1110693 cgcgggguggagcagcccgguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(.(((..]....))).)))))))..... Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).; TRNA-FMET 4v8b CD 77 3.0 RF00005 URS000057545F_1110693 22437501 0030533 0006412 1110693 cgcgggguggagcagcccgguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<.<<<..<<<<.........>>>>.<<<<<.......>>>>>......<<<<.......>>>>..>>>>>..... .((......(.((.........)).).((((.........))))......((((.......)))).....))..... Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).; TRNA-FMET 4v8c CB 87 3.3 RF00005 URS00004630EA_1110693 22437501 0030533 0006412 1110693 gccgaggugguggaauugguagacacgcuaccuugaggugguagugcccaauagggcuuacggguucaagucccguccucgguacca <<<<<<<..<<<...........>>><<<<<<.......>>>>>><<<<....>>>>..<<<<<.......>>>>>>>>>>>>.... (((((((..(((...........))).(((((.......))))).((((....))))..(((((.......)))))))))))).... Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).; TRNA-LEU 4v8c CC 77 3.3 RF00005 URS000057545F_1110693 22437501 0030533 0006412 1110693 cgcgggguggagcagcccgguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).; TRNA-FMET 4v8c CD 77 3.3 RF00005 URS000057545F_1110693 22437501 0030533 0006412 1110693 cgcgggguggagcagcccgguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<.<<..<<<<.........>>>>.<<<<<.......>>>>>......<<<<.......>>>>.>.>>>>..... .((..(...((((.........))))..(((.........)))......(((((.......))))).)..))..... Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).; TRNA-FMET 4v8c DB 87 3.3 RF00005 URS00004630EA_1110693 22437501 0030533 0006412 1110693 gccgaggugguggaauugguagacacgcuaccuugaggugguagugcccaauagggcuuacggguucaagucccguccucgguacca <<<<<<<..<<<...........>>><<<<<<.......>>>>>><<<<....>>>>..<<<<<.......>>>>>>>>>>>>.... (((((((..(((...........))).(((((.......))))).((((....))))..(((((.......)))))))))))).... Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).; TRNA-LEU 4v8c DC 77 3.3 RF00005 URS000057545F_1110693 22437501 0030533 0006412 1110693 cgcgggguggagcagcccgguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).; TRNA-FMET 4v8c DD 77 3.3 RF00005 URS000057545F_1110693 22437501 0030533 0006412 1110693 cgcgggguggagcagcccgguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<.<<..<<<<.........>>>>.<<<<<.......>>>>>......<<<.........>>>.>.>>>>..... .((.((...(((...........))).(((((.......))))).....(((((.......))))).).)))..... Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).; TRNA-FMET 4v8d AB 85 3.0 RF00005 URS00002D9DE2_1110693 22437501 0030533 0006412 1110693 ggugggguucccgagcggccaaagggagcagacuguanaucugccgucaucgacuucgaagguucgaauccuucccccaccacca <<<<<<<..<<<...........>>>.<<<<<.......>>>>>.<<<...>>>...<<<<<.......>>>>>>>>>>>>.... ((.((((..(((.....[.....))).(((((.......)))))..((...))....(((((..]....))))))))).)).... Structure analysis of ribosomal decoding (cognate tRNA-tyr complex).; TRNA-TYR 4v8d AC 77 3.0 RF00005 URS000057545F_1110693 22437501 0030533 0006412 1110693 cgcgggguggagcagcccgguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Structure analysis of ribosomal decoding (cognate tRNA-tyr complex).; TRNA-FMET 4v8d AD 85 3.0 RF00005 URS00002D9DE2_1110693 22437501 0030533 0006412 1110693 ggugggguucccgagcggccaaagggagcagacuguanaucugccgucaucgacuucgaagguucgaauccuucccccaccacca <<<<<<<..<<<...........>>>.<<<<<.......>>>>>.<<<...>>>...<<<<<.......>>>>>>>>>>>>.... (((((((..(((.....[.....))).(((((.......))))).(((...)))...(((((..]....)))))))))))).... Structure analysis of ribosomal decoding (cognate tRNA-tyr complex).; TRNA-TYR 4v8d CB 85 3.0 RF00005 URS00002D9DE2_1110693 22437501 0030533 0006412 1110693 ggugggguucccgagcggccaaagggagcagacuguanaucugccgucaucgacuucgaagguucgaauccuucccccaccacca <<<<<<<..<<<...........>>>..<<<<.......>>>>..<<<...>>>...<<<<<.......>>>>>>>>>>>>.... ((.((.(..(((...........))).(((((.......))))).(.(...).)...(((((.......)))))).)).)).... Structure analysis of ribosomal decoding (cognate tRNA-tyr complex).; TRNA-TYR 4v8d CC 77 3.0 RF00005 URS000057545F_1110693 22437501 0030533 0006412 1110693 cgcgggguggagcagcccgguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Structure analysis of ribosomal decoding (cognate tRNA-tyr complex).; TRNA-FMET 4v8d CD 85 3.0 RF00005 URS00002D9DE2_1110693 22437501 0030533 0006412 1110693 ggugggguucccgagcggccaaagggagcagacuguanaucugccgucaucgacuucgaagguucgaauccuucccccaccacca <<<<<<<..<<<...........>>>.<<<<<.......>>>>>.<<<...>>>...<<<<<.......>>>>>>>>>>>>.... (((((((..(((.....[.....))).(((((.......))))).(((...)))...(((((..]....)))))))))))).... Structure analysis of ribosomal decoding (cognate tRNA-tyr complex).; TRNA-TYR 4v8e BB 85 3.3 RF00005 URS00002D9DE2_1110693 22437501 0030533 0006412 1110693 ggugggguucccgagcggccaaagggagcagacuguanaucugccgucaucgacuucgaagguucgaauccuucccccaccacca <<<<<<<..<<<...........>>>.<<<<<.......>>>>>.<<<...>>>...<<<<<.......>>>>>>>>>>>>.... (((((((..(((.....[.....))).(((((.......))))).(((...)))...(((((..]....)))))))))))).... Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).; TRNA-TYR 4v8e BC 77 3.3 RF00005 URS000057545F_1110693 22437501 0030533 0006412 1110693 cgcgggguggagcagcccgguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).; TRNA-FMET 4v8e BD 85 3.3 RF00005 URS00002D9DE2_1110693 22437501 0030533 0006412 1110693 ggugggguucccgagcggccaaagggagcagacuguanaucugccgucaucgacuucgaagguucgaauccuucccccaccacca <<<<<<<..<<<...........>>>.<<<<<.......>>>>>.<<<...>>>...<<<<<.......>>>>>>>>>>>>.... (((((((..(((.....[.....))).(((((.......))))).(((...)))...(((((..]....)))))))))))).... Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).; TRNA-TYR 4v8e DB 85 3.3 RF00005 URS00002D9DE2_1110693 22437501 0030533 0006412 1110693 ggugggguucccgagcggccaaagggagcagacuguanaucugccgucaucgacuucgaagguucgaauccuucccccaccacca <<<<<<<..<<<...........>>>.<<<<<.......>>>>>.<<<...>>>...<<<<<.......>>>>>>>>>>>>.... (((((((..(((.....[.....))).(((((.......))))).(((...)))...(((((..]....)))))))))))).... Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).; TRNA-TYR 4v8e DC 77 3.3 RF00005 URS000057545F_1110693 22437501 0030533 0006412 1110693 cgcgggguggagcagcccgguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).; TRNA-FMET 4v8e DD 85 3.3 RF00005 URS00002D9DE2_1110693 22437501 0030533 0006412 1110693 ggugggguucccgagcggccaaagggagcagacuguanaucugccgucaucgacuucgaagguucgaauccuucccccaccacca <<<<<<<..<<<...........>>>.<<<<<.......>>>>>.<<<...>>>...<<<<<.......>>>>>>>>>>>>.... (((((((..(((.....[.....))).(((((.......))))).(((...)))...(((((..]....)))))))))))).... Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).; TRNA-TYR 4v8f BB 85 3.3 RF00005 URS00002D9DE2_1110693 22437501 0030533 0006412 1110693 ggugggguucccgagcggccaaagggagcagacuguanaucugccgucaucgacuucgaagguucgaauccuucccccaccacca <<<<<<<..<<<...........>>>.<<<<<.......>>>>>.<<<...>>>...<<<<<.......>>>>>>>>>>>>.... (((((.(..(((...........))).(((((.......))))).(((...)))...(((((.......)))))).))))).... Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).; TRNA-TYR 4v8f BC 77 3.3 RF00005 URS000057545F_1110693 22437501 0030533 0006412 1110693 cgcgggguggagcagcccgguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).; TRNA-FMET 4v8f BD 85 3.3 RF00005 URS00002D9DE2_1110693 22437501 0030533 0006412 1110693 ggugggguucccgagcggccaaagggagcagacuguanaucugccgucaucgacuucgaagguucgaauccuucccccaccacca <<<<<<<..<<<...........>>>.<<<<<.......>>>>>.<<<...>>>...<<<<<.......>>>>>>>>>>>>.... (((((((..(((.....[.....))).(((((.......))))).(((...)))...(((((..]....)))))))))))).... Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).; TRNA-TYR 4v8f CB 85 3.3 RF00005 URS00002D9DE2_1110693 22437501 0030533 0006412 1110693 ggugggguucccgagcggccaaagggagcagacuguanaucugccgucaucgacuucgaagguucgaauccuucccccaccacca <<<<<<<..<<<...........>>>.<<<<<.......>>>>>.<<<...>>>...<<<<<.......>>>>>>>>>>>>.... ((.((((..((.............)).(((((.......))))).(((...)))...(((((.......))))))))).)).... Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).; TRNA-TYR 4v8f CC 77 3.3 RF00005 URS000057545F_1110693 22437501 0030533 0006412 1110693 cgcgggguggagcagcccgguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).; TRNA-FMET 4v8f CD 85 3.3 RF00005 URS00002D9DE2_1110693 22437501 0030533 0006412 1110693 ggugggguucccgagcggccaaagggagcagacuguanaucugccgucaucgacuucgaagguucgaauccuucccccaccacca <<<<<<<..<<<...........>>>.<<<<<.......>>>>>.<<<...>>>...<<<<<.......>>>>>>>>>>>>.... (((((((..(((.....[..[..))).(((((.......))))).(((...)))]..(((((..]....)))))))))))).... Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).; TRNA-TYR 4v8j AW 76 3.9 RF00005 URS00005AA258_1110693 23630274 0030533 0006412 1110693 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... ((((((...((((.....[..)))).((((.........)))).....(((((..]....))))).)))))).... Crystal structure of the bacterial ribosome ram mutation G347U.; tRNA-Phe 4v8j AV 77 3.9 RF00005 URS000041AF00_1110693 23630274 0030533 0006412 1110693 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((.(..((.(......[..).)).(((((.......))))).....((((...].....))))).))))..... Crystal structure of the bacterial ribosome ram mutation G347U.; tRNA-fMet 4v8j AY 17 3.9 RF00005 URS00005AA258_1110693 23630274 0030533 0006412 1110693 ggggauugaaaaucccc <<<<<<.....>>>>>> .((((.......)))). Crystal structure of the bacterial ribosome ram mutation G347U.; tRNA-Phe 4v8j CW 76 3.9 RF00005 URS00005AA258_1110693 23630274 0030533 0006412 1110693 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<..........>>>.<<<<<.......>>>>>.....<<<.<........>>>>>>>>>>>.... .....((..(((..........))).(((...........)))......((...........)).))......... Crystal structure of the bacterial ribosome ram mutation G347U.; tRNA-Phe 4v8j CV 77 3.9 RF00005 URS000041AF00_1110693 23630274 0030533 0006412 1110693 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ..(((((..((((......[..)))).(((((.......))))).....(.(((..]....))).))))))...... Crystal structure of the bacterial ribosome ram mutation G347U.; tRNA-fMet 4v8j CY 17 3.9 RF00005 URS00005AA258_1110693 23630274 0030533 0006412 1110693 ggggauugaaaaucccc .<<<<<.....>>>>>. .((((.......)))). Crystal structure of the bacterial ribosome ram mutation G347U.; tRNA-Phe 4v8m AB 73 5.57 RF00005 URS000035465A_5691 23395961 0030533 0006412 5691 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggca <<<.......<<..........>>...<<<<<.....>>>>>.......<<...........>>....>.>>. ((........(............)...(((((.....))))).......((((.......))))......)). High-resolution cryo-electron microscopy structure of the Trypanosoma brucei ribosome; E-SITE TRNA 4v8n AV 78 3.1 RF00005 URS000080E382_2238 23542153 0030533 0006412 2238 gggcccuuagcuuagucugguuaaagcgaucggcunauaaccgauugggcgcugguucgaauccggcagggcccacca <<<<<<<...<<<..........>>>.<<<<<<.......>>>>>>....<<<<<.......>>>>>>>>>>>>.... .((((.(....((..........))..((((((.......))))))....(((((.......)))))).))))..... The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.; E-SITE TRNA ILE2 AGMATIDINE OR P-SITE TRNA ILE2 AGMATIDINE 4v8n AW 78 3.1 RF00005 URS000080E067_2238 23542153 0030533 0006412 2238 gggcccuuagcuuagucugguuaaagcgaucggcucauaaccgauugggcgcugguucgaauccggcagggcccacca .<<.<<....<<............>>.<<<<<<.......>>>>>>....<<<<<.......>>>>>.>>..>>.... .((.........(...........)...(((((.......))))).......(((.......))).......)).... The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.; A-SITE TRNA ILE2 AGMATIDINE 4v8n AY 78 3.1 RF00005 URS000080E382_2238 23542153 0030533 0006412 2238 gggcccuuagcuuagucugguuaaagcgaucggcunauaaccgauugggcgcugguucgaauccggcagggcccacca .<<<<<<..<<<<..........>>>><<<<<<.......>>>>>>....<<<<<.......>>>>>>>>>>>..... ...((.(....((..........))..((((((.......)))))).....((((.......)))).).))....... The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.; E-SITE TRNA ILE2 AGMATIDINE OR P-SITE TRNA ILE2 AGMATIDINE 4v8n CV 78 3.1 RF00005 URS000080E382_2238 23542153 0030533 0006412 2238 gggcccuuagcuuagucugguuaaagcgaucggcunauaaccgauugggcgcugguucgaauccggcagggcccacca <<<<<<<...<<<..........>>>.<<<<<<.......>>>>>>....<<<<<.......>>>>>>>>>>>>.... .((((((...(((..........))).((((((.......))))))....(((((.......)))))))))))..... The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.; E-SITE TRNA ILE2 AGMATIDINE OR P-SITE TRNA ILE2 AGMATIDINE 4v8n CW 78 3.1 RF00005 URS000080E067_2238 23542153 0030533 0006412 2238 gggcccuuagcuuagucugguuaaagcgaucggcucauaaccgauugggcgcugguucgaauccggcagggcccacca .<<.<<....<<............>>.<<<<<<.......>>>>>>....<<<<<.......>>>>>.>>..>>.... .((.........(...........)...(((((.......))))).......(((.......))).......)).... The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.; A-SITE TRNA ILE2 AGMATIDINE 4v8n CY 78 3.1 RF00005 URS000080E382_2238 23542153 0030533 0006412 2238 gggcccuuagcuuagucugguuaaagcgaucggcunauaaccgauugggcgcugguucgaauccggcagggcccacca .<<<<<<..<<<<..........>>>><<<<<<.......>>>>>>....<<<<<.......>>>>>>>>>>>..... ...((.(..((((..........))))((((((.......)))))).....((((.......)))).).))....... The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.; E-SITE TRNA ILE2 AGMATIDINE OR P-SITE TRNA ILE2 AGMATIDINE 4v8o AV 77 3.8 RF00005 URS000041AF00_83333 21903932 0030533 0006412 83333 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .(((((...((((......[..)))).(((((.......))))).....(.((...].....)).).)))))..... Crystal structure of the hybrid state of ribosome in complex with the guanosine triphosphatase release factor 3; PE HYBRID STATE TRNA FMET 4v8q BV 77 3.1 RF00005 URS000041AF00_83333 22422985 0030533 0006412 83333 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome; E-SITE or P-SITE TRNA FMET 4v8q BW 77 3.1 RF00005 URS000041AF00_83333 22422985 0030533 0006412 83333 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((....(...........)...(.(((.......))).).........(.......)....))))))..... Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome; E-SITE or P-SITE TRNA FMET 4v8q BY 62 3.1 RF00023 URS000080E208_300852 22422985 0006401 300852 gggggugaaacggucucgacagggccuuuggacguggguucgacucccaccaccuccaccaA <<<<<<<............<<<<...>>>>...<<<<<.......>>>>>>>>>>>>..... (((((((.....[......(((((.)))))...(((((..]....)))))))))))).... Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome; TMRNA DELA 4v8u AV 76 3.7 RF00005 URS00005AA258_300852 23527033 0030533 0006412 300852 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).(((((.......))))).....((.((..]....)).))))))))).... Crystal Structure of 70S Ribosome with Both Cognate tRNAs in the E and P Sites Representing an Authentic Elongation Complex.; MRNA 4v8u AW 77 3.7 RF00005 URS000041AF00_300852 23527033 0030533 0006412 300852 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<...........>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(.(((..]....))).)))))))..... Crystal Structure of 70S Ribosome with Both Cognate tRNAs in the E and P Sites Representing an Authentic Elongation Complex.; RNA 4v8u CV 76 3.7 RF00005 URS00005AA258_300852 23527033 0030533 0006412 300852 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).(((((.......))))).....((.((..]....)).))))))))).... Crystal Structure of 70S Ribosome with Both Cognate tRNAs in the E and P Sites Representing an Authentic Elongation Complex.; MRNA 4v8u CW 77 3.7 RF00005 URS000041AF00_300852 23527033 0030533 0006412 300852 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(.(((..]....))).)))))))..... Crystal Structure of 70S Ribosome with Both Cognate tRNAs in the E and P Sites Representing an Authentic Elongation Complex.; RNA 4v8x AV 77 3.35 RF00005 URS000041AF00_300852 23945936 0030533 0006412 300852 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Structure of Thermus thermophilus ribosome; transfer RNA 4v8x AW 77 3.35 RF00005 URS000041AF00_300852 23945936 0030533 0006412 300852 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<...<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>.>>>>>..... .(((.((..(((...........))).(((...........))).....(...(.......)...))).)))..... Structure of Thermus thermophilus ribosome; transfer RNA 4v8x CV 77 3.35 RF00005 URS000041AF00_300852 23945936 0030533 0006412 300852 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Structure of Thermus thermophilus ribosome; transfer RNA 4v8x CW 77 3.35 RF00005 URS000041AF00_300852 23945936 0030533 0006412 300852 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<...<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>.>>>>>..... .((((.(..(((...........))).(((...........))).....(...(.......)...)).))))..... Structure of Thermus thermophilus ribosome; transfer RNA 4v8y CW 74 4.3 RF00005 URS00005AA258_4932 24200810 0030533 0006412 4932 gcccggauagcucaggguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<......>>>><<<<<<<.....>>>>>>.>...<<<<<.......>>>>>>>>>>>>.... (((((((..((.(...[..).))..((((.......))))......(((((..]....)))))))))))).... Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex; EUKARYOTIC RIBOSOMAL P_E TRNA 4v8z CW 76 6.6 RF00005 URS000080E129_4932 24200810 0030533 0006412 4932 gcccggauagcucagucgguagagcaggggauucauaauccccguguccuugguucgauuccgaguccgggcacca ....<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>........ ..(.(((..((((........)))).(((((.......))))).....(((((.......)))))))).)...... Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex; EUKARYOTIC RIBOSOMAL PI TRNA 4v90 AV 76 2.95 RF00005 URS000080DEEA_300852 23912278 0030533 0006412 300852 gcccggauagcucagccgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((.(.....[..).))..((((.......))))......(((((..]....)))))))))))).... Thermus thermophilus Ribosome; RNA (77-MER) 4v95 AV 77 3.2 RF00005 URS000041AF00_300852 22422986 0030533 0006412 300852 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of YAEJ bound to the 70S ribosome; P-site fMet-tRNA 4v95 CV 77 3.2 RF00005 URS000041AF00_300852 22422986 0030533 0006412 300852 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of YAEJ bound to the 70S ribosome; P-site fMet-tRNA 4v97 AV 77 3.516 RF00005 URS000041AF00_83333 23630274 0030533 0006412 83333 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the bacterial ribosome ram mutation G299A.; P-SITE tRNA fMet 4v97 AW 76 3.516 RF00005 URS00005AA258_83333 23630274 0030533 0006412 83333 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... ((((.((..((((........)))).((((.........)))).....(((((.......))))))).)))).... Crystal structure of the bacterial ribosome ram mutation G299A.; E-SITE TRNA PHE OR A-SITE tRNA Phe 4v97 AY 17 3.516 RF00005 URS00005AA258_83333 23630274 0030533 0006412 83333 ggggauugaaaaucccc <<<<<<.....>>>>>> .((((.......)))). Crystal structure of the bacterial ribosome ram mutation G299A.; E-SITE TRNA PHE OR A-SITE tRNA Phe 4v97 CV 77 3.516 RF00005 URS000041AF00_83333 23630274 0030533 0006412 83333 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))..... Crystal structure of the bacterial ribosome ram mutation G299A.; P-SITE tRNA fMet 4v97 CW 76 3.516 RF00005 URS00005AA258_83333 23630274 0030533 0006412 83333 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<.<<..<<<..........>>>.<<<<<.......>>>>>.....<<<...........>>>>>.>>>>.... (((...(..(((..........))).((((.........)))).....(((...........))))...))).... Crystal structure of the bacterial ribosome ram mutation G299A.; E-SITE TRNA PHE OR A-SITE tRNA Phe 4v97 CY 17 3.516 RF00005 URS00005AA258_83333 23630274 0030533 0006412 83333 ggggauugaaaaucccc <<<<<<.....>>>>>> .((((.......)))). Crystal structure of the bacterial ribosome ram mutation G299A.; E-SITE TRNA PHE OR A-SITE tRNA Phe 4v9a AC 77 3.2999 RF00005 URS000057545F_300852 23431179 0030533 0006412 300852 cgcgggguggagcagcccgguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal Structure of the 70S ribosome with tetracycline.; TRNA-FMET 4v9a CC 77 3.2999 RF00005 URS000057545F_300852 23431179 0030533 0006412 300852 cgcgggguggagcagcccgguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal Structure of the 70S ribosome with tetracycline.; TRNA-FMET 4v9b AC 77 3.1 RF00005 URS000057545F_300852 23431179 0030533 0006412 300852 cgcgggguggagcagcccgguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))..... Crystal Structure of the 70S ribosome with tigecycline.; TRNA-FMET 4v9b AD 77 3.1 RF00005 URS000057545F_300852 23431179 0030533 0006412 300852 cgcgggguggagcagcccgguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>......<<<.........>>>.>>>>>>..... .((((((..((((......[..)))).(((((.......))))).......((...].....))..))))))..... Crystal Structure of the 70S ribosome with tigecycline.; TRNA-FMET 4v9b CC 77 3.1 RF00005 URS000057545F_300852 23431179 0030533 0006412 300852 cgcgggguggagcagcccgguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal Structure of the 70S ribosome with tigecycline.; TRNA-FMET 4v9b CD 77 3.1 RF00005 URS000057545F_300852 23431179 0030533 0006412 300852 cgcgggguggagcagcccgguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca ..<<<<...<<<...........>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>.>>>>...... .....((..(((...........))).(((((.......))))).....((.((.......)).))))......... Crystal Structure of the 70S ribosome with tigecycline.; TRNA-FMET 4v9c AV 76 3.3 RF00005 URS00005AA258_83333 22902368 0030533 0006412 83333 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).(((((.......))))).....((.((..]....)).))))))))).... Allosteric control of the ribosome by small-molecule antibiotics; Phenylalanine specific transfer RNA, tRNA-Phe 4v9c CV 76 3.3 RF00005 URS00005AA258_83333 22902368 0030533 0006412 83333 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca ..<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>.>>..... ...(((....(((.....[..)))(.(((((.......))))))....(......]........).)).)...... Allosteric control of the ribosome by small-molecule antibiotics; Phenylalanine specific transfer RNA, tRNA-Phe 4v9d AV 76 3.0 RF00005 URS00005AA258_83333 21596992 0030533 0006412 83333 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).(((((.......))))).....(((((..]....)))))))))))).... Structures of the bacterial ribosome in classical and hybrid states of tRNA binding; phenylalanine specific transfer RNA 4v9d BV 76 3.0 RF00005 URS00005AA258_83333 21596992 0030533 0006412 83333 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).(((((.......))))).....(((((..]....)))))))))))).... Structures of the bacterial ribosome in classical and hybrid states of tRNA binding; phenylalanine specific transfer RNA 4v9h AV 74 2.857 RF00005 URS00005AA258_562 23812720 0030533 0006412 562 gcccggauagcucaggguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<......>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((.(...[..).))..((((.......))))......(((((..]....)))))))))))).... Crystal structure of the ribosome bound to elongation factor G in the guanosine triphosphatase state; PE hybrid state tRNA Phe 4v9i AV 77 3.3 RF00005 URS000041AF00_562 23812587 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon; P-SITE tRNA 4v9i AW 76 3.3 RF00005 URS00005AA258_562 23812587 0030533 0006412 562 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).((((.........)))).......(((..]....)))..))))))).... Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon; E-SITE tRNA 4v9i AY 75 3.3 URS000080E218_562 23812587 0030533 0006412 562 ggagagaugccggagcggcugaaggaccggucucgaaaaccggaguaggggcaacucuaccggggguucaaaucc ...<<<...<<............>>..<<<<.......>>>>.........<.........>....>>>...... ..........(............)....(((.......)))..........(.........)............. Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon; A-SITE tRNA 4v9i CV 77 3.3 RF00005 URS000041AF00_562 23812587 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon; P-SITE tRNA 4v9i CW 76 3.3 RF00005 URS00005AA258_562 23812587 0030533 0006412 562 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... ((((.....((((........))))..((...........).).....(.((.........)).)...)))).... Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon; E-SITE tRNA 4v9i CY 75 3.3 URS000080E218_562 23812587 0030533 0006412 562 ggagagaugccggagcggcugaaggaccggucucgaaaaccggaguaggggcaacucuaccggggguucaaaucc ...<<<...<<............>>..<<<<.......>>>>.........<.........>....>>>...... ..........(............)....(((.......)))..........(.........)............. Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon; A-SITE tRNA 4v9j AW 77 3.86 RF00005 URS0000093D11_562 23812722 0030533 0006412 562 ggcuacguagcucaguugguuagagcacaucacucauaaugauggggucacagguucgaaucccgucguagccacca <<<<<<<..<<<...........>>>.<<<<<.......>>>>>.....<<.<<.......>>.>>>>>>>>>.... (((((((..(((...........))).(((((.......)))))........((.......))...))))))).... 70S ribosome translocation intermediate GDPNP-II containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state.; tRNA-Met 4v9j CW 77 3.86 RF00005 URS0000093D11_562 23812722 0030533 0006412 562 ggcuacguagcucaguugguuagagcacaucacucauaaugauggggucacagguucgaaucccgucguagccacca .<<<<<<..<<<...........>>>.<<<<<.......>>>>>.....<<.<<.......>>.>>>>>>>>..... (((((((..(((...........))).(((((.......)))))........((.......))...))))))).... 70S ribosome translocation intermediate GDPNP-II containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state.; tRNA-Met 4v9k AW 77 3.5 RF00005 URS0000093D11_562 23812722 0030533 0006412 562 ggcuacguagcucaguugguuagagcacaucacucauaaugauggggucacagguucgaaucccgucguagccacca <<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<.<<.......>>.>>>>>>>>>.... (((((((..((((.........)))).(((((.......))))).....((.((.......)).))))))))).... 70S ribosome translocation intermediate GDPNP-I containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state.; transfer RNA 4v9k CW 77 3.5 RF00005 URS0000093D11_562 23812722 0030533 0006412 562 ggcuacguagcucaguugguuagagcacaucacucauaaugauggggucacagguucgaaucccgucguagccacca <<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<.<<.......>>.>>>>>>>>>.... .((((((..((((.....[...)))).(((((.......))))).....((.((..]....)).))))))))..... 70S ribosome translocation intermediate GDPNP-I containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state.; transfer RNA 4v9l AW 77 3.5 RF00005 URS0000093D11_562 23812722 0030533 0006412 562 ggcuacguagcucaguugguuagagcacaucacucauaaugauggggucacagguucgaaucccgucguagccacca <<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<.<<.......>>.>>>>>>>>>.... (((((((..(((...........))).(((((.......)))))........((.......))...))))))).... 70S Ribosome translocation intermediate FA-3.6A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state.; transfer RNA 4v9l CW 77 3.5 RF00005 URS0000093D11_562 23812722 0030533 0006412 562 ggcuacguagcucaguugguuagagcacaucacucauaaugauggggucacagguucgaaucccgucguagccacca <<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<.<<.......>>.>>>>>>>>>.... .((((((..(((...........))).(((((.......))))).....((.((.......)).))))))))..... 70S Ribosome translocation intermediate FA-3.6A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state.; transfer RNA 4v9m AW 77 4.0 RF00005 URS0000093D11_562 23812722 0030533 0006412 562 ggcuacguagcucaguugguuagagcacaucacucauaaugauggggucacagguucgaaucccgucguagccacca <<<<<<<..<<<...........>>>.<<<<<.......>>>>>.....<<.<<.......>>.>>>>>>>>>.... (((((((..(((...........))).(((((.......)))))........((.......))...))))))).... 70S Ribosome translocation intermediate FA-4.2A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state.; transfer RNA 4v9m CW 77 4.0 RF00005 URS0000093D11_562 23812722 0030533 0006412 562 ggcuacguagcucaguugguuagagcacaucacucauaaugauggggucacagguucgaaucccgucguagccacca <<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<.<<.......>>.>>>>>>>>>.... .((((((..(((...........))).(((((.......))))).....((.((.......)).))))))))..... 70S Ribosome translocation intermediate FA-4.2A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state.; transfer RNA 4v9n AW 77 3.4 RF00005 URS000041AF00_262724 23769667 0030533 0006412 262724 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the 70S ribosome bound with the Q253P mutant of release factor RF2.; P-site tRNA-fMet 4v9n CW 77 3.4 RF00005 URS000041AF00_262724 23769667 0030533 0006412 262724 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the 70S ribosome bound with the Q253P mutant of release factor RF2.; P-site tRNA-fMet 4v9q BV 77 3.4 RF00005 URS000041AF00_512 23824292 0030533 0006412 512 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.; tRNA 4v9q BW 77 3.4 RF00005 URS000041AF00_512 23824292 0030533 0006412 512 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.; tRNA 4v9q DV 77 3.4 RF00005 URS000041AF00_512 23824292 0030533 0006412 512 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.; tRNA 4v9q DW 77 3.4 RF00005 URS000041AF00_512 23824292 0030533 0006412 512 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.; tRNA 4v9r AX 76 3.0 RF00005 URS000041AF00_562 24412368 0030533 0006412 562 gcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of antibiotic DITYROMYCIN bound to 70S ribosome; P-site tRNA 4v9r CX 76 3.0 RF00005 URS000041AF00_562 24412368 0030533 0006412 562 gcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of antibiotic DITYROMYCIN bound to 70S ribosome; P-site tRNA 4v9s AX 76 3.1 RF00005 URS000041AF00_562 24412368 0030533 0006412 562 gcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of antibiotic GE82832 bound to 70S ribosome; P-site tRNA 4v9s CX 76 3.1 RF00005 URS000041AF00_562 24412368 0030533 0006412 562 gcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of antibiotic GE82832 bound to 70S ribosome; P-site tRNA 4w29 AW 77 3.8 RF00005 URS0000093D11_562 25190797 0030533 0006412 562 ggcuacguagcucaguugguuagagcacaucacucauaaugauggggucacagguucgaaucccgucguagccacca .<<<<<<..<<<...........>>>.<<<<<.......>>>>>......<.<<.......>>.>.>>>>>>..... .((((((..(((...........))).(((((.......)))))........((.......))...))))))..... 70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.; tRNA 4w29 AX 78 3.8 RF00005 URS000080E345_562 25190797 0030533 0006412 562 gggugauuagcucagcugggagagcaccucccuuacaaggagggggucggcgguucgaucccgucaucacccaccaVn .<<<<<<..<<<<........>>>>.<<<<<.......>>>>>......................>>>>>>....... (((((((..((((........)))).(((((.......))))).....(...............)))))))).... 70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.; tRNA 4w29 CW 77 3.8 RF00005 URS0000093D11_562 25190797 0030533 0006412 562 ggcuacguagcucaguugguuagagcacaucacucauaaugauggggucacagguucgaaucccgucguagccacca .<<<<<<..<<<...........>>>.<<<<<.......>>>>>......<.<<.......>>.>.>>>>>>..... .((((((..(((...........))).(((((.......)))))........((.......))...))))))..... 70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.; tRNA 4w29 CX 78 3.8 RF00005 URS000080E345_562 25190797 0030533 0006412 562 gggugauuagcucagcugggagagcaccucccuuacaaggagggggucggcgguucgaucccgucaucacccaccaVn <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>......<<<<.......>>>>.>>>>>>>...... .((((((..((((........)))).(((((.......))))).......(((.......)))..))))))..... 70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.; tRNA 4w2e x 74 2.9 RF00005 URS00005AA258_562 25104389 0030533 0006412 562 gcccgganagcucaggguagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<......>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((...[..)))).((((.........)))).....(((((..]....)))))))))))).... Crystal structure of Elongation Factor 4 (EF4/LepA) bound to the Thermus thermophilus 70S ribosome; E-site tRNA 4w2e w 76 2.9 RF00005 URS00005AA258_562 25104389 0030533 0006412 562 gcccgganagcucagucgguagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).((((.........)))).....(((((..]....)))))))))))).... Crystal structure of Elongation Factor 4 (EF4/LepA) bound to the Thermus thermophilus 70S ribosome; E-site tRNA 4w2f AW 74 2.4 RF00005 URS00005AA258_562 25306919 0030533 0006412 562 gcccgganagcucaggguagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<......>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((...[..)))).((((.........)))).....(((((..]....)))))))))))).... Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites; A/P-site tRNA 4w2f AX 76 2.4 RF00005 URS000041AF00_562 25306919 0030533 0006412 562 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites; E-site tRNA 4w2f AY 74 2.4 RF00005 URS00005AA258_562 25306919 0030533 0006412 562 gcccgganagcucaggguagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<......>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((......)))).((((.........)))).....(.(((.......))).)))))))).... Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites; A/P-site tRNA 4w2f CW 72 2.4 RF00005 URS00005AA258_562 25306919 0030533 0006412 562 cccgganagcucagggagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<..<<<<.....>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((...[.)))).((((.........)))).....(((((..]....)))))))))))..... Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites; A/P-site tRNA 4w2f CX 76 2.4 RF00005 URS000041AF00_562 25306919 0030533 0006412 562 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites; E-site tRNA 4w2f CY 73 2.4 RF00005 URS00005AA258_562 25306919 0030533 0006412 562 gcccgganagcucagggagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<.....>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....)))).((((.........)))).....((.((.......)).))))))))).... Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites; A/P-site tRNA 4w2g AW 74 2.55 RF00005 URS00005AA258_562 25306919 0030533 0006412 562 gcccgganagcucaggguagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<......>>>><<<<<<<.....>>>>>>.>...<<<<<.......>>>>>>>>>>>>.... (((((((..((((...[..)))).((((.........)))).....(((((..]....)))))))))))).... Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites; A/P-site tRNA 4w2g AX 76 2.55 RF00005 URS000041AF00_562 25306919 0030533 0006412 562 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites; E-site tRNA 4w2g AY 74 2.55 RF00005 URS00005AA258_562 25306919 0030533 0006412 562 gcccgganagcucaggguagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<......>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((......)))).((((.........)))).....((.((.......)).))))))))).... Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites; A/P-site tRNA 4w2g CW 72 2.55 RF00005 URS00005AA258_562 25306919 0030533 0006412 562 cccgganagcucagggagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<..<<<<.....>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((...[.)))).((((.........)))).....(((((..]....)))))))))))..... Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites; A/P-site tRNA 4w2g CX 76 2.55 RF00005 URS000041AF00_562 25306919 0030533 0006412 562 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites; E-site tRNA 4w2g CY 73 2.55 RF00005 URS00005AA258_562 25306919 0030533 0006412 562 gcccgganagcucagggagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<.....>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((...[.)))).((((.........)))).....((.((..]....)).))))))))).... Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites; A/P-site tRNA 4w2h AX 76 2.7 RF00005 URS000041AF00_562 25306919 0030533 0006412 562 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site; P-site tRNA 4w2h AY 18 2.7 RF00005 URS00005AA258_562 25306919 0030533 0006412 562 gcccggauccgggcacca <<<<<<..>>>>>>.... ((((((..)))))).... Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site; E-site tRNA Acceptor Stem 4w2h CX 76 2.7 RF00005 URS000041AF00_562 25306919 0030533 0006412 562 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site; P-site tRNA 4w2i AW 74 2.7 RF00005 URS00005AA258_562 25306922 0030533 0006412 562 gcccgganagcucaggguagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<......>>>><<<<<<<.....>>>>>>.>...<<<<<.......>>>>>>>>>>>>.... (((((((..((((......)))).((((.........)))).....(((((.......)))))))))))).... Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites; A/P-site tRNA 4w2i AX 76 2.7 RF00005 URS000041AF00_562 25306922 0030533 0006412 562 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites; E-site tRNA 4w2i AY 74 2.7 RF00005 URS00005AA258_562 25306922 0030533 0006412 562 gcccgganagcucaggguagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<......>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((...[..)))).((((.........)))).....(((((..]....)))))))))))).... Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites; A/P-site tRNA 4w2i CW 72 2.7 RF00005 URS00005AA258_562 25306922 0030533 0006412 562 cccgganagcucagggagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<..<<<<.....>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>..... (((((...((((...[.)))).((((.........)))).....(((((..]....))))).)))))..... Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites; A/P-site tRNA 4w2i CX 76 2.7 RF00005 URS000041AF00_562 25306922 0030533 0006412 562 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites; E-site tRNA 4w2i CY 73 2.7 RF00005 URS00005AA258_562 25306922 0030533 0006412 562 gcccgganagcucagggagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<.....>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....)))).((((.........)))).....((.((.......)).))))))))).... Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites; A/P-site tRNA 4w4g QV 77 3.3 RF00005 URS000041AF00_1403831 26508639 0030533 0006412 1403831 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Postcleavage state of 70S bound to HigB toxin and AAA (lysine) codon; tRNA fMet 4w4g QW 77 3.3 RF00005 URS000041AF00_1403831 26508639 0030533 0006412 1403831 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((.........)))).(((((.......))))).....(.(((.......))).)))))))..... Postcleavage state of 70S bound to HigB toxin and AAA (lysine) codon; tRNA fMet 4w4g XV 77 3.3 RF00005 URS000041AF00_1403831 26508639 0030533 0006412 1403831 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Postcleavage state of 70S bound to HigB toxin and AAA (lysine) codon; tRNA fMet 4w4g XW 77 3.3 RF00005 URS000041AF00_1403831 26508639 0030533 0006412 1403831 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))..... Postcleavage state of 70S bound to HigB toxin and AAA (lysine) codon; tRNA fMet 4w90 C 101 3.118 RF00379 URS000080DDC9_1423 25271255 0180001 0010468 1423 gcgcgcuuaaucugaaaucagagcgggggacccauugcacaggggugaauccuuuagguagggcgaaagcccgaauccgucagcuaaccucguaagcgcgc <<<<<<<...<<<<....>>>><<<<<<....<.........<<<.....<<<..>>>..<<<<....>>>>...>>>....>....>>>>>>.>>>>>>> (((((((...((((....))))((((((....(........(((((....(((..)))..((((....))))..))))..).)....)))))).))))))) Crystal structure of Bacillus subtilis cyclic-di-AMP riboswitch ydaO; riboswitch a pseudo-dimeric RNA 4w92 C 96 3.209 RF00379 URS000080DDC9_1423 25271255 0180001 0010468 1423 gcgcgcuuaaucugcagagcgggggacccauugcacucaggggugaauccugguagggcgaaagcccgaauccgucagcuaaccucguaagcgcgc <<<<<<<...<<<..>>><<<<<<....<...........<<<.....<<.>>..<<<<....>>>>...>>>....>....>>>>>>.>>>>>>> (((((((...(((())))((((((....(..........(((((....((.))..((((....))))..))))..).)....)))))).))))))) Crystal structure of Bacillus subtilis cyclic-di-AMP riboswitch ydaO; C-di-AMP ribsoswitch 4wc2 B 75 2.8 RF00005 URS000080DFBA_243274 25914059 0030533 0006412 243274 ggccagguagcucaguugguagagcacuggacugaaaauccaggugucggcgguucgauuccgccccuggccacc <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>... ((((.((..((((.....[..)))).(((((.......))))).....(((((..]....))))))).))))... Crystal structure of tRNA nucleotidyltransferase complexed with a primer tRNA and an incoming ATP analog; RNA 75-mer 4wc3 B 76 3.1 RF00005 URS00004EDC72_243274 25914059 0030533 0006412 243274 ggccagguagcucaguugguagagcacuggacugaaaauccaggugucggcgguucgauuccgccccuggccacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... ((((.((..((((.....[..)))).(((((.......))))).....(((((..]....))))))).)))).... Structure of tRNA-processing enzyme complex 1; RNA 76-mer 4wc4 B 74 3.501 RF00005 URS000080DF16_243274 25914059 0030533 0006412 243274 ggccagguagcucaguugguagagcacuggacugaaaauccaggugucggcgguucgauuccgccccuggccac <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.. ((((.((..((((.....[..))))...(((.......))).......(((((..]....))))))).)))).. tRNA-processing enzyme complex 2; RNA (74-MER) 4wc5 B 74 3.41 RF00005 URS000080DF16_243274 25914059 0030533 0006412 243274 ggccagguagcucaguugguagagcacuggacugaaaauccaggugucggcgguucgauuccgccccuggccac <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.. ((((.((..((((.....[..))))...(((.......))).......(((((..]....))))))).)))).. Structure of tRNA-processing enzyme complex 3; RNA (74-MER) 4wc6 B 75 3.41 RF00005 URS000080DFBA_243274 25914059 0030533 0006412 243274 ggccagguagcucaguugguagagcacuggacugaaaauccaggugucggcgguucgauuccgccccuggccacc <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>... ((((.((..((((.....[..))))...(((.......))).......(((((..]....))))))).))))... Structure of tRNA-processing enzyme complex 4; RNA (75-mer) 4wc7 B 75 3.102 RF00005 URS000080DFBA_243274 25914059 0030533 0006412 243274 ggccagguagcucaguugguagagcacuggacugaaaauccaggugucggcgguucgauuccgccccuggccacc <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>... ((((.((..((((.....[..))))...(((.......))).......(((((..]....))))))).))))... Structure of tRNA-processing enzyme complex 5; RNA (75-MER) 4wfl A 107 2.49 RF01854 URS000080DF51_224308 25270875 0006617 0048501 224308 ngccgugcuaagcggggagguagcggugcccuguaccugcaauccgcucuagcagggccgaaucccuucucgagguucgguaacgaaucgacagaaggugcacggun .<<<<<<<...<<((((....<<<<<..))))...(((((...>>>>>...)))))>>......<<<<<<...<<<<<<....>>>>>>...>>>>>>.>>>>>>>. .(((((((...((((((....[[[[[..))))...(((((...]]]]]...)))))))......((((((...((((((....))))))...)))))).))))))). Structure of the complete bacterial SRP Alu domain; RNA 4wfm A 103 3.1 RF01854 URS000080E098_224308 25270875 0006617 0048501 224308 ngccgugcuaagcggggagguagcggugcccuguaccugcaauccgcucuagcagggccgaaucccuucucgaggugguaacaucgacagaaggugcacggun <<<<<<<<...<<((((....<<<<<..))))...(((((...>>>>>...)))))>>......<<<<<<...<<<<....>>>>...>>>>>>.>>>>>>>> ((((((((...((((((....[[[[[..))))...(((((...]]]]]...)))))))......((((((...(((......)))...)))))).)))))))) Structure of the complete bacterial SRP Alu domain; Bacillus subtilis small cytoplasmic RNA (scRNA),RNA 4wfm B 103 3.1 RF01854 URS000080E098_224308 25270875 0006617 0048501 224308 ngccgugcuaagcggggagguagcggugcccuguaccugcaauccgcucuagcagggccgaaucccuucucgaggugguaacaucgacagaaggugcacggun <<<<<<<<...<<((((....<<<<<..))))...(((((...>>>>>...)))))>>......<<<<<<...<<<<....>>>>...>>>>>>.>>>>>>>> ((((((((...((((((....[[[[[[.))))...(((((.].]]]]]...)))))))......((((((...((((....))))...)))))).)))))))) Structure of the complete bacterial SRP Alu domain; Bacillus subtilis small cytoplasmic RNA (scRNA),RNA 4wj3 Q 76 3.705 RF00005 URS000044D8E3_208964 25548166 0030533 0006412 208964 uccgcgauagcucagucgguagagcaaaugacuguuaaucauugggucccugguucgaguccaggucgcggagcca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..(((......[...))).(((((.......))))).....(((((..]....)))))))))))).... Crystal structure of the asparagine transamidosome from Pseudomonas aeruginosa; 76mer-tRNA 4wj3 R 76 3.705 RF00005 URS000044D8E3_208964 25548166 0030533 0006412 208964 uccgcgauagcucagucgguagagcaaaugacuguuaaucauugggucccugguucgaguccaggucgcggagcca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..(((......[...))).(((((.......))))).....(((((..]....)))))))))))).... Crystal structure of the asparagine transamidosome from Pseudomonas aeruginosa; 76mer-tRNA 4wj3 S 76 3.705 RF00005 URS000044D8E3_208964 25548166 0030533 0006412 208964 uccgcgauagcucagucgguagagcaaaugacuguuaaucauugggucccugguucgaguccaggucgcggagcca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..(((......[...))).(((((.......))))).....(((((..]....)))))))))))).... Crystal structure of the asparagine transamidosome from Pseudomonas aeruginosa; 76mer-tRNA 4wj3 T 76 3.705 RF00005 URS000044D8E3_208964 25548166 0030533 0006412 208964 uccgcgauagcucagucgguagagcaaaugacuguuaaucauugggucccugguucgaguccaggucgcggagcca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..(((......[...))).(((((.......))))).....(((((..]....)))))))))))).... Crystal structure of the asparagine transamidosome from Pseudomonas aeruginosa; 76mer-tRNA 4wj4 B 76 3.294 RF00005 URS000044D8E3_208964 25548166 0030533 0006412 208964 uccgcgauagcucagucgguagagcaaaugacuguuaaucauugggucccugguucgaguccaggucgcggagcca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).(((((.......))))).....(((((..]....)))))))))))).... Crystal structure of non-discriminating aspartyl-tRNA synthetase from Pseudomonas aeruginosa complexed with tRNA(Asn) and aspartic acid; 76mer-tRNA 4woi AX 76 3.0 RF00005 URS00005AA258_1110693 26224058 0030533 0006412 1110693 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<.<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>.>>>.... ....((...((((.....[..)))).(((((.......))))).....(.((...].....)).).))........ 4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2; Phenylalanine specific transfer RNA, tRNA-Phe 4woi DW 76 3.0 RF00005 URS00005AA258_1110693 26224058 0030533 0006412 1110693 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).(((((.......))))).....(((((..]....)))))))))))).... 4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2; Phenylalanine specific transfer RNA, tRNA-Phe 4wpo BW 74 2.8 RF00005 URS00005AA258_1403831 25594181 0030533 0006412 1403831 gcccgganagcucaggguagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcaccn <<<<<<<..<<<<......>>>><<<<<<<.....>>>>>>.>...<<<<<.......>>>>>>>>>>>>.... ..(((((..((((......)))).((((.........)))).....(((((.......))))))))))...... Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state; A-site tRNA 4wpo BX 76 2.8 RF00005 URS000041AF00_1403831 25594181 0030533 0006412 1403831 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaaccn <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state; P-site tRNA 4wpo BY 74 2.8 RF00005 URS00005AA258_1403831 25594181 0030533 0006412 1403831 gcccgganagcucaggguagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<......>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((......)))).((((.........)))).....(((((.......)))))))))))).... Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state; E-site tRNA 4wpo DW 72 2.8 RF00005 URS00005AA258_1403831 25594181 0030533 0006412 1403831 cccgganagcucagggagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcaccn <<<<<<..<<<<.....>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((...(((...[.)))..((((.........)))).....(((((..]....)))))))))))..... Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state; A-site tRNA 4wpo DX 76 2.8 RF00005 URS000041AF00_1403831 25594181 0030533 0006412 1403831 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaaccn <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state; P-site tRNA 4wpo DY 73 2.8 RF00005 URS00005AA258_1403831 25594181 0030533 0006412 1403831 gcccgganagcucagggagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<.....>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....)))).((((.........)))).....(((((.......)))))))))))).... Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state; E-site tRNA 4wq1 1K 85 3.1 RF00005 URS00002D9DE2_83333 26037619 0030533 0006412 83333 gguggggnucccgagcngccaaagggagcagacunuanaucugccgucaucgacuucgaaggnucgaauccuucccccaccacca <<<<<<<..<<<...........>>>.<<<<<.......>>>>>.<<<...>>>...<<<<<.......>>>>>>>>>>>>.... (((((((..(((...........))).((((.........))))..((...))....(((((.......)))))))))))).... Complex of 70S ribosome with tRNA-Tyr and mRNA with C-A mismatch in the first position in the A-site.; tRNA-Tyr 4wq1 2K 77 3.1 RF00005 URS000057545F_83333 26037619 0030533 0006412 83333 cgcggggnggagcagcccggnagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Complex of 70S ribosome with tRNA-Tyr and mRNA with C-A mismatch in the first position in the A-site.; tRNA-fMET 4wq1 3K 74 3.1 RF00005 URS00002D9DE2_83333 26037619 0030533 0006412 83333 gguggggnucccgagcngccaaagggagcagacunuanaucugcccgaaggnucgaauccuucccccaccacca <<<<<<<..<<<...........>>>.<<<<<.......>>>>>..<<<<<.......>>>>>>>>>>>>.... (((((((..(((...........))).((((.........))))..(((((.......)))))))))))).... Complex of 70S ribosome with tRNA-Tyr and mRNA with C-A mismatch in the first position in the A-site.; tRNA-Tyr 4wq1 1L 74 3.1 RF00005 URS00002D9DE2_83333 26037619 0030533 0006412 83333 gguggggnucccgagcngccaaagggagcagacunuanaucugcccgaaggnucgaauccuucccccaccacca <<<<<<<..<<<...........>>>.<<<<<.......>>>>>..<<<<<.......>>>>>>>>>>>>.... ((..((...(((.....[.....))).((((.........))))..(((((..]....))))).))..)).... Complex of 70S ribosome with tRNA-Tyr and mRNA with C-A mismatch in the first position in the A-site.; tRNA-Tyr 4wq1 2L 77 3.1 RF00005 URS000057545F_83333 26037619 0030533 0006412 83333 cgcggggnggagcagcccggnagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Complex of 70S ribosome with tRNA-Tyr and mRNA with C-A mismatch in the first position in the A-site.; tRNA-fMET 4wq1 3L 75 3.1 RF00005 URS00002D9DE2_83333 26037619 0030533 0006412 83333 gguggggnucccgagcngccaaagggagcagacunuanaucugccucgaaggnucgaauccuucccccaccacca <<<<<<<..<<<...........>>>.<<<<<.......>>>>>...<<<<<.......>>>>>>>>>>>>.... (((((((..(.......[.......).((((.........))))...(((((..]....)))))))))))).... Complex of 70S ribosome with tRNA-Tyr and mRNA with C-A mismatch in the first position in the A-site.; tRNA-Tyr 4wqf BW 76 2.8 RF00005 URS00005AA258_1403831 25594181 0030533 0006412 1403831 gcccgganagcucagucgguagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).((((.........)))).....(((((..]....)))))))))))).... Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational state; P-site tRNA 4wqf BY 74 2.8 RF00005 URS00005AA258_1403831 25594181 0030533 0006412 1403831 gcccgganagcucaggguagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<......>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((......)))).((((.........)))).....(((((.......)))))))))))).... Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational state; P-site tRNA 4wqf DW 76 2.8 RF00005 URS00005AA258_1403831 25594181 0030533 0006412 1403831 gcccgganagcucagucgguagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).((((.........)))).....(((((..]....)))))))))))).... Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational state; P-site tRNA 4wqf DY 73 2.8 RF00005 URS00005AA258_1403831 25594181 0030533 0006412 1403831 gcccgganagcucagggagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<.....>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....)))).((((.........)))).....((.((.......)).))))))))).... Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational state; P-site tRNA 4wqr 1K 76 3.15 RF00005 URS00005AA258_83333 26037619 0030533 0006412 83333 gcccggauagcucagucgguagagcaggggauugaanauccccguguccuugguucgauuccgaguccgggcacca <<<<<<...<<<<........>>>>.<<<<<<.....>>>>>>......<<<<.......>>>.>.>>>>>>.... (.(((....((............)).((((.........)))).....(.(((.......))).)..)).)).... Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the first position in the A-site.; tRNA-Phe 4wqr 2K 77 3.15 RF00005 URS000057545F_83333 26037619 0030533 0006412 83333 cgcggggnggagcagcccgguagcucgucgggnucauaacccgaagnucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the first position in the A-site.; tRNA-fMet 4wqr 3K 76 3.15 RF00005 URS00005AA258_83333 26037619 0030533 0006412 83333 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca ...<<<<..<<.<........>.>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>.>...... (..((((...((..........))..(((((.......))))).....((((.........))))))))..).... Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the first position in the A-site.; tRNA-Phe 4wqr 1L 76 3.15 RF00005 URS00005AA258_83333 26037619 0030533 0006412 83333 gcccggauagcucagucgguagagcaggggauugaanauccccguguccuugguucgauuccgaguccgggcacca <<<.<<...<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>.>>.>>>.... ..(..((..(((..........))).(.((.........)).).....(..((.......))..)))..)...... Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the first position in the A-site.; tRNA-Phe 4wqr 2L 77 3.15 RF00005 URS000057545F_83333 26037619 0030533 0006412 83333 cgcggggnggagcagcccgguagcucgucgggnucauaacccgaagnucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the first position in the A-site.; tRNA-fMet 4wqr 3L 76 3.15 RF00005 URS00005AA258_83333 26037619 0030533 0006412 83333 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca ..<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<.........>>>>>>>>.>..... ..(((((..((((........)))).(((((.......))))).....(.(((.......))).))))).)..... Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the first position in the A-site.; tRNA-Phe 4wqu BW 76 2.8 RF00005 URS00005AA258_1403831 25594181 0030533 0006412 1403831 gcccgganagcucagucgguagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).((((.........)))).....(((((..]....)))))))))))).... Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin; P-site tRNA 4wqu BY 74 2.8 RF00005 URS00005AA258_1403831 25594181 0030533 0006412 1403831 gcccgganagcucaggguagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<......>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((......)))).((((.........)))).....(((((.......)))))))))))).... Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin; P-site tRNA 4wqu DW 76 2.8 RF00005 URS00005AA258_1403831 25594181 0030533 0006412 1403831 gcccgganagcucagucgguagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).((((.........)))).....((.((..]....)).))))))))).... Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin; P-site tRNA 4wqu DY 73 2.8 RF00005 URS00005AA258_1403831 25594181 0030533 0006412 1403831 gcccgganagcucagggagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<.....>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....)))).((((.........)))).....((.((.......)).))))))))).... Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin; P-site tRNA 4wqy BX 76 2.8 RF00005 URS000041AF00_1403831 25594181 0030533 0006412 1403831 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the post-translocational state (without fusitic acid); P-site tRNA 4wqy DX 76 2.8 RF00005 URS000041AF00_1403831 25594181 0030533 0006412 1403831 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the post-translocational state (without fusitic acid); P-site tRNA 4wr6 1K 85 3.05 RF00005 URS00002D9DE2_83333 26037619 0030533 0006412 83333 gguggggnucccgagcngccaaagggagcagacunuanaucugccgucaucgacuucgaaggnucgaauccuucccccaccacca <<<<<<<..<<<...........>>>.<<<<<.......>>>>>.<<<...>>>...<<<<<.......>>>>>>>>>>>>.... ((..(((..(.(.....[......)).((((.........)))).(((...)))...(.(((..]....))).))))..)).... Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site.; tRNA-Tyr 4wr6 2K 77 3.05 RF00005 URS000057545F_83333 26037619 0030533 0006412 83333 cgcggggnggagcagcccggnagcucgucgggnucauaacccgaagnucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site.; tRNA-fMet 4wr6 3K 85 3.05 RF00005 URS00002D9DE2_83333 26037619 0030533 0006412 83333 gguggggnucccgagcngccaaagggagcagacunuanaucugccgucaucgacuucgaaggnucgaauccuucccccaccacca <<<<<<<..<<<...........>>>.<<<<<.......>>>>>.<<<...>>>...<<<<<.......>>>>>>>>>>>>.... (((((((..(((.....[.....))).((((.........))))..((...))....(((((..]....)))))))))))).... Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site.; tRNA-Tyr 4wr6 1L 85 3.05 RF00005 URS00002D9DE2_83333 26037619 0030533 0006412 83333 ggugggguucccgagcggccaaagggagcagacuguaaaucugccgucaucgacuucgaagguucgaauccuucccccaccacca <<..<<<..<<<...........>>>.<<<<<.......>>>>>.<<<...>>>.....<<.........>>..>>>..>>.... ((...............[..........((((.......))))................(((..]....)).)......)).... Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site.; tRNA-Tyr 4wr6 2L 77 3.05 RF00005 URS000057545F_83333 26037619 0030533 0006412 83333 cgcggggnggagcagcccggnagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site.; tRNA-fMet 4wr6 3L 85 3.05 RF00005 URS00002D9DE2_83333 26037619 0030533 0006412 83333 ggugggguucccgagcggccaaagggagcagacuguaaaucugccgucaucgacuucgaagguucgaauccuucccccaccacca <<<<<<<..<<<...........>>>.<<<<<.......>>>>>.<<<...>>>...<<<<<.......>>>>>>>>>>>>.... (((..((..(((.....[.....))).(((((.......))))).............(((((..]....)))))))..))).... Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site.; tRNA-Tyr 4wra 1K 85 3.05 RF00005 URS00002D9DE2_562 26037619 0030533 0006412 562 ggugggguucccgagcggccaaagggagcagacunuanaucugccgucaucgacuucgaaggnucgaauccuucccccaccacca <<<<<<<..<<.............>>.<<<<<.......>>>>>.<<<...>>>...<<<<<.......>>>>>>>>>>>>.... ((..(.(..(.(...........).).((((.........)))).(.(...).)...(((((.......)))))).)..)).... Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site and with antibiotic paromomycin.; tRNA-Tyr 4wra 2K 77 3.05 RF00005 URS000057545F_562 26037619 0030533 0006412 562 cgcggggnggagcagcccgguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....((((...].....))))))))))..... Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site and with antibiotic paromomycin.; tRNA-fMet 4wra 3K 85 3.05 RF00005 URS00002D9DE2_562 26037619 0030533 0006412 562 ggugggguucccgagcggccaaagggagcagacuguaaaucugccgucaucgacuucgaagguucgaauccuucccccaccacca <<<<<<<..<<<...........>>>.<<<<<.......>>>>>.<<<...>>>...<<<<<.......>>>>>>>>>>>>.... (((((((..(((.....[.....))).((((.........))))..((...))....(((((..]....)))))))))))).... Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site and with antibiotic paromomycin.; tRNA-Tyr 4wra 1L 85 3.05 RF00005 URS00002D9DE2_562 26037619 0030533 0006412 562 ggugggguucccgagcggccaaagggagcagacuguaaaucugccgucaucgacuucgaagguucgaauccuucccccaccacca <<.<<<<..<<<...........>>>.<<<<<.......>>>>>.<<<...>>>...<<<<<.......>>>>>>>>>.>>.... ((..((((......)............((((.........)))).............(.(((.......))).))))..)).... Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site and with antibiotic paromomycin.; tRNA-Tyr 4wra 2L 77 3.05 RF00005 URS000057545F_562 26037619 0030533 0006412 562 cgcggggnggagcagcccgguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site and with antibiotic paromomycin.; tRNA-fMet 4wra 3L 85 3.05 RF00005 URS00002D9DE2_562 26037619 0030533 0006412 562 ggugggguucccgagcggccaaagggagcagacuguanaucugccgucaucgacuucgaagguucgaauccuucccccaccacca <<<<<<<..<<<...........>>>.<<<<<.......>>>>>.<<<...>>>...<<<<<.......>>>>>>>>>>>>.... (((((.(..(((.....[.....))).((((.........)))).((.....))...(((((..]....))))).)))))).... Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site and with antibiotic paromomycin.; tRNA-Tyr 4wro 1L 76 3.05 RF00005 URS00005AA258_83333 26037619 0030533 0006412 83333 gcccgganagcucagncggnagagcaggggauugaanauccccgunuccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... .((((((..(((..........))).((((.........)))).....((.((.......)).))))))))..... Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site; tRNA-Phe 4wro 2L 77 3.05 RF00005 URS000057545F_83333 26037619 0030533 0006412 83333 cgcggggnggagcagcccggnagcucgucgggnucauaacccgaagnucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site; tRNA-fMet 4wro 3L 76 3.05 RF00005 URS00005AA258_83333 26037619 0030533 0006412 83333 gcccgganagcucagncggnagagcaggggauugaanauccccgunuccuugguucgauuccgaguccgggcacca .<<<<....<<<<........>>>>.<<<<<<.....>>>>>>.....<<<...........>>>..>>>>..... ..(..(...((((........)))).((((.........)))).....(((((.......))))).)..)...... Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site; tRNA-Phe 4wro 1K 74 3.05 RF00005 URS00005AA258_83333 26037619 0030533 0006412 83333 gcccgganagcucagncggagagcaggggauugaanauccccgnuccuugguucgauuccgaguccgggcacca <<<<<<...<<<<.......>>>>.<<<<<<.....>>>>>>.....<<<<.......>>>.>.>>>>>>.... ((.(((...((...........)).((((.........))))....(.(((.......))).).))).)).... Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site; tRNA-Phe 4wro 2K 77 3.05 RF00005 URS000057545F_83333 26037619 0030533 0006412 83333 cgcggggnggagcagcccggnagcucgucgggnucauaacccgaagnucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site; tRNA-fMet 4wro 3K 76 3.05 RF00005 URS00005AA258_83333 26037619 0030533 0006412 83333 gcccgganagcucagncggnagagcaggggauugaanauccccgunuccuugguucgauuccgaguccgggcacca <<.<<<<....<<........>>...<<<<<<<...>>>>>>>.....<<<<<.......>>>>>>>>.>>>.... ..(..((...(((........)))..((((.........))))......((((.......)))).))...)..... Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site; tRNA-Phe 4wsd 1K 76 2.95 RF00005 URS00005AA258_83333 26037619 0030533 0006412 83333 gcccgganagcucagucgguagagcaggggauugaanauccccguguccuuggnucgauuccgaguccgggcacca <<<<<<...<<<..........>>>.<<<<<<.....>>>>>>......<<<<.......>>>>..>>>>>>.... (((((((..((............)).((((.........)))).......(((.......)))..))))))).... Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.; tRNA-Phe 4wsd 2K 77 2.95 RF00005 URS000057545F_83333 26037619 0030533 0006412 83333 cgcggggnggagcagcccgguagcucgucgggnucauaacccgaagnucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.; tRNA-fMet 4wsd 3K 75 2.95 RF00005 URS00005AA258_83333 26037619 0030533 0006412 83333 gcccggauagcucagucgguagagcaggggauuaanauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (.(((((..((((........)))).((((........)))).....(((((.......)))))))))).).... Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.; tRNA-Phe 4wsd 1L 76 2.95 RF00005 URS00005AA258_83333 26037619 0030533 0006412 83333 gcccggauagcucagucgguagagcaggggauugaanauccccguguccuuggnucgauuccgaguccgggcacca <<<<<<...<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>.>>>>>>.... (((.(((..(((..........))).((((.........)))).....(((((.......)))))))).))).... Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.; tRNA-Phe 4wsd 2L 77 2.95 RF00005 URS000057545F_83333 26037619 0030533 0006412 83333 cgcggggnggagcagcccgguagcucgucgggnucauaacccgaagnucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.; tRNA-fMet 4wsd 3L 76 2.95 RF00005 URS00005AA258_83333 26037619 0030533 0006412 83333 gcccgganagcucagucgguagagcaggggauugaaaauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((.(((..((((........))))..((((.......))))......(((((.......)))))))).))).... Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.; tRNA-Phe 4wsm 1K 87 3.3 RF00005 URS00004630EA_83333 26037619 0030533 0006412 83333 gccgaggugguggaauugguagacacgcuaccuugagnugguagugcccaauagggcuuacgggnucaagucccguccucgguacca <<<<<<<..<<.............>><<<<<<.......>>>>>><<<<....>>>>..<<<<<.......>>>>>>>>>>>>.... (((((((...(.............)..(((((.......))))).((........))..(((((.......)))))))))))).... Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites; tRNA-Leu 4wsm 2K 79 3.3 RF00005 URS00004630EA_83333 26037619 0030533 0006412 83333 gccgaggugguggaaunnguagacacgcuaccuugagnugguagugcgcuuacgggnucaagucccguccucgguacca <<<<<<<..<<<...........>>><<<<<<.......>>>>>>......<<<<<.......>>>>>>>>>>>>.... .((((((..(((.....[.....))).(((((.......))))).......(((((..]....)))))))))))..... Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites; tRNA-Leu 4wsm 3K 77 3.3 RF00005 URS00004630EA_83333 26037619 0030533 0006412 83333 gccgaggugguggaauugguagacacgcuaccuugaggugguagugcuuacggguucaagucccguccucgguacca <<<<<<<..<<.............>>.<<<<<.......>>>>>......<<<<.......>>>>.>>>>>>>.... (((((((....(.....[.....)...(((((.......))))).....((.((..]....)).))))))))).... Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites; tRNA-Leu 4wsm 1L 87 3.3 RF00005 URS00004630EA_83333 26037619 0030533 0006412 83333 gccgaggugguggaauugguagacacgcuaccuugagnugguagugcccaauagggcuuacgggnucaagucccguccucgguacca <<<<<<<..<<<...........>>><<<<<<.......>>>>>><<<......>>>..<<<<<.......>>>>>>>>>>>>.... (((((.(..(((...........))).(((((.......)))))....(....).....(((((.......)))))).))))).... Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites; tRNA-Leu 4wsm 2L 80 3.3 RF00005 URS00004630EA_83333 26037619 0030533 0006412 83333 gccgaggugguggaaunnguagacacgcuaccuugagnugguagugccgcuuacgggnucaagucccguccucgguacca <<<<<<<..<<<...........>>><<<<<<.......>>>>>>.......<<<<<.......>>>>>>>>>>>>.... .((((((..(((.....[.....))).(((((.......)))))........(((((..]....)))))))))))..... Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites; tRNA-Leu 4wsm 3L 75 3.3 RF00005 URS00004630EA_83333 26037619 0030533 0006412 83333 gccgaggugguggaauuggugacacgcuaccuugaggugguagucuuacggguucaagucccguccucgguacca <<<<<<<..<<<..........>>>.<<<<<.......>>>>>....<<<<<.......>>>>>>>>>>>>.... (((((((..(.(..........).)..(((.........))).....(((((.......)))))))))))).... Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites; tRNA-Leu 4wt1 1K 76 3.05 RF00005 URS00005AA258_83333 26037619 0030533 0006412 83333 gcccgganagcucagucgguagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<...<<<..........>>>.<<<<<<.....>>>>>>......<<<<.......>>>.>.>>>>>>.... ((((((...((............)).((((.........)))).....(((((.......))))).)))))).... Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site; tRNA-Phe 4wt1 2K 77 3.05 RF00005 URS000057545F_83333 26037619 0030533 0006412 83333 cgcggggnggagcagcccgguagcucgucgggnucauaacccgaagnucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site; tRNA-fMet 4wt1 3K 76 3.05 RF00005 URS00005AA258_83333 26037619 0030533 0006412 83333 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca .<<<<<...<<<<........>>>>.<<<<<<.....>>>>>>......<<<<.......>>>>..>>>>>..... ....(.(..((((........)))).((((.........))))......(.((.......)).).).)........ Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site; tRNA-Phe 4wt1 1L 76 3.05 RF00005 URS00005AA258_83333 26037619 0030533 0006412 83333 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<.<<...<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>.>>.>>>.... .((.(((..(((..........))).(((((.......))))).....(((((.......)))))))).))..... Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site; tRNA-Phe 4wt1 2L 77 3.05 RF00005 URS000057545F_83333 26037619 0030533 0006412 83333 cgcggggnggagcagcccgguagcucgucgggnucauaacccgaagnucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site; tRNA-fMet 4wt1 3L 76 3.05 RF00005 URS00005AA258_83333 26037619 0030533 0006412 83333 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca ..<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<.........>>>>>>>>>...... ..((.((..((((........)))).(((((.......))))).....(((((.......))))))).))...... Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site; tRNA-Phe 4wt8 C2 75 3.4 RF00005 URS00005AA258_300852 25562208 0030533 0006412 300852 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacc <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>... (.(((((....................((((.......))))......(((((.......))))))))).))... Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex; A site tNA, E site tNA 4wt8 C3 76 3.4 RF00005 URS00005AA258_300852 25562208 0030533 0006412 300852 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((....((((........)))).((((.........)))).....(.((.........)).)..))))).... Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex; A site tNA, E site tNA 4wt8 C4 77 3.4 RF00005 URS000041AF00_300852 25562208 0030533 0006412 300852 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .(.((((..((((......[..)))).(((((.......))))).....(((((..]....))))))))).)..... Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex; P site trNA 4wt8 D3 76 3.4 RF00005 URS00005AA258_300852 25562208 0030533 0006412 300852 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).((((.........)))).......(((..]....)))..))))))).... Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex; A site tNA, E site tNA 4wt8 D4 76 3.4 RF00005 URS00002905B5_308052 25562208 0030533 0006412 308052 gcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... (((((...((((......[..)))).(((((.......))))).....(((((..]....))))).)))))..... Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex; tRNA (76-MER) 4wt8 DV 55 3.4 RF00005 URS000080DF95_308052 25562208 0030533 0006412 308052 gcccggauagcucagucgguagagcaggggauugaaaauuccgaguccgggcacc <<<<<<<..<<<<........>>>>....................>>>>>>>... ...((((..((............))....................))))...... Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex; DNA (55-MER) 4wu1 2K 82 3.2 RF00005 URS00002D9DE2_562 26037619 0030533 0006412 562 gguggggnucccgagngccaaagggagcagacunuanaucugccgucagacuucgaaggnucgaauccuucccccaccacca <<<<<<<..<<<..........>>>.<<<<<.......>>>>>.<<...>>...<<<<<.......>>>>>>>>>>>>.... (((((((..(((....[.....))).((((.........))))...(.).....(((((..]....)))))))))))).... Complex of 70S ribosome with tRNA-Tyr and mRNA with G-U mismatch in the second position in the P-site; tRNA-Tyr 4wu1 3K 85 3.2 RF00005 URS00002D9DE2_562 26037619 0030533 0006412 562 gguggggnucccgagcngccaaagggagcagacunuanaucugccgucaucgacuucgaaggnucgaauccuucccccaccacca <<<<<<<..<<<...........>>>.<<<<<.......>>>>>.<<<...>>>...<<<<<.......>>>>>>>>>>>>.... (((((((...((.....[..[..))..((((.........)))).(((...)))]..(((((..]....)))))))))))).... Complex of 70S ribosome with tRNA-Tyr and mRNA with G-U mismatch in the second position in the P-site; tRNA-Tyr 4wu1 2L 78 3.2 RF00005 URS00002D9DE2_562 26037619 0030533 0006412 562 gguggggnucccgagngccaaagggagcagacunuanaucugccgucuucgaaggnucgaauccuucccccaccacca <<<<<<<..<<<..........>>>.<<<<<.......>>>>>.......<<<<<.......>>>>>>>>>>>>.... (((((((...(.....[......)..((((.........)))).......(((((..]....)))))))))))).... Complex of 70S ribosome with tRNA-Tyr and mRNA with G-U mismatch in the second position in the P-site; tRNA-Tyr 4wu1 3L 85 3.2 RF00005 URS00002D9DE2_562 26037619 0030533 0006412 562 gguggggnucccgagcngccaaagggagcagacunuanaucugccgucaucgacuucgaaggnucgaauccuucccccaccacca <<<<<<<..<<<...........>>>.<<<<<.......>>>>>.<<<...>>>...<<<<<.......>>>>>>>>>>>>.... (((((((..(((...........))).((((.........)))).............(((((.......)))))))))))).... Complex of 70S ribosome with tRNA-Tyr and mRNA with G-U mismatch in the second position in the P-site; tRNA-Tyr 4wzd 2K 82 3.1 RF00005 URS00002D9DE2_562 26037619 0030533 0006412 562 gguggggnucccgagngccaaagggagcagacunuanaucugccgucagacuucgaaggnucgaauccuucccccaccacca <<<<<<<..<<<..........>>>.<<<<<.......>>>>>.<<...>>...<<<<<.......>>>>>>>>>>>>.... .((((((..(((....[.....))).((((.........)))).(.(.).)...(((((..]....)))))))))))..... Complex of 70S ribosome with cognate tRNA-Tyr in the P-site; tRNA-Tyr 4wzd 3K 85 3.1 RF00005 URS00002D9DE2_562 26037619 0030533 0006412 562 gguggggnucccgagcngccaaagggagcagacunuanaucugccgucaucgacuucgaaggnucgaauccuucccccaccacca <<<<<<<..<<<...........>>>.<<<<<.......>>>>>.<<<...>>>...<<<<<.......>>>>>>>>>>>>.... (((((((..(((.....[..[..))).((((.........)))).(((...)))]..(((((..]....)))))))))))).... Complex of 70S ribosome with cognate tRNA-Tyr in the P-site; tRNA-Tyr 4wzd 2L 78 3.1 RF00005 URS00002D9DE2_562 26037619 0030533 0006412 562 gguggggnucccgagngccaaagggagcagacunuanaucugccgucuucgaaggnucgaauccuucccccaccacca <<<<<<<..<<<..........>>>.<<<<<.......>>>>>.......<<<<<.......>>>>>>>>>>>>.... (((((((...(.....[......)..((((.........)))).......(((((..]....)))))))))))).... Complex of 70S ribosome with cognate tRNA-Tyr in the P-site; tRNA-Tyr 4wzd 3L 85 3.1 RF00005 URS00002D9DE2_562 26037619 0030533 0006412 562 gguggggnucccgagcngccaaagggagcagacunuanaucugccgucaucgacuucgaaggnucgaauccuucccccaccacca <<<<<<<..<<<...........>>>.<<<<<.......>>>>>.<<<...>>>...<<<<<.......>>>>>>>>>>>>.... (((((((..(((...........))).((((.........)))).((.....))...(((((.......)))))))))))).... Complex of 70S ribosome with cognate tRNA-Tyr in the P-site; tRNA-Tyr 4wzo 1K 70 3.3 RF00005 URS000057545F_83333 26037619 0030533 0006412 83333 cgcgggguggagcaggagcucgucgggnucauaacccgaaggucgucggnuaaauccggcccccgcaacc .<<<<<<..<<<<....>>>>.<<<<<.......>>>>>......<<<<......>>>>.>>>>>>.... .((((....(((......))).(((((.......))))).....(((.(......).)))..)))).... Complex of 70S ribosome with tRNA-fMet and mRNA; tRNA-fMet 4wzo 2K 77 3.3 RF00005 URS000057545F_83333 26037619 0030533 0006412 83333 cgcggggnggagcagcccgguagcucgucgggnucauaacccgaagnucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Complex of 70S ribosome with tRNA-fMet and mRNA; tRNA-fMet 4wzo 3K 76 3.3 RF00005 URS00005AA258_83333 26037619 0030533 0006412 83333 gcccgganagcucagucgguagagcaggggauugaanauccccgunuccuugguucgauuccgaguccgggcacca <<<<<<<...<<<........>>>..<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... ..(..((...(((........)))..((((.........))))......((((.......)))).))..)...... Complex of 70S ribosome with tRNA-fMet and mRNA; tRNA-Phe 4wzo 2L 77 3.3 RF00005 URS000057545F_83333 26037619 0030533 0006412 83333 cgcggggnggagcagcccgguagcucgucgggnucauaacccgaagnucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Complex of 70S ribosome with tRNA-fMet and mRNA; tRNA-fMet 4wzo 3L 76 3.3 RF00005 URS00005AA258_83333 26037619 0030533 0006412 83333 gcccgganagcucagucgguagagcaggggauugaanauccccgunuccuugguucgauuccgaguccgggcacca ..<<.....<<<<........>>>>.<<<<<<.....>>>>>>.....<<<...........>>>...>>...... ..(..(...((((........)))).((((.........)))).....(.(((.......)).)).)..)...... Complex of 70S ribosome with tRNA-fMet and mRNA; tRNA-Phe 4x0a B 73 3.505 RF00005 URS00008116B4_243274 25914059 0030533 0006412 243274 ggcagguagcucaguugguagagcacuggacugaaaauccaggugucggcgguucgauuccgccccugccacc .<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>.>... (((.((..((((.....[..)))).((((.........)))).....(((((..]....))))))).)))... Structure of tRNA-processing enzyme complex 6; RNA (73-MER) 4x0b B 77 3.2 RF00005 URS00008116B5_243274 25914059 0030533 0006412 243274 gggccagguagcucaguugguagagcacuggacugaaaauccaggugucggcgguucgauuccgccccuggcccacc <<<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>>... .((((.((..((((........))))...((.........)).......(((((.......))))))).)))).... Structure of tRNA-processing enzyme complex 7; RNA (77-MER) 4xco M 96 2.9 RF00169 URS000080DDBC_2190 26051119,21336278 0006617 0048501 2190 ggcggugggggagcaucuccuguaggggagauguaacccccuuuaccugccgaaccccgccaggcccggaagggagcaacgguaggcaggacgucg <<<<..<<<<<.<<<<<<<<<....>>>>>>>>>..>>>>>....<<<<<<.....<<<...<.<<<....>>>..>..>>>..>>>>>>.>>>>. ((((..(((((.(((((((((....)))))))))..)))))....((((((.....(((.....(((....))).....)))..)))))).)))). Signal-sequence induced conformational changes in the signal recognition particle; RNA 4xco E 96 2.9 RF00169 URS000080DDBC_2190 26051119,21336278 0006617 0048501 2190 ggcggugggggagcaucuccuguaggggagauguaacccccuuuaccugccgaaccccgccaggcccggaagggagcaacgguaggcaggacgucg <<<<..<<<<<.<<<<<<<<<....>>>>>>>>>..>>>>>....<<<<<<.....<<<...<.<<<....>>>..>..>>>..>>>>>>.>>>>. ((((..(((((.(((((((((....)))))))))..)))))....((((((.....(((.....(((....))).....)))..)))))).)))). Signal-sequence induced conformational changes in the signal recognition particle; RNA 4xnr X 71 2.21 RF00167 URS000080E2A9_672 25938715 0009113 672 gggaagauauaauccuaaugauaugguuugggaguuucuaccaagagccuuaaacucuugauuaucuuccc <<<<<<<<<...<<<<<<......<<.>>>>>>........<<<<<<>>.....>>>>>>..>>>>>>>>> ((((((((((..((((((......[[.))))))[.....)]((((((]].....))))))..))))))))) Vibrio Vulnificus Adenine Riboswitch Aptamer Domain, Synthesized by Position-selective Labeling of RNA (PLOR), in Complex with Adenine; Vibrio Vulnificus Adenine Riboswitch 4xw7 A 64 2.5 RF01750 URS0000868555_1660 26144884 0006730,1900371 1660 gggucgugacuggcgaacaggugggaaaccaccggggagcgacccuugccgcccgccugggcaa <<<<<<<...<........<<<<<....>>>>>.>...>>>>>>><<<<<.........>>>>> (((((((..((........(((((....))))).))..)))))))(((((.........))))) Crystal structure of the ZMP riboswitch at 2.50 angstrom; pfl RNA 4xwf A 64 1.8 RF01750 URS0000868555_1660 26144884 0006730,1900371 1660 gggucgugacuggcgaacaggugggaaaccaccggggagcgacccuugccgcccgccugggcaa <<<<<<<...<........<<<<<....>>>>>.>...>>>>>>><<<<<.........>>>>> (((((((..((........(((((....))))).))..)))))))(((((.........))))) Crystal structure of the ZMP riboswitch at 1.80 angstrom; pfl RNA 4y1n A 249 3.0 RF02001 URS0000868528_221109 26502156 0000373 221109 cccggcaugggugcagucuauagggugagagucccgaacugugaaggcagaaguaacaguuagccuaacgcaaggguguccguggaaacauggaaucugaagcggacggcaaaccuucggucugaggaauucauaugaggcuagguaucaauggaugaguuugcauaacaaaacaaaguccuuucugccaaaguugguacagaguaaaugaagcagauugaagggaaagacugcauucuuccggggauc <<<<<...<<<<<<<<<<<...<<<.......>>>..<<<<<...(((((((...>>>>>..<<<...<<<....<<.<<<<<<....>>>>>>>>.....>>>...>>>...<<<<<<<<<<<.....<<<<......<<<..<<<<<<<<<<<<..<<<<........>>>>...>>>>.)))))))...>>>>>>>>..>>>...>>>>.>>>>>>>>>>>...>>>>>>>>>>>..>>>>>.... .(((({..(((((((((((...(((.......)))..(((((...[[[[[[[...)))))..(((...(((..((...((((((....)))))).)).}..)))...)))...(((((((((((.....((((......(((..((((((((((((..((((........))))...)))).]]]]]]]...))))))))..)))...)))).)))))))))))...)))))))))))..))))..... Oceanobacillus iheyensis group II intron domain 1 with iridium hexamine; group II intron, domain 1 4y1n B 259 3.0 RF02001 URS0000868528_221109 26502156 0000373 221109 uuaucccggcaugggugcagucuauagggugagagucccgaacugugaaggcagaaguaacaguuagccuaacgcaaggguuccguggaaacauggaaucugaagcggacggcaaaccuucggucugaggaacacgaacuucauaugaggcuagguaucaauggaugaguuugcauaacaaaacaaaguccuuucugccaaguugguacagaguaaaugaagcagauuugaagggaaagacugcauucuuacggggauc [[[.<<<<....<<<<<<<<<<<...<<<.......>>>..<<<<<...(((((((...>>>>>..<<<...<<<..<<<<<<<<<<....>>>>>>>>>>...>>>...>>>...<<<<<<<<<<<...........<<<<<......<<<..<<<<<<<<<<<<..<<<<...]]]..>>>>...>>>>.)))))))..>>>>>>>>..>>>...>>>>>>>>>>.>>>>>>...>>>>>>>>>>>...>>>>.... {{{{((((.{..(((((((((((...(((.......)))..(((((...[[[[[[[...)))))..(((...(((..((((((((((....))))))))))}..)))...)))...(((((((((((...........(((((.....[(((..((((((((((((..((((.]}}}}..))))...)))).]]]]]]]..))))))))..)))...)))))))))).))))))...)))))))))))...)))).... Oceanobacillus iheyensis group II intron domain 1 with iridium hexamine; group II intron, domain 1 4y1o A 258 2.95 RF02001 URS0000868528_221109 26502156 0000373 221109 uuaucccggcaugggugcagucuauagggugagagucccgaacugugaaggcagaaguaacaguuagccuaacgcaaggguuccguggaaacauggaaucgaagcggacggcaaaccuucggucugaggaacacgaacuucauaugaggcuagguaucaauggaugaguuugcauaacaaaacaaaguccuuucugccaguugguacagaguaaaugaagcagauugaagggaaagacugcauucuuacccggggauc [[[.<<<<<...<<<<<<<<<<<...<<<.......>>>..<<<<<...(((((((...>>>>>..<<<...<<<...<<<<<<<<<....>>>>>>>>>...>>>...>>>...<<<<<<<<<<<...........<<<<<......<<<..<<<<<<<<<<<<..<<<<...]]]..>>>>...>>>>.))))))).>>>>>>>>..>>>...>>>>>>>>>>>>>>>>...>>>>>>>>>>>....>>>>>.... {{{{((((({..((.((((((((...(((.......)))..(((((...[[[[[[[...)))))..(((...(((...(((((((((....)))))))))}..)))...)))...(((((.(((((.(.....)...(((((.....[((...((((((((((((..((((.]}}}}..))))...)))).]]]]]]].))))))))...))...)))))))))).)))))...)))))))).))....))))).... Oceanobacillus iheyensis group II intron domain 1; group II intron, domain 1 4y1o B 256 2.95 RF02001 URS0000868528_221109 26502156 0000373 221109 guuacccggcaugggugcagucuauagggugagagucccgaacugugaaggcagaaguaacaguuagccuaacgcaaggguguccguggaaacauggaagaagcggacggcaaaccuucggucugaggaaacgaacuucauagaggcuagguaucaauggaugaguuugcauaacaaaacaaaguccuuucugccaaaguugguacagaguaaaugaagcagauugaagggaaagacugcauucuuaccggggauc [[[[<<<<<...<<<<<<<<<<<...<<<.......>>>..<<<<<...(((((((...>>>>>..<<<...<<<.......<<<<<<....>>>>>>....>>>...>>>...<<<<<<<<<<<..........<<<<<.....<<<..<<<<<<<<<<<<..<<<<...]]]].>>>>...>>>>.)))))))...>>>>>>>>..>>>...>>>>>>>>>>>>>>>>...>>>>>>>>>>>...>>>>>.... {{{{.(((({..(((((((((((...(((.......)))..(((((...[[[[[[[...)))))..(((...(((.....(..(((((....)))))).}..)))...)))...(((((((((((.(....)...(((((.....(((..((((((((((((..((((...}}}}.))))...)))).]]]]]]]...))))))))..)))...))))))))))))))))...)))))))))))...))))..... Oceanobacillus iheyensis group II intron domain 1; group II intron, domain 1 4y4p 1w 74 2.5 RF00005 URS00005AA258_562 25775268 0030533 0006412 562 gcccgganagcucaggguagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<......>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((...[..)))).((((.........)))).....(((((..]....)))))))))))).... Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution; A-site and E-site tRNAs 4y4p 1x 76 2.5 RF00005 URS000041AF00_562 25775268 0030533 0006412 562 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution; P-site tRNA 4y4p 1y 74 2.5 RF00005 URS00005AA258_562 25775268 0030533 0006412 562 gcccgganagcucaggguagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<......>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((......)))).((((.........)))).....(((((.......)))))))))))).... Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution; A-site and E-site tRNAs 4y4p 2w 72 2.5 RF00005 URS00005AA258_562 25775268 0030533 0006412 562 cccgganagcucagggagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<..<<<<.....>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((...[.)))).((((.........))))......((((..]....)))).))))))..... Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution; A-site and E-site tRNAs 4y4p 2x 76 2.5 RF00005 URS000041AF00_562 25775268 0030533 0006412 562 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution; P-site tRNA 4y4p 2y 73 2.5 RF00005 URS00005AA258_562 25775268 0030533 0006412 562 gcccgganagcucagggagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<.....>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((...[.)))).((((.........)))).....(((((..]....)))))))))))).... Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution; A-site and E-site tRNAs 4yco D 74 2.1 RF00005 URS000080E264_83333 25902496 0030533 0006412 83333 gcgcggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgcgcac <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.. (((((((..((((.....[..)))).(((((.......))))).....(((((..]....)))))))))))).. E. coli dihydrouridine synthase C (DusC) in complex with tRNAPhe; tRNAphe 4yco E 67 2.1 RF00005 URS000080E264_83333 25902496 0030533 0006412 83333 gcggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccg .<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>> ..(((..((((.....[..)))).(((((.......))))).....(((((..]....)))))))). E. coli dihydrouridine synthase C (DusC) in complex with tRNAPhe; tRNAphe 4yco F 71 2.1 RF00005 URS000080E264_83333 25902496 0030533 0006412 83333 gcgcggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgcg .<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>> ..(((((..((((.....[..)))).((((.........)))).....(((((..]....)))))))))). E. coli dihydrouridine synthase C (DusC) in complex with tRNAPhe; tRNAphe 4ycp B 62 2.55 RF00005 URS00003A6DC6_83333 25902496 0030533 0006412 83333 gcguaguucaauugguagagcaccggucaaaaccggguguugggaguucgagucucuccgcc <<<..<<<<........>>>>.<<<<<....>>>>>.....<<<<<.......>>>>>>>>. (((..((((.....[..)))).(((((....))))).....(((((..]....)))))))). E. coli dihydrouridine synthase C (DusC) in complex with tRNATrp; tRNATrp 4ypb QV 77 3.4 RF00005 URS000041AF00_562 26508639 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon; tRNA fMet 4ypb QW 77 3.4 RF00005 URS000041AF00_562 26508639 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((.........)))).(((((.......))))).....(.(((.......))).)))))))..... Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon; tRNA fMet 4ypb XV 77 3.4 RF00005 URS000041AF00_562 26508639 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon; tRNA fMet 4ypb XW 77 3.4 RF00005 URS000041AF00_562 26508639 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))..... Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon; tRNA fMet 4yvi C 71 3.01 RF00005 URS000002EA11_243274 26183229 0030533 0006412 243274 ugggaggucgucuaacgguaggacggcggacucuggauccgcugguggagguucgaguccuccccucccag .<<<<<<..<<<<.......>>>><<<<<<.......>>>>>>...<<<<<.......>>>>>>>>>>>.. .((((((..((((....[..))))((((((.......))))))...(((((..]....))))))))))).. Crystal Structure of H. influenzae TrmD in complex with sinefungin and tRNA; tRNA 4yvj C 71 2.9 RF00005 URS0000868512_243274 26183229 0030533 0006412 243274 ugggaggucgucuaacgguaggacggcggacucuugauccgcugguggagguucgaguccuccccucccag .<<<<<<..<<<<.......>>>><<<<<<.......>>>>>>...<<<<<.......>>>>>>>>>>>.. .((((((..((((....[..))))((((((.......))))))...(((((..]....))))))))))).. Crystal Structure of H. influenzae TrmD in complex with sinefungin and tRNA variant (G36U); tRNA 4yvk C 71 3.002 RF00005 URS0000868537_243274 26183229 0030533 0006412 243274 ugggaggucgucuaacgguaggacggcggacucucgauccgcugguggagguucgaguccuccccucccag .<<<<<<..<<<<.......>>>><<<<<<.......>>>>>>...<<<<<.......>>>>>>>>>>>.. .((((((..((((....[..))))((((((.......))))))...(((((..]....))))))))))).. Crystal Structure of H. influenzae TrmD in complex with sinefungin and tRNA variant (G36C); tRNA 4yye C 74 2.301 RF00005 URS00008FED3E_4932 26704982 0030533 0006412 4932 guuauauuagcuuaauugguagagcauucguuuuguaaucgaaagguuugggguucaaaucccuaauauaacac <<<<<<<..<<<<........>>>>.<<<<.........>>>>.....<<<<<.......>>>>>>>>>>>>.. (((((((..((((.....[..)))).((((.........)))).....(((((..]....)))))))))))).. Crystal structure of the yeast mitochondrial threonyl-tRNA synthetase (MST1) in complex with the canonical tRNAThr and threonyl sulfamoyl adenylate; tRNA 4yye D 74 2.301 RF00005 URS00008FED3E_4932 26704982 0030533 0006412 4932 guuauauuagcuuaauugguagagcauucguuuuguaaucgaaagguuugggguucaaaucccuaauauaacac <<<<<<<..<<<<........>>>>.<<<<.........>>>>.....<<<<<.......>>>>>>>>>>>>.. (((((((..((((.....[..)))).((((.........)))).....(((((..]....)))))))))))).. Crystal structure of the yeast mitochondrial threonyl-tRNA synthetase (MST1) in complex with the canonical tRNAThr and threonyl sulfamoyl adenylate; tRNA 4yzv QV 77 3.1 RF00005 URS000041AF00_562 26508639 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Precleavage 70S structure of the P. vulgaris HigB deltaH92 toxin bound to the ACA codon; P-site tRNA-fMet 4yzv XV 77 3.1 RF00005 URS000041AF00_562 26508639 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Precleavage 70S structure of the P. vulgaris HigB deltaH92 toxin bound to the ACA codon; P-site tRNA-fMet 4z3s 1w 74 2.65 RF00005 URS00005AA258_562 26028538 0030533 0006412 562 gcccgganagcucaggguagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<......>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((...[..)))).((((.........)))).....(((((..]....)))))))))))).... Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolution; A/E-site tRNAs 4z3s 1x 76 2.65 RF00005 URS000041AF00_562 26028538 0030533 0006412 562 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolution; P-site tRNA 4z3s 1y 74 2.65 RF00005 URS00005AA258_562 26028538 0030533 0006412 562 gcccgganagcucaggguagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<......>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((......)))).((((.........)))).....((.((.......)).))))))))).... Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolution; A/E-site tRNAs 4z3s 2w 73 2.65 RF00005 URS00005AA258_562 26028538 0030533 0006412 562 gcccgganagcucagggagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<.....>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... .((((((..((((...[.)))).((((.........)))).....(((((..]....)))))))))))..... Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolution; A/E-site tRNAs 4z3s 2x 76 2.65 RF00005 URS000041AF00_562 26028538 0030533 0006412 562 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolution; P-site tRNA 4z3s 2y 73 2.65 RF00005 URS00005AA258_562 26028538 0030533 0006412 562 gcccgganagcucagggagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<.....>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((...[.)))).((((.........)))).....(((((..]....)))))))))))).... Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolution; A/E-site tRNAs 4z8c 1x 76 2.9 RF00005 URS000041AF00_562 25984972 0030533 0006412 562 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocin; Initiator Methionine tRNA 4z8c 2x 76 2.9 RF00005 URS000041AF00_562 25984972 0030533 0006412 562 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocin; Initiator Methionine tRNA 4zdo E 75 2.65 RF01852,RF00005 URS00001DA281_9606 27576344 0030533 0006412 9606 gcccggaugauccucaguggucuggggugcagaccuguugucucgacagagugguucaauuccaccuuucgggcg <<<<<<<....<<<<<<....>>>>>>.<<<....>>><<<<..>>>>..<<<<.......>>>>..>>>>>>>. (((((((.(..((((((..[.)))))).((((..))))((((..))))..((((..]....))))).))))))). The crystal structure of T325S mutant of human SepSecS in complex with selenocysteine tRNA (tRNASec); selenocysteine tRNA 4zdp E 74 2.703 RF01852,RF00005 URS00001DA281_9606 27576344 0030533 0006412 9606 gcccggaugaucaguggucuggggugcaggaccuguaugucucgacagagugguucaauuccaccuuucgggcg <<<<<<<....<<<....>>>...<<<<<<.>>>>>><<<<..>>>>..<<<<.......>>>>..>>>>>>>. (((((((.(..(((..[.)))...((((((.))))))((((..))))..((((..]....))))).))))))). The crystal structure of Y334C mutant of human SepSecS in complex with selenocysteine tRNA (tRNASec); selenocysteine tRNA 4zer 1x 76 3.1 RF00005 URS00002905B5_83333 25984971 0030533 0006412 83333 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the Onc112 antimicrobial peptide bound to the Thermus thermophilus 70S ribosome; tRNA met 4zer 2x 76 3.1 RF00005 URS00002905B5_83333 25984971 0030533 0006412 83333 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the Onc112 antimicrobial peptide bound to the Thermus thermophilus 70S ribosome; tRNA met 4znp A 73 2.94 RF01750 URS0000868534_32630 26118534 0006730,1900371 32630 gggauacaggacuggcggauuagugggaaaccacguggacuguauccgaaaaaaagccgaccgccugggcauc .<<<<<<<<..<.(((((....<<<<....>>>>..>..>>>>>>>>........<<<..)))))..>>>... .((((((((..(.[[[[[....((((....))))..)..))))))))........(((..]]]]]..)))... The structure of A pfI Riboswitch Bound to ZMP; pfI Riboswitch 4znp B 66 2.94 RF01750 URS0000868534_32630 26118534 0006730,1900371 32630 gggauacaggacuggcggauuagugggaaaccacguggacuguauccggccgaccgccugggcauc .[[.[.(((..(.<<<<<....<<<<....>>>>..)..))).].]].(((..>>>>>..)))... ...((.(((..(.[[[[[....((((....))))..)..))).))...(((..]]]]]..)))... The structure of A pfI Riboswitch Bound to ZMP; pfI Riboswitch 4zsn QV 77 3.6 RF00005 URS000041AF00_562 27378776 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... 70S-wild-type HigB toxin complex bound to a AAA lysine codon; P-site tRNA-fMet 4zsn XV 77 3.6 RF00005 URS000041AF00_562 27378776 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... 70S-wild-type HigB toxin complex bound to a AAA lysine codon; P-site tRNA-fMet 5aa0 BC 76 5.0 RF00005 URS00005AA258_300852 26283392 0030533 0006412 300852 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((........)))).((((.........)))).....((.((.......)).))))))))).... Complex of Thermous thermophilus ribosome (A-and P-site tRNA) bound to BipA-GDPCP; tRNA chain 1 5aa0 BD 75 5.0 RF00005 URS000031D44F_300852 26283392 0030533 0006412 300852 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacc .....<...<<<<........>>>>.<<<<<<.....>>>>>>........<<.......>>...>......... .........((............))..((((.......))))......(..((.......))..).......... Complex of Thermous thermophilus ribosome (A-and P-site tRNA) bound to BipA-GDPCP; tRNA chain 2 5aa0 BE 75 5.0 RF00005 URS000031D44F_300852 26283392 0030533 0006412 300852 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacc .........<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>.......... .........((((........)))).(((((.......))))).....(((((.......))))).......... Complex of Thermous thermophilus ribosome (A-and P-site tRNA) bound to BipA-GDPCP; tRNA chain 2 5afi v 77 2.9 RF00005 URS00001BBAFC_562 25707802 0030533 0006412 562 cgcggggnggagcagccuggnagcucgucgggcucauaacccgaagaucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... 2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM; P-site fMet-tRNAfMet 5afi w 77 2.9 RF00005 URS00001BBAFC_562 25707802 0030533 0006412 562 cgcggggnggagcagccuggnagcucgucgggcucauaacccgaagaucgucggnucaaauccggcccccgcaacca .<<<<<...<<<<.........>>>>..<<<<.......>>>>......<<<<<.......>>>>>.>>>>>..... ...(((([.((.(.]....[..).))..((((.......))))......(.(((..]....))).)))))....... 2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM; P-site fMet-tRNAfMet 5ah5 C 80 2.1 RF00005 URS00008FED43_358 27713402 0030533 0006412 358 gcccgcauggugaaaucgguaaacacaucgcacaaugcgccgccucuggcuugccgguucaaguccggcugcgggcacca <<<<<<<..<<<...........>>>..<<<<...>>>>..<<<...>>>..<<<<<.......>>>>>>>>>>>>.... (((((((..(((......[....)))..((((...))))..(((...)))..(((((..]....)))))))))))).... Crystal structure of the ternary complex of Agrobacterium radiobacter K84 agnB2 LeuRS-tRNA-LeuAMS; TRNA-LEU TAA ISOACCEPTOR 5ah5 D 81 2.1 RF00005 URS00008FED43_358 27713402 0030533 0006412 358 gcccgcauggugaaaucgguaaacacaucgcacuaaugcgccgccucuggcuugccgguucaaguccggcugcgggcacca <<<<<<<..<<<...........>>>..<<<<....>>>>..<<<...>>>..<<<<<.......>>>>>>>>>>>>.... (((((((..(((......[....)))..((((....))))..(((...)))..(((((..]....)))))))))))).... Crystal structure of the ternary complex of Agrobacterium radiobacter K84 agnB2 LeuRS-tRNA-LeuAMS; TRNA-LEU TAA ISOACCEPTOR 5aj0 Bv 76 3.5 RF00005 URS00005AA258_633 25957688 0030533 0006412 633 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((........)))).(((((.......))))).....((.((.......)).))))))))).... Cryo electron microscopy of actively translating human polysomes (POST state).; tRNA 5aj0 Bw 76 3.5 RF00005 URS00005AA258_633 25957688 0030533 0006412 633 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((........)))).(((((.......))))).....((.((.......)).))))))))).... Cryo electron microscopy of actively translating human polysomes (POST state).; tRNA 5aka 7 74 5.7 RF00169 URS00008116BF_83333 25775537 0006617 0048501 83333 agcgcagcgcggacgcccgaaccuggucagagccggaaggcagcagccauaagggaugcuuugcgggugccguu <<<<...<<<<<<.<<<<......<<<..<.<<<....>>>..>.>>>....>>>.>..>>>>>>.....>>>> (((((..(..(((..(((......(((....(((....)))....)))....)))....)))..)...).)))) EM structure of ribosome-SRP-FtsY complex in closed state; 4.5S ribosomal RNA 5aox C 87 2.04 RF00017 URS00008FED21_32630 26585389 0006617 0005786 32630 ngccgggcgcgguggcucacgccuguaaucccagcacuuugggaggccgaggcgggaggaucgcgaacacgcgagaccccgucucua <<<<<<<<<.<<..((>>.>>>>>....<<<<.)).....>>>>>>>><<<<<<<<.<..<<<<<....>>>>>..>>>>>>>>>.. (((((((((.(..[[[.).)))))....((((.]].]...))))))))((((((((.(..(((((....)))))..))))))))).. Human Alu RNA retrotransposition complex in the ribosome-stalling conformation; ALU JO CONSENSUS RNA 5aox F 87 2.04 RF00017 URS00008FED21_32630 26585389 0006617 0005786 32630 ngccgggcgcgguggcucacgccuguaaucccagcacuuugggaggccgaggcgggaggaucgcgaacacgcgagaccccgucucua <<<<<<<<<.<<..((>>.>>>>>....<<<<.)).....>>>>>>>><<<<<<<<.<..<<<<<....>>>>>..>>>>>>>>>.. (((((((((.(..[[[.).)))))....((((.]].]...))))))))((((((((.(..(((((....)))))..))))))))).. Human Alu RNA retrotransposition complex in the ribosome-stalling conformation; ALU JO CONSENSUS RNA 5axm P 73 2.21 RF00005 URS0000A76335_4932 27051866 0030533 0006412 4932 nggauuuagcucaguugggagagcgccagacugaagaucuggagguccuguguucgauccacagaauccccac <<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>... ((((((..((((.....[..)))).(((((.......))))).....(((((..]....)))))))))))... Crystal structure of Thg1 like protein (TLP) with tRNA(Phe); RNA (75-MER) 5axn P 66 2.703 RF00005 URS0000A76335_4932 27051866 0030533 0006412 4932 nggauuuagcucaguugggagagcgccagaucuggagguccuguguucgauccacagaauccccac <<<<<<..<<<<........>>>>.<<<....>>>.....<<<<<.......>>>>>>>>>>>... ((((((..((((.....[..)))).((......)).....(((((..]....)))))))))))... Crystal structure of Thg1 like protein (TLP) with tRNA(Phe) and GDPNP; RNA (75-MER) 5b2o B 94 1.7 RF02747 URS00008FED26_32630 26875867 0010468 32630 gggaaauuaggugcgcuggggguuucaguugcgccgaaaggcgcucuguaaucauuuaaaaguauuuugaacggaccucuguuugacacgucug .....................<<<.<<<..<<<<<....>>>>>.>>>.>>>...<...>...........<<<<<...<<.....>>.>>>>> .....................(((.(((..(((((....))))).))).)))..(.....)..(...)...(((((...(((...))).))))) Crystal structure of Francisella novicida Cas9 in complex with sgRNA and target DNA (TGG PAM); Guide RNA 5b2p B 94 1.7 RF02747 26875867 0010468 32630 gggaaauuaggugcgcuggggguuucaguugcgccgaaaggcgcucuguaaucauuaaaaaguauuuugaacggaccucuguuugacacgucug .....................<<<.<<<..<<<<<....>>>>>.>>>.>>>...<...>...........<<<<<...<<.....>>.>>>>> .....................(((.(((..(((((....))))).))).)))..(.....)..(...)...(((((...(((...))).))))) Crystal structure of Francisella novicida Cas9 in complex with sgRNA and target DNA (TGA PAM); Guide RNA 5b2q B 94 1.7 RF02747 URS00008FED26_32630 26875867 0010468 32630 gggaaauuaggugcgcuggggguuucaguugcgccgaaaggcgcucuguaaucauuuaaaaguauuuugaacggaccucuguuugacacgucug .....................<<<.<<<..<<<<<....>>>>>.>>>.>>>...<...>...........<<<<<...<<.....>>.>>>>> .....................(((.(((..(((((....))))).))).)))..(.....)..(...)...(((((...(((...))).))))) Crystal structure of Francisella novicida Cas9 RHA in complex with sgRNA and target DNA (TGG PAM); Guide RNA 5b63 B 63 3.0 RF00005 URS0000316653_272567 0030533 0006412 272567 gcgcucguagcucaauuggauagagcaucagaagguuagggguucgaauccucucgagcgcgc <<<<<<<..<<<<.........>>>>...........<<<<<.......>>>>>>>>>>>>.. .((((((..((((.....[...)))).(...).....(((((..]....)))))))))))... Crystal structures of E.coli arginyl-tRNA synthetase (ArgRS) in complex with substrate tRNA(Arg); tRNA-Arg 5b63 D 64 3.0 RF00005 URS0000316653_272567 0030533 0006412 272567 gcgcucguagcucaauuggauagagcauucagaagguuagggguucgaauccucucgagcgcgc <<<<<<<..<<<<.........>>>>............<<<<<.......>>>>>>>>>>>>.. (((((((..((((.....[...)))).(....).....(((((..]....)))))))))))).. Crystal structures of E.coli arginyl-tRNA synthetase (ArgRS) in complex with substrate tRNA(Arg); tRNA-Arg 5btp B 62 2.816 RF01750 URS0000868535_32630 26280533 0006730,1900371 32630 guuauaugacugacggaacguggaauuaaccacaugaaguauaaaugccgaccgucugggcg .<<<<<<..<.(((((...<<<<......>>>>..>..>>>>>>..<<<..)))))..>>>. .(.((((..(.[[[[[...((((......))))..)..)))).)..(((..]]]]]..))). Fusobacterium ulcerans ZTP riboswitch bound to ZMP; RNA (62-MER) 5btp A 62 2.816 RF01750 URS0000868535_32630 26280533 0006730,1900371 32630 guuauaugacugacggaacguggaauuaaccacaugaaguauaacggccgaccgucugggcg <<<<<<<..<.(((((...<<<<......>>>>..>..>>>>>>>.<<<..)))))..>>>. (((((((..(.[[[[[...((((......))))..)..))))))).(((..]]]]]..))). Fusobacterium ulcerans ZTP riboswitch bound to ZMP; RNA (62-MER) 5c7u B 67 3.05 RF00167 URS000080DDA1_224308 26223188 0009113 224308 ggacauauaaucgcguggauauggcacgcaaguuucuaccgggcaccguaaauguccgacuaugucc <<<<<<<...<.<<<<<.....<<>>>>>.>........<<<<<<>>.....>>>>>>..>>>>>>> ((((((((..(.(((((.....[[))))).)[.....)]((((((]].....))))))..))))))) 5'-monophosphate wt Guanine Riboswitch bound to hypoxanthine.; 5'-monophosphate wt guanine riboswitch 5c7w C 67 3.22 RF00167 URS0000868543_32630 26223188 0009113 32630 gganauauaaucgcguggauauggcacgcaaguuucuaccgggcaccguaaauguccgacuaunucc <<<.<<<...<.<<<<<.....<<>>>>>.>........<<<<<<>>.....>>>>>>..>>>.>>> (((.((((..(.(((((.....[[))))).)[.....)]((((((]].....))))))..))).))) 5'-monophosphate Z:P Guanine Riboswitch bound to hypoxanthine.; 5'-monophosphate Z:P guanine riboswitch 5ccb N 77 2.0 RF00005 URS00008FED2A_9606 26470919 0030533 0006412 9606 ggcccggauagcucagucgguagagcaucagacuuuuaaucugaggguccaggguucaagucccuguucgggcgcca .<<<<<<<..<<<<........>>>>.<<<<<.<...>.>>>>>.....<<<<<.......>>>>>>>>>>>>.... ((((((((..((((........)))).(((((.(...).))))).....(((((.......))))))))))))..). Crystal structure of human m1A58 methyltransferase in a complex with tRNA3Lys and SAH; tRNA3Lys 5ccx N 77 2.1 RF00005 URS00008FED2A_9606 26470919 0030533 0006412 9606 ggcccggauagcucagucgguagagcaucagacuuuuaaucugaggguccaggguucangucccuguucgggcgcca .<<<<<<<..<<<<........>>>>.<<<<<.<...>.>>>>>.....<<<<<.......>>>>>>>>>>>>.... .(((((((..((((........)))).(((((.(...).))))).....(((((.......)))))))))))).... Structure of the product complex of tRNA m1A58 methyltransferase with tRNA3Lys as substrate; tRNA3Lys 5cd1 M 74 3.6 RF00005 URS00008FED2A_9606 26470919 0030533 0006412 9606 ggcccggauagcucagucgguagagcaucagacuuaaucugaggguccaggguucaagucccuguucgggcgcc .<<<<<<...<<<<........>>>>.<<<<<.....>>>>>.....<<<<<.......>>>>>.>>>>>>... .(((((((..((((........)))).(((((.....))))).....(((((.......))))))))))))... Structure of an asymmetric tetramer of human tRNA m1A58 methyltransferase in a complex with SAH and tRNA3Lys; tRNA3Lys 5cd1 N 76 3.6 RF00005 URS00008FED2A_9606 26470919 0030533 0006412 9606 ggcccggauagcucagucgguagagcaucagacuuuuaaucugaggguccaggguucaagucccuguucgggcgcc .<<<<<<<..<<<<........>>>>.<<<<<.<...>.>>>>>.....<<<<<.......>>>>>>>>>>>>... ((((((((..((((........)))).(((((.(...).))))).....((((.........)))))))))))..) Structure of an asymmetric tetramer of human tRNA m1A58 methyltransferase in a complex with SAH and tRNA3Lys; tRNA3Lys 5czp QV 77 3.29996 RF00005 URS000041AF00_511145 27681416 0030533 0006412 511145 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(.(.(..]....).).)))))))..... 70S termination complex containing E. coli RF2; P-site tRNA fMet 5czp XV 77 3.29996 RF00005 URS000041AF00_511145 27681416 0030533 0006412 511145 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<.........>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((.(..]....).)))))))))..... 70S termination complex containing E. coli RF2; P-site tRNA fMet 5d8b XC 77 3.63 RF00005 URS000041AF00_562 26412335 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(.(((..]....))).)))))))..... Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch; tRNA 5d8b BD 77 3.63 RF00005 URS000041AF00_562 26412335 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(.(((..]....))).)))))))..... Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch; tRNA 5d8b ED 77 3.63 RF00005 URS000041AF00_562 26412335 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch; tRNA 5d8b FD 77 3.63 RF00005 URS000041AF00_562 26412335 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch; tRNA 5dfe QV 77 3.09998 RF00005 URS000041AF00_562 27681416 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<.........>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(.(.(..]....).).)))))))..... 70S termination complex containing E. coli RF2; P-site tRNA fMet 5dfe XV 77 3.09998 RF00005 URS000041AF00_562 27681416 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<.........>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((.(..]....).)))))))))..... 70S termination complex containing E. coli RF2; P-site tRNA fMet 5doy 1w 75 2.6 RF00005 URS00005AA258_562 26028538 0030533 0006412 562 gcccgganagcucagcgguagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<.......>>>><<<<<<<.....>>>>>>.>...<<<<<.......>>>>>>>>>>>>.... (((((((..((((....[..)))).((((.........)))).....(((((..]....)))))))))))).... Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolution; A-site and E-site tRNAs 5doy 1x 76 2.6 RF00005 URS000041AF00_562 26028538 0030533 0006412 562 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolution; P-site tRNA 5doy 1y 74 2.6 RF00005 URS00005AA258_562 26028538 0030533 0006412 562 gcccgganagcucaggguagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<......>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((......)))).((((.........)))).....(((((.......)))))))))))).... Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolution; A-site and E-site tRNAs 5doy 2w 74 2.6 RF00005 URS00005AA258_562 26028538 0030533 0006412 562 cccgganagcucagcgguagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<..<<<<.......>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((....[..)))).((((.........)))).....(((((..]....)))))))))))..... Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolution; A-site and E-site tRNAs 5doy 2x 76 2.6 RF00005 URS000041AF00_562 26028538 0030533 0006412 562 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolution; P-site tRNA 5doy 2y 73 2.6 RF00005 URS00005AA258_562 26028538 0030533 0006412 562 gcccgganagcucagggagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<.....>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((...[.)))).((((.........)))).....(((((..]....)))))))))))).... Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolution; A-site and E-site tRNAs 5e54 A 65 2.3 RF00167 URS000080E2A9_672 27841871 0009113 672 gggaagauauaauccuaaugauaugguuugggaguuucuaccaagagccuuaaacucuugauuau ......<<<...<<<<<<......<<.>>>>>><<....>><<<<<<>>.....>>>>>>..>>> ......(((...((((((......[[.))))))((.{..))((((((]].....))))))}.))) Two apo structures of the adenine riboswitch aptamer domain determined using an X-ray free electron laser; Vibrio vulnificus strain 93U204 chromosome II, adenine riboswitch aptamer domain 5e54 B 68 2.3 RF00167 URS000080E2A9_672 27841871 0009113 672 gggaagauauaauccuaaugauaugguuugggaguuucuaccaagagccuuaaacucuugauuaucuu ...<<<<<<...<<<<<<......<<.>>>>>><<....>><<<<<<>>.....>>>>>>..>>>>>> ...((((((...((((((......[[.))))))((.{..))((((((]].....))))))}.)))))) Two apo structures of the adenine riboswitch aptamer domain determined using an X-ray free electron laser; Vibrio vulnificus strain 93U204 chromosome II, adenine riboswitch aptamer domain 5e6m C 74 2.927 RF00005 URS0000305D7E_9606 27261259 0030533 0006412 9606 ncgccgcugguguagugguaucaugcaagauucccauucuugcgacccggguucgauucccgggcggcgcacca <<<<<<<..<<<.........>>><<<<<<.......>>>>>>...<<<<<.......>>>>>>>>>>>>.... (((((((..(((.....[...)))((((((.......))))))...(((((..]....)))))))))))).... Crystal structure of human wild type GlyRS bound with tRNAGly; tRNA(Gly) 5e6m E 74 2.927 RF00005 URS0000305D7E_9606 27261259 0030533 0006412 9606 ncgccgcugguguagugguaucaugcaagauucccauucuugcgacccggguucgauucccgggcggcgcacca <<<<<<<..<<<.........>>><<<<<<.......>>>>>>...<<<<<.......>>>>>>>>>>>>.... (((((((..(((.....[...)))((((((.......))))))...(((((..]....)))))))))))).... Crystal structure of human wild type GlyRS bound with tRNAGly; tRNA(Gly) 5e7k 1K 71 3.2 RF00005 URS00008FED39_562 26791911 0030533 0006412 562 gggucguuagcucaguggagcaguugacunuunaucaauugucgcaggnucgaauccugcacgacccacca <<<<<<...<<<<....>>>>.<<<<<.......>>>>>......<<<.......>>>...>>>>>>.... (((((.(..((((...[)))).((((.........)))).......((..]....))...).))))).... Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-site; tRNALys 5e7k 2K 77 3.2 RF00005 URS000041AF00_562 26791911 0030533 0006412 562 cgcggggnggagcagccugguagcucgucgggnucauaacccgaagnucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-site; tRNAfMet 5e7k 3K 76 3.2 RF00005 URS000042DDAB_562 26791911 0030533 0006412 562 gggucguuagcucaguugguagagcaguugacuuuuaaucaauuggucgcagguucgaauccugcacgacccacca <<<<<<...<<<<........>>>>.<<<<<.......>>>>>......<<<<.......>>>>..>>>>>>.... (((......((((........)))).(((((.......)))))......(((.........))).....))).... Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-site; tRNALys 5e7k 1L 73 3.2 RF00005 URS000042DDAB_562 26791911 0030533 0006412 562 gggucguuagcucaguuggugagcaguugacunuunaucaauugcgcaggnucgaauccugcacgacccacca <<<<<<<..<<<<...(...>>>>.<<<<<.......>>>>>...<<<<<...)...>>>>>>>>>>>>.... ((........(((.......)))..(.((.........)).)...(.(((.......))).).....)).... Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-site; tRNALys 5e7k 2L 77 3.2 RF00005 URS000041AF00_562 26791911 0030533 0006412 562 cgcggggnggagcagccugguagcucgucgggnucauaacccgaagnucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-site; tRNAfMet 5e7k 3L 76 3.2 RF00005 URS000042DDAB_562 26791911 0030533 0006412 562 gggucguuagcucaguugguagagcaguugacuuuuaaucaauuggucgcaggnucgaauccugcacgacccacca .<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .(((.((..((((........))))..(((.........)))......(..((.......))..))).)))..... Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-site; tRNALys 5e81 1K 72 2.95 RF00005 URS000042DDAB_562 26791911 0030533 0006412 562 gggucguuagcucagugagagcaguugacunuunaucaauugucgcaggnucgaauccugcacgacccacca <<<<<<...<<<<.....>>>>.<<<<<.......>>>>>.....<<<<.......>>>>..>>>>>>.... ..(...(..((((...[.)))).((((.........))))......(((..]....)))..)...)...... Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair; tRNA-Lys 5e81 2K 77 2.95 RF00005 URS000057545F_300852 26791911 0030533 0006412 300852 cgcggggnggagcagcccgguagcucgucgggnucauaacccgaagnucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair; tRNA-fMet 5e81 3K 70 2.95 RF00005 URS000042DDAB_300852 26791911 0030533 0006412 300852 gggucguuagcucagugagcaguugacuuuuaaucaauuggcgcagguucgaauccugcacgacccacca <<<<.<<...<<<...>>>..<<<<<.......>>>>>.....<<<<.......>>>>.>>.>>>>.... (((..(....(((...)))..(((((.......))))).......(.........)....)..))).... Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair; tRNA-Lys 5e81 1L 69 2.95 RF00005 URS000042DDAB_562 26791911 0030533 0006412 562 gggucguuagcucauggagcaguugacunuunaucaauugcgcaggnucgaauccugcacgacccacca <<..<<<..<<<<...>>>>.<<<<<.......>>>>>....<<<<.......>>>>.>>>..>>.... ((.......(((...[.)))..(((.........)))....(..((..]....))..).....)).... Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair; tRNA-Lys 5e81 2L 77 2.95 RF00005 URS000057545F_300852 26791911 0030533 0006412 300852 cgcggggnggagcagcccgguagcucgucgggnucauaacccgaagnucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair; tRNA-fMet 5e81 3L 72 2.95 RF00005 URS000042DDAB_300852 26791911 0030533 0006412 300852 gggucguuagcucaggagagcaguugacuuuuaaucaauuggucgcagguucgaauccugcacgacccacca .<<<<<<..<<<<....>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .(((.((..((((....))))((.(((.......))).))....(.(...........).))).)))..... Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair; tRNA-Lys 5el4 1K 69 3.15 RF00005 URS000042DDAB_83333 26791911 0030533 0006412 83333 gggucguuagcucaguggagcaguugacunuunaucaauucgcaggnucgaauccugcacgacccacca <<<<.....<<<<....>>>>.<<<<<.......>>>>>....<<<.......>>>.....>>>>.... ..(......(((......)))..(((.........))).....(((.......)))......)...... Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position; tRNA-Lys 5el4 2K 77 3.15 RF00005 URS000041AF00_83333 26791911 0030533 0006412 83333 cgcggggnggagcagccugguagcucgucgggnucauaacccgaagnucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position; tRNA-fMet 5el4 3K 76 3.15 RF00005 URS000042DDAB_83333 26791911 0030533 0006412 83333 gggucguuagcucaguugguagagcaguugacuuuuaaucaauuggucgcagguucgaauccugcacgacccacca <<<<.<<..<.<..........>.>.<<<<<.......>>>>>.......<<<.......>>>..>>.>>>>.... (((..(....(.(........).)..((((.........)))).......(.(........))...)..))).... Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position; tRNA-Lys 5el4 1L 74 3.15 RF00005 URS000042DDAB_83333 26791911 0030533 0006412 83333 gggucguuagcucaguuggugagcaguugacuuuuaaucaauugucgcaggnucgaauccugcacgacccacca .<.<<<<..<<<<.......>>>>....<<.......>>........<<<<.......>>>>.>>>>.>..... ...(((...((((....[..))))...((.........))..........(..]....).....)))....... Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position; tRNA-Lys 5el4 2L 76 3.15 RF00005 URS000041AF00_83333 26791911 0030533 0006412 83333 cgcggggnggagcagccuggagcucgucgggnucauaacccgaagnucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))..... Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position; tRNA-fMet 5el4 3L 74 3.15 RF00005 URS000042DDAB_83333 26791911 0030533 0006412 83333 gggucguuagcucaggguagagcaguugacuuuuaaucaauuggucgcagguucgaauccugcacgacccacca <<<<<<<..<<<<......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((......))))..(((.........)))......((((.........))))))))))).... Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position; tRNA-Lys 5el5 1K 69 3.15 RF00005 URS000042DDAB_83333 26791911 0030533 0006412 83333 gggucguuagcucaguggagcaguugacunuunaucaauucgcaggnucgaauccugcacgacccacca <<<<..................<<<<<.......>>>>>.....<<.......>>......>>>>.... .......................(((.........)))......((.......)).............. Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position; tRNALys 5el5 2K 77 3.15 RF00005 URS000057545F_83333 26791911 0030533 0006412 83333 cgcggggnggagcagcccgguagcucgucgggnucauaacccgaagnucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position; tRNAfMet 5el5 3K 76 3.15 RF00005 URS000042DDAB_83333 26791911 0030533 0006412 83333 gggucguuagcucaguugguagagcaguugacuuuuaaucaauuggucgcagguucgaauccugcacgacccacca .<<<<<...<<<<........>>>>.<<<<<.......>>>>>......<<<<.......>>>>..>>>>>..... .(((.....(((..........)))..((((.......)))).......((((.......))))....)))..... Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position; tRNALys 5el5 1L 74 3.15 RF00005 URS000042DDAB_83333 26791911 0030533 0006412 83333 gggucguuagcucaguuggugagcaguugacuuuuaaucaauugucgcaggnucgaauccugcacgacccacca <..<<<...<<<.........>>>..<<<<.......>>>>.......<<<.......>>>...>>>..>.... ....((....((.........))....((.........)).........((.......))....))........ Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position; tRNALys 5el5 2L 77 3.15 RF00005 URS000057545F_83333 26791911 0030533 0006412 83333 cgcggggnggagcagcccgguagcucgucgggnucauaacccgaagnucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position; tRNAfMet 5el5 3L 76 3.15 RF00005 URS000042DDAB_83333 26791911 0030533 0006412 83333 gggucguuagcucaguugguagagcaguugacuuuuaaucaauuggucgcagguucgaauccugcacgacccacca <<<<.....<<<..........>>>..<<<<.......>>>>......<<<<.........>>>>...>>>>.... (((......((............))...((.........)).......(((.(.......).)))....))).... Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position; tRNALys 5el6 1K 69 3.1 RF00005 URS000042DDAB_83333 26791911 0030533 0006412 83333 gggucguuagcucaguggagcaguugacunuunaucaauucgcaggnucgaauccugcacgacccacca <<<<.<<...<<<....>>>..<<<<<.......>>>>>..<<<<<.......>>>>>>>.>>>>.... ((((..(.........[.....((((.........))))...(.((..]....)).).)..)))).... Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position and antibiotic paromomycin; tRNALys 5el6 2K 77 3.1 RF00005 URS000057545F_83333 26791911 0030533 0006412 83333 cgcggggnggagcagcccgguagcucgucgggnucauaacccgaagnucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position and antibiotic paromomycin; E. coli tRNAfMet 5el6 3K 76 3.1 RF00005 URS000042DDAB_83333 26791911 0030533 0006412 83333 gggucguuagcucaguugguagagcaguugacuuuuaaucaauuggucgcagguucgaauccugcacgacccacca <<<<.....<<<<........>>>>.<<<<<.......>>>>>.......<<<.......>>>.....>>>>.... ((((.....((((........))))..(((.........)))........(...........).....)))).... Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position and antibiotic paromomycin; tRNALys 5el6 1L 73 3.1 RF00005 URS000042DDAB_83333 26791911 0030533 0006412 83333 gggucguuagcucaguuggugagcaguugacunuunaucaauugcgcaggnucgaauccugcacgacccacca <<<<<<<..<<<<...<...>>>>.<.<<<.......>>>.>....<<<<...>...>>>>.>>>>>>>.... ((...(....(((....[..)))..(.((.........)).)...((.((..]....)).)).)...)).... Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position and antibiotic paromomycin; tRNALys 5el6 2L 77 3.1 RF00005 URS000057545F_83333 26791911 0030533 0006412 83333 cgcggggnggagcagcccgguagcucgucgggnucauaacccgaagnucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position and antibiotic paromomycin; E. coli tRNAfMet 5el6 3L 76 3.1 RF00005 URS000042DDAB_83333 26791911 0030533 0006412 83333 gggucguuagcucaguugguagagcaguugacuuuuaaucaauuggucgcagguucgaauccugcacgacccacca .<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((..((..(.((........)).)..(((.........)))......(..((.......))..)))..))..... Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position and antibiotic paromomycin; tRNALys 5el7 1K 69 3.15 RF00005 URS000042DDAB_83333 26791911 0030533 0006412 83333 gggucguuagcucaguggagcaguugacunuunaucaauucgcaggnucgaauccugcacgacccacca <<<<<....<<<......>>>.<<<<<.......>>>>>....<<<.......>>>....>>>>>.... (.((.....((........))..(((.........)))......((.......))......)).).... Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin; tRNALys 5el7 2K 77 3.15 RF00005 URS000057545F_83333 26791911 0030533 0006412 83333 cgcggggnggagcagcccgguagcucgucgggnucauaacccgaagnucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin; E. coli tRNAfMet 5el7 3K 76 3.15 RF00005 URS000042DDAB_83333 26791911 0030533 0006412 83333 gggucguuagcucaguugguagagcaguugacuuuuaaucaauuggucgcagguucgaauccugcacgacccacca ..<<......<<..........>>..<<<<<.......>>>>>.......<<<.......>>>.....>>...... ...(.....((((........)))).((((.........)))).......((.........))....)........ Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin; tRNALys 5el7 1L 73 3.15 RF00005 URS000042DDAB_83333 26791911 0030533 0006412 83333 gggucguuagcucaguuggugagcaguugacunuunaucaauugcgcaggnucgaauccugcacgacccacca <<.<<<<..<<<.........>>>.<<<<<.......>>>>>.....<<<.......>>>..>>>>.>>.... ((..(.(...(.(.......).)..((((.........))).)....(((.......)))..).)..)).... Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin; tRNALys 5el7 2L 77 3.15 RF00005 URS000057545F_83333 26791911 0030533 0006412 83333 cgcggggnggagcagcccgguagcucgucgggnucauaacccgaagnucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin; E. coli tRNAfMet 5el7 3L 75 3.15 RF00005 URS000042DDAB_83333 26791911 0030533 0006412 83333 gggucguuagccaguugguagagcaguugacuuuunaucaauuggucgcagguucgaauccugcacgacccacca .<<<.....................<<<<<.......>>>>>.....<<<<.........>>>>...>>>..... .........(.............)..(((.........)))........(...........)............. Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin; tRNALys 5f8k 1x 76 2.8 RF00005 URS00002905B5_83333 26792896 0030533 0006412 83333 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the Bac7(1-16) antimicrobial peptide bound to the Thermus thermophilus 70S ribosome; tRNAiMet 5f8k 2x 76 2.8 RF00005 URS00002905B5_83333 26792896 0030533 0006412 83333 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the Bac7(1-16) antimicrobial peptide bound to the Thermus thermophilus 70S ribosome; tRNAiMet 5fjc A 94 1.71 RF00162 URS0000A7634F_119072 27016741 0010468 119072 ngcuuaucaagagagggggagugacuggcgcgaagaaccccggcaaccagaaauggugccaauuccugcagcggaaacguugaaagaugagccg <<<<<<<<......<<<...<<....((.>>......>>>.<<<<.<<<....>>>>>>>....))..<<<<<....>>>>>...>>>>>>>>. ((((((((....(.(((...(((.[.[[)))......))))(((..(((....))).)))...(]].](((((....)))))..))))))))). SAM-I riboswitch bearing the H. marismortui Kt-7 variant C-2bU; SAM-I RIBOSWITCH 5fk1 A 94 2.5 RF00162 URS0000A76377_119072 27016741 0010468 119072 ggcuuaucaagagagggggagcgacuggcgcgaagauccccggcaaccagaaauggugccaauuccugcagcggaaacguugaaagaugagccg <<<<<<<<......<<<<..<<<...((>>>.....>>>>.<<<<.<<<....>>>>>>>....))..<<<<<....>>>>>...>>>>>>>>. ((((((((......(((...(((.[.[[)))......))).(((..(((....))).)))...(]].](((((....)))))..))))))))). SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is UG; SAM-I RIBOSWITCH 5fk2 A 94 2.6 RF00162 URS0000A76363_119072 27016741 0010468 119072 ggcuuaucaagagagggggagcgacuggcgcgaagagccccggcaaccagaaauggugccaauuccugcagcggaaacguugaaagaugagccg <<<<<<<<......<<<...<<<...((>>>......>>>.<<<<.<<<....>>>>>>>....))..<<<<<....>>>>>...>>>>>>>>. ((((((((....(.(((...(((.[.[[)))......))))(((..(((....))).)))...(]].](((((....)))))..))))))))). SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is GG; SAM-I RIBOSWITCH 5fk3 A 94 2.5 RF00162 URS0000A76386_119072 27016741 0010468 119072 ggcuuaucaagagagggcgagcgacuggcgcgaagacccccggcaaccagaaauggugccaauuccugcagcggaaacguugaaagaugagccg <<<<<<<<......<<<...<<<...((>>>......>>>.<<<<.<<<....>>>>>>>....))..<<<<<....>>>>>...>>>>>>>>. ((((((((....(.(((...(((.[.[[)))......))))(((..(((....))).)))...(]].](((((....)))))..))))))))). SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is CC; SAM-I RIBOSWITCH 5fk4 A 93 2.43 RF00162 URS0000A7631C_119072 27016741 0010468 119072 ggcuuaucaagagagggugagcgacuggcgcgaagauccccggcaaccagaaauggugccaauuccugcagcggaaacguugaaagaugagcc <<<<<<<<......<<<...<<<...((>>>......>>>.<<<<.<<<....>>>>>>>....))..<<<<<....>>>>>...>>>>>>>> ((((((((....(.(((...(((.[.[[)))......))))(((..(((....))).)))...(]].](((((....)))))..))))))))) SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is UU; SAM-I RIBOSWITCH 5fk5 A 94 3.315 RF00162 URS0000A76359_119072 27016741 0010468 119072 ggcuuaucaagagagggagagcgacuggcgcgaagaaccccggcaaccagaaauggugccaauuccugcagcggaaacguugaaagaugagccg <<<<<<<<......<<<...<<<...((>>>......>>>.<<<<.<<<....>>>>>>>....))..<<<<<....>>>>>...>>>>>>>>. ((((((((....(.(((...(((.[.[[)))......))))(((..(((....))).)))...(]].](((((....)))))..))))))))). SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is AA; SAM-I RIBOSWITCH 5fk6 A 94 2.5 RF00162 URS0000A7635A_119072 27016741 0010468 119072 ggcuuaucaagagagggagagcgacuggcgcgaagacccccggcaaccagaaauggugccaauuccugcagcggaaacguugaaagaugagcca <<<<<<<<......<<<...<<<...((>>>......>>>.<<<<.<<<....>>>>>>>....))..<<<<<....>>>>>...>>>>>>>>. ((((((((....(.(((...(((.[.[[)))......))))(((..(((....))).)))...(]].](((((....)))))..))))))))). SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is CA; SAM-I RIBOSWITCH 5fkd A 94 3.0 RF00162 URS0000A7635B_119072 27016741 0010468 119072 ggcuuaucaagagagggagagcgacuggcgcgaagauccccggcaaccagaaauggugccaauuccugcagcggaaacguugaaagaugagccg <<<<<<<<......<<<<..<<<...((>>>.....>>>>.<<<<.<<<....>>>>>>>....))..<<<<<....>>>>>...>>>>>>>>. ((((((((....(.(((...(((.[.[[)))......))))(((..(((....))).)))...(]].](((((....)))))..))))))))). SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is UA; SAM-I RIBOSWITCH 5fke A 94 2.8 RF00162 URS0000A7638A_119072 27016741 0010468 119072 ggcuuaucaagagagggugagcgacuggcgcgaagagccccggcaaccagaaauggugccaauuccugcagcggaaacguugaaagaugagccg <<<<<<<<......<<<<..<<<...((>>>.....>>>>.<<<<.<<<....>>>>>>>....))..<<<<<....>>>>>...>>>>>>>>. ((((((((....(.((((..(((.[.[[))).....)))))(((..(((....))).)))...(]].](((((....)))))..))))))))). SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is GU; SAM-I RIBOSWITCH 5fkf A 94 2.8 RF00162 URS0000A76399_119072 27016741 0010468 119072 ggcuuaucaagagagggcgagcgacuggcgcgaagauccccggcaaccagaaauggugccaauuccugcagcggaaacguugaaagaugagccg <<<<<<<<......<<<...<<<...((>>>......>>>.<<<<.<<<....>>>>>>>....))..<<<<<....>>>>>...>>>>>>>>. ((((((((......(((...(((.[.[[)))......))).(((..(((....))).)))...(]].](((((....)))))..))))))))). SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is UC; SAM-I RIBOSWITCH 5fkg A 94 2.95 RF00162 URS0000A76343_119072 27016741 0010468 119072 ggcuuaucaagagagggggagugacuggcgcgaagacccccggcaaccagaaauggugccaauuccugcagcggaaacguugaaagaugagccg <<<<<<<<......<<<<..<<....((.>>.....>>>>.<<<<.<<<....>>>>>>>....))..<<<<<....>>>>>...>>>>>>>>. ((((((((....(.(((...(((.[.[[)))......))))(((..(((....))).)))...(]].](((((....)))))..))))))))). SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is CG; SAM-I RIBOSWITCH 5fkh A 94 2.65 RF00162 URS0000A76344_119072 27016741 0010468 119072 ggcuuaucaagagagggugagcgacuggcgcgaagacccccggcaaccagaaauggugccaauuccugcagcggaaacguugaaagaugagccg <<<<<<<<......<<<...<<<...((>>>......>>>.<<<<.<<<....>>>>>>>....))..<<<<<....>>>>>...>>>>>>>>. ((((((((....(.(((...(((.[.[[)))......))))(((..(((....))).)))...(]].](((((....)))))..))))))))). SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is CU; SAM-I RIBOSWITCH 5flx z 264 3.9 RF00061,RF00620 URS000080E1FF_11103 26604301 0043022 0006417 11103 ccugugaggaacuacugucuucacgcagaaagcgucuagccauggcguuaguaugagugucgugcagccuccaggacccccccucccgggagagccauaguggucugcggaaccggugaguacaccggaaugauuugggcgugcccccgcaagacugcuagccgaguaguguugggucgcgaaaggccuugugguacugccugauagggugcuugcgagugccccgggaggucucguagaccgugcaccaugagcacgaauccu <<<<.<<<<.....<<<<<..<<<.<<....<<<<<.......>>>>>.....>>.>>>..>.>>>>>>>>>>>>......<<<<<<<<<<<.<<<<<<<<<<<<<<<<<..<<<<<......>>>>><<<.>>>.<<<....>>>>>>>.>>>>>>>>><<<.....<<<......>>>....>>>....>>>>.>><<<<....>>>><<..(((((.>>>>>>>>>>>.)))))........................... ((((.((((.....(((((..(((.((....(((((.......))))).....)).)))..).))))))))))))......(((((((((((.(((((((.(((((((((..((((((....))))))(((.))).((......)))))).))))).)))(((.....((........))....)))(..)))))[))((((..].))))((..[[[[[.))))))))))).]]]]]........................... Mammalian 40S HCV-IRES complex; HCV-IRES 5g2x A 692 3.8 RF00029 URS0000A76354_1358 27136327 0000373 1358 gugcgcccagauaggguguuaagucaaguaguuuaagguacuacucuguaagauaacacagaaaacagccaaccuaaccgaaaagcgaaagcugauacgggaacagagcacgguuggaaagcgaugaguuaccuaaagacaaucggguacgacugagucgcaauguuaaucagauauaagguauaaguuguguuuacugaacgcaaguuucuaauuucgguuaugugucgauagaggaaagugucugaaaccucuaguacaaagaaagguaaguuaugguuguggacuuaucuguuaucaccacauuuguacaaucuguaggagaaccuaugggaacgaaacgaaagcgaugccgagaaucugaauuuaccaagacuuaacacuaacuggggauacccuaaacaagaaugccuaaaggaggaaaaaggcuauagcacuagagcuugaaaaucuugcaaggguacggaguacucguaguagucugagaaggguaacgcccuuuacauggcaaagggguacaguuauuguguacuaaaauuaaaaauugauuagggaggaaaaccucaaaccaacaauggcaauuuuagacaauaacagagccguauacuccgagagggguacguacgguucccgaagaggguggugcaaaccagucacaguaaugugaacaaggcgguaccucccuacuucac ......<<.<.....<<<<<<<<<...<<<<.........>>>><<<<<....((((>>>>>.((((..<<<<<...<<.....<......>......>>...........>>>>>....((((..((((......<<<<<.........))))...))))..))))...[[[[............<<.......>>......{..{.[[........................(((....>>>>>....)))......<.<<<...<<<..<.<.........>..>.>>>.))))........>>>>........<<<<<....>>>>>........]]}....}............]]]]...........>>>>>>>>.>...>.>>..<<<<<<...<<<<....<<<..>>>........<<<<..........>>>>.......>>>>..>>>>>>....<<<<<..............<.<<<.....>>.>>.............>>>>>.<<<<<<<....<<<<<<<<....<<<.........<<.....>>.........>>>...>>>>>>>>.>>>>>>>..........<<<<......>>>>..............<<<.<<<.<<<<....<....<<<<....>>>>......>...>>>>..>>>.>>>... ......(..(......((((.(((...((((.........))))((.(......[[..).))...(...((((...........((....))....................)))).....(((..(((.......[[.[[..........)))...)))....).....((((........(....................(...((.........(.........)....(((.....]].]].....))).....(((.(.....(.((((.........)))).)....]].........))))........(((........)))........)).....)...)........))))...........))).)))).....).)...(.((.....(.((....(((..)))........(((...(....)...))).......)).)...))..).....((..............................................))...(((((((.....((((.(.....((..........(.....)..........))....).))))..)))))))..........(((..(....)..))..).............(...(....((.........(((....)))..........))....)....)..... Structure a of Group II Intron Complexed with its Reverse Transcriptase; GROUP II INTRON 5g2y A 630 4.5 RF00029 URS0000A76348_1358 27136327 0000373 1358 augcgcccagauaggguguuaagucaaguaguuuaagguacuacucuguaagauaacacagaaaacagccaaccuaaccgaaaagcgaaagcugauacgggaacagagcacgguuggaaagcgaugaguuaccuaaagacaaucggguacgacugagucgcaauguuaaucagauauaagguauaaguuguguuuacugaacgcaaguuucuaauuucgguuaugugucgauagaggaaagugucugaaaccucuaguacaaagaaagguaaguuauguggacuuaucuguuaucaccacauuuguacaaucuguaggagaaccuaugggaacgaaacgaaagcgaugccgagaaucugaauuuaccaagacuuaacacuaacuggggauacccuaaacaagaaugccuaaaggaggaaaaaggcuauagcacuagagcuugaaaaucuugcaaggguacggaguacucguaguagucugagaaggguaacgcccuuuacauggcaaagggguacaguuauugugacaauaacagagccguauacuccgagagggguacguacgguucccgaagaggguggugcaaaccagucacaguaaugugaacaaggcgguaccucccuacuucac .......<.<.....<..<<<<<<......<..........>..............[...........<<<<<.....<.....<<....>>......>.............>>>>>...<.<....<<<.......((((.........>>>.....>.>.........<<<<............<<.......>>.........<<<<<........<.......>........<....)))).....>.......<<.<.....<<<<<<<<.....>>>>>>>>.].............>>>.......<..<.......>.>......>>>>>.................>>>>...........>>>>>>...>...>.>...<<<......<<<<....<......>.............<<....>>............>>>>.....>>>....<<<<<..............<..<<......>>.>.............>>>>>..<<<.........>>>............<<<......>>>..............<<<...<..<<<<.........<<<......>>>..........>>>>...>...>>>.. .........(.....(...(((((.....(...........).......................(...(((((....(.....(......)......)............)))))......((....(........[[[...........).....)).....)......(((............((.......))..........((.........(.........)....(........]].].......)....((.......(((((((.......)))))))................)).......(((.(....).)))........))..................)))............)))))...)....)......((..............(......)..........................................)).....(((................(...(......)..)...............))).....((.....))..........(..(.(((......)))...)..)........((....(.(((((........((........)).........))))).).....))... Structure a of Group II Intron Complexed with its Reverse Transcriptase; GROUP II INTRON 5gad 1 43 3.7 RF00169 URS00008FED38_562 26804923 0006617 0048501 562 ucuguuuaccaggucagguccggaaggaagcagccaaggcaga <<<<<<<....<<<....<<<....>>>....>>>.>>>>>>> (((((((....(((....(((....)))....))).))))))) RNC-SRP-SR complex early state; ESRP 4.5S RNA 5gaf 1 43 4.3 RF00169 URS00008FED38_562 26804923 0006617 0048501 562 ucuguuuaccaggucagguccggaaggaagcagccaaggcaga <<<<<<<....<<<....<<<....>>>....>>>.>>>>>>> (((((((....(((....(((....)))....))).))))))) RNC in complex with SRP; SRP 4.5S RNA 5gag 1 43 3.8 RF00169 URS00008FED38_562 26804923 0006617 0048501 562 ucuguuuaccaggucagguccggaaggaagcagccaaggcaga <<<<<<<....<<<....<<<....>>>....>>>.>>>>>>> ((((.((....(((....(((....)))....))).)).)))) RNC in complex with SRP-SR in the closed state; SRP 4.5S RNA 5gah 1 43 3.8 RF00169 URS00008FED38_562 26804923 0006617 0048501 562 ucuguuuaccaggucagguccggaaggaagcagccaaggcaga <<<<<<<....<<<....<<<....>>>....>>>.>>>>>>> ((((.((....(((....(((....)))....))).)).)))) RNC in complex with SRP with detached NG domain; SRP 4.5S RNA 5gak A 76 3.88 RF00005 URS000042DDAB_4932 26715760 0030533 0006412 4932 gggucguuagcucaguugguagagcaguugacuuuuaaucaauuggucgcagguucgaauccugcacgacccacca <<<<<<<..<<<<........>>>><<<<<<.......>>>>>>.....<<<.........>>>.>>>>>>>.... ((((((...(((..........)))(.((((.......)))).).....(..(.......)..)..)))))).... Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A; The A-site tRNA was modeled based on an E. coli tRNA-Lys 5gak B 77 3.88 RF00005 URS000009EE82_4932 26715760 0030533 0006412 4932 ggagcgguaguucagucgguuagaauaccugccugucacgcagggggucgcggguucgagucccguccguuccgcca <<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((.(((...(((.........)))..(((((.......)))))......((((.......)))).))).))).... Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A; P-site tRNA 5gam U 141 3.7 RF00020 URS00008FED40_4932 26829225,26106855 0000244,0000353 0005682,0046540 4932 cagcuuuacagaucaauggcggagggaggucaacaucaagaacugugggcgccuauagaacuuauaacgaacaugguucuugccuuuuaccagaaccauccggguguugucuccauagaaacagguaaagcuguauuuuuu <<<<<<<<<.......<.......<<<<<.<<<<<<<<<<..<<<<<<<..>>>>>>>..>>>.........<<<<<<<<...........>>>>>>>>...>>>>>>>>>>>>......>...>>>>>>>>>........ (((((((((.......(.......((((..((((((((((..(((((((())))))))..))).....(...((((((((...........)))))))).).))))))).))))......)...)))))))))........ Foot region of the yeast spliceosomal U4/U6.U5 tri-snRNP; U5 snRNA 5gan V 124 3.7 RF00015 URS00001143F5_4932 26829225,26106855 0017070 0000244,0000353 0005687,0046540 4932 auccuuaugcacgggaaauacgcauaucagugaggauucguccgagauuguguuuuugcugguugaaauuauaaaccagaccgucuccucauggucaaucaagacuauguagggaauuuuugga ...................<<<<<.<<<.....<<<....>>>..>>>>>>>>.................................<<<.<<<<<<......>>>>>>..>>>........... ...................(((((.(((.....(((....)))..))))))))..................................(((((.(((......))).))).))............ The overall structure of the yeast spliceosomal U4/U6.U5 tri-snRNP at 3.7 Angstrom; U4 snRNA 5gan W 80 3.7 RF00026 URS00006184A9_4932 26829225,26106855 0030621 0000244,0000353 0005688,0046540 4932 guucgcgaacuucguggacauuuggucaauuugaauacagagaucagcaguuccccugcauaaggaugaaccguuguuuu <<<<<<<<<.>>>>>>>>>.........<<<..>>>............................................ (((((((((.))))))))).......(.(((..)))...)........................................ The overall structure of the yeast spliceosomal U4/U6.U5 tri-snRNP at 3.7 Angstrom; U6 snRNA 5gan U 141 3.7 RF00020 URS000053F313_4932 26829225,26106855 0000244,0000353 0005682,0046540 4932 cagcuuuacagaucaauggcggagggaggucaacaucaagaacugugggcgccuauagaacuuauaacgaacaugguucuugccuuuuaccagaaccauccggguguugucuccauagaaacagguaaagcuguauuuuuu <<<<<<<<<.......<.......<<<<<.<<<<<<<<<<..<<<<<<<..>>>>>>>..>>>.........<<<<<<<<...........>>>>>>>>...>>>>>>>>>>>>......>...>>>>>>>>>........ (((((((((.......(.......((((..((((((((((..(((((((())))))))..))).....(...((((((((...........)))))))).).))))))).))))......)...)))))))))........ The overall structure of the yeast spliceosomal U4/U6.U5 tri-snRNP at 3.7 Angstrom; U5 snRNA 5gap V 67 3.6 RF00015 URS00008FED2F_4932 26829225 0017070 0000244,0000353 0005687,0046540 4932 auccuuaugcacgggaaauacgcauaucagugaggauucguccgagauuguguuuuugcugguugaa ...................<<<<<.<<<.....<<<....>>>..>>>>>>>>.............. ...................(((((.(((.....(((....)))..)))))))).............. Body region of the U4/U6.U5 tri-snRNP; U4 snRNA, 5' region, nucleotides 1-67 5gap W 56 3.6 RF00026 URS00006184A9_4932 26829225 0030621 0000244,0000353 0005688,0046540 4932 auuuggucaauuugaauacagagaucagcaguuccccugcauaaggaugaaccguu .........<<<..>>>....................................... .......(.(((..)))...)................................... Body region of the U4/U6.U5 tri-snRNP; U6 snRNA 5gap U 20 3.6 RF00020 URS000053F313_4932 26829225 0000244,0000353 0005682,0046540 4932 uucuugccuuuuaccagaac <<<<...........>>>>. ((((...........)))). Body region of the U4/U6.U5 tri-snRNP; U5 snRNA 5gm6 D 117 3.5 RF00020 URS000053F313_4932 27445306 0000244,0000353 0005682,0046540 4932 ggaggucaacaucaagaacugugggccuuugccuauagaacuuauaacgaacaugguucuugccuuuuaccagaaccauccggguguugucuccauccauauuuuuuggaacuuuuc <<<<<.<<<<<<<.....<<<<<<<<....>>>>>>>>..............<<<<<<<<...........>>>>>>>>...>>>>>>>>>>>>....................... (((((.(((((((.....((((((((....)))))))).........((...((((((((.(.......).)))))))).))))))))))))))....................... Cryo-EM structure of the activated spliceosome (Bact complex) at 3.5 angstrom resolution; Saccharomyces cerevisiae strain CDRDR_sf_H chromosome VII sequence 5gm6 E 103 3.5 RF00026 URS00006184A9_4932 27445306 0030621 0000244,0000353 0005688,0046540 4932 guucgcgaaguaacccuucguggacauuuggucaauuugaaacaauacagagaugaucagcaguuccccugcauaaggaugaaccguuuuacaaagagauuua <<<<<<<<<<.....>>>>>>>>>>.....................................<<<..<<<.....>>>...>>>................... ((.(((((((.....))))))).)).....................................(((.((((.....)))..))))................... Cryo-EM structure of the activated spliceosome (Bact complex) at 3.5 angstrom resolution; Saccharomyces cerevisiae strain T.52_2H chromosome XII sequence 5gm6 L 66 3.5 RF00004 URS000023C730_559292 27445306 0045131 0000348 0005686 559292 acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuuucaguguaacaacugaa ................................................<<<<<<......>>>>>> ................................................((((((......)))))) Cryo-EM structure of the activated spliceosome (Bact complex) at 3.5 angstrom resolution; U2 snRNA 5gmk D 117 3.4 RF00020 URS000053F313_559292 27445308 0000244,0000353 0005682,0046540 559292 ggaggucaacaucaagaacugugggccuuugccuauagaacuuauaacgaacaugguucuugccuuuuaccagaaccauccggguguugucuccauccauauuuuuuggaacuuuuc <<<<<.<<<<<<<.....<<<<<<<<....>>>>>>>>..............<<<<<<<<...........>>>>>>>>...>>>>>>>>>>>>....................... (((((.(((((((.....((((((((....)))))))).........((...((((((((.(.......).)))))))).))))))))))))))....................... Cryo-EM structure of the Catalytic Step I spliceosome (C complex) at 3.4 angstrom resolution; U5 snRNA 5gmk E 103 3.4 RF00026 URS00006184A9_559292 27445308 0030621 0000244,0000353 0005688,0046540 559292 guucgcgaaguaacccuucguggacauuuggucaauuugaaacaauacagagaugaucagcaguuccccugcauaaggaugaaccguuuuacaaagagauuua <<<<<<<<<<.....>>>>>>>>>>.....................................<<<..<<<.....>>>...>>>................... ((((.(((((.....))))).))))......................................((.((((.....)))..))).................... Cryo-EM structure of the Catalytic Step I spliceosome (C complex) at 3.4 angstrom resolution; U6 snRNA 5gmk L 127 3.4 RF00004 URS000023C730_559292 27445308 0045131 0000348 0005686 559292 acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuuguaacaacuaaugaccucagaggcucaauuuguuacaauacauuuuuuggcaccgcgacccucgcacuuguggagucg ................................................<<<<<<<<.<...<.<<<<.>>>>.>..>.>>>>>>>>................<<...<<...........>>...>> ................................................((((((((.(.....((((.))))....).))))))))................((...(.............)...)) Cryo-EM structure of the Catalytic Step I spliceosome (C complex) at 3.4 angstrom resolution; U2 snRNA 5h5u 5 76 3.01 RF00005 URS000084076E_562 27906160 0030533 0006412 562 cgcgggguggagcagcugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((.....[..)))).(((((.......))))).....(((((..]....)))))))))))..... Mechanistic insights into the alternative translation termination by ArfA and RF2; P-site tRNA 5hau 1w 76 3.0 RF00005 URS000041AF00_562 26809677 0030533 0006412 562 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of antimicrobial peptide Bac7(1-19) bound to the Thermus thermophilus 70S ribosome; P-site tRNA 5hau 2w 76 3.0 RF00005 URS000041AF00_562 26809677 0030533 0006412 562 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of antimicrobial peptide Bac7(1-19) bound to the Thermus thermophilus 70S ribosome; P-site tRNA 5hc9 C 76 2.9 RF00005 URS00004EDC72_2336 27133023 0030533 0006412 2336 ggccagguagcucaguugguagagcacuggacugaaaauccaggugucggcgguucgauuccgccccuggccacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..))))..(((.........)))......(((((..]....)))))))))))).... Thermotoga maritima CCA-adding enzyme complexed with tRNA_CCA; tRNAphe 5hc9 D 76 2.9 RF00005 URS00004EDC72_2336 27133023 0030533 0006412 2336 ggccagguagcucaguugguagagcacuggacugaaaauccaggugucggcgguucgauuccgccccuggccacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).(((((.......))))).....(((((..]....)))))))))))).... Thermotoga maritima CCA-adding enzyme complexed with tRNA_CCA; tRNAphe 5hcp 1x 76 2.894 RF00005 URS000041AF00_562 26809677 0030533 0006412 562 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of antimicrobial peptide Metalnikowin bound to the Thermus thermophilus 70S ribosome; P-site tRNA 5hcp 2x 76 2.894 RF00005 URS000041AF00_562 26809677 0030533 0006412 562 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of antimicrobial peptide Metalnikowin bound to the Thermus thermophilus 70S ribosome; P-site tRNA 5hcq 1x 76 2.801 RF00005 URS000041AF00_562 26809677 0030533 0006412 562 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of antimicrobial peptide Oncocin d15-19 bound to the Thermus thermophilus 70S ribosome; P-site tRNA 5hcq 2x 76 2.801 RF00005 URS000041AF00_562 26809677 0030533 0006412 562 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of antimicrobial peptide Oncocin d15-19 bound to the Thermus thermophilus 70S ribosome; P-site tRNA 5hcr 1x 76 2.8 RF00005 URS000041AF00_562 26809677 0030533 0006412 562 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of antimicrobial peptide Oncocin 10wt bound to the Thermus thermophilus 70S ribosome; P-site tRNA 5hcr 2x 76 2.8 RF00005 URS000041AF00_562 26809677 0030533 0006412 562 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of antimicrobial peptide Oncocin 10wt bound to the Thermus thermophilus 70S ribosome; P-site tRNA 5hd1 1x 76 2.7 RF00005 URS000041AF00_562 26809677 0030533 0006412 562 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of antimicrobial peptide Pyrrhocoricin bound to the Thermus thermophilus 70S ribosome; P-site tRNA 5hd1 2x 76 2.7 RF00005 URS000041AF00_562 26809677 0030533 0006412 562 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of antimicrobial peptide Pyrrhocoricin bound to the Thermus thermophilus 70S ribosome; P-site tRNA 5hr6 C 68 2.88 RF00005 URS0000637C08_562 27081063 0030533 0006412 562 ccccuucgucuagaggcccaggacaccgcccuuucacggcgguaacagggguucgaauccccuagggg <<<<<..<<<<.........>>>>.<<<<<.......>>>>>....<<<<<.......>>>>>>>>>> (((((..((((....[....))))((((((.......))))))...(((((..]....)))))))))) X-ray crystal structure of C118A RlmN with cross-linked tRNA purified from Escherichia coli; tRNA Glu 5hr6 D 66 2.88 RF00005 URS0000637C08_562 27081063 0030533 0006412 562 cccuucgucuagaggcccaggacaccgcccuuucacggcgguaacagggguucgaauccccuaggg <<<<..<<<<.........>>>>.<<<<<.......>>>>>....<<<<<.......>>>>>>>>> ((((..((((....[....))))((((((.......))))))...(((((..]....))))))))) X-ray crystal structure of C118A RlmN with cross-linked tRNA purified from Escherichia coli; tRNA Glu 5hr7 D 70 2.4 RF00005 URS000037E2FF_562 27081063 0030533 0006412 562 ccccuucgucuagaggcccaggacaccgcccuuucacggcgguaacagggguucgaauccccuaggggac <<<<<..<<<<.........>>>>.<<<<<.......>>>>>....<<<<<.......>>>>>>>>>>.. (((((..((((....[....))))((((((.......))))))...(((((..]....)))))))))).. X-ray crystal structure of C118A RlmN from Escherichia coli with cross-linked in vitro transcribed tRNA; tRNA Glu 5hr7 C 70 2.4 RF00005 URS000037E2FF_562 27081063 0030533 0006412 562 ccccuucgucuagaggcccaggacaccgcccuuucacggcgguaacagggguucgaauccccuaggggac <<<<<..<<<<.........>>>>.<<<<<.......>>>>>....<<<<<.......>>>>>>>>>>.. (((((..((((....[....))))((((((.......))))))...(((((..]....)))))))))).. X-ray crystal structure of C118A RlmN from Escherichia coli with cross-linked in vitro transcribed tRNA; tRNA Glu 5ib7 1K 72 2.99 RF00005 URS000042DDAB_83333 27174928 0030533 0006412 83333 gggucguuagcucagugagagcaguugacunuunaucaauugucgcaggnucgaauccugcacgacccacca <<<<.<...<<<<.....>>>>.<<<<<.......>>>>>.....<<<<.......>>>>..>.>>>>.... (((...(..(.(....[...)).((((.........)))).......((..]....))...)...))).... Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet, near-cognate tRNALys with U-G mismatch in the A-site and antibiotic paromomycin; tRNALys 5ib7 2K 77 2.99 RF00005 URS000057545F_83333 27174928 0030533 0006412 83333 cgcggggnggagcagcccgguagcucgucgggnucauaacccgaagnucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet, near-cognate tRNALys with U-G mismatch in the A-site and antibiotic paromomycin; tRNAfMet 5ib7 3K 70 2.99 RF00005 URS000042DDAB_83333 27174928 0030533 0006412 83333 gggucguuagcucagugagcaguugacuuuuaaucaauuggcgcagguucgaauccugcacgacccacca .<<<.....<<<<...>>>><<<<<<.......>>>>>>.....<<<.......>>>.....>>>..... .((........(.....)...(((((.......))))).......(.........).......))..... Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet, near-cognate tRNALys with U-G mismatch in the A-site and antibiotic paromomycin; tRNALys 5ib7 1L 66 2.99 RF00005 URS000042DDAB_83333 27174928 0030533 0006412 83333 gggucguuagcucauggagcaguugacuuuuaaucaauugcgcagguucgaauccugcacgaccca ...<<<<..<<<<...>>>>.<<<<<.......>>>>>....<<<<.......>>>>.>>>>.... ((..(....(((...[.)))..(((.........)))......(((..]....)))....)..)). Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet, near-cognate tRNALys with U-G mismatch in the A-site and antibiotic paromomycin; tRNALys 5ib7 2L 77 2.99 RF00005 URS000057545F_83333 27174928 0030533 0006412 83333 cgcggggnggagcagcccgguagcucgucgggnucauaacccgaagnucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet, near-cognate tRNALys with U-G mismatch in the A-site and antibiotic paromomycin; tRNAfMet 5ib7 3L 72 2.99 RF00005 URS000042DDAB_83333 27174928 0030533 0006412 83333 gggucguuagcucaggagagcaguugacuuuuaaucaauuggucgcagguucgaauccugcacgacccacca .<<<<<<..<<<<....>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .(((..(..((((....))))...(((.......))).......(.(...........).))..)))..... Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet, near-cognate tRNALys with U-G mismatch in the A-site and antibiotic paromomycin; tRNALys 5ib8 1K 72 3.13 RF00005 URS000042DDAB_83333 27174928 0030533 0006412 83333 gggucguuagcucagngagagcaguugacunuunaucaauugucgcaggnucgaauccugcacgacccacca <<<<<....<<<<.....>>>>.<<<<<.......>>>>>.....<<<<.......>>>>...>>>>>.... (((...(..((((...[.)))).((((.........))))......(((..]....)))..)...))).... Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site; tRNALys 5ib8 2K 77 3.13 RF00005 URS000057545F_83333 27174928 0030533 0006412 83333 cgcggggnggagcagcccgguagcucgucgggnucauaacccgaagnucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site; tRNAfMet 5ib8 3K 70 3.13 RF00005 URS000042DDAB_83333 27174928 0030533 0006412 83333 gggucguuagcucagugagcaguugacuuuuaaucaauuggcgcagguucgaauccugcacgacccacca <<<<.....<<<<...>>>><<<<<<.......>>>>>>.....<<<.......>>>.....>>>>.... .((......(((.....)))..((((.......))))........((.......)).......))..... Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site; tRNALys 5ib8 1L 66 3.13 RF00005 URS000042DDAB_300852 27174928 0030533 0006412 300852 gggucguuagcucauggagcaguugacuuuuaaucaauugcgcaggnucgaauccugcacgaccca ...<<<<..<<<<...>>>>.<<<<<.......>>>>>....<<<<.......>>>>.>>>>.... .(..(....(((...[.))).(((((.......))))).....(((..]....)))....)..).. Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site; tRNALys 5ib8 2L 77 3.13 RF00005 URS000057545F_83333 27174928 0030533 0006412 83333 cgcggggnggagcagcccgguagcucgucgggnucauaacccgaagnucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site; tRNAfMet 5ib8 3L 72 3.13 RF00005 URS000042DDAB_83333 27174928 0030533 0006412 83333 gggucguuagcucaggagagcaguugacuuuuaaucaauuggucgcagguucgaauccugcacgacccacca .<<<<<<..<<<<....>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .(((.((..((((....))))...(((.......))).......(((...........))))).)))..... Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site; tRNALys 5ibb 1K 72 2.96 RF00005 URS00003179F7_83333 27174928 0030533 0006412 83333 gggugauuagcucagngagagcaccucccunacnaggaggggucggcggnucgaucccgucaucacccacca <<<<<....<<<<.....>>>>.<<<<<.......>>>>>.....<<<<.......>>>>...>>>>>.... (((((.(..((.(.....).)).(((((.......))))).......((.......))...).))))).... Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site; tRNAVal 5ibb 2K 77 2.96 RF00005 URS000057545F_83333 27174928 0030533 0006412 83333 cgcggggnggagcagcccgguagcucgucgggnucauaacccgaagnucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site; tRNAfMet 5ibb 3K 70 2.96 RF00005 URS000009F4BF_83333 27174928 0030533 0006412 83333 gggugauuagcucagcgagcaccucccuuacaaggagggggcggcgguucgaucccgucaucacccacca <<<<.<....<<<...>>>..<<<<<.......>>>>>......<<<.......>>>...>.>>>>.... .((..(....(((...)))..(((((.......)))))......................)..))..... Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site; tRNAVal 5ibb 1L 69 2.96 RF00005 URS000009F4BF_300852 27174928 0030533 0006412 300852 gggugauuagcucauggagcaccucccuuacaaggaggggcggcggnucgaucccgucaucacccacca <<.<<<<..<<<<...>>>>.<<<<<.......>>>>>....<<<<.......>>>>.>>>>.>>.... ((..(....(((.....))).(((((.......))))).....(((.......)))....)..)).... Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site; tRNAVal 5ibb 2L 76 2.96 RF00005 URS000057545F_83333 27174928 0030533 0006412 83333 cgcggggnggagcagcccgguagcucgucgggnucauaacccgaagncgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......)))))....(((((..]....)))))))))))..... Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site; tRNAfMet 5ibb 3L 71 2.96 RF00005 URS000009F4BF_83333 27174928 0030533 0006412 83333 gggugauuagcucagagagcaccucccuuacaaggagggggucggcgguucgaucccgucaucacccacca <<<<<<<..<<<<...>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... ((((.((..((((...)))).(((((.......)))).)....(...............))).)))).... Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site; tRNAVal 5imq 4 77 3.8 RF00005 URS000041AF00_1412515 27137929 0030533 0006412 1412515 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(.(((..]....))).)))))))..... Structure of ribosome bound to cofactor at 3.8 angstrom resolution; P- site tRNA 5imq 5 76 3.8 RF00005 URS00005AA258_1412515 27137929 0030533 0006412 1412515 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<....<<<........>>>..<<<<<<.....>>>>>>.....<<<<.........>>>>.>>>>>>.... (((((....((((........)))).((((.........))))......((((.......))))...))))).... Structure of ribosome bound to cofactor at 3.8 angstrom resolution; E site tRNA 5imr 4 77 5.7 RF00005 URS000041AF00_1412515 27137929 0030533 0006412 1412515 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....((.((..]....)).))))))))..... Structure of ribosome bound to cofactor at 5.7 angstrom resolution; P site- tRNA 5imr 5 76 5.7 RF00005 URS00005AA258_1412515 27137929 0030533 0006412 1412515 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<...<<<..........>>>.<<<<<<.....>>>>>>.......<<<.......>>>..>.>>>>>.... ((.(((...((((........)))).((((.(.....).))))......((((.......))))..))).)).... Structure of ribosome bound to cofactor at 5.7 angstrom resolution; E site- tRNA 5iqr 4 76 3.0 RF00005 URS00005AA258_83333 27279228 0030533 0006412 83333 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca .<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((....((((........)))).((((.........)))).....(((((.......)))))..))))..... Structure of RelA bound to the 70S ribosome; E-site tRNA(Phe) 5iqr 5 77 3.0 RF00005 URS0000A76396_83333 27279228 0030533 0006412 83333 cgcggggungagcagccuggnagcucgucgggnucauaacccgaagaucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(.(((..]....))).)))))))..... Structure of RelA bound to the 70S ribosome; P-site fMet-tRNA(fMet) 5iqr 6 76 3.0 RF00005 URS000024E9F9_83333 27279228 0030533 0006412 83333 gcccgganagcucagnuggnagagcaggggauugaanauccccgunnccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>><<<<<<<.....>>>>>>.>...<<<<<.......>>>>>>>>>>>>.... (((((((..((((........))))((((((.......))))).)...(((((.......)))))))))))).... Structure of RelA bound to the 70S ribosome; A/T tRNA(Phe) 5j01 A 414 3.39 RF02001,RF01998 URS0000B21DD4_182710 27934709 0000373 182710 gugugcccggcaugggugcagucuauagggugagagucccgaacugugaaggcagaaguaacaguuagccuaacgcaacugcgccguggcgacauggcgugggaaggaagcggacggcaaaccuucggucugaggaacacgaacuucauaugaggcuagguaucaauggaugaguuugcauaacaaaacaaaguccuuucugccaaaguugguacagaguaaaugaagcagauugaugaagggaaagacugcauucuuacccggggaggucuggaaacagaagucagcagaagucauaguacccuguucgcaggggaaggacggaacaaguauggcguucgcgccuaagcuugaaccgccguauaccgaacgguacguacggugguguggcaggggcgcgcccccuaugccgau .....<<<<<...<<<<<<<<<<<...<<<.......>>>..<<<<<...(((((((...>>>>>..<<<...<<<..<<<<<<<<<<....>>>>>>>>>>.......>>>...>>>...<<<<<<<<<<<...........<<<<<......<<<..<<<<<<<<<<<<..<<<<........>>>>...>>>>.)))))))...>>>>>>>>..>>>...>>>>>>>>>>...>>>>>>...>>>>>>>>>>>....>>>>>....<<<<....>>>>...........<<<......<<<<<....>>>>>....>>>....<<<<<..<<<<....>>>>...>>>>>.<<<<<<<<<<<<<....>>>..>>>>>>>>>>..<<<<<<<..<..>.>>>>..>>>... ..[<.((((({..(((((((((((...(((.......)))..(((((...[[[[[[[...)))))..(((...(((..((((((((((....))))))))))...>}..)))...)))...(((((((((((.(.....)...(((((.....[(((..((((((((((((..((((.]......))))...)))).]]]]]]]...))))))))..)))...))))))))))...))))))...)))))))))))...])))))(...((((....))))...)(......(((.(....(((((....)))))...))))....(((((.(((((....))))..)))))).(((((((((((((....)))..))))))))))..((((((((.(()))))))..)))..) Structure of the lariat form of a chimeric derivative of the Oceanobacillus iheyensis group II intron in the presence of NH4+ and MG2+.; group II intron lariat 5j02 A 414 3.493 RF02001,RF01998 URS0000B21DD4_182710 27934709 0000373 182710 gugugcccggcaugggugcagucuauagggugagagucccgaacugugaaggcagaaguaacaguuagccuaacgcaacugcgccguggcgacauggcgugggaaggaagcggacggcaaaccuucggucugaggaacacgaacuucauaugaggcuagguaucaauggaugaguuugcauaacaaaacaaaguccuuucugccaaaguugguacagaguaaaugaagcagauugaugaagggaaagacugcauucuuacccggggaggucuggaaacagaagucagcagaagucauaguacccuguucgcaggggaaggacggaacaaguauggcguucgcgccuaagcuugaaccgccguauaccgaacgguacguacggugguguggcaggggcgcgcccccuaugccgau .....<<<<<...<<<<<<<<<<<...<<<.......>>>..<<<<<...(((((((...>>>>>..<<<...<<<..<<<<<<<<<<....>>>>>>>>>>.......>>>...>>>...<<<<<<<<<<<...........<<<<<......<<<..<<<<<<<<<<<<..<<<<........>>>>...>>>>.)))))))...>>>>>>>>..>>>...>>>>>>>>>>...>>>>>>...>>>>>>>>>>>....>>>>>....<<<<....>>>>...........<<<......<<<<<....>>>>>....>>>....<<<<<..<<<<<..>>>>>...>>>>>.<<<<<<<<<<<<<....>>>..>>>>>>>>>>..<<<<<<<<.<..>>>>>>..>>>... ..[<.((((({..(.(((((((((...(((.......)))..(((((...[[[[[[[...)))))..(((...(((..((((((((((....))))))))))...>}..)))...)))...(((((((((((.(.....)...(((((.....[(((..((((((((((((..((((.]......))))...)))).]]]]]]]...))))))))..)))...))))))))))...))))))...))))))))).)...])))))(...((((....))))...)(......(((.(....(((((....)))))...))))....(((((.(((((....))))..)))))).(((((((((((((....)))..))))))))))..((((((((.(()))))))..)))..) Structure of the lariat form of a chimeric derivative of the Oceanobacillus iheyensis group II intron in the presence of NH4+, MG2+ and an inactive 5' exon.; GROUP II INTRON LARIAT 5j30 QV 77 3.2 RF00005 URS000041AF00_1355101 27681416 0030533 0006412 1355101 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(.(((..]....))).)))))))..... Thermus thermophilus 70S termination complex containing E. coli RF1; P-site tRNA fMet 5j30 XV 77 3.2 RF00005 URS000041AF00_1355101 27681416 0030533 0006412 1355101 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Thermus thermophilus 70S termination complex containing E. coli RF1; P-site tRNA fMet 5j3c QV 77 3.04 RF00005 URS000041AF00_1355101 27681416 0030533 0006412 1355101 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Thermus thermophilus 70S termination complex containing E. coli RF1; P-site tRNA fMet 5j3c XV 77 3.04 RF00005 URS000041AF00_1355101 27681416 0030533 0006412 1355101 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Thermus thermophilus 70S termination complex containing E. coli RF1; P-site tRNA fMet 5j4b 1w 74 2.6 RF00005 URS00005AA258_562 27079977 0030533 0006412 562 gcccgganagcucaggguagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<......>>>><<<<<<<.....>>>>>>.>...<<<<<.......>>>>>>>>>>>>.... (((((((..((((...[..)))).((((.........)))).....(((((..]....)))))))))))).... Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution; A-site and E-site tRNAs 5j4b 1x 76 2.6 RF00005 URS000041AF00_562 27079977 0030533 0006412 562 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution; P-site tRNA 5j4b 1y 74 2.6 RF00005 URS00005AA258_562 27079977 0030533 0006412 562 gcccgganagcucaggguagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<......>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((......)))).((((.........)))).....(((((.......)))))))))))).... Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution; A-site and E-site tRNAs 5j4b 2w 72 2.6 RF00005 URS00005AA258_562 27079977 0030533 0006412 562 cccgganagcucagggagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<..<<<<.....>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((...[.)))).((((.........))))......((((..]....)))).))))))..... Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution; A-site and E-site tRNAs 5j4b 2x 76 2.6 RF00005 URS000041AF00_562 27079977 0030533 0006412 562 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(.(((..]....))).)))))))..... Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution; P-site tRNA 5j4b 2y 73 2.6 RF00005 URS00005AA258_562 27079977 0030533 0006412 562 gcccgganagcucagggagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<.....>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((...[.)))).((((.........)))).....(((((..]....)))))))))))).... Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution; A-site and E-site tRNAs 5j4c 1w 74 2.8 RF00005 URS00005AA258_562 27079977 0030533 0006412 562 gcccgganagcucaggguagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<......>>>><<<<<<<.....>>>>>>.>...<<<<<.......>>>>>>>>>>>>.... (((((((..((((...[..)))).((((.........)))).....(((((..]....)))))))))))).... Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (soaked) and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolution; A-site and E-site tRNAs 5j4c 1x 76 2.8 RF00005 URS000041AF00_562 27079977 0030533 0006412 562 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (soaked) and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolution; P-site tRNA 5j4c 1y 74 2.8 RF00005 URS00005AA258_562 27079977 0030533 0006412 562 gcccgganagcucaggguagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<......>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((......)))).((((.........)))).....(((((.......)))))))))))).... Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (soaked) and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolution; A-site and E-site tRNAs 5j4c 2w 72 2.8 RF00005 URS00005AA258_562 27079977 0030533 0006412 562 cccgganagcucagggagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<..<<<<.....>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((...[.)))).((((.........))))......((((..]....)))).))))))..... Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (soaked) and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolution; A-site and E-site tRNAs 5j4c 2x 76 2.8 RF00005 URS000041AF00_562 27079977 0030533 0006412 562 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (soaked) and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolution; P-site tRNA 5j4c 2y 73 2.8 RF00005 URS00005AA258_562 27079977 0030533 0006412 562 gcccgganagcucagggagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<.....>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....)))).((((.........)))).....(((((.......)))))))))))).... Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (soaked) and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolution; A-site and E-site tRNAs 5j4d D 77 3.1 RF00005 URS000041AF00_83333 27107638 0030533 0006412 83333 cgcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((.(((..(((.......[...))).(((((.......))))).....(.(((..]....))).)))).))..... E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon; tRNA 5j4d IA 77 3.1 RF00005 URS000041AF00_83333 27107638 0030533 0006412 83333 cgcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon; tRNA 5j4d IB 77 3.1 RF00005 URS000041AF00_83333 27107638 0030533 0006412 83333 cgcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((.(((..(((.......[...))).(((((.......))))).....(.(((..]....))).)))).))..... E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon; tRNA 5j4d NC 77 3.1 RF00005 URS000041AF00_83333 27107638 0030533 0006412 83333 cgcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon; tRNA 5j8b w 74 2.6 RF00005 URS00005AA258_300852 27092003 0030533 0006412 300852 gcccgganagcucaggguagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<......>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (.(((((..((((...[..)))).((((.........)))).....(((((..]....)))))))))).).... Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome; A-site tRNA 5j8b x 77 2.6 RF00005 URS000041AF00_300852 27092003 0030533 0006412 300852 cgcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome; P-site tRNA 5j8b y 74 2.6 RF00005 URS00005AA258_300852 27092003 0030533 0006412 300852 gcccgganagcucaggguagagcaggggauugaanauccccguguccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<......>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((...[..)))).((((.........)))).....(((((..]....)))))))))))).... Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome; E-site tRNA 5jb3 4 76 5.34 RF00005 URS0000A76384_562 27819266 0030533 0006412 562 gcgggguggagcagccuggnagcucgucgggnucauaacccgaagaucgucggnucaaauccggcccccgcuacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Cryo-EM structure of a full archaeal ribosomal translation initiation complex in the P-REMOTE conformation; initiator Met-tRNA fMet from E. coli (A1U72 variant) 5jbh 4 76 5.34 RF00005 URS0000A76384_562 27819266 0030533 0006412 562 gcgggguggagcagccuggnagcucgucgggnucauaacccgaagaucgucggnucaaauccggcccccgcuacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Cryo-EM structure of a full archaeal ribosomal translation initiation complex in the P-IN conformation; initiator Met-tRNA fMet from E. coli (A1U72 variant) 5jpq 3 164 7.3 RF01846,RF01848 URS0000A76383_209285 27419870 0006396 0005730 209285 ccacagaucccacccggguugaugaacgagauccucggcgcacagugagguuacucucgcucuaccugcaaagguggcggucgcgugccucgucucgcggcuguauagagaguggcgaugaucuguaccccggcggggugggugucgauggaagucugaccggc .............<<<<....<.........<<.<<<....<<.<......<<<<<<.....<<<<......>>>>..<<<<<<<.<......>.>>>>>>>......>>>>>>.......>..>..<<<<...>>>>....>..>>>..>>....>..>>>>. .............((((...............(((((.(.............((((((....(((((....))))).((((((((.(......).))))))))....)))))).............((((((.))))))....).))).))........)))). Cryo-EM structure of the 90S pre-ribosome; U3 RNA 5jte AW 74 3.6 RF00005 URS00021ED9A1_562 27380950 0030533 0006412 562 gggucgunagcucaggguagagcaguugacunuunaucaauugnncgcaggnucgaauccugcacgacccacca <<<<<<<..<<<<......>>>><<<<<<.......>>>>>>....<<<<<.......>>>>>>>>>>>>.... (((((((..((((...[..))))(((((.........)))))....(((((..]....)))))))))))).... Cryo-EM structure of an ErmBL-stalled ribosome in complex with A-, P-, and E-tRNA; A-site Lysine tRNA Lysine 5jte AX 77 3.6 RF00005 URS000009EE82_562 27380950 0030533 0006412 562 ggagcggnaguucagucgguuagaauaccugccunucncgcaggggnucgcgggnucgagucccguccguuccgcca <<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((.(((..((((.........)))).(((((.......))))).....(((((.......)))))))).))).... Cryo-EM structure of an ErmBL-stalled ribosome in complex with A-, P-, and E-tRNA; P-site tRNA Aspartate 5jte AY 71 3.6 RF00005 URS0000E60BC5_562 27380950 0030533 0006412 562 gggugaunagcucaggggagagcaccucccunacnaggaggggnucggcggnucgaucccgucaucaccca <<<<<<<..<<<<......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>. (((((((..((((......)))).(((((.......))))).....(((((.......)))))))))))). Cryo-EM structure of an ErmBL-stalled ribosome in complex with A-, P-, and E-tRNA; E-site tRNA Valine 5ju8 AX 77 3.6 RF00005 URS000009EE82_83333 27380950 0030533 0006412 83333 ggagcggnaguucagncggnnagaauaccugccunucncgcaggggnucgcgggnucgagucccguccguuccgcca <<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((.(((..((((.........)))).(((((.......))))).....(((((.......)))))))).))).... Cryo-EM structure of an ErmBL-stalled ribosome in complex with P-, and E-tRNA; P-site tRNA Aspartate 5ju8 AY 71 3.6 RF00005 URS0000E60BC5_83333 27380950 0030533 0006412 83333 gggugaunagcucaggggagagcaccucccunacnaggaggggnucggcggnucgaucccgucaucaccca <<<<<<<..<<<<......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>. (((((((..((((......)))).(((((.......))))).....(((((.......)))))))))))). Cryo-EM structure of an ErmBL-stalled ribosome in complex with P-, and E-tRNA; E-site tRNA Valine 5k0y N 75 5.8 RF00005 URS0000326EAC_9986 27373335 0030533 0006412 9986 agcagaguggcgcagcggaagcgugcugggcccauaacccagaggucgauggaucgaaaccauccucugcuacca .<.<<<...<<<.........>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>.>>>.>..... (..((((..(((.........))).(((((.......))))).....(((((.......)))))))))..).... m48S late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eIF2 ternary complex and eIF3 i and g subunits relocated to the intersubunit face; tRNA 5kcr 1x 87 3.6 RF00005 URS00004630EA_83333 27330110 0030533 0006412 83333 gccgaggugguggaauugguagacacgcuaccuugaggugguagugcccaauagggcuuacggguucaagucccguccucgguacca <<<<<<<..<<<...........>>><<<<<<.......>>>>>><<<......>>>..<<<<<.......>>>>>>>>>>>>.... (((((((..(((......[....))).(((((.......))))).(((......)))..(((((..]....)))))))))))).... Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Avilamycin C, mRNA and P-site tRNA at 3.6A resolution; P-site tRNA 5kcs 1x 73 3.9 RF00005 URS00000FF435_83333 27330110 0030533 0006412 83333 aggcuuguagcucagggagagcgcaccccugauaagggugagnucgguggnucaaguccacucaggccuacca <<<<<<<..<<<<.....>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... .(((.....((((.....)))).(((((.......)))))........((.......))......)))..... Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Evernimycin, mRNA, TetM and P-site tRNA at 3.9A resolution; P-site tRNA 5kh8 A 47 NA RF01734 URS0000BC4686_32630 28719589 0010628,1902617 32630 ggcgaugguguucgccauaaacgcucuucggagcuaaugacaccuac ((((..<<<<<<))))......<<<<....>>>>....>>>>>>... [[[[..((((((]]]]......((((....))))....))))))... Solution structures of the apo state fluoride riboswitch; riboswitch (47-MER) 5kps 31 77 3.9 RF00005 URS000041AF00_83333 27434674 0030533 0006412 83333 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I); P site tRNAfmet 5kps 32 77 3.9 RF00005 URS00001BBAFC_83333 27434674 0030533 0006412 83333 cgcgggguggagcagccugguagcucgucgggcucauaacccgaagaucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))..... Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I); E-site tRNAfMet 5kpv 30 76 4.1 RF00005 URS00005AA258_83333 27434674 0030533 0006412 83333 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<.........>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((........)))).(((((.......))))).....((.((.......)).))))))))).... Structure of RelA bound to ribosome in presence of A/R tRNA (Structure II); A-site tRNAPhe 5kpv 31 77 4.1 RF00005 URS000041AF00_83333 27434674 0030533 0006412 83333 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Structure of RelA bound to ribosome in presence of A/R tRNA (Structure II); P-site tRNAfMet 5kpv 32 77 4.1 RF00005 URS00001BBAFC_83333 27434674 0030533 0006412 83333 cgcgggguggagcagccugguagcucgucgggcucauaacccgaagaucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))..... Structure of RelA bound to ribosome in presence of A/R tRNA (Structure II); E-site tRNAfMet 5kpw 30 76 3.9 RF00005 URS00005AA258_83333 27434674 0030533 0006412 83333 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))).... Structure of RelA bound to ribosome in presence of A/R tRNA (Structure III); A-site tRNAPhe 5kpw 31 77 3.9 RF00005 URS000041AF00_83333 27434674 0030533 0006412 83333 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))..... Structure of RelA bound to ribosome in presence of A/R tRNA (Structure III); P-site tRNAfMet 5kpw 32 77 3.9 RF00005 URS00001BBAFC_83333 27434674 0030533 0006412 83333 cgcgggguggagcagccugguagcucgucgggcucauaacccgaagaucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((.(......[..).)).(((((.......))))).....(((((..]....)))))))))))..... Structure of RelA bound to ribosome in presence of A/R tRNA (Structure III); E-site tRNAfMet 5kpx 30 76 3.9 RF00005 URS00005AA258_83333 27434674 0030533 0006412 83333 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>><<<<<<<.....>>>>>>.>...<<<<<.......>>>>>>>>>>>>.... (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))).... Structure of RelA bound to ribosome in presence of A/R tRNA (Structure IV); A-site tRNAPhe 5kpx 31 77 3.9 RF00005 URS000041AF00_83333 27434674 0030533 0006412 83333 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Structure of RelA bound to ribosome in presence of A/R tRNA (Structure IV); P-site tRNAfMet 5kpx 32 77 3.9 RF00005 URS00001BBAFC_83333 27434674 0030533 0006412 83333 cgcgggguggagcagccugguagcucgucgggcucauaacccgaagaucgucgguucaaauccggcccccgcaacca .<<<<<<..<..............>..<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((........[....)).(((((.......))))).....(((((..]....)))))))))))..... Structure of RelA bound to ribosome in presence of A/R tRNA (Structure IV); E-site tRNAfMet 5l3p x 77 3.7 RF00005 URS00001BBAFC_83333 27226493 0030533 0006412 83333 cgcggggnggagcagccuggnagcucgucgggcucauaacccgaagaucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Cryo-EM structure of stringent response factor RelA bound to ErmCL-stalled ribosome complex; P-site tRNA 5l3p y 73 3.7 RF00005 URS0000A76379_83333 27226493 0030533 0006412 83333 gcugauauagcucagnnggnagagcgcacccuuggugagggugagnucggcagnucgaaucugccuaucagca .<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<.........>>>>>>>>>>.. .((((.(..(((......[...))).(((((.......))))).....(((....]......)))).)))).. Cryo-EM structure of stringent response factor RelA bound to ErmCL-stalled ribosome complex; deacylated A/R-tRNA 5l4o A 76 2.799 RF00005 URS0000B21E07_562 28143889 0030533 0006412 562 agcggggnggagcagccuggnagcucgucgggnucauaacccgaagaucgucggnucaaauccggcccccgcuacc <<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>... .((((((..((((......[..)))).(((((.......))))).....(((((..]....))))))))))).... Structure of an E.coli initiator tRNAfMet A1-U72 variant; tRNA (76-MER) 5lj3 U 141 3.8 RF00020 URS0000514318_4932 27459055 0000244,0000353 0005682,0046540 4932 cagcuuuacagaucaauggcggagggaggucaacaucaagaacugugggcgccuauagaacuuauaacgaacaugguucuugccuuuuaccagaaccauccggguguugucuccauagaaacagguaaagcuguauuuuuu <<<<<<<<<.......<.......<<<<<.<<<<<<<.....<<<<<<<..>>>>>>>..............<<<<<<<<...........>>>>>>>>...>>>>>>>>>>>>......>...>>>>>>>>>........ (((((((((.......(.......(((((.(((((((.....(((((((()))))))).........((...((((((((.(.......).)))))))).))))))))))))))......)...)))))))))........ Structure of the core of the yeast spliceosome immediately after branching; U5 snRNA (small nuclear RNA) 5lj3 Z 171 3.8 RF00004 URS000023C730_4932 27459055 0045131 0000348 0005686 4932 gaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuguaacaacugaaaugaccuaggcucauuguuacaauacacauuuuuuggggacgggaagaggagacgucgcgacccucgcagagucguucuugacuuggucgcuugauguuucuucuucccguuc .............................................<<<<<<<<......<<<<<<>>>.>>>>>>>>>>>...............<<<<<<<<<<<.<<<<<<<<<<<<.<<.....<<<<<<....>>>>>>>>>>>>..>>>>>>>>.>>>>>>>>>>> .............................................((((((((......(((((())).)))))))))))...............(((((((((((.((((((((((((.((......(((((....))))).))))))..)))))))).))))))))))) Structure of the core of the yeast spliceosome immediately after branching; U2 snRNA (small nuclear RNA) 5lj3 V 97 3.8 RF00026 URS00006184A9_4932 27459055 0030621 0000244,0000353 0005688,0046540 4932 guucgcgaagcuucguggacauuuggucaauuugaaacaauacagagaugaucagcaguuccccugcauaaggaugaaccguuuuacaaagagauuu <<<<<<<<<..>>>>>>>>>.....................................<<<..<<<.....>>>...>>>.................. (((((((((()))))))))).....................................(((.((((.....)))..)))).................. Structure of the core of the yeast spliceosome immediately after branching; U6 snRNA (small nuclear RNA) 5lj5 U 141 10.0 RF00020 URS0000514318_4932 27459055 0000244,0000353 0005682,0046540 4932 cagcuuuacagaucaauggcggagggaggucaacaucaagaacugugggcgccuauagaacuuauaacgaacaugguucuugccuuuuaccagaaccauccggguguugucuccauagaaacagguaaagcuguauuuuuu <<<<<<<<<.......<.......<<<<<.<<<<<<<.....<<<<<<<..>>>>>>>..............<<<<<<<<...........>>>>>>>>...>>>>>>>>>>>>......>...>>>>>>>>>........ (((((((((.......(.......(((((.(((((((.....(((((((()))))))).........((...((((((((.(.......).)))))))).))))))))))))))......)...)))))))))........ Overall structure of the yeast spliceosome immediately after branching.; U5 snRNA (small nuclear RNA) 5lj5 Z 171 10.0 RF00004 URS000023C730_4932 27459055 0045131 0000348 0005686 4932 gaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuguaacaacugaaaugaccuaggcucauuguuacaauacacauuuuuuggggacgggaagaggagacgucgcgacccucgcagagucguucuugacuuggucgcuugauguuucuucuucccguuc .............................................<<<<<<<<......<<<<<<>>>.>>>>>>>>>>>...............<<<<<<<<<<<.<<<<<<<<<<<<.<<.....<<<<<<....>>>>>>>>>>>>..>>>>>>>>.>>>>>>>>>>> .............................................((((((((......(((((())).)))))))))))...............(((((((((((.((((((((((((.((......(((((....))))).))))))..)))))))).))))))))))) Overall structure of the yeast spliceosome immediately after branching.; U2 snRNA (small nuclear RNA) 5lj5 V 97 10.0 RF00026 URS00006184A9_4932 27459055 0030621 0000244,0000353 0005688,0046540 4932 guucgcgaagcuucguggacauuuggucaauuugaaacaauacagagaugaucagcaguuccccugcauaaggaugaaccguuuuacaaagagauuu <<<<<<<<<..>>>>>>>>>.....................................<<<..<<<.....>>>...>>>.................. (((((((((()))))))))).....................................(((.((((.....)))..)))).................. Overall structure of the yeast spliceosome immediately after branching.; U6 snRNA (small nuclear RNA) 5lmq Z 77 4.2 RF00005 URS000041AF00_562 27662086 0030533 0006412 562 cgcggggnggagcagccugguagcucgucgggnucauaacccgaagnucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(.((...].....)).)))))))..... Structure of bacterial 30S-IF1-IF3-mRNA-tRNA translation pre-initiation complex, open form (state-2A); tRNA 5lmr Z 77 4.45 RF00005 URS000041AF00_300852 27662086 0030533 0006412 300852 cgcggggnggagcagccugguagcucgucgggnucauaacccgaagnucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))..... Structure of bacterial 30S-IF1-IF3-mRNA-tRNA translation pre-initiation complex(state-2B); tRNAi 5lms Z 77 5.1 RF00005 URS000041AF00_562 27662086 0030533 0006412 562 cgcggggnggagcagccugguagcucgucgggnucauaacccgaagnucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(.(((..]....))).)))))))..... Structure of bacterial 30S-IF1-IF3-mRNA-tRNA translation pre-initiation complex(state-2C); tRNAi 5lmt Z 77 4.15 RF00005 URS000041AF00_300852 27662086 0030533 0006412 300852 cgcggggnggagcagccugguagcucgucgggnucauaacccgaagnucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Structure of bacterial 30S-IF1-IF3-mRNA-tRNA translation pre-initiation complex(state-3); tRNAi 5lmu Z 77 4.0 RF00005 URS000041AF00_562 27662086 0030533 0006412 562 cgcggggnggagcagccugguagcucgucgggnucauaacccgaagnucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Structure of bacterial 30S-IF3-mRNA-tRNA translation pre-initiation complex, closed form (state-4); tRNAi 5lmv Z 77 4.9 RF00005 URS000041AF00_562 27662086 0030533 0006412 562 cgcggggnggagcagccugguagcucgucgggnucauaacccgaagnucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Structure of bacterial 30S-IF1-IF2-IF3-mRNA-tRNA translation pre-initiation complex(state-III); tRNAi 5lqw 2 81 5.8 RF00004 URS000023C730_4932 27562955 0045131 0000348 0005686 4932 gaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuuucaguguaacaacugaaaugaccucaaugaggcu ...............................................<<<<<......>>>>>.....<<<<...>>>>.. ...............................................(((((......))))).....(((.....))).. yeast activated spliceosome; U2 snRNA 5lqw 5 141 5.8 RF00020 URS0000514318_4932 27562955 0000244,0000353 0005682,0046540 4932 cagcuuuacagaucaauggcggagggaggucaacaucaagaacugugggcgccuauagaacuuauaacgaacaugguucuugccuuuuaccagaaccauccggguguugucuccauagaaacagguaaagcuguauuuuuu <<<<<<<<<.......<.......<<<<<.<<<<<<.<<<..<<<<<<<..>>>>>>>..>>>.........<<<<<<<<...........>>>>>>>>....>>>>>>>>>>>......>...>>>>>>>>>........ (((((((((.......(.......(((((.(((((.((((..((((.((())).))))..))).....(...((((((((...........)))))))).).).))))))))))......)...)))))))))........ yeast activated spliceosome; U5 snRNA 5lqw 6 102 5.8 RF00026 URS00006184A9_4932 27562955 0030621 0000244,0000353 0005688,0046540 4932 guucgcgaaguaacccuucguggacauuuggucaauuugaaacaauacagagaugaucagcaguuccccugcauaaggaugaaccguuuuacaaagagauuu ...<<<<<<<.....>>>>>>>..............................................<<.....>>......................... ...(((((((.....))))))).........................................(..(.((.....).)..).)................... yeast activated spliceosome; U6 snRNA 5lza v 77 3.6 RF00005 URS00001BBAFC_562 27842381 0030533 0006412 562 cgcggggnggagcagccuggnagcucgucgggcucauaacccgaagaucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Structure of the 70S ribosome with SECIS-mRNA and P-site tRNA (Initial complex, IC); fMet-tRNAfMet 5lza x 48 3.6 RF01988 27842381 0001514 562 aaggagguucauuaaugugacacggcccaucgguugcaggucugcacc ...............................<<.<<<<....>>>>>> ..................................((((....)))).. Structure of the 70S ribosome with SECIS-mRNA and P-site tRNA (Initial complex, IC); SECIS mRNA 5lzb v 77 5.3 RF00005 URS00001BBAFC_562 27842381 0030533 0006412 562 cgcggggnggagcagccuggnagcucgucgggcucauaacccgaagaucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the initial binding state (IB); fMet-tRNAfMet 5lzb x 48 5.3 RF01988 27842381 0001514 562 aaggagguucauuaaugugacacggcccaucgguugcaggucugcacc ...............................<<.<<<<....>>>>>> ...............................((.(((((..))))))) Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the initial binding state (IB); SECIS mRNA 5lzb y 95 5.3 RF01852 URS00002F9CDD_562 27842381 0030533 0006412 562 ggaagaucgucgucuccggngaggcggcuggacuucanauccaguuggggccgccagcggucccgggcaggnucgacuccugugaucuuccgcca <<<<<<<<..<<<<<<....>>>>>><<<<<.........>>>>>.<<<<<<<....>>>>>>>..<<<<<.......>>>>>>>>>>>>>.... ((((((((..((((((..[.))))))((((((.......)))))).(((((((....)))))))..(((((..]....))))))))))))).... Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the initial binding state (IB); Sec-tRNASec 5lzc v 77 4.8 RF00005 URS00001BBAFC_562 27842381 0030533 0006412 562 cgcggggnggagcagccuggnagcucgucgggcucauaacccgaagaucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the codon reading state (CR); fMet-tRNAfMet 5lzc x 48 4.8 RF01988 27842381 0001514 562 aaggagguucauuaaugugacacggcccaucgguugcaggucugcacc ...............................<<.<<<<....>>>>>> ...............................((.(((((..))))))) Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the codon reading state (CR); SECIS mRNA 5lzc y 95 4.8 RF01852 URS00002F9CDD_562 27842381 0030533 0006412 562 ggaagaucgucgucuccggngaggcggcuggacuucanauccaguuggggccgccagcggucccgggcaggnucgacuccugugaucuuccgcca <<<<<<<<..<<<<<<....>>>>>><<<<<.........>>>>>.<<<<<<<....>>>>>>>..<<<<<.......>>>>>>>>>>>>>.... ((((((((..((((((..[.))))))((((((.......)))))).(((((((....)))))))..(((((..]....))))))))))))).... Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the codon reading state (CR); Sec-tRNASec 5lzd v 77 3.4 RF00005 URS00001BBAFC_562 27842381 0030533 0006412 562 cgcggggnggagcagccuggnagcucgucgggcucauaacccgaagaucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the GTPase activated state (GA); fMet-tRNAfMet 5lzd x 48 3.4 RF01988 27842381 0001514 562 aaggagguucauuaaugugacacggcccaucgguugcaggucugcacc ...............................<<.<<<<....>>>>>> ...............................((.(((((..))))))) Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the GTPase activated state (GA); SECIS mRNA 5lzd y 95 3.4 RF01852 URS00002F9CDD_562 27842381 0030533 0006412 562 ggaagaucgucgucuccggngaggcggcuggacuucanauccaguuggggccgccagcggucccgggcaggnucgacuccugugaucuuccgcca <<<<<<<<..<<<<<<....>>>>>><<<<<<.......>>>>>><<<<<<<<....>>>>>>>>.<<<<<.......>>>>>>>>>>>>>.... ((((((((..((((((..[.))))))((((((.......))))))((((((((....)))))))).(((((..]....))))))))))))).... Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the GTPase activated state (GA); Sec-tRNASec 5lze v 77 3.5 RF00005 URS00001BBAFC_562 27842381 0030533 0006412 562 cgcggggnggagcagccuggnagcucgucgggcucauaacccgaagaucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Structure of the 70S ribosome with Sec-tRNASec in the classical pre-translocation state (C); tRNAfMet 5lze x 48 3.5 RF01988 27842381 0001514 562 aaggagguucauuaaugugacacggcccaucgguugcaggucugcacc ..................................<<<<....>>>>.. ..................................(((((..))))).. Structure of the 70S ribosome with Sec-tRNASec in the classical pre-translocation state (C); SECIS mRNA 5lze y 95 3.5 RF01852 URS00002F9CDD_562 27842381 0030533 0006412 562 ggaagaucgucgucuccggngaggcggcuggacuucanauccaguuggggccgccagcggucccgggcaggnucgacuccugugaucuuccgcca <<<<<<<<..<<<<<<....>>>>>><<<<<<.......>>>>>><<<<<<<......>>>>>>>.<<<<<.......>>>>>>>>>>>>>.... ((((((((..((((((..[.))))))((((((.......))))))(((((((......))))))).(((((..]....))))))))))))).... Structure of the 70S ribosome with Sec-tRNASec in the classical pre-translocation state (C); fMetSec-tRNASec 5lzf v 77 4.6 RF00005 URS00001BBAFC_562 27842381 0030533 0006412 562 cgcggggnggagcagccuggnagcucgucgggcucauaacccgaagaucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Structure of the 70S ribosome with fMetSec-tRNASec in the hybrid pre-translocation state (H); tRNAfMet 5lzf x 48 4.6 RF01988 27842381 0001514 562 aaggagguucauuaaugugacacggcccaucgguugcaggucugcacc ..................................<<<<....>>>>.. ...................................((((..))))... Structure of the 70S ribosome with fMetSec-tRNASec in the hybrid pre-translocation state (H); SECIS mRNA 5lzf y 95 4.6 RF01852 URS00002F9CDD_562 27842381 0030533 0006412 562 ggaagaucgucgucuccggngaggcggcuggacuucanauccaguuggggccgccagcggucccgggcaggnucgacuccugugaucuuccgcca <<<<<<<<..<<<<<<....>>>>>><<<<<<.......>>>>>><<<<<<<......>>>>>>>.<<<<<.......>>>>>>>>>>>>>.... ((((((((..((((((..[.))))))((((((.......))))))((((((((....))))))))..((((..]....)))).)))))))).... Structure of the 70S ribosome with fMetSec-tRNASec in the hybrid pre-translocation state (H); fMetSec-tRNASec 5lzs 3 75 3.31 RF00005 URS000086855F_9986 27863242 0030533 0006412 9986 gcccggauagcucagcuguagagcaucagacuuuuaaucugaggguccaggguucaagucccuguucgggcgcca <<<<<<<..<<<<.......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... ((((.((..((((....[..)))).(((((.......))))).....(((((..]....))))))).)))).... Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin B; E-site tRNA 5lzt 3 75 3.65 RF00005 URS000086855F_9986 27863242 0030533 0006412 9986 gcccggauagcucagcuguagagcaucagacuuuuaaucugaggguccaggguucaagucccuguucgggcgcca <<<<<<<..<<<<.......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... ((((.((..((((....[..)))).(((((.......))))).....(((((..]....))))))).)))).... Structure of the mammalian ribosomal termination complex with eRF1 and eRF3.; E-site tRNA 5lzu 3 75 3.75 RF00005 URS000086855F_9986 27863242 0030533 0006412 9986 gcccggauagcucagcuguagagcaucagacuuuuaaucugaggguccaggguucaagucccuguucgggcgcca <<<<<<<..<<<<.......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... ((((.((..((((....[..)))).(((((.......))))).....(((((..]....))))))).)))).... Structure of the mammalian ribosomal termination complex with accommodated eRF1; E-site tRNA 5lzv 3 75 3.35 RF00005 URS000086855F_9986 27863242 0030533 0006412 9986 gcccggauagcucagcuguagagcaucagacuuuuaaucugaggguccaggguucaagucccuguucgggcgcca <<<<<<<..<<<<.......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... ((((.((..((((....[..)))).(((((.......))))).....(((((..]....))))))).)))).... Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.; E-site tRNA 5lzw 3 75 3.53 RF00005 URS000086855F_9986 27863242 0030533 0006412 9986 gcccggauagcucagcuguagagcaucagacuuuuaaucugaggguccaggguucaagucccuguucgggcgcca <<<<<<<..<<<<.......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... ((((.((..((((....[..)))).(((((.......))))).....(((((..]....))))))).)))).... Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA.; E-site tRNA 5lzx 3 75 3.67 RF00005 URS000086855F_9986 27863242 0030533 0006412 9986 gcccggauagcucagcuguagagcaucagacuuuuaaucugaggguccaggguucaagucccuguucgggcgcca <<<<<<<..<<<<.......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... ((((.((..((((....[..)))).(((((.......))))).....(((((..]....))))))).)))).... Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon.; E-site tRNA 5lzy 2 75 3.99 RF00005 URS000086855F_9986 27863242 0030533 0006412 9986 gcccggauagcucagcuguagagcaucagacuuuuaaucugaggguccaggguucaagucccuguucgggcgcca <<<<<<<..<<<<.......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... ((((.((..((((....[..)))).(((((.......))))).....(((((..]....))))))).)))).... Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA.; tRNA 5lzy 3 75 3.99 RF00005 URS000086855F_9986 27863242 0030533 0006412 9986 gcccggauagcucagcuguagagcaucagacuuuuaaucugaggguccaggguucaagucccuguucgggcgcca <<<<<<<..<<<<.......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... ((((.((..((((....[..)))).(((((.......))))).....(((((..]....))))))).)))).... Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA.; tRNA 5lzz 3 75 3.47 RF00005 URS000086855F_9986 27863242 0030533 0006412 9986 gcccggauagcucagcuguagagcaucagacuuuuaaucugaggguccaggguucaagucccuguucgggcgcca <<<<<<<..<<<<.......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... ((((.((..((((....[..)))).(((((.......))))).....(((((..]....))))))).)))).... Structure of the mammalian rescue complex with Pelota and Hbs1l (combined); E-site tRNA 5m1j A3 76 3.3 RF00005 URS000011107D_4932 27995908 0030533 0006412 4932 gcggauuuancucagnngggagagcnccaganunaanaunuggagnucnugugnucgnuccacagaauucgcacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).((((.........)))).....(((((..]....)))))))))))).... Nonstop ribosomal complex bound with Dom34 and Hbs1; yeast Phe-tRNA-Phe 5m73 A 145 3.4 RF00017,RF01856 URS0000A7784F_9606 27899666 0006617 0005786 9606 ngguguccgcacuaaguucggcaucaauauggugaccucccgggagcgggggaccaccagguugccuaaggaggggugaaccggcccaggucggaaacggagcaggucaaaacucccgugcugaucaguagugggaucgcgccua <<<<<<<<.<<<<<...<<<<<<<<<<<.<<<<<..<<<<<<....>>>>>>..>>>>>.>>>>........<<<<<.....<<<<....<<<....>>>....>>>>...>>>>>.>>>>>>>....>>>>>>>...>>>>>>. ((((((((.(((((.(.(((((((((((.(((((..((((((....))))))..))))).))))......(.((((......((((....(((....)))....))))....)))))))))))).)..)))))))...)))))). Structure of the human SRP S domain with SRP72 RNA-binding domain; Human gene for small cytoplasmic 7SL RNA (7L30.1) 5m73 E 145 3.4 RF00017,RF01856 URS0000A7784F_9606 27899666 0006617 0005786 9606 ngguguccgcacuaaguucggcaucaauauggugaccucccgggagcgggggaccaccagguugccuaaggaggggugaaccggcccaggucggaaacggagcaggucaaaacucccgugcugaucaguagugggaucgcgccua <<<<<<<<.<<<<<...<<<<<<.<<<<.<<<<<..<<<<<<....>>>>>>..>>>>>.>>>>........<<<<<.....<<<<....<<<....>>>....>>>>...>>>>>..>>>>>>....>>>>>>>...>>>>>>. .(((((((.((((..(.((((((.((((.(((((..((((((....))))))..))))).))))......(.((((......((((.....((....)).....))))....))))).)))))).)...))))))...))))).. Structure of the human SRP S domain with SRP72 RNA-binding domain; Human gene for small cytoplasmic 7SL RNA (7L30.1) 5mc6 m 76 3.8 RF00005 URS000042DDAB_559292 27980209 0030533 0006412 559292 gggucguuagcucaguugguagagcaguugacuuuuaaucaauuggucgcagguucgaauccugcacgacccacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((........))))..((((.......)))).......((((.......)))).))))))).... Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae; A-site tRNA 5mc6 n 77 3.8 RF00005 URS000009EE82_559292 27980209 0030533 0006412 559292 ggagcgguaguucagucgguuagaauaccugccugucacgcagggggucgcggguucgagucccguccguuccgcca <<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((.(((..((((.........)))).(((((.......)))))......((((.......)))).))).))).... Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae; P-site tRNA 5mdv 5 76 2.97 RF00005 URS0000B21DD1_562 27934701 0030533 0006412 562 gcggggungagcagccuggnagcucgucgggnucauaacccgaagaucgucggnucaaauccggcccccgcaaccn <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Structure of ArfA and RF2 bound to the 70S ribosome (accommodated state); fMet-NH-tRNA(fMet) 5mdw 5 76 3.06 RF00005 URS0000B21DD1_562 27934701 0030533 0006412 562 gcggggungagcagccuggnagcucgucgggnucauaacccgaagaucgucggnucaaauccggcccccgcaaccn <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Structure of ArfA(A18T) and RF2 bound to the 70S ribosome (pre-accommodated state); fMet-NH-tRNA(fMet) 5mdy 5 76 3.35 RF00005 URS0000B21DD1_562 27934701 0030533 0006412 562 gcggggungagcagccuggnagcucgucgggnucauaacccgaagaucgucggnucaaauccggcccccgcaaccn <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Structure of ArfA and TtRF2 bound to the 70S ribosome (pre-accommodated state); fMet-NH-tRNA(fMet) 5mdz 5 76 3.1 RF00005 URS0000B21DD1_562 27934701 0030533 0006412 562 gcggggungagcagccuggnagcucgucgggnucauaacccgaagaucgucggnucaaauccggcccccgcaaccn <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Structure of the 70S ribosome (empty A site); fMet-NH-tRNA(fMet) 5me0 X 77 13.5 RF00005 URS00001BBAFC_83333 27986852 0030533 0006412 83333 cgcggggnggagcagccuggnagcucgucgggcucauaacccgaagaucgucggnucaaauccggcccccgcaacca ..<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>...... ...((((..((((.........)))).(((((.......))))).....(((((.......)))))))))....... Structure of the 30S Pre-Initiation Complex 1 (30S IC-1) Stalled by GE81112; fMet-tRNA 5me1 X 77 13.5 RF00005 URS00001BBAFC_83333 27986852 0030533 0006412 83333 cgcggggnggagcagccuggnagcucgucgggcucauaacccgaagaucgucggnucaaauccggcccccgcaacca ..<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>...... ...((((..((((.........)))).(((((.......))))).....(((((.......)))))))))....... Structure of the 30S Pre-Initiation Complex 2 (30S IC-2) Stalled by GE81112; fMet-tRNA 5mgp x 77 3.1 RF00005 URS00001DEEBE_562 27906161 0030533 0006412 562 cggugauuggcgcagccugguagcgcacuucguucgggacgaaggggucggagguucgaauccucuaucaccgacca <<<<<<<..<<<<.........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))).... Structural basis for ArfA-RF2 mediated translation termination on stop-codon lacking mRNAs; P-site tRNA 5mmm z 76 3.4 RF00005 URS00005AA258_3562 28007896 0030533 0006412 3562 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).(((((.......))))).....(((((..]....)))))))))))).... Structure of the 70S chloroplast ribosome; tRNA-Phe 5mps 2 49 3.85 RF00004 URS000023C730_4932 28076345,26292705,26106855,26829225,27459055 0045131 0000348 0005686 4932 acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuu ................................................. ................................................. Structure of a spliceosome remodeled for exon ligation; U2 snRNA 5mps 6 99 3.85 RF00026 URS00006184A9_4932 28076345,26292705,26106855,26829225,27459055 0030621 0000244,0000353 0005688,0046540 4932 guucgcgaagcuucguggacauuuggucaauuugaaacaauacagagaugaucagcaguuccccugcauaaggaugaaccguuuuacaaagagauuuau <<<<<<<<<..>>>>>>>>>.....................................<<<..<<<.....>>>...>>>.................... (((((((((()))))))))).....................................(((.((((.....)))..)))).................... Structure of a spliceosome remodeled for exon ligation; Saccharomyces cerevisiae strain T.52_2H chromosome XII sequence 5mps 5 141 3.85 RF00020 URS0000514318_4932 28076345,26292705,26106855,26829225,27459055 0000244,0000353 0005682,0046540 4932 cagcuuuacagaucaauggcggagggaggucaacaucaagaacugugggcgccuauagaacuuauaacgaacaugguucuugccuuuuaccagaaccauccggguguugucuccauagaaacagguaaagcuguauuuuuu <<<<<<<<<.......<.......<<<<<.<<<<<<<.....<<<<<<<..>>>>>>>..............<<<<<<<<...........>>>>>>>>...>>>>>>>>>>>>......>...>>>>>>>>>........ (((((((((.......(.......(((((.(((((((.....(((((((()))))))).........((...((((((((.(.......).)))))))).))))))))))))))......)...)))))))))........ Structure of a spliceosome remodeled for exon ligation; U5 snRNA 5mq0 2 155 4.17 RF00004 URS000023C730_4932 28076345,26292705,26106855,26829225,27459055 0045131 0000348 0005686 4932 acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuuguaacaacugaaaugaccuaggcucauuguuacggacgggaagaggagacgucgcgacccucgcagucguucuugacuggucgcuugauguuucuucuucccguuc .................................................<<<<<<<......<<<<<<>>>.>>>>>>>>>><<<<<<<<<<<.<<<<<<<<<<<<.<<.....<<<<....>>>>.>>>>>>..>>>>>>>>.>>>>>>>>>>> .................................................(((((((......(((((())).))))))))))(((((((((((.((((((((((((.((.....((((....)))).))))))..)))))))).))))))))))) Structure of a spliceosome remodeled for exon ligation; S.cerevisiae chromosome II reading frame ORF YBR230c 5mq0 6 99 4.17 RF00026 URS00006184A9_4932 28076345,26292705,26106855,26829225,27459055 0030621 0000244,0000353 0005688,0046540 4932 guucgcgaagcuucguggacauuuggucaauuugaaacaauacagagaugaucagcaguuccccugcauaaggaugaaccguuuuacaaagagauuuau <<<<<<<<<..>>>>>>>>>.....................................<<<..<<<.....>>>...>>>.................... (((((((((()))))))))).....................................(((.((((.....)))..)))).................... Structure of a spliceosome remodeled for exon ligation; Saccharomyces cerevisiae strain T.52_2H chromosome XII sequence 5mq0 5 141 4.17 RF00020 URS0000514318_4932 28076345,26292705,26106855,26829225,27459055 0000244,0000353 0005682,0046540 4932 cagcuuuacagaucaauggcggagggaggucaacaucaagaacugugggcgccuauagaacuuauaacgaacaugguucuugccuuuuaccagaaccauccggguguugucuccauagaaacagguaaagcuguauuuuuu <<<<<<<<<.......<.......<<<<<.<<<<<<<.....<<<<<<<..>>>>>>>..............<<<<<<<<...........>>>>>>>>...>>>>>>>>>>>>......>...>>>>>>>>>........ (((((((((.......(.......(((((.(((((((.....(((((((()))))))).........((...((((((((.(.......).)))))))).))))))))))))))......)...)))))))))........ Structure of a spliceosome remodeled for exon ligation; Saccharomyces cerevisiae strain WI_C_MBSP_4 chromosome VII sequence 5mqf 2 140 5.9 RF00004 URS00003EE995_9606 28076346 0045131 0000348 0005686 9606 cgcuucucggccuuuuggcuaagaucaaguguaguaucuguucuuaucaguuuaauauauauuaaauggauuuuuggagcagggagauggaguccacuccacgcaucgaccugguauugcaguaccuccaggaacggugc ...................................................<<<<<<..>>>>>>.................<<<<.<<<<.>>>>>>>>..<<<<<<.<<<<<.............>>>>>..>>>>>> ...................................................((((((())))))).................((((.((((.))))))))..(((.((.(((((.............)))))..)).))) Cryo-EM structure of a human spliceosome activated for step 2 of splicing (C* complex); Human gene for small nuclear RNA U2 (snRNA U2) 5mqf 5 114 5.9 RF00020 URS0000118C49_9606 28076346 0000244,0000353 0005682,0046540 9606 acucugguuucucuucagaucgcauaaaucuuucgccuuuuacuaaagauuuccguggagaggaacaacucugagucuuaacccaauuuuuugagccuugccuuggcaaggcua .<<<...<<<<<<<<<<........<<<<<<<<...........>>>>>>>>...>>>>>>>>>>.......>>>..................<<<<<<<<....>>>>>>>>. .(((...((.((((.((........((((((((...........))))))))...)).)))).)).......)))..................((((((((....)))))))). Cryo-EM structure of a human spliceosome activated for step 2 of splicing (C* complex); Homo sapiens U5 A small nuclear RNA 5mqf 6 89 5.9 RF00026 URS000035C796_9606 28076346 0030621 0000244,0000353 0005688,0046540 9606 gugcucgcuucggcagcacauauacuaaacgauacagagaagauuagcauggccccugcgcaaggaugacacgcaaauucgugaagcgu <<<<<.<<....>>>>>>>..............................<<...<<<.....>>>....>>.................. (((((.((....)))))))..............................((..((((.....)))..).)).................. Cryo-EM structure of a human spliceosome activated for step 2 of splicing (C* complex); Homo sapiens RNA, U6 small nuclear 1 (RNU6-1), small nuclear RNA 5mrc bb 76 3.25 RF00005 URS0000B21DDE_4932 28154081 0030533 0006412 4932 ggcuacguagcucaguugguagagcacaucacucauaaugauggggucacagguucgaaucccgucguagccacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>......<.<<.......>>.>.>>>>>>>.... ((((((...(((..........))).(((((.......)))))......(.((.......)).)..)))))).... Structure of the yeast mitochondrial ribosome - Class A; tRNA 5mre bb 76 3.75 RF00005 URS0000B21DDE_4932 28154081 0030533 0006412 4932 ggcuacguagcucaguugguagagcacaucacucauaaugauggggucacagguucgaaucccgucguagccacca <<<<.<<..<<<<........>>>>.<<<<<.......>>>>>......<.<<.......>>.>.>>.>>>>.... ((((.((..(((..........))).(((((.......)))))......(.((.......)).).)).)))).... Structure of the yeast mitochondrial ribosome - Class B; tRNA 5mrf bb 76 4.97 RF00005 URS0000B21DDE_4932 28154081 0030533 0006412 4932 ggcuacguagcucaguugguagagcacaucacucauaaugauggggucacagguucgaaucccgucguagccacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>......<.<<.......>>.>.>>>>>>>.... (((((((..(((..........))).(((((.......)))))......(.((.......)).).))))))).... Structure of the yeast mitochondrial ribosome - Class C; tRNA 5nco 1 104 4.8 RF00169 URS0000BC46A7_562 28524878 0006617 0048501 562 ggcucuguugguucucccgcaacgcuacucuguuuaccaggucagguccggaaggaagcagccaaggcagaugacgcgugugccgggauguagcuggcagggcc <<<<<<<<<<<<<.<<<<<<<...<..<<<<<<<<....<<<....<<<....>>>....>>>.>>>>>>>.>..>....>>>.>>>>...>>>>>>>>>>>>> (((((((((((((((((((((...(...(((((((....(((....(((....)))....))).)))))))....)....))).)))).).))))))))))))) Quaternary complex between SRP, SR, and SecYEG bound to the translating ribosome; 4.5S SRP RNA (Ffs) 5ndj W1 76 3.15 RF00005 URS00005AA258_562 29208708 0030533 0006412 562 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))).... Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking); tRNA-Phe 5ndj X1 76 3.15 RF00005 URS00005AA258_562 29208708 0030533 0006412 562 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).(((((.......))))).....(((((..]....)))))))))))).... Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking); tRNA-Phe 5ndj V1 76 3.15 RF00005 URS00005AA258_562 29208708 0030533 0006412 562 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<<...>>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))).... Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking); tRNA-Phe 5ndj W4 76 3.15 RF00005 URS00005AA258_562 29208708 0030533 0006412 562 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).(((((.......))))).....(((((..]....)))))))))))).... Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking); tRNA-Phe 5ndj X4 76 3.15 RF00005 URS00005AA258_562 29208708 0030533 0006412 562 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).(((((.......))))).....(((((..]....)))))))))))).... Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking); tRNA-Phe 5ndj V4 76 3.15 RF00005 URS00005AA258_562 29208708 0030533 0006412 562 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))).... Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking); tRNA-Phe 5ndk W1 76 2.95 RF00005 URS00005AA258_562 29208708 0030533 0006412 562 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))).... Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA; tRNA-Phe 5ndk X1 76 2.95 RF00005 URS00005AA258_562 29208708 0030533 0006412 562 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).(((((.......))))).....(((((..]....)))))))))))).... Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA; tRNA-Phe 5ndk V1 76 2.95 RF00005 URS00005AA258_562 29208708 0030533 0006412 562 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<.<...>.>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))).... Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA; tRNA-Phe 5ndk W4 76 2.95 RF00005 URS00005AA258_562 29208708 0030533 0006412 562 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))).... Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA; tRNA-Phe 5ndk X4 76 2.95 RF00005 URS00005AA258_562 29208708 0030533 0006412 562 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).(((((.......))))).....(((((..]....)))))))))))).... Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA; tRNA-Phe 5ndk V4 76 2.95 RF00005 URS00005AA258_562 29208708 0030533 0006412 562 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))).... Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA; tRNA-Phe 5np6 B 76 3.6 RF00005 URS00008FED32_83333 28630923 0030533 0006412 83333 cggcacguagcgcagccgguagcgcaccgucaugccgugucgggggucggagguucaaauccucucgugccgacca <<<<<<<..<<<<........>>>>.<<<.<<.....>>.>>>.....<<<<<.......>>>>>>>>>>>>.... ((.((((..((((........)))).(((.(.......).)))........((.......))...)))).)).... 70S structure prior to bypassing; P-site tRNA-Gly 5nrl 2 155 7.2 RF00004 URS000023C730_4932 28530653 0045131 0000348 0005686 4932 gaaucucuuugaaguguaguaucuguucuuuucaguguaacaacugaaaugaccuaggcucauacacauuuuuuggcaggacgggaagaggagacgucgcgacccucgcacgagucguucuugacuuggucgcuugauguuucuucuucccguuc ..............................<<<<<<......>>>>>><<<<<<..>>.>>>>................<<<<<<<<<<.<<<<<<<<<<<<.<<......<<<<<<....>>>>>>>>>>>>..>>>>>>>>.>>>>>>>>>>. ..............................((((((......))))))((((((())).))))...............(.(((((((((.((((((((((((.((.......(((((....))))).))))))..)))))))).))))))))).) Structure of a pre-catalytic spliceosome; U2 snRNA 5nrl 4 114 7.2 RF00015 URS00001143F5_4932 28530653 0017070 0000244,0000353 0005687,0046540 4932 auccuuaugcacgggaaauacgcauaucagugaggauucguccgagauuguguuuuugcugguugaaauaauuauaacuccucauggucagacuauguagggaauuuuuggaau ...................<<<<<.<<<.....<<<....>>>..>>>>>>>>.........................<<<<<<<<<<<.>>>>>>>.>>>>............ ...................(((((.(((.....(((....)))..))))))))..........................((((((.(((.))).))).)))............. Structure of a pre-catalytic spliceosome; U4 snRNA 5nrl 5 170 7.2 RF00020 URS000053F313_4932 28530653 0000244,0000353 0005682,0046540 4932 aagcagcuuuacagaucaauggcggagggaggucaacaucaagaacugugggcgccuauagaacuuauaacgaacaugguucuugccuuuuaccagaaccauccggguguugucuccauagaaacagguaaagcuguccguuacugugggcuugccauauuuuuuggaac ..<<<<<<<.<<<<.......<<<<..<<<<<.<<<<<<.<<<..<<<<<<<..>>>>>>>..>>>.........<<<<<<<<...........>>>>>>>>....>>>>>>>>>>>......<<<<......>>>>>>>>..>>>>>>>>.>>>............... ..(((((.(.((((........(((..((((..((((((((((..((.(.((())).).))..))).....(...((((((((...........)))))))).).))))))).))))......((((......)))))))...))))).)).)))............... Structure of a pre-catalytic spliceosome; U5 snRNA 5nrl 6 95 7.2 RF00026 URS00006184A9_4932 28530653 0030621 0000244,0000353 0005688,0046540 4932 guucgcgaacuucguggacauuuggucaauuugaaacaauacagagaucagcaguuccccugcauaaggaugaaccguucaaagagauuuguuuu <<<<<<<<<.>>>>>>>>>.........<<<......>>>....................................................... (((((((((.))))))))).........(((......)))....................................................... Structure of a pre-catalytic spliceosome; U6 snRNA 5nwq A 41 1.91 RF01763 URS0000CBFF2B_2021 28988949 0010468 2021 ccggacgaggugcgccguacccggucaggacaagacggngc ((((.......<<<<<<<..))))..........>>>>>>> [[[[.......(((((((.(]]]]....).....))))))) The structure of the thermobifida fusca guanidine III riboswitch with guanidine.; Guanidine III riboswitch 5nwq B 41 1.91 RF01763 URS0000CBFF2B_2021 28988949 0010468 2021 ccggacgaggugcgccguacccggucaggacaagacggngc ((((.......<<<<<<<..))))..........>>>>>>> [[[[.......(((((((.(]]]]....).....))))))) The structure of the thermobifida fusca guanidine III riboswitch with guanidine.; Guanidine III riboswitch 5nwy M 75 2.9 RF00005 URS00004FF598_562 28556777 0030533 0006412 562 ugggguaucgccaagcgguaaggcaccggauucugauuccggcauuccgagguucgaauccucguaccccagcca <<<<<<<..<<<.........>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..(((.....[...))).(((((.......))))).....(((((..]....)))))))))))).... 2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex; Gln-tRNA 5ny8 A 41 2.04 RF01763 URS0000CBFF2B_2021 28988949 0010468 2021 ccggacgaggugcgccguacccggucaggacaagacggngc ((((.......<<<<<<<..))))..........>>>>>>> [[[[.......(((((((.(]]]]....).....))))))) The structure of the thermobifida fusca guanidine III riboswitch with aminoguanidine; RNA (41-MER) 5ny8 B 41 2.04 RF01763 URS0000CBFF2B_2021 28988949 0010468 2021 ccggacgaggugcgccguacccggucaggacaagacggngc .(((.......<<<<<<<..)))...........>>>>>>> [[[[.......(((((((.(]]]]....).....))))))) The structure of the thermobifida fusca guanidine III riboswitch with aminoguanidine; RNA (41-MER) 5nz3 A 41 2.059 RF01763 URS0000CBFF2B_2021 28988949 0010468 2021 cnggacgaggugcgccguacccggucaggacaagacggngc ((((.......<<<<<<<..))))..........>>>>>>> [[[[.......(((((((.(]]]]....).....))))))) The structure of the thermobifida fusca guanidine III riboswitch with methylguanidine; RNA (41-MER) 5nz3 B 41 2.059 RF01763 URS0000CBFF2B_2021 28988949 0010468 2021 cnggacgaggugcgccguacccggucaggacaagacggngc ((((.......<<<<<<<..))))..........>>>>>>> [[[[.......(((((((.(]]]]....).....))))))) The structure of the thermobifida fusca guanidine III riboswitch with methylguanidine; RNA (41-MER) 5nz6 A 41 2.94 RF01763 URS0000CBFF58_2021 28988949 0010468 2021 cnggacgaggugcgccguacccggucacgacaagacggngc ((((.......<<<<<<<..))))..........>>>>>>> [[[[.......(((((((.(]]]]....).....))))))) The structure of the thermobifida fusca guanidine III riboswitch with guanidine in space group P3212.; RNA (41-MER) 5nzd A 41 2.007 RF01763 URS0000CBFF2B_2021 28988949 0010468 2021 cnggacgaggugcgccguacccggucaggacaagacggngc ((((.......<<<<<<<..))))..........>>>>>>> [[[[.......(((((((.(]]]]....).....))))))) The structure of the thermobifida fusca guanidine III riboswitch in space group P212121.; guanidine III riboswitch 5nzd B 41 2.007 RF01763 URS0000CBFF2B_2021 28988949 0010468 2021 cnggacgaggugcgccguacccggucaggacaagacggngc ((((.......<<<<<<<..))))..........>>>>>>> [[[[.......(((((((.(]]]]....).....))))))) The structure of the thermobifida fusca guanidine III riboswitch in space group P212121.; guanidine III riboswitch 5o2r x 77 3.4 RF00005 URS00000FF435_83333 28741611 0030533 0006412 83333 aggcuuguagcucaggugguuagagcgcaccccugauaagggugaggucggugguucaaguccacucaggccuacca <<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))).... Cryo-EM structure of the proline-rich antimicrobial peptide Api137 bound to the terminating ribosome; P-site Ile-tRNA 5o61 BW 76 3.31 RF00005 URS00005AA258_246196 28683309 0030533 0006412 246196 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).(((((.......))))).....(((((..]....)))))))))))).... The complete structure of the Mycobacterium smegmatis 70S ribosome; P/P-site Phe-tRNA(Phe) 5o62 A 41 2.119 RF01763 URS0000CBFF2B_2021 28988949 0010468 2021 cnggacgaggugcgccguacccggucaggacaagacggngc ((((.......<<<<<<<..))))..........>>>>>>> [[[[.......(((((((.(]]]]....).....))))))) The structure of the thermobifida fusca guanidine III riboswitch with 1-Ethylguanidine.; RNA (41-MER) 5o62 B 33 2.119 RF01763 URS0000CBFF2B_2021 28988949 0010468 2021 cnggacgaggugcgccguacccggagacggngc ((((.......<<<<<<<..))))..>>>>>>> [[[[.......(((((((..]]]]..))))))) The structure of the thermobifida fusca guanidine III riboswitch with 1-Ethylguanidine.; RNA (41-MER) 5o69 A 41 2.319 RF01763 URS0000CBFF2B_2021 28988949 0010468 2021 cnggacgaggugcgccguacccggucaggacaagacggngc ((((.......<<<<<<<..))))..........>>>>>>> [[[[.......(((((((.(]]]]....).....))))))) The structure of the thermobifida fusca guanidine III riboswitch with agmatine.; RNA (41-MER) 5o69 B 37 2.319 RF01763 URS0000CBFF58_2021 28988949 0010468 2021 cnggacgaggugcgccguacccggagcaagacggngc .(((.......<<<<<<<..))).......>>>>>>> [[[[.......(((((((.(]]]].)....))))))) The structure of the thermobifida fusca guanidine III riboswitch with agmatine.; RNA (37-MER) 5o9z 2 100 4.5 RF00004 URS00003EE995_9606 28781166 0045131 0000348 0005686 9606 cgcuucucggccguguaguaucuguucuggauuuuuggagcagggagauggauccacuccacgcaucgaccugguauugcaguaccuccaggaacggugc ...........................................<<<<.<<<..>>>>>>>..<<<<<<.<<<<<.............>>>>>..>>>>>> ...........................................((((.(((())))))))..(((.((.(((((.............)))))..)).))) Cryo-EM structure of a pre-catalytic human spliceosome primed for activation (B complex); Human gene for small nuclear RNA U2 (snRNA U2) 5o9z 4 137 4.5 RF00015 URS0000200C70_9606 28781166 0017070 0000244,0000353 0005687,0046540 9606 agcuuugcgcaguggcaguaucguagccaaugagguuuauccgaggcgcgauuauugcuaauuacuuuucccaauaccccgccgugacgacuugcaauauagucggcauuggcaauuuuugacagucucgagacugg ...................<<<<<.<<<.....<<.....>>..>>>>>>>>............................<<<<<<.<<<<<........>>>>>.>>>.>>>.........<<<<<<..>>>>>>. ...................((((..(((.....((.....))..))).))))............................(((.((.(((((........))))).))..))).........((((((())))))). Cryo-EM structure of a pre-catalytic human spliceosome primed for activation (B complex); Homo sapiens U4A snRNA 5o9z 5 114 4.5 RF00020 URS0000118C49_9606 28781166 0000244,0000353 0005682,0046540 9606 acucugguuucucuucagaucgcauaaaucuuucgccuuuuacuaaagauuuccguggagaggaacaacucugagucuuaacccaauuuuuugagccuugccuuggcaaggcua .<<<...<<<<<<<<<<........<<<<<<<<.<.......>.>>>>>>>>...>>>>>>>>>>.......>>>..................<<<<<<<<....>>>>>>>>. .(((...((.((((.((........((((((((...........))))))))...)).)))).)).......)))..................((((((((....)))))))). Cryo-EM structure of a pre-catalytic human spliceosome primed for activation (B complex); Homo sapiens U5 A small nuclear RNA 5o9z 6 90 4.5 RF00026 URS000035C796_9606 28781166 0030621 0000244,0000353 0005688,0046540 9606 gugcucgcuucggcagcacauauacuaaaauuggaacgauacagagaagauuagcauggccccugcgcaaggaugacauucgugaagcgu <<<<<.<<....>>>>>>>....................................................................... (((((.((....)))))))....................................................................... Cryo-EM structure of a pre-catalytic human spliceosome primed for activation (B complex); Homo sapiens RNA, U6 small nuclear 1 (RNU6-1), small nuclear RNA 5oa3 1 75 4.2 RF00005 URS00002CB170_4932 28732596 0030533 0006412 4932 agcgccguggcgcaguggaagcgcgcagggcucauaacccugauguccucggaucgaaaccgagcggcgcuacca <<<<<<<..<<<<.......>>>><<<<<<.......>>>>>.>...<<<<<.......>>>>>>>>>>>>.... (((((((..((((....[..)))).(((((.......))))).....(((((..]....)))))))))))).... Human 40S-eIF2D-re-initiation complex; initiator Met-tRNA-i 5omw B 83 2.6 RF00005 URS00005ABD4E_562 29111343 0030533 0006412 562 gcccggaugguggaaucgguagacacaagggauuaaaucccucggcgcgcgcugugcggguucaagucccgcuccggguacca <<<<<<<..<<<...........>>>.<<<<<<...>>>>>>.<<<<..>>>>..<<<<<.......>>>>>>>>>>>>.... (((((((..(((......[....))).(((((.....))))).((((..))))..(((((..]....)))))))))))).... Mutant T252A of E. coli leucyl-tRNA synthetase, tRNA(leu) and leucyl-adenylate analogue in the aminoacylation conformation; L-leucyl-tRNA 5omw E 77 2.6 RF00005 URS00005ABD4E_562 29111343 0030533 0006412 562 gcccggaugguggaaucgguagacacaagggauucccucggcgcgcugugcggguucaagucccgcuccggguacca <<<<<<<..<<<...........>>>.<<<<<.>>>>>.<<<..>>>..<<<<<.......>>>>>>>>>>>>.... (((((((..(((......[....))).(((((.))))).(((..)))..(((((..]....)))))))))))).... Mutant T252A of E. coli leucyl-tRNA synthetase, tRNA(leu) and leucyl-adenylate analogue in the aminoacylation conformation; L-leucyl-tRNA 5on2 B 85 3.1 RF00005 URS00005ABD4E_562 29111343 0030533 0006412 562 gcccggaugguggaaucgguagacacaagggauuuaaaaucccucggcgcgcgcugugcggguucaagucccgcuccggguacca <<<<<<<..<<<...........>>>.<<<<<<<...>>>>>>>.<<<<..>>>>..<<<<<.......>>>>>>>>>>>>.... (((((((..(((......[....))).((((((.....)))))).((((..))))..(((((..]....)))))))))))).... Quaternary complex of mutant T252A of E. coli leucyl-tRNA synthetase with tRNA(leu), leucyl-adenylate analogue, and post-transfer editing analogue of norvaline in the aminoacylation conformation; tRNA(leu) 5on2 E 81 3.1 RF00005 URS00005ABD4E_562 29111343 0030533 0006412 562 gcccggaugguggaaucgguagacacaagggauaaucccucggcgcgcgcugugcggguucaagucccgcuccggguacca <<<<<<<..<<<...........>>>.<<<<.....>>>>.<<<<..>>>>..<<<<<.......>>>>>>>>>>>>.... (((((((..(((......[....))).((((.....)))).((((..))))..(((((..]....)))))))))))).... Quaternary complex of mutant T252A of E. coli leucyl-tRNA synthetase with tRNA(leu), leucyl-adenylate analogue, and post-transfer editing analogue of norvaline in the aminoacylation conformation; tRNA(leu) 5on3 B 79 3.1 RF00005 URS00005ABD4E_562 29111343 0030533 0006412 562 gcccggaugguggaaucgguagacacaagggauucccucggcgcgcgcugugcggguucaagucccgcuccggguacca <<<<<<<..<<<...........>>>.<<<<<.>>>>>.<<<<..>>>>..<<<<<.......>>>>>>>>>>>>.... (((((((..(((......[....))).(((((.))))).((((..))))..(((((..]....)))))))))))).... Quaternary complex of mutant T252A of E. coli leucyl-tRNA synthetase with tRNA(leu), leucyl-adenylate analogue, and post-transfer editing analogue of leucine in the aminoacylation conformation; tRNA(leu) 5on3 E 79 3.1 RF00005 URS00005ABD4E_562 29111343 0030533 0006412 562 gcccggaugguggaaucgguagacacaagggauucccucggcgcgcgcugugcggguucaagucccgcuccggguacca <<<<<<<..<<<...........>>>.<<<<<.>>>>>.<<<<..>>>>..<<<<<.......>>>>>>>>>>>>.... (((((((..(((......[....))).(((((.))))).((((..))))..(((((..]....)))))))))))).... Quaternary complex of mutant T252A of E. coli leucyl-tRNA synthetase with tRNA(leu), leucyl-adenylate analogue, and post-transfer editing analogue of leucine in the aminoacylation conformation; tRNA(leu) 5onh B 82 3.1 RF00005 URS00005ABD4E_562 29111343 0030533 0006412 562 gcccggaugguggaaucgguagacacaagggauuaaucccucggcgcgcgcugugcggguucaagucccgcuccggguacca <<<<<<<..<<<...........>>>.<<<<<<..>>>>>>.<<<<..>>>>..<<<<<.......>>>>>>>>>>>>.... (((((((..(((......[....))).((((.(..).)))).((((..))))..(((((..]....)))))))))))).... Quaternary complex of wild type E. coli leucyl-tRNA synthetase with tRNA(leu), leucyl-adenylate analogue, and post-transfer editing analogue of norvaline in the aminoacylation conformation; L-leucyl-tRNA(Leu) 5onh E 83 3.1 RF00005 URS00005ABD4E_562 29111343 0030533 0006412 562 gcccggaugguggaaucgguagacacaagggauaaucccucggcguucgcgcugugcggguucaagucccgcuccggguacca <<<<<<<..<<<...........>>>.<<<<.....>>>>.<<<<....>>>>..<<<<<.......>>>>>>>>>>>>.... (((((((..(((......[....))).(((((...))))).((((....))))..(((((..]....)))))))))))).... Quaternary complex of wild type E. coli leucyl-tRNA synthetase with tRNA(leu), leucyl-adenylate analogue, and post-transfer editing analogue of norvaline in the aminoacylation conformation; L-leucyl-tRNA(Leu) 5oql 2 230 3.2 RF01846,RF01848 URS0000BC465F_759272 28967883 0006396 0005730 759272 agcgacaauacuucagagaaucauuucuauaguaguuguccucucuuguguuuccuaaaggagccacagaucccacccggguugaugaacgagauccucggcgccagugagguccauuuacucucgcucuaccugcaaagguggcggucgcgugccucgucucgcggcuguauagagaguggcgaugaucuguaccccgcggggugggugucgauggaagucugaccggc ............................................................................<<<<..............<<<<<<<<<<.<<............<<<<<<...<<<<<<....>>>>>><<<<<<<<.<......>.>>>>>>>>....>>>>>>.........>>.<<<<<<..>>>>>>.>>>>>>>.>>>.......>>>>. ............................................................................((((......(.......((((((((.((((...(.........(((((...(.((((....)))).)(.((((((.(......).)))))).)....)))))...)......))..(((((()))))).)).))))).)))...)...)))). Cryo-EM structure of the 90S pre-ribosome from Chaetomium thermophilum; U3 snoRNA 5ot7 2 76 3.8 RF00005 URS00005AA258_562 29408956 0030533 0006412 562 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<...<<<..........>>>..<<..<.....>..>>......<<<<<.......>>>>>.>>>>>>.... (.((.......(...........)....(............)......(((((.......)))))...).)).... Elongation factor G-ribosome complex captures in the absence of inhibitors.; tRNA-Phe 5swd A 65 2.5 RF00167 URS000080E2A9_672 27841871 0009113 672 gggaagauauaauccuaaugauaugguuugggaguuucuaccaagagccuuaaacucuugauuau ......<<<...<<<<<<......<<.>>>>>><<....>><<<<<<>>.....>>>>>>..>>> ......(((...((((((......[[.))))))((.{..))((((((]].....))))))}.))) Structure of the adenine riboswitch aptamer domain in an intermediate-bound state; Vibrio vulnificus strain 93U204 chromosome II, adenine riboswitch aptamer domain 5swd B 68 2.5 RF00167 URS000080E2A9_672 27841871 0009113 672 gggaagauauaauccuaaugauaugguuugggaguuucuaccaagagccuuaaacucuugauuaucuu ...<<<<<<...<<<<<<......<<.>>>>>><<....>><<<<<<>>.....>>>>>>..>>>>>> ...((((((...((((((......[[.))))))((.{..))((((((]].....))))))}.)))))) Structure of the adenine riboswitch aptamer domain in an intermediate-bound state; Vibrio vulnificus strain 93U204 chromosome II, adenine riboswitch aptamer domain 5swe X 71 3.0 RF00167 URS000080E2A9_672 27841871 0009113 672 gggaagauauaauccuaaugauaugguuugggaguuucuaccaagagccuuaaacucuugauuaucuuccc <<<<<<<<<...<<<<<<......<<.>>>>>>........<<<<<<>>.....>>>>>>..>>>>>>>>> ((((((((((..((((((......[[.))))))[.....)]((((((]].....))))))..))))))))) Ligand-bound structure of adenine riboswitch aptamer domain converted in crystal from its ligand-free state using ligand mixing serial femtosecond crystallography; Vibrio vulnificus strain 93U204 chromosome II, adenine riboswitch aptamer domain 5t2c An 75 3.6 RF00005 URS0000326EAC_9606 27752045 0030533 0006412 9606 agcagaguggcgcagcggaagcgugcugggcccauaacccagaggucgauggaucgaaaccauccucugcuacca <<<<<....<<<.........>>>..........................................>>>>>.... (((((.....((.........))...(.(.........).).......(.............)...))))).... CryoEM structure of the human ribosome at 3.6 Angstrom resolution; tRNA 5t7v D 74 3.6 RF00005 URS0000868542_1280 28487427 0030533 0006412 1280 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcac <<<<<<...<<<<........>>>>..<<<<.......>>>>......<<<<<.......>>>>>.>>>>>>.. (((((.(..(.((.....[..)).)..(..............)......(.(...].....).).).))))).. Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3); E-site tRNA 5t83 A 90 2.71 RF00442 URS0000B21DF2_679936 28017522 0010468 679936 aaguuugcuaggguuccgcgucauagguggucugguccaagagcaaacggcuuucacaaagccacacggaaggauaaaagccugggagau ..<<<<<<..<<...<<<<<<.....>>>...>>>.>>....>>>>>><<<<<.....>>>>>...<...<<<.......>>>....>.. ..((((((..((...(((((((...))))..).)).))....))))))((((.......)))).[.(....((.......))..]..).. Structure of a guanidine-I riboswitch from S. acidophilus; RNA (95-MER) 5tcu E 75 3.9 RF00005 URS000031D44F_93061 28487427 0030533 0006412 93061 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacc <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>... (((((((..((((........)))).(((((.......))))).....((.((.......)).)))))))))... Methicillin sensitive Staphylococcus aureus 70S ribosome; P-site tRNA CHAIN 5tcu D 76 3.9 RF00005 URS00005AA258_93061 28487427 0030533 0006412 93061 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((........)))).(((((.......))))).....((.((.......)).))))))))).... Methicillin sensitive Staphylococcus aureus 70S ribosome; E-site tRNA CHAIN 5tf6 B 71 2.3 RF00026 URS0000B21DFD_4932 28045380 0030621 0000244,0000353 0005688,0046540 4932 ggucaauuugaaacaauacagagaugaucagcaguuccccugcauaaggaugaaccguuuuacaaagagac .<<<..<<<<...................<<<.<<<<.<<<.....>>>..>>>>.>>>...>>>>..>>> .(((..((((...................(((.((((.(((.....)))..)))).)))...))))..))) Structure and conformational plasticity of the U6 small nuclear ribonucleoprotein core; U6 snRNA 5tf6 D 52 2.3 RF00026 URS0000B21DFD_4932 28045380 0030621 0000244,0000353 0005688,0046540 4932 ggucaauuugaaacaauacagagaugaucagcagccguuuuacaaagagacc <<.<..<<<<...................<<<....>>>...>>>>..>.>> ((((..((((...................(((....)))...))))..)))) Structure and conformational plasticity of the U6 small nuclear ribonucleoprotein core; U6 snRNA 5tzs 2 126 5.1 RF01846 27980088 0006396 0005730 559292 nnnnnnnnnnnnnnnnnnnnnnnccacugaauccaacuugguugaugaguuaaccuuuguacccgugagaaaccguauggccgaugaucuuacccauggguggguacaaauggcagucugacaagu ....................................<<<<.............<.<<<<<<<<.<.......<<<..>>>........>..<<<<..>>>>.>>>>>>>>..>........>>>>. ...................................(((((.............((((((((((((...(...(((()))).)......)..((((()))))))))))))).))........))))) Architecture of the yeast small subunit processome; U3 snoRNA 5u3g B 85 2.3 RF00442 URS0000B21DF0_204038 28096518 0010468 204038 ngugacuaggguuccggcgaaagccgguccgagaguuaccgaccgccgaaaggcgguuacacggcgggaaaaaagcccgggagga <<<<<<..<<...<<<<<....>>>>>.>>....>>>>>><<<<<<<....>>>>>>>...<...<<<.......>>>....>.. ((((((..((...(((((....))))).))....))))))(((((((....))))))).(.[...(((.......))).)..].. Structure of the Dickeya dadantii ykkC riboswitch bound to guanidinium; ykkC riboswitch 5u4i x 77 3.5 RF00005 URS000041AF00_562 28077875 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Structural Basis of Co-translational Quality Control by ArfA and RF2 Bound to Ribosome; P-site or E-site fMet-tRNA(fMet) 5u4i y 77 3.5 RF00005 URS000041AF00_562 28077875 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Structural Basis of Co-translational Quality Control by ArfA and RF2 Bound to Ribosome; P-site or E-site fMet-tRNA(fMet) 5u4j x 15 3.7 RF00005 URS00001BBAFC_562 28077875 0030533 0006412 562 ucgggcucauaaccc ..<<<.......>>> ..(((.......))) Structural Basis of Co-translational Quality Control by ArfA and RF2 Bound to Ribosome; P-site tRNA fMet 5u9f X 77 3.2 RF00005 URS000041AF00_562 28300532 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((.(.........).)).(((((.......))))).....(((((.......)))))))))))..... 3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II); fMet-tRNA (P- and E-site) 5u9f W 77 3.2 RF00005 URS000041AF00_562 28300532 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))..... 3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II); fMet-tRNA (P- and E-site) 5u9g X 77 3.2 RF00005 URS000041AF00_562 28300532 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<.<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>.>>..... .((((((..((.(.........).)).(((((.......))))).....(((((.......)))))))))))..... 3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure I); fMet-tRNA (P- and E-site) 5u9g W 77 3.2 RF00005 URS000041AF00_562 28300532 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... 3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure I); fMet-tRNA (P- and E-site) 5ud5 C 70 2.347 RF00005 URS0000BC466B_192952 29035363 0030533 0006412 192952 ggaaaccugaucauguagaucgaauggacucuaaauccguucagccggguuagauucccgggguuuccgc <<<<<<<.<<<<.....>>>><<<<<<<.......>>>>>>>..<<<<<.......>>>>>>>>>>>>.. (((((((.((((...[.))))(((((((.......)))))))..(((((..]....)))))))))))).. Crystal structure of the tRNA binding domain of Pyrrolysyl-tRNA synthetase bound to tRNA(Pyl); RNA (70-MER) 5ud5 D 72 2.347 RF00005 URS0000BC466B_192952 29035363 0030533 0006412 192952 ggaaaccugaucauguagaucgaauggacucuaaauccguucagccggguuagauucccgggguuuccgcca <<<<<<<.<<<<.....>>>><<<<<<<.......>>>>>>>..<<<<<.......>>>>>>>>>>>>.... (((((((.((((...[.))))(((((((.......)))))))..(((((..]....)))))))))))).... Crystal structure of the tRNA binding domain of Pyrrolysyl-tRNA synthetase bound to tRNA(Pyl); RNA (70-MER) 5uq7 y 77 3.5 RF00005 URS000057545F_83333 29456023 0030533 0006412 83333 cgcgggguggagcagcccgguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(.(((..]....))).)))))))..... 70S ribosome complex with dnaX mRNA stemloop and E-site tRNA (""in"" conformation); P-site tRNA fMet 5uq7 z 76 3.5 RF00005 URS00005AA258_83333 29456023 0030533 0006412 83333 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... ((((.((..((((........)))).((((.........)))).....((.((.......)).)))).)))).... 70S ribosome complex with dnaX mRNA stemloop and E-site tRNA (""in"" conformation); E-site tRNA Phe 5uq7 x 55 3.5 RF00382 URS0000D56C4C_32630 29456023 0006452 32630 uaaggaaauaaaaauguuuagugaaccggcagccgcuacccgcgcgcggccggua ...........................<<<.<<<<<.....>>>.>>.>>>.... ............................((.(((((.....))).)).))..... 70S ribosome complex with dnaX mRNA stemloop and E-site tRNA (""in"" conformation); messenger RNA 5uq8 y 77 3.2 RF00005 URS000057545F_83333 29456023 0030533 0006412 83333 cgcgggguggagcagcccgguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... 70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA (""out"" conformation); P-site tRNA fMet 5uq8 z 76 3.2 RF00005 URS00005AA258_83333 29456023 0030533 0006412 83333 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((........)))).(.((..........))).....((.((.......)).))))))))).... 70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA (""out"" conformation); E-site tRNA Phe 5uq8 x 55 3.2 RF00382 URS0000D56C4C_32630 29456023 0006452 32630 uaaggaaauaaaaauguuuagugaaccggcagccgcuacccgcgcgcggccggua ...........................<<<.<<<<<.....>>>.>>.>>>.... ............................((.(((((.....))).)).))..... 70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA (""out"" conformation); messenger RNA 5uyk X 77 3.9 RF00005 URS000041AF00_83333 28538735 0030533 0006412 83333 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((.(.........).)).(((((.......))))).....(((((.......)))))))))))..... 70S ribosome bound with cognate ternary complex not base-paired to A site codon (Structure I); tRNAfMet 5uyk W 77 3.9 RF00005 URS000041AF00_83333 28538735 0030533 0006412 83333 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))..... 70S ribosome bound with cognate ternary complex not base-paired to A site codon (Structure I); tRNAfMet 5uyk Y 76 3.9 RF00005 URS00005AA258_83333 28538735 0030533 0006412 83333 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).(((((.......))))).....(((((..]....)))))))))))).... 70S ribosome bound with cognate ternary complex not base-paired to A site codon (Structure I); tRNAPhe 5uyl X 77 3.6 RF00005 URS000041AF00_83333 28538735 0030533 0006412 83333 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((.(.........).)).(((((.......))))).....(((((.......)))))))))))..... 70S ribosome bound with cognate ternary complex base-paired to A site codon (Structure II); tRNAfMet 5uyl W 77 3.6 RF00005 URS000041AF00_83333 28538735 0030533 0006412 83333 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... 70S ribosome bound with cognate ternary complex base-paired to A site codon (Structure II); tRNAfMet 5uyl Y 76 3.6 RF00005 URS00005AA258_83333 28538735 0030533 0006412 83333 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..))))((((((.......))))).)...(((((..]....)))))))))))).... 70S ribosome bound with cognate ternary complex base-paired to A site codon (Structure II); tRNAPhe 5uym X 77 3.2 RF00005 URS000041AF00_83333 28538735 0030533 0006412 83333 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((.(.........).)).(((((.......))))).....(((((.......)))))))))))..... 70S ribosome bound with cognate ternary complex base-paired to A site codon, closed 30S (Structure III); tRNAfMet 5uym W 77 3.2 RF00005 URS000041AF00_83333 28538735 0030533 0006412 83333 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))..... 70S ribosome bound with cognate ternary complex base-paired to A site codon, closed 30S (Structure III); tRNAfMet 5uym Y 76 3.2 RF00005 URS00005AA258_83333 28538735 0030533 0006412 83333 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..))))((((((.......))))).)...(((((..]....)))))))))))).... 70S ribosome bound with cognate ternary complex base-paired to A site codon, closed 30S (Structure III); Phe-tRNAPhe 5uyn X 77 4.0 RF00005 URS000041AF00_83333 28538735 0030533 0006412 83333 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((.(......[..).)).(((((.......))))).....(((((..]....)))))))))))..... 70S ribosome bound with near-cognate ternary complex not base-paired to A site codon (Structure I-nc); tRNAfMet 5uyn W 77 4.0 RF00005 URS000041AF00_83333 28538735 0030533 0006412 83333 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... 70S ribosome bound with near-cognate ternary complex not base-paired to A site codon (Structure I-nc); tRNAfMet 5uyn Y 76 4.0 RF00005 URS000042DDAB_83333 28538735 0030533 0006412 83333 gggucguuagcucaguugguagagcaguugacunuuaaucaauuggucgcagguucgaauccugcacgacccacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).(((((.......))))).....(((((..]....)))))))))))).... 70S ribosome bound with near-cognate ternary complex not base-paired to A site codon (Structure I-nc); tRNALys 5uyp X 77 3.9 RF00005 URS000041AF00_83333 28538735 0030533 0006412 83333 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((.(......[..).)).(((((.......))))).....(((((..]....)))))))))))..... 70S ribosome bound with near-cognate ternary complex base-paired to A site codon, open 30S (Structure II-nc); tRNAfMet 5uyp W 77 3.9 RF00005 URS000041AF00_83333 28538735 0030533 0006412 83333 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))..... 70S ribosome bound with near-cognate ternary complex base-paired to A site codon, open 30S (Structure II-nc); tRNAfMet 5uyp Y 76 3.9 RF00005 URS000042DDAB_83333 28538735 0030533 0006412 83333 gggucguuagcucaguugguagagcaguugacunuuaaucaauuggucgcagguucgaauccugcacgacccacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..))))..((((.......))))......(((((..]....)))))))))))).... 70S ribosome bound with near-cognate ternary complex base-paired to A site codon, open 30S (Structure II-nc); tRNALys 5uyq X 77 3.8 RF00005 URS000041AF00_83333 28538735 0030533 0006412 83333 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((.(......[..).)).(((((.......))))).....(((((..]....)))))))))))..... 70S ribosome bound with near-cognate ternary complex base-paired to A site codon, closed 30S (Structure III-nc); tRNAfMet 5uyq W 77 3.8 RF00005 URS000041AF00_83333 28538735 0030533 0006412 83333 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... 70S ribosome bound with near-cognate ternary complex base-paired to A site codon, closed 30S (Structure III-nc); tRNAfMet 5uyq Y 76 3.8 RF00005 URS000042DDAB_83333 28538735 0030533 0006412 83333 gggucguuagcucaguugguagagcaguugacunuuaaucaauuggucgcagguucgaauccugcacgacccacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).(((((.......))))).....(((((..]....)))))))))))).... 70S ribosome bound with near-cognate ternary complex base-paired to A site codon, closed 30S (Structure III-nc); tRNALys 5uza X 71 2.22 RF00167 URS000080E2A9_672 29651055 0009113 672 gggaagauauaauccuaaugauaugguuugggaguuucuaccaagagccuuaaacucuugauuaucuuccc <<<<<<<<<...<<<<<<......<<.>>>>>><......><<<<<<>>.....>>>>>>..>>>>>>>>> ((((((((((..((((((......[[.))))))[.....)]((((((]].....))))))..))))))))) Adenine riboswitch aptamer domain labelled with iodo-uridine by position-selective labelling of RNA (PLOR); RNA (71-MER) 5uzt A 31 NA RF00658 URS0000BC468A_9606 28437065 0035195 0016442 9606 gguguugacuguugaaucucauggcaacacc <<<<<<<.<<<..........>>>>>>>>>> (((((((.((............))))))))) Structure of wild type pre-miR21 apical loop; pre-miR-21 5uzz A 31 NA RF00658 URS0000BC468A_9606 28437065 0035195 0016442 9606 gguguugacuguugaaucucauggcaacacc <<<<<<<..<<........>>...>>>>>>> (((((((.................))))))) Structure of wild type pre-miR21 apical loop; pre-miR21 5v6x C 70 2.76 RF00005 URS0000BC466B_192952 29035363 0030533 0006412 192952 ggaaaccugaucauguagaucgaauggacucuaaauccguucagccggguuagauucccgggguuuccgc <<<<<<<.<<<<.....>>>><<<<<<<.......>>>>>>>..<<<<<.......>>>>>>>>>>>>.. (((((((.((((...[.))))(((((((.......)))))))..(((((..]....)))))))))))).. Crystal structure of the tRNA binding domain of Pyrrolysyl-tRNA synthetase mutant (32A NTD) bound to tRNA(Pyl); RNA (70-MER) 5v6x D 72 2.76 RF00005 URS0000BC466B_192952 29035363 0030533 0006412 192952 ggaaaccugaucauguagaucgaauggacucuaaauccguucagccggguuagauucccgggguuuccgcca <<<<<<<.<<<<.....>>>><<<<<<<.......>>>>>>>..<<<<<.......>>>>>>>>>>>>.... (((((((.((((...[.))))(((((((.......)))))))..(((((..]....)))))))))))).... Crystal structure of the tRNA binding domain of Pyrrolysyl-tRNA synthetase mutant (32A NTD) bound to tRNA(Pyl); RNA (70-MER) 5vp2 1w 72 2.8 RF00005 URS00005AA258_562 28505372 0030533 0006412 562 gcccgganagcucaggguagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcac <<<<<<<..<<<<......>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.. (((((((..((((...[..)))).((((.........)))).....(((((..]....)))))))))))).. Crystal structure of the Thermus thermophilus 70S ribosome in complex with madumycin II and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolution; A-site and E-site tRNAs 5vp2 1x 76 2.8 RF00005 URS000041AF00_562 28505372 0030533 0006412 562 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the Thermus thermophilus 70S ribosome in complex with madumycin II and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolution; P-site tRNA 5vp2 1y 74 2.8 RF00005 URS00005AA258_562 28505372 0030533 0006412 562 gcccgganagcucaggguagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<......>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((...[..)))).((((.........)))).....(((((..]....)))))))))))).... Crystal structure of the Thermus thermophilus 70S ribosome in complex with madumycin II and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolution; A-site and E-site tRNAs 5vp2 2w 69 2.8 RF00005 URS00005AA258_562 28505372 0030533 0006412 562 cccgganagcucagggagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggca <<<<<<..<<<<.....>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>.. ((((((..((((...[.)))).((((.........))))......((((..]....)))).)))))).. Crystal structure of the Thermus thermophilus 70S ribosome in complex with madumycin II and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolution; A-site and E-site tRNAs 5vp2 2x 76 2.8 RF00005 URS000041AF00_562 28505372 0030533 0006412 562 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the Thermus thermophilus 70S ribosome in complex with madumycin II and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolution; P-site tRNA 5vp2 2y 73 2.8 RF00005 URS00005AA258_562 28505372 0030533 0006412 562 gcccgganagcucagggagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<.....>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((...[.)))).((((.........)))).....(((((..]....)))))))))))).... Crystal structure of the Thermus thermophilus 70S ribosome in complex with madumycin II and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolution; A-site and E-site tRNAs 5vpp XV 78 3.9 RF00005 URS0000D7792C_562 30262649 0030533 0006412 562 cggugauuggcgcagccugguagcgcacuucguucggngacgaaggggucggagguucgaauccucuaucaccgacca <<<<<<<..<<<<.........>>>>..<<<<<......>>>>.>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.........))))....((........)).........((((.......)))).))))))).... The 70S P-site tRNA SufA6 complex; P-site tRNA SufA6 5vpp QV 78 3.9 RF00005 URS0000D7792C_562 30262649 0030533 0006412 562 cggugauuggcgcagccugguagcgcacuucguucggngacgaaggggucggagguucgaauccucuaucaccgacca <<<<<<<..<<<<.........>>>>..<<<<<......>>>>.>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.........))))....((........)).........((((.......)))).))))))).... The 70S P-site tRNA SufA6 complex; P-site tRNA SufA6 5vsu I 73 3.1 RF00026 URS00021ED8F5_4932 29717126 0030621 0000244,0000353 0005688,0046540 4932 aauuugaaacaauacagagaugaucagcgguuccccugcauaaggagaaccguuuuacaaagagauuuguuun ..<<<<...................<<<<<<<<.<<.......>>.>>>>>>>>...>>>>............ ..((((...................((((((((.(((....).)).))))))))...))))............ Structure of yeast U6 snRNP with 2'-phosphate terminated U6 RNA; Saccharomyces cerevisiae strain T8 chromosome XII sequence 5w4k 1w 74 2.7 RF00005 URS00005AA258_562 28846667 0030533 0006412 562 gcccgganagcucaggguagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<......>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((...[..)))).((((.........)))).....(((((..]....)))))))))))).... Crystal structure of the Thermus thermophilus 70S ribosome in complex with Klebsazolicin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution; tRNA, A-site and E-site tRNAs 5w4k 1x 76 2.7 RF00005 URS000041AF00_562 28846667 0030533 0006412 562 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the Thermus thermophilus 70S ribosome in complex with Klebsazolicin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution; P-site tRNA 5w4k 1y 74 2.7 RF00005 URS00005AA258_562 28846667 0030533 0006412 562 gcccgganagcucaggguagagcaggggauugaaaauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<......>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((......)))).((((.........)))).....(((((.......)))))))))))).... Crystal structure of the Thermus thermophilus 70S ribosome in complex with Klebsazolicin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution; tRNA 5w4k 2w 72 2.7 RF00005 URS00005AA258_562 28846667 0030533 0006412 562 cccgganagcucagggagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<..<<<<.....>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((...[.)))).((((.........))))......((((..]....)))).))))))..... Crystal structure of the Thermus thermophilus 70S ribosome in complex with Klebsazolicin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution; tRNA, A-site and E-site tRNAs 5w4k 2x 76 2.7 RF00005 URS000041AF00_562 28846667 0030533 0006412 562 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the Thermus thermophilus 70S ribosome in complex with Klebsazolicin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution; P-site tRNA 5w4k 2y 73 2.7 RF00005 URS00005AA258_562 28846667 0030533 0006412 562 gcccgganagcucagggagagcaggggauugaaaauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<.....>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((...[.)))).((((.........)))).....(((((..]....)))))))))))).... Crystal structure of the Thermus thermophilus 70S ribosome in complex with Klebsazolicin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution; tRNA 5wdt v 77 3.0 RF00005 URS00001BBAFC_562 29733411 0030533 0006412 562 cgcggggnggagcagccuggnagcucgucgggcucauaacccgaagaucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... 70S ribosome-EF-Tu H84A complex with GppNHp; tRNA-fMet 5wdt w 77 3.0 RF00005 URS00001BBAFC_562 29733411 0030533 0006412 562 cgcggggnggagcagccuggnagcucgucgggcucauaacccgaagaucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ..((..([.((.(.]....[..).))..((((.......))))......(((((..]....))))))..))...... 70S ribosome-EF-Tu H84A complex with GppNHp; tRNA-fMet 5wdt y 76 3.0 RF00005 URS00005AA258_562 29733411 0030533 0006412 562 gcccgganagcucagncggnagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..))))(((((.........)))).)...(((((..]....)))))))))))).... 70S ribosome-EF-Tu H84A complex with GppNHp; tRNA-Phe 5we4 v 77 3.1 RF00005 URS00001BBAFC_562 29733411 0030533 0006412 562 cgcggggnggagcagccuggnagcucgucgggcucauaacccgaagaucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((.(..((((......[..)))).(((((.......))))).....(((((..]....)))))).))))..... 70S ribosome-EF-Tu wt complex with GppNHp; tRNA-fMet 5we4 w 77 3.1 RF00005 URS00001BBAFC_562 29733411 0030533 0006412 562 cgcggggnggagcagccuggnagcucgucgggcucauaacccgaagaucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>..<<<<.......>>>>......<<<<<.......>>>>>>>>>>>..... ..((.(([.((.(.]....[..).))..(((.........)))......(((((..]....))))))).))...... 70S ribosome-EF-Tu wt complex with GppNHp; tRNA-fMet 5we4 y 76 3.1 RF00005 URS00005AA258_562 29733411 0030533 0006412 562 gcccgganagcucagncggnagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..))))(((((.........)))).)...(((((..]....)))))))))))).... 70S ribosome-EF-Tu wt complex with GppNHp; Phe-tRNA-Phe 5we6 v 77 3.4 RF00005 URS00001BBAFC_562 29733411 0030533 0006412 562 cgcggggnggagcagccuggnagcucgucgggcucauaacccgaagaucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))..... 70S ribosome-EF-Tu H84A complex with GTP and cognate tRNA; tRNA-fMet 5we6 w 77 3.4 RF00005 URS00001BBAFC_562 29733411 0030533 0006412 562 cgcggggnggagcagccuggnagcucgucgggcucauaacccgaagaucgucggnucaaauccggcccccgcaacca .<.<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>.>..... .(.((((..((.(......[..).))..((((.......))))......(((((..]....))))))))).)..... 70S ribosome-EF-Tu H84A complex with GTP and cognate tRNA; tRNA-fMet 5we6 y 76 3.4 RF00005 URS00005AA258_562 29733411 0030533 0006412 562 gcccgganagcucagncggnagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..))))(((((.........)))).)...(((((..]....)))))))))))).... 70S ribosome-EF-Tu H84A complex with GTP and cognate tRNA; Phe-tRNA-Phe 5wf0 v 77 3.6 RF00005 URS00001BBAFC_562 29733411 0030533 0006412 562 cgcggggnggagcagccuggnagcucgucgggcucauaacccgaagaucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... 70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C2); tRNA-fMet 5wf0 w 77 3.6 RF00005 URS00001BBAFC_562 29733411 0030533 0006412 562 cgcggggnggagcagccuggnagcucgucgggcucauaacccgaagaucgucggnucaaauccggcccccgcaacca ...<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>....... .(.(((([.((.(.]....[..).))..((((.......))))......(((((..]....))))))))).)..... 70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C2); tRNA-fMet 5wf0 y 76 3.6 RF00005 URS00005AA258_562 29733411 0030533 0006412 562 gcccgganagcucagncggnagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..))))(((((.........)))).)...(((((..]....)))))))))))).... 70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C2); Phe-tRNA-Phe 5wfk v 77 3.4 RF00005 URS00001BBAFC_562 29733411 0030533 0006412 562 cgcggggnggagcagccuggnagcucgucgggcucauaacccgaagaucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))..... 70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C3); tRNA-fMet 5wfk w 77 3.4 RF00005 URS00001BBAFC_562 29733411 0030533 0006412 562 cgcggggnggagcagccuggnagcucgucgggcucauaacccgaagaucgucggnucaaauccggcccccgcaacca ...<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>....... ...(((([.((.(.]....[..).))..((((.......))))......(((((..]....)))))))))....... 70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C3); tRNA-fMet 5wfk y 76 3.4 RF00005 URS00005AA258_562 29733411 0030533 0006412 562 gcccgganagcucagncggnagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<...<.......>..>......<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..))))((...............).)...(((((..]....)))))))))))).... 70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C3); Phe-tRNA-Phe 5wfs v 77 3.0 RF00005 URS00001BBAFC_562 29733411 0030533 0006412 562 cgcggggnggagcagccuggnagcucgucgggcucauaacccgaagaucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... 70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C4); tRNA-fMet 5wfs w 77 3.0 RF00005 URS00001BBAFC_562 29733411 0030533 0006412 562 cgcggggnggagcagccuggnagcucgucgggcucauaacccgaagaucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .(.(((([.(..(.]....[..)..)..((((.......))))......(((((..]....))))))))).)..... 70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C4); tRNA-fMet 5wfs y 76 3.0 RF00005 URS00005AA258_562 29733411 0030533 0006412 562 gcccgganagcucagncggnagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>><<<<<<<.....>>>>>>.>...<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..))))(((((.........)))).)...(((((..]....)))))))))))).... 70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C4); Phe-tRNA-Phe 5wis 1w 74 2.703 RF00005 URS00005AA258_562 28934499 0030533 0006412 562 gcccgganagcucaggguagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<......>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((...[..)))).((((.........)))).....(((((..]....)))))))))))).... Crystal structure of the Thermus thermophilus 70S ribosome in complex with methymycin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution; A-site and E-site tRNAs 5wis 1x 76 2.703 RF00005 URS000041AF00_562 28934499 0030533 0006412 562 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the Thermus thermophilus 70S ribosome in complex with methymycin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution; P-site tRNA 5wis 1y 74 2.703 RF00005 URS00005AA258_562 28934499 0030533 0006412 562 gcccgganagcucaggguagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<......>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((......)))).((((.........)))).....(((((.......)))))))))))).... Crystal structure of the Thermus thermophilus 70S ribosome in complex with methymycin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution; A-site and E-site tRNAs 5wis 2w 72 2.703 RF00005 URS00005AA258_562 28934499 0030533 0006412 562 cccgganagcucagggagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<..<<<<.....>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((...[.)))).((((.........))))......((((..]....)))).))))))..... Crystal structure of the Thermus thermophilus 70S ribosome in complex with methymycin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution; A-site and E-site tRNAs 5wis 2x 76 2.703 RF00005 URS000041AF00_562 28934499 0030533 0006412 562 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the Thermus thermophilus 70S ribosome in complex with methymycin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution; P-site tRNA 5wis 2y 73 2.703 RF00005 URS00005AA258_562 28934499 0030533 0006412 562 gcccgganagcucagggagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<.....>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((...[.)))).((((.........)))).....(((((..]....)))))))))))).... Crystal structure of the Thermus thermophilus 70S ribosome in complex with methymycin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution; A-site and E-site tRNAs 5wit 1w 74 2.6 RF00005 URS00005AA258_562 28934499 0030533 0006412 562 gcccgganagcucaggguagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcaccn <<<<<<<..<<<<......>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((...[..)))).((((.........)))).....(((((..]....)))))))))))).... Crystal structure of the Thermus thermophilus 70S ribosome in complex with pikromycin and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution; A-site tRNA 5wit 1x 76 2.6 RF00005 URS000041AF00_562 28934499 0030533 0006412 562 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the Thermus thermophilus 70S ribosome in complex with pikromycin and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution; P-site tRNA 5wit 1y 74 2.6 RF00005 URS00005AA258_562 28934499 0030533 0006412 562 gcccgganagcucaggguagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<......>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((......)))).((((.........)))).....(((((.......)))))))))))).... Crystal structure of the Thermus thermophilus 70S ribosome in complex with pikromycin and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution; E-site tRNA 5wit 2w 72 2.6 RF00005 URS00005AA258_562 28934499 0030533 0006412 562 cccgganagcucagggagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcaccn <<<<<<..<<<<.....>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((...[.)))).((((.........)))).....(((((..]....)))))))))))..... Crystal structure of the Thermus thermophilus 70S ribosome in complex with pikromycin and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution; A-site tRNA 5wit 2x 76 2.6 RF00005 URS000041AF00_562 28934499 0030533 0006412 562 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the Thermus thermophilus 70S ribosome in complex with pikromycin and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution; P-site tRNA 5wit 2y 73 2.6 RF00005 URS00005AA258_562 28934499 0030533 0006412 562 gcccgganagcucagggagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<.....>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....)))).((((.........)))).....(((((.......)))))))))))).... Crystal structure of the Thermus thermophilus 70S ribosome in complex with pikromycin and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution; E-site tRNA 5wlc L2 169 3.8 RF01846 URS0000B21E09_1247190 28945246 0006396 0005730 1247190 gucgacguacuucauaggaucauuucuauaggaaucgucacucuuugacucuucaaaagagccacugaauccaacuugguugaugagucccauaaccuuuguacccagugagaaaccguauggcgcgaugaucuacccauggguggguacaaauggcagucugacaagu .........................................................................<<<<<.................<<<<<<<<<<.<<.......<<<..>>>.........>><<<<..>>>>.>>>>>>>>.>>........>>>>> .........................................................................(((((......(..........((((((((((..(...(...((....))..)......).(((....))).)))))))).))....)...))))) The complete structure of the small subunit processome; U3 snoRNA 5wsg D 117 4.0 RF00020 URS000053F313_559292 27980089 0000244,0000353 0005682,0046540 559292 ggaggucaacaucaagaacugugggccuuugccuauagaacuuauaacgaacaugguucuugccuuuuaccagaaccauccggguguugucuccauccauauuuuuuggaacuuuuc <<<<<.<<<<<<<.....<<<<<<<<....>>>>>>>>..............<<<<<<<<...........>>>>>>>>...>>>>>>>>>>>>....................... (((((.(((((((.....((((((((....)))))))).........((...((((((((.(.......).)))))))).))))))))))))))....................... Cryo-EM structure of the Catalytic Step II spliceosome (C* complex) at 4.0 angstrom resolution; U5 snRNA 5wsg E 103 4.0 RF00026 URS00006184A9_559292 27980089 0030621 0000244,0000353 0005688,0046540 559292 guucgcgaaguaacccuucguggacauuuggucaauuugaaacaauacagagaugaucagcaguuccccugcauaaggaugaaccguuuuacaaagagauuua <<<<<<<<<<.....>>>>>>>>>>.....................................<<<..<<<.....>>>...>>>................... ((((.(((((.....))))).)))).....................................(((.((((.....)))..))))................... Cryo-EM structure of the Catalytic Step II spliceosome (C* complex) at 4.0 angstrom resolution; Saccharomyces cerevisiae S288c SNR6 snRNA 5wsg L 91 4.0 RF00004 URS000023C730_559292 27980089 0045131 0000348 0005686 559292 acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuuucaacauuuuuuggcaccgcgacccucgcacuuguggagucg ..................................................................<<...<<...........>>...>> ..................................................................((...(.............)...)) Cryo-EM structure of the Catalytic Step II spliceosome (C* complex) at 4.0 angstrom resolution; RNA (91-MER) 5wt1 C 67 2.598 RF00005 URS0000CBFF25_272844 29214216 0030533 0006412 272844 gcgguagcucagccugggagagcaccggacugaagauccgggugucggggguucaaaucccccccgc <<<<..<<<<.........>>>><<<<<<.......>>>>>.>...<<<<<.......>>>>>>>>> ((((..((((......[..))))((((((.......))))).)...(((((..]....))))))))) Pyrococcus abyssi methyltransferase PaTrm5a bound by SAH and cognate tRNA; RNA (76-MER) 5wt1 F 68 2.598 RF00005 URS0000CBFF25_272844 29214216 0030533 0006412 272844 ggcgguagcucagccugggagagcaccggacugaagauccgggugucggggguucaaaucccccccgc .<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>> .((((..((((......[..))))((((((.......))))).)...(((((..]....))))))))) Pyrococcus abyssi methyltransferase PaTrm5a bound by SAH and cognate tRNA; RNA (76-MER) 5wt3 C 73 3.204 RF00005 URS0000CBFF25_272844 29214216 0030533 0006412 272844 ggggcgguagcucagccugggagagcaccggacugaagauccgggugucggggguucaaaucccccccgcccc <<<<<<<..<<<<.........>>>><<<<<<.......>>>>>.>...<<<<<.......>>>>>>>>>>>> (((((((..((((......[..))))((((((.......))))).)...(((((..]....)))))))))))) Pyrococcus abyssi methyltransferase PaTrm5a bound by MTA and cognate tRNA; RNA (73-MER) 5wwr C 72 3.096 RF00005 URS0000BC46AB_9606 28531330 0030533 0006412 9606 aggguauagcucagggguagagcauuugacuagaucaagaggucccugguucaaauccaggugcccucucca .<<<<<..<<<<.......>>>>.<<<<<<..>.>>>>>.....<<<<<.......>>>>>>>>>>...... .(((((..((((....[..)))).((((((()).)))).)....(((((..]....))))))))))...... Crystal structure of human NSun6/tRNA/SFG; tRNA 5wwr D 72 3.096 RF00005 URS0000BC46AB_9606 28531330 0030533 0006412 9606 aggguauagcucagggguagagcauuugacuagaucaagaggucccugguucaaauccaggugcccucucca .<<<<...<<<<.......>>>>.<<<<<<..>.>>>>>.....<<<<<.......>>>>>.>>>>...... .(((((..((((....[..))))..(((((()).))))......(((((..]....))))))))))...... Crystal structure of human NSun6/tRNA/SFG; tRNA 5wws C 72 3.247 RF00005 URS0000BC46AB_9606 28531330 0030533 0006412 9606 aggguauagcucagggguagagcauuugacuagaucaagaggucccugguucaaauccaggugcccucucca .<<<<...<<<<.......>>>>.<<<<<<..>.>>>>>.....<<<<<.......>>>>>.>>>>...... .(((((..((((....[..))))..(((((()).))))......(((((..]....))))))))))...... Crystal structure of human NSun6/tRNA/SAM; tRNA 5wws D 71 3.247 RF00005 URS0000BC46AB_9606 28531330 0030533 0006412 9606 aggguauagcucagggguagagcauuugacagaucaagaggucccugguucaaauccaggugcccucucca .<<<<<..<<<<.......>>>>.<<<<<....>>>>>.....<<<<<.......>>>>>>>>>>...... .(((((..((((....[..))))..((((....))))......(((((..]....))))))))))...... Crystal structure of human NSun6/tRNA/SAM; tRNA 5wwt C 72 3.197 RF00005 URS0000BC46AB_9606 28531330 0030533 0006412 9606 aggguauagcucagggguagagcauuugacuagaucaagaggucccugguucaaauccaggugcccucucca .<<<<...<<<<.......>>>>.<<<<<<..>.>>>>>.....<<<<<.......>>>>>.>>>>...... .(((((..((((....[..))))..(((((()).))))......(((((..]....))))))))))...... Crystal structure of human NSun6/tRNA; tRNA 5wwt D 71 3.197 RF00005 URS0000BC46AB_9606 28531330 0030533 0006412 9606 aggguauagcucagggguagagcauuugacagaucaagaggucccugguucaaauccaggugcccucucca .<<<<<..<<<<.......>>>>.<<<<<....>>>>>.....<<<<<.......>>>>>>>>>>...... .(((((..((((....[..))))..(((((.).))))......(((((..]....))))))))))...... Crystal structure of human NSun6/tRNA; tRNA 5wyj 3A 157 8.7 RF01846 URS0000B21E09_559292 28244370 0006396 0005730 559292 gucgacguacuucauaggaucauuucacucuuugacucuucaaaagagccacugaauccaacuugguugaugaccuuuguaccccagagugagccguugcauuuuauggcgcgaugaucuugacccauggguggguacaaauggcagucugacaagu ............................................................<<<<<........<<<<<<<<<<<....<....<<<<.<....>.>>>>.........>...<<<<..>>>>>>>>>>>>>.>>........>>>>> .............................................................((((......(.(((((((((((....(....((((........)))).........)...((((..))))))))))))).))....)...)))). Cryo-EM structure of the 90S small subunit pre-ribosome (Dhr1-depleted, Enp1-TAP, state 1); U3 RNA 5wyk 3A 157 4.5 RF01846 URS0000B21E09_559292 28244370 0006396 0005730 559292 gucgacguacuucauaggaucauuucacucuuugacucuucaaaagagccacugaauccaacuugguugaugaccuuuguaccccagagugagccguugcauuuuauggcgcgaugaucuugacccauggguggguacaaauggcagucugacaagu ............................................................<<<<<........<<<<<<<<<<<....<....<<<<.<....>.>>>>.........>...<<<<..>>>>>>>>>>>>>.>>........>>>>> .............................................................((((......(..((((((((((....(....(((..........))).........)...((((..))))))))))))).).....)...)))). Cryo-EM structure of the 90S small subunit pre-ribosome (Mtr4-depleted, Enp1-TAP); U3 RNA 5x6b P 75 2.596 RF00005 URS00000B8EA0_243232 29142195 0030533 0006412 243232 gccgggguagucuaggggcuaggcagcggacugcagauccgccuuacguggguucaaaucccacccccggcucca <<<<<<<..<<<<.......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((....((....[..))...(((((.......))))).....(((((..]....)))))))))))).... Crystal structure of SepCysE-SepCysS in complex with tRNACys from Methanocaldococcus jannaschii; tRNACys 5xjc B 84 3.6 RF00020 URS000075BAAE_9606 28502770 0000244,0000353 0005682,0046540 9606 gguuucucuucagaucgcauaaaucuuucgccuuuuacuaaagauuuccguggagaggaacaacccaauuuuuugaggccuugc .<<<<<<<<<<<........<<<<<<<<...........>>>>>>>>...>>>>>>>>>>>....................... .(((.(((((((....(...((((((((.(.......).)))))))).).))))))).)))....................... Cryo-EM structure of the human spliceosome just prior to exon ligation at 3.6 angstrom; U5 snRNA 5xjc F 97 3.6 RF00026 URS00001EC8D7_9606 28502770 0030621 0000244,0000353 0005688,0046540 9606 gugcucgcuucggcagcacauauacuaaaauuggaacgauacagagaagauuagcauggccccugcgcaaggaugacacgcaaauucgugaagcguu <<<<<.<<<..>>>>>>>>.....................................<<...<<<.....>>>....>>................... (((((.((....))))))).....................................((..((((.....)))..).))................... Cryo-EM structure of the human spliceosome just prior to exon ligation at 3.6 angstrom; U6 snRNA 5xjc H 140 3.6 RF00004 URS00003EE995_9606 28502770 0045131 0000348 0005686 9606 aucgcuucucggccuuuuggcuaagaucaaguguaguaucuguucuuuuaauaucguccucuaccgaggacaauauuaaggauuuuuggagcagggagccacgcaucgaccugguauugcaguaccuccaggaacggugc ...............................................<<<<<<<.<<<<<<....>>>>>>.>>>>>>>...............<......><<<<<<.<<<<<.............>>>>>..>>>>>> ...............................................(((((((.((((((....)))))).)))))))...............(..()..)(((.((.(((((.............)))))..)).))) Cryo-EM structure of the human spliceosome just prior to exon ligation at 3.6 angstrom; Homo sapiens small nuclear RNA (U2) gene 5y88 B 117 3.46 RF00020 URS000053F313_559292 28919079 0000244,0000353 0005682,0046540 559292 ggaggucaacaucaagaacugugggccuuugccuauagaacuuauaacgaacaugguucuugccuuuuaccagaaccauccggguguugucuccauccauauuuuuuggaacuuuuc <<<<<.<<<<<<<.....<<<<<<<<....>>>>>>>>..............<<<<<<<<...........>>>>>>>>...>>>>>>>>>>>>....................... (((((.(((((((.....((((((((....)))))))).........((...((((((((.(.......).)))))))).))))))))))))))....................... Cryo-EM structure of the intron-lariat spliceosome ready for disassembly from S.cerevisiae at 3.5 angstrom; U5 snRNA 5y88 D 101 3.46 RF00026 URS00006184A9_559292 28919079 0030621 0000244,0000353 0005688,0046540 559292 guucgcgaaguaacccuucguggacauuuggucaauuugaaacaauacagagaugaucagcaguuccccugcauaaggaugaaccguuuuacaaagagauu <<<<<<<<<<.....>>>>>>>>>>.....................................<<<..<<<.....>>>...>>>................. ((((.(((((.....))))).)))).....................................(((.((((.....)))..))))................. Cryo-EM structure of the intron-lariat spliceosome ready for disassembly from S.cerevisiae at 3.5 angstrom; U6 snRNA 5y88 F 82 3.46 RF00004 URS000023C730_559292 28919079 0045131 0000348 0005686 559292 acgaaucucuuugccuuuuggcuuagaucaaguguaguaucugacauuuuuuggcaccgcgacccucgcacuuguggagucg .........................................................<<...<<...........>>...>> .........................................................((...(.............)...)) Cryo-EM structure of the intron-lariat spliceosome ready for disassembly from S.cerevisiae at 3.5 angstrom; U2 snRNA 5ylz B 117 3.6 RF00020 URS000053F313_559292 29153833 0000244,0000353 0005682,0046540 559292 ggaggucaacaucaagaacugugggccuuugccuauagaacuuauaacgaacaugguucuugccuuuuaccagaaccauccggguguugucuccauccauauuuuuuggaacuuuuc <<<<<.<<<<<<<.....<<<<<<<<....>>>>>>>>..............<<<<<<<<...........>>>>>>>>...>>>>>>>>>>>>....................... (((((.(((((((.....((((((((....)))))))).........((...((((((((.(.......).)))))))).))))))))))))))....................... Cryo-EM Structure of the Post-catalytic Spliceosome from Saccharomyces cerevisiae at 3.6 angstrom; U5 snRNA 5ylz D 103 3.6 RF00026 URS00006184A9_559292 29153833 0030621 0000244,0000353 0005688,0046540 559292 guucgcgaaguaacccuucguggacauuuggucaauuugaaacaauacagagaugaucagcaguuccccugcauaaggaugaaccguuuuacaaagagauuua <<<<<<<<<<.....>>>>>>>>>>.....................................<<<..<<<.....>>>...>>>................... ((((.(((((.....))))).)))).....................................(((.((((.....)))..))))................... Cryo-EM Structure of the Post-catalytic Spliceosome from Saccharomyces cerevisiae at 3.6 angstrom; U6 snRNA 5ylz F 91 3.6 RF00004 URS000023C730_559292 29153833 0045131 0000348 0005686 559292 acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuuucaacauuuuuuggcaccgcgacccucgcacuuguggagucg ..................................................................<<...<<...........>>...>> ..................................................................((...(.............)...)) Cryo-EM Structure of the Post-catalytic Spliceosome from Saccharomyces cerevisiae at 3.6 angstrom; U2 snRNA 5yyn B 63 3.0 RF00005 URS0000316653_1422 0030533 0006412 1422 gcgcucguagcucaauuggauagagcaucagaagguuagggguucgaauccucucgagcgcgc <<<<<<<..<<<<.........>>>>...........<<<<<.......>>>>>>>>>>>>.. .((((((..((((.....[...)))).(...).....(((((..]....)))))))))))... Crystal structures of E.coli arginyl-trna synthetase (argrs) in complex with substrate TRNA(Arg); TRNA 5yyn D 64 3.0 RF00005 URS0000316653_1422 0030533 0006412 1422 gcgcucguagcucaauuggauagagcauucagaagguuagggguucgaauccucucgagcgcgc <<<<<<<..<<<<.........>>>>............<<<<<.......>>>>>>>>>>>>.. (((((((..((((.....[...)))).(....).....(((((..]....)))))))))))).. Crystal structures of E.coli arginyl-trna synthetase (argrs) in complex with substrate TRNA(Arg); TRNA 5yzg B 84 4.1 RF00020 URS000075BAAE_9606 29301961 0000244,0000353 0005682,0046540 9606 gguuucucuucagaucgcauaaaucuuucgccuuuuacuaaagauuuccguggagaggaacaacccaauuuuuugaggccuugc .<<<<<<<<<<<........<<<<<<<<...........>>>>>>>>...>>>>>>>>>>>....................... .(((.(((((((....(...((((((((.(.......).)))))))).).))))))).)))....................... The Cryo-EM Structure of Human Catalytic Step I Spliceosome (C complex) at 4.1 angstrom resolution; U5 snRNA 5yzg F 97 4.1 RF00026 URS00001EC8D7_9606 29301961 0030621 0000244,0000353 0005688,0046540 9606 gugcucgcuucggcagcacauauacuaaaauuggaacgauacagagaagauuagcauggccccugcgcaaggaugacacgcaaauucgugaagcguu <<<<<.<<<..>>>>>>>>.....................................<<...<<<.....>>>....>>................... (((((.((....))))))).....................................((..((((.....)))..).))................... The Cryo-EM Structure of Human Catalytic Step I Spliceosome (C complex) at 4.1 angstrom resolution; U6 snRNA 5yzg H 139 4.1 RF00004 URS00003EE995_9606 29301961 0045131 0000348 0005686 9606 aucgcuucucggccuuuuggcuaagaucaaguguaguaucuguucuuuuaauauguccucuaccgaggacaauauuaaggauuuuuggagcagggagccacgcaucgaccugguauugcaguaccuccaggaacggugc ...............................................<<<<<<<<<<<<<....>>>>>>.>>>>>>>...............<......><<<<<<.<<<<<.............>>>>>..>>>>>> ...............................................(((((((((((((....)))))).)))))))...............(..()..)(((.((.(((((.............)))))..)).))) The Cryo-EM Structure of Human Catalytic Step I Spliceosome (C complex) at 4.1 angstrom resolution; U2 snRNA 5z56 B 84 5.1 RF00020 URS000075BAAE_9606 29360106 0000244,0000353 0005682,0046540 9606 gguuucucuucagaucgcauaaaucuuucgccuuuuacuaaagauuuccguggagaggaacaacccaauuuuuugaggccuugc .<<<<<<<<<<<........<<<<<<<<...........>>>>>>>>...>>>>>>>>>>>....................... .(((.(((((((....(...((((((((.(.......).)))))))).).))))))).)))....................... cryo-EM structure of a human activated spliceosome (mature Bact) at 5.1 angstrom.; U5 snRNA 5z56 F 93 5.1 RF00026 URS00001EC8D7_9606 29360106 0030621 0000244,0000353 0005688,0046540 9606 gugcucgcuucggcagcacauauacuaaaauuggaacgauacagagaagauuagcauggccccugcgcaaggaugacacauucgugaagcguu <<<<<.<<<..>>>>>>>>.....................................<<...<<<.....>>>....>>............... (((((.((....))))))).....................................((..((((.....)))..).))............... cryo-EM structure of a human activated spliceosome (mature Bact) at 5.1 angstrom.; U6 snRNA 5z56 H 136 5.1 RF00004 URS00003EE995_9606 29360106 0045131 0000348 0005686 9606 aucgcuucucggccggcuaagaucaaguguaguaucuguucuuaucaguuuaauaucugauguccucucgaggacggauuuuuggagcagggagccacgcaucgaccugguauugcaguaccuccaggaacggugc ...........................................<<<<<........>>>>>.<<<<<..>>>>>................<......><<<<<<.<<<<<.............>>>>>..>>>>>> ...........................................(((((........)))))((((((..))))))...............(..()..)(((.((.(((((.............)))))..)).))) cryo-EM structure of a human activated spliceosome (mature Bact) at 5.1 angstrom.; U2 snRNA 5z57 B 84 6.5 RF00020 URS000075BAAE_9606 29360106 0000244,0000353 0005682,0046540 9606 gguuucucuucagaucgcauaaaucuuucgccuuuuacuaaagauuuccguggagaggaacaacccaauuuuuugaggccuugc .<<<<<<<<<<<........<<<<<<<<...........>>>>>>>>...>>>>>>>>>>>....................... .(((.(((((((....(...((((((((.(.......).)))))))).).))))))).)))....................... Cryo-EM structure of the human activated spliceosome (late Bact) at 6.5 angstrom; U5 snRNA 5z57 F 93 6.5 RF00026 URS00001EC8D7_9606 29360106 0030621 0000244,0000353 0005688,0046540 9606 gugcucgcuucggcagcacauauacuaaaauuggaacgauacagagaagauuagcauggccccugcgcaaggaugacacauucgugaagcguu <<<<<.<<<..>>>>>>>>.....................................<<...<<<.....>>>....>>............... (((((.((....))))))).....................................((..((((.....)))..).))............... Cryo-EM structure of the human activated spliceosome (late Bact) at 6.5 angstrom; U6 snRNA 5z57 H 136 6.5 RF00004 URS00003EE995_9606 29360106 0045131 0000348 0005686 9606 aucgcuucucggccggcuaagaucaaguguaguaucuguucuuaucaguuuaauaucugauguccucucgaggacggauuuuuggagcagggagccacgcaucgaccugguauugcaguaccuccaggaacggugc ...........................................<<<<<........>>>>>.<<<<<..>>>>>................<......><<<<<<.<<<<<.............>>>>>..>>>>>> ...........................................(((((........)))))((((((..))))))...............(..()..)(((.((.(((((.............)))))..)).))) Cryo-EM structure of the human activated spliceosome (late Bact) at 6.5 angstrom; U2 snRNA 5z58 B 84 4.9 RF00020 URS000075BAAE_9606 29360106 0000244,0000353 0005682,0046540 9606 gguuucucuucagaucgcauaaaucuuucgccuuuuacuaaagauuuccguggagaggaacaacccaauuuuuugaggccuugc .<<<<<<<<<<<........<<<<<<<<...........>>>>>>>>...>>>>>>>>>>>....................... .(((.(((((((....(...((((((((.(.......).)))))))).).))))))).)))....................... Cryo-EM structure of a human activated spliceosome (early Bact) at 4.9 angstrom.; U5 snRNA 5z58 F 93 4.9 RF00026 URS00001EC8D7_9606 29360106 0030621 0000244,0000353 0005688,0046540 9606 gugcucgcuucggcagcacauauacuaaaauuggaacgauacagagaagauuagcauggccccugcgcaaggaugacacauucgugaagcguu <<<<<.<<<..>>>>>>>>.....................................<<...<<<.....>>>....>>............... (((((.((....))))))).....................................((..((((.....)))..).))............... Cryo-EM structure of a human activated spliceosome (early Bact) at 4.9 angstrom.; U6 snRNA 5z58 H 136 4.9 RF00004 URS00003EE995_9606 29360106 0045131 0000348 0005686 9606 aucgcuucucggccggcuaagaucaaguguaguaucuguucuuaucaguuuaauaucugauguccucucgaggacggauuuuuggagcagggagccacgcaucgaccugguauugcaguaccuccaggaacggugc ...........................................<<<<<........>>>>>.<<<<<..>>>>>................<......><<<<<<.<<<<<.............>>>>>..>>>>>> ...........................................(((((........)))))((((((..))))))...............(..()..)(((.((.(((((.............)))))..)).))) Cryo-EM structure of a human activated spliceosome (early Bact) at 4.9 angstrom.; U2 snRNA 5zal C 58 4.7 RF00027 URS0000D56C46_9606 29706542 0035195 0016442 9606 ugagguaguagguuguauaguuuuagggggagauaacuauacaaucuacugucuuacc .<<<<<<<<<<<<<<<<<<<.<.<........>.>.>>>>>>>>>>>>>>>>>>>... ..((...(((((((((((((.(.(........).).)))))))))))))...)).... Cryo-EM structure of human Dicer and its complexes with a pre-miRNA substrate; RNA (73-mer) 5zam C 44 5.7 RF00027 URS0000D56C46_9606 29706542 0035195 0016442 9606 ugagguaguagguuggagauaacuauacaaucuacugucuuacc ..<<..<<<<<<<<..............>>>>>>>>..>>.... (.((..(((((.((..............)).)))))..).)).. Cryo-EM structure of human Dicer and its complexes with a pre-miRNA substrate; RNA (73-mer) 5zeb v 77 3.4 RF00005 URS00001BBAFC_562 30206241 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaagaucgucgguucaaauccggcccccgcaacca .<<<<<...<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>.>>>>>..... .(((((...((((......[..)))).(((((.......))))).....(((((..]....))))).)))))..... M. Smegmatis P/P state 70S ribosome structure; P-tRNAfMet 5zep w 77 3.4 RF00005 URS00001BBAFC_562 30206241 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaagaucgucgguucaaauccggcccccgcaacca .<<<<<...<<<<.........>>>>..<<<<.......>>>>......<<<<<.......>>>>>.>>>>>..... ...((((..((.(.........).))..((((.......))))......(.(((.......))).)))))....... M. smegmatis hibernating state 70S ribosome structure; E-tRNAfMet 5zeu v 77 3.7 RF00005 URS00001BBAFC_562 30206241 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaagaucgucgguucaaauccggcccccgcaacca .<<<<<...<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>.>>>>>..... .(((((...((((......[..)))).(((((.......))))).....(((((..]....))))).)))))..... M. smegmatis P/P state 30S ribosomal subunit; P-tRNAfMet 5zey A 369 12.5 RF00023 URS00004493AF_246196 30206241 0006401 246196 ggggcugaacgguuucgacuucgagcaucgaauccagggaagcgugccggugcaggcaagagaccaccguaagcgucguugcaaccaauuaagcgccgauuccaaucagcgcgacuacgcccucgcugccuaagcgacggcuggucugucagaccgggagugcccucggcccggauccuggcaucagcuagagggacccacccacggguucggucgcgggaccuguggggacaucaaacagcgacugggaucgucaucucggcuuguucgugugaccgggagauccgaguagagacauagcgaacugcgcacggagaagccucgaggacaugccguaggacccggguucaauucccggcagcuccacca <<<...............<<.................<<...<<<<..........<.......................>...........................................<<.............>.>............................................................<<.<.......((.......>>>.....................))......(...........<<<.................)..............>>>.....>>>>......>>...............>>.....<<.........>>......>>>.... (((..............................(.(..(....((((...............................................................................(............)..............................................................[..[.......((......]..].....................))......[......[....((........].........]...............))....)))).......).).)...................(((.......)))......))).... M. smegmatis Trans-translation state 70S ribosome; tmRNA 5zey B 77 12.5 RF00005 URS00001BBAFC_562 30206241 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaagaucgucgguucaaauccggcccccgcaacca .<<<<<...<<<<.........>>>>.<<<<<.......>>>>>......<<<<.......>>>>..>>>>>..... .(((((...((((......[..))))..((.(.......).))......(.(((..]....))).).)))))..... M. smegmatis Trans-translation state 70S ribosome; A-tRNAfMet 5zlu DD 77 3.6 RF00005 URS0000D77933_300852 29712846 0030533 0006412 300852 cgcggggnggagcagcccgguagcucgucgggnacauaacccgaagnucgucggnucaaauccggcccccgcaacca ..<<<<<..<<<<.........>>>>.<<<<<.......>>>>.>....<<<<<.......>>>>>>>>>>...... ...((((..((((.........)))).((.((.......)).)).....(((((.......)))))))))....... Ribosome Structure bound to ABC-F protein.; P-site tRNA 5zwm F 99 3.4 RF00026 URS0000D7792B_559292 29794219 0030621 0000244,0000353 0005688,0046540 559292 guucgcgaaauuuuacuucguggacauuuggucaauuugaaacaauacagaaucagcaguuccccugcauaaggaugaaccgucaaagagauuuguuuu <<<<<<<<<.......>>>>>>>>>.........<<<......>>>..................................................... (((((((((.(...).))))))))).........(((......)))..................................................... Cryo-EM structure of the yeast pre-B complex at an average resolution of 3.4~4.6 angstrom (tri-snRNP and U2 snRNP Part); U6 snRNA 5zwm I 110 3.4 RF00015 URS00001143F5_559292 29794219 0017070 0000244,0000353 0005687,0046540 559292 auccuuaugcacgggaaauacgcauaucagugaggauucguccgagauuguguuuuugcugguuuaauuauaacuccucauggucagacuauguagggaauuuuuggaau ...................<<<<<.<<<.....<<<....>>>..>>>>>>>>.....................<<<<<<<<<<<.>>>>>>>.>>>>............ ...................(((((.(((.....(((....)))..))))))))......................((((((.(((.))).))).)))............. Cryo-EM structure of the yeast pre-B complex at an average resolution of 3.4~4.6 angstrom (tri-snRNP and U2 snRNP Part); U4 snRNA 5zwm B 175 3.4 RF00020 URS000053F313_559292 29794219 0000244,0000353 0005682,0046540 559292 aagcagcuuuacagaucaauggcggagggaggucaacaucaagaacugugggcgccuauagaacuuauaacgaacaugguucuugccuuuuaccagaaccauccggguguugucuccauagaaacagguaaagcuguccguuacugugggcuugccauauuuuuuggaacuuuuc ...<<<<<<.<<<<.......<<<<..<<<<<.<<<<<<<<<<..<<<<<<<..>>>>>>>..>>>.........<<<<<<<<...........>>>>>>>>...>>>>>>>>>>>>......<<<<......>>>>>>>>..>>>>>>>>.>>..................... ...((((.(.((((........(((..((((..(((((.((((..((.(.((())).).))..)))....((...((((((((.(.......).)))))))).))).))))).))))......((((......)))))))...))))).)).))..................... Cryo-EM structure of the yeast pre-B complex at an average resolution of 3.4~4.6 angstrom (tri-snRNP and U2 snRNP Part); U5 snRNA 5zwm H 206 3.4 RF00004 URS000023C730_559292 29794219 0045131 0000348 0005686 559292 gaaucucuuugaguguaguaucuguucuuuucaguguaacaacugaaaugaccuaggcucauacauuuuuuggcacggacgggaagaggguggcgcugcaagaggaaguuuuucgauuguugauuuuccuuuugaaguguccucgagacgucgcgacccucggagucguucuugacuuggucgcuugauguuucuucuucccguuc .............................<<<<<<......>>>>>>.<<<<<..>>.>>>................<<<<<<<<<<..<.<<<<<<.<<<<<<<<<<.<<..<<..>>..>>.>>>>>>>>>>.>>>>>>.>.<<<<<<<<<<<<.<<...<<<<<<....>>>>>>>>>>>>..>>>>>>>>.>>>>>>>>>>. .............................((((((......))))))((((((())).))))..............(.(((((((((.(..(.(.((.(((.(((((..(...(.().)...)..))))).))).)).).)..)((((((((((((.((....(((((....))))).))))))..)))))))).))))))))).) Cryo-EM structure of the yeast pre-B complex at an average resolution of 3.4~4.6 angstrom (tri-snRNP and U2 snRNP Part); U2 snRNA 5zwn P 480 3.4 RF00488 URS000012D749_559292 29794219 0030627 0000395 0005685 559292 auacuuaccuuaagauaucagaggaaaguccuacugaucaaacaugcgcuuccaauaguagaaggacguuaagcauuuaucauugaacuaguucauugaagucauugaugcaaacuccuuggucacacacacggcgcggaaggcguguuugcugacguuuccauucccuuguuucaaucauugguuaaucccuuuggguuaaacugauuuuuggggcccuuuguuucuucugccuggagaaguuugacaccaaauucaaauugguguuaggggagcuggggccuuucaaaagagcuuuguagaggcauucuuuuugacuacuuuucgcgugccauuuuaguuuuugacgauucgaaugaacuaguuuaugaugaaguugagauuauuuggucgauuguaguuugaagauguagucucaacuuugcucaaauuuuggaaggucuugguaggaacggguggaucuuauaauuuuugauuuau ...........<<<<.<<<<<<<<.....>>>.>>>>><<<<<<<<<.<<<<<........<<<<<.<<<..<<<<.<.<<<.<<<<<..>>>>>.>>>.......>>>>>.>>>>>>>>.................>>>>>>>>>>>>>><<<.<<<<.<<..<<<<<.<<<<<<<..<<<<<<<.<.<<<...>>>.>.>>>>>>>..>>>>>>>((.......<<<<<....))>>>>>...<<<<<<<<.......>>>>>>>>.>>>>><<<<<<<<<<<<<<<<<..<<...<<.<<<<<..<<<<<..<<<<<<..<<.....<<<<...<<<<<<..<<<..<<<<.<<<<<<<>>>>>>>..>>>>>>>.>>>>>>..>>>>.>>..>>>>>>.>>>>>....>>>>>.>>...>>.....>>>>>>>>>>>>>>>>>.>>>>>>..>>>.>>>>................ ...........((((((((((((((...)))).)))))(((((((((.(((((........(((((.(((..(((((..(((.((((....)))).)).)......))))).)))))))).(.(...........))))))))))))))))(((.((((.((..(((((((((((((..((..(((.(.(((...))).).)))..))..)))))))[[.......(((((....]])))))...(((((((.(......)))))))))))))).((((((((((.(((((..((...((.(((.(..((((....(((((..(....(..(((...((.(.(...((..(((..((.(((()))).))...)))))..).).))..))).).)..)))))...))))....).))).))...)).....))))).))))))))))..))))))..))))))))................ Cryo-EM structure of the yeast pre-B complex at an average resolution of 3.3 angstrom (Part II: U1 snRNP region); U1 snRNA 5zwo F 99 3.9 RF00026 URS0000D7792B_559292 29794219 0030621 0000244,0000353 0005688,0046540 559292 guucgcgaaauuuuacuucguggacauuuggucaauuugaaacaauacagaaucagcaguuccccugcauaaggaugaaccgucaaagagauuuguuuu <<<<<<<<<.......>>>>>>>>>.........<<<......>>>..................................................... (((((((((.(...).)))))))))..........((......))...................................................... Cryo-EM structure of the yeast B complex at average resolution of 3.9 angstrom; U6 snRNA 5zwo B 175 3.9 RF00020 URS000053F313_559292 29794219 0000244,0000353 0005682,0046540 559292 aagcagcuuuacagaucaauggcggagggaggucaacaucaagaacugugggcgccuauagaacuuauaacgaacaugguucuugccuuuuaccagaaccauccggguguugucuccauagaaacagguaaagcuguccguuacugugggcuugccauauuuuuuggaacuuuuc ...<<<<<<.<<<<.......<<<<..<<<<<.<<<<<<<<<<..<<<<<<<..>>>>>>>..>>>.........<<<<<<<<...........>>>>>>>>...>>>>>>>>>>>>......<<<<......>>>>>>>>..>>>>>>>>.>>..................... ...((((.(.((((........(((..(((((.((((((((((..((.(.((())).).))..)))....((...((((((((...........)))))))).))))))))))))))......((((......)))))))...))))).)).))..................... Cryo-EM structure of the yeast B complex at average resolution of 3.9 angstrom; U5 snRNA 5zwo I 110 3.9 RF00015 URS0000D77922_559292 29794219 0017070 0000244,0000353 0005687,0046540 559292 auccuuaugcacgggaaauacgcauaucagugaggauucguccgagauuguguuuuugcugguuuaauuauaacuccucauggucagacuauguagggaauuuuuggaau ...................<<<<<.<<<.....<<<....>>>..>>>>>>>>.....................<<<<<<<<<<<.>>>>>>>.>>>>............ ...................(((((.(((.....(((....)))..))))))))......................((((((.(((.))).))).)))............. Cryo-EM structure of the yeast B complex at average resolution of 3.9 angstrom; U4 snRNA 5zwo H 150 3.9 RF00004 URS0000D77944_559292 29794219 0045131 0000348 0005686 559292 gaaucucuuugaguguaguaucuguucuuuucaguguaacaacugaaaugaccuaggcucauacauuuuuuggcacggacgggaagaggagacgucgcgacccucggagucguucuugacuuggucgcuugauguuucuucuucccguuc .............................<<<<<<......>>>>>><<<<<<..>>.>>>>...............<<<<<<<<<<.<<<<<<<<<<<<.<<...<<<<<<....>>>>>>>>>>>>..>>>>>>>>.>>>>>>>>>>. .............................((((((......))))))((((((())).))))..............(.(((((((((.((((((((((((.((....(((((....))))).))))))..)))))))).))))))))).) Cryo-EM structure of the yeast B complex at average resolution of 3.9 angstrom; U2 snRNA 6agb A 369 3.48 RF00009 URS0000413C32_559292 30262633 3.1.26.5 0004526 0008033 0030677 559292 guggaacagugguaauuccuacgauuaagaaaccuguuuacagaaggauccccaccuaugggcggguuaucagauauuaucaggugggaaauucgguggaacacaguggagccuuguccuccggguuaaugucgcuuuuggcauuggccccugcuccugagagaagaaauauacuggggaaccagucuuuaccgaccguuguuaucagaaauucacggaguucggccuaggucggacuccgaugggaacggcaacgguuguuccguuugacuugucgcccgcuacggcgugagcgucaaggucuguugagugcaaucguaggacgucauuaguggcgaacccgauaccgauuacugcugcuguuccagc .<<<<<<<<<<<<<..<<<<<<<........<<<<<..........<<<.<<<.<<....>>.>>>..>>>.........>>>>>[[...{{.(((((........<<<<<<.........<<<<<<<<<<<<<....>>>>>>>>>>>>...<<....>>.<<........<<<<<....>>>>>.>>....>..<<<<<<.............<<<<<<<<<<<....>>>>>>>>>>>.........>>>>>>...>>>>>>...<<<<<<.<<<.<<<....>>>...>>>.>>>.>>>.............>>>>>>><<<<<....>>>>>..]]...)))))}}...>>>>>>>>>>>>>.. .(((((((((((((..(((((((........(((((..........(((.(((.((....)).)))..))).........))))).{...[[.[[[[.....[....(((.((..)......(((..((((.(......).))))..)))...((....)).((........(((((....))))).)).......(((((...............(((((.((.(....).)).)))))...........)))))..]).)))....((((((.(((((((....))).).))).))).))).............)))))))((.((....)).))..}.....]]]]]]...))))))))))))).. Cryo-EM structure of yeast Ribonuclease P; Ribonuclease P RNA 6ah0 B 115 5.7 RF00020 URS000075BAAE_9606 30315277 0000244,0000353 0005682,0046540 9606 acucugguuucucuucagaucgcauaaaucuuucgccuuuuacuaaagauuuccguggagaggaacaacucugagucuuaacccaauuuuuugaggccuugcuuuggcaaggcua .<<<...<<<<<<<<<<........<<<<<<<<.<.......>.>>>>>>>>...>>>>>>>>>>.......>>>...................<<<<<<<<....>>>>>>>>. .(((...((.((((.((........((((((((...........))))))))...)).)))).)).......)))....................(((((((....))))))).. The Cryo-EM Structure of the Precusor of Human Pre-catalytic Spliceosome (pre-B complex); U5snRNA 6ah0 F 69 5.7 RF00026 URS00001EC8D7_9606 30315277 0030621 0000244,0000353 0005688,0046540 9606 gugcucgcuucggcagcacagaagauuagcauggccccugcgcaaggaugauucgugaagcguauuuuu <<<<<.<<....>>>>>>>.................................................. (((((.((....))))))).................................................. The Cryo-EM Structure of the Precusor of Human Pre-catalytic Spliceosome (pre-B complex); U6snRNA 6ah0 H 109 5.7 RF00004 URS00003EE995_9606 30315277 0045131 0000348 0005686 9606 cgcuucucggccaguguaguaucuguucuuaucaguuuaauaucugauggauuuuuggagcagggagccacgcaucgaccugguauugcaguaccuccaggaacggugc ..............................<<<<<........>>>>>...............<......><<<<<<.<<<<<.............>>>>>..>>>>>> ..............................(((((........)))))...............(..()..)(((.((.(((((.............)))))..)).))) The Cryo-EM Structure of the Precusor of Human Pre-catalytic Spliceosome (pre-B complex); U2snRNA 6ah0 I 117 5.7 RF00015 URS00003F07BD_9606 30315277 0017070 0000244,0000353 0005687,0046540 9606 agcuuugcgcaguggcaaucguagccaaugaggucuauccgaggcgcgauugcuaauugccgccgugacgacuugcaauauagucggcacuggcaauuuuugacagucucgagacug ..................<<<<.<<<.....<<.....>>..>>>>>>>............<<<<<<.<<<<<........>>>>>.>>>.>>>.........<<<<<<<>>>>>>> ..................(((..(((.....((.....))..))).)))............((((((.(((((........))))).))).))).........((((((())))))) The Cryo-EM Structure of the Precusor of Human Pre-catalytic Spliceosome (pre-B complex); U4snRNA 6ah3 A 369 3.48 RF00009 URS0000413C32_559292 30262633 3.1.26.5 0004526 0008033 0030677 559292 guggaacagugguaauuccuacgauuaagaaaccuguuuacagaaggauccccaccuaugggcggguuaucagauauuaucaggugggaaauucgguggaacacaguggagccuuguccuccggguuaaugucgcuuuuggcauuggccccugcuccugagagaagaaauauacuggggaaccagucuuuaccgaccguuguuaucagaaauucacggaguucggccuaggucggacuccgaugggaacggcaacgguuguuccguuugacuugucgcccgcuacggcgugagcgucaaggucuguugagugcaaucguaggacgucauuaguggcgaacccgauaccgauuacugcugcuguuccagc .<<<<<<<<<<<<<..<<<<<<<........<<<<<..........<<<.<<<.<<....>>.>>>..>>>.........>>>>>[[...{{.(((((........<<<<<<.........<<<<<<<<<<<<<....>>>>>>>>>>>>...<<....>>.<<........<<<<<....>>>>>.>>....>..<<<<<<.............<<<<<<<<<<......>>>>>>>>>>.........>>>>>>...>>>>>>...<<<<<<.<<<.<<<....>>>...>>>.>>>.>>>.............>>>>>>><<<<<....>>>>>..]]...)))))}}...>>>>>>>>>>>>>.. .(((((((((((.(..(((((((........(((((..........(((.(((.((....)).)))..))).........))))).{...[[.[[[[.....[....(((.((..)......(((..((((.(......).))))..)))...((....))..(........(((((....))))).)........(((((...............(((((.((.(....).)).)))))...........)))))..]).)))....((((((.(((((((....))).).))).))).))).............)))))))((.((....)).))..}.....]]]]]]...).))))))))))).. Cryo-EM structure of yeast Ribonuclease P with pre-tRNA substrate; Ribonuclease P RNA 6ah3 T 80 3.48 RF00005 URS0000D77911_559292 30262633 0030533 0006412 559292 agaagcggauuuagcucaguugggagagcgccagacugaagaucuggagguccuguguucgauccacagaauucgcauuu ....<<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... ....(((((((..((((.....[..)))).((((.........)))).....(((((..]....)))))))))))).... Cryo-EM structure of yeast Ribonuclease P with pre-tRNA substrate; pre-tRNA 6ahd I 136 3.8 RF00015 URS00003F07BD_9606 30315277 0017070 0000244,0000353 0005687,0046540 9606 agcuuugcgcaguggcaguaucguagccaaugaggucuauccgaggcgcgauuauugcuaauuacuuuucccaauaccccgccgugacgacuugcaauauagucggcacuggcaauuuuugacagucucgagacug ...................<<<<<.<<<.....<<.....>>..>>>>>>>>............................<<<<<<.<<<<<........>>>>>.>>>.>>>.........<<<<<<<>>>>>>> ...................(((((.(((.....((.....))..))))))))............................((((((.(((((........))))).))).)))..........(((((()))))). The Cryo-EM Structure of Human Pre-catalytic Spliceosome (B complex) at 3.8 angstrom resolution; U4snRNA 6ahd B 115 3.8 RF00020 URS000075BAAE_9606 30315277 0000244,0000353 0005682,0046540 9606 acucugguuucucuucagaucgcauaaaucuuucgccuuuuacuaaagauuuccguggagaggaacaacucugagucuuaacccaauuuuuugaggccuugcuuuggcaaggcua .<<<...<<<<<<<<<<........<<<<<<<<...........>>>>>>>>...>>>>>>>>>>.......>>>...................<<<<<<<<....>>>>>>>>. .(((...((((((((((........((((((((.(.......).))))))))...)))))))))).......)))....................(((((((....))))))).. The Cryo-EM Structure of Human Pre-catalytic Spliceosome (B complex) at 3.8 angstrom resolution; U5snRNA 6ahd F 94 3.8 RF00026 URS00001EC8D7_9606 30315277 0030621 0000244,0000353 0005688,0046540 9606 gugcucgcuucggcagcacauauacuaaaauuggaacgauacagagaagauuagcauggccccugcgcaaggaugacauucgugaagcguauuu <<<<<.<<....>>>>>>>........................................................................... (((((.((....)))))))........................................................................... The Cryo-EM Structure of Human Pre-catalytic Spliceosome (B complex) at 3.8 angstrom resolution; U6snRNA 6ahd H 109 3.8 RF00004 URS00003EE995_9606 30315277 0045131 0000348 0005686 9606 cgcuucucggccaguguaguaucuguucuuaucaguuuaauaucugauggauuuuuggagcagggagccacgcaucgaccugguauugcaguaccuccaggaacggugc ..............................<<<<<........>>>>>...............<......><<<<<<.<<<<<.............>>>>>..>>>>>> ..............................(((((........)))))...............(..()..)(((.((.(((((.............)))))..)).))) The Cryo-EM Structure of Human Pre-catalytic Spliceosome (B complex) at 3.8 angstrom resolution; U2snRNA 6ahr A 341 3.92 RF00009 URS000013F331_9606 30454648 3.1.26.5 0004526 0008033 0030677 9606 auagggcggagggaagcucaucaguggggccacgagcugagugcguccugucacuccacucccaugucccuugggaaggucugagacuagggccagaggcggcccuaacagggcucucccugagcuucggggaggugaguucccagagaacggggcuccgcgcgaggucagacugggcaggagaugccguggaccccgcccuucggggaggggcccggcggaugccuccuuugccggagcuuggaacagacucacggccagcgaagugaguucaauggcugaggugagguaccccgcaggggaccucauaacccaauucagacuacucuccuccgcccauu <<.<<<<<<<<<.<..((((.....<<<<..........<<<<........>>>>............>>>>..[...<..<<<<<.....<<<.......<<<<<.....>>>>><<<<<<<.....>>>>>>><<<<<<<.............<<<<<<.<<<<<<.......<<<<<.....<<<<<.<<.<<<<.<<<....>>>.>>>>>>>>>>>..>>>>>>>>>.>>>>>>>>........>>>>>>>.>>>....................))))<<<<<<<.<<<<...>>>>>>>>>>>..]....>>>>>.>.....>>>>>>>>>>>>. ((.(((((((((..((.[[[......((((........((((((.....).)))).)........).)))...{...(..(((((.....(((........((((.....)))).(((((.(.....).)))))((((((..............((((((.((.(((.......(((((......((((.((.((((.(((....))).))))))))))...))))))))..)))))))).........)))))).)))....................]]].(((((((.((((...)))))))))))..}....))))).)..))..))))))))))). Cryo-EM structure of human Ribonuclease P; H1 RNA 6ahu A 341 3.66 RF00009 URS000013F331_9606 30454648 3.1.26.5 0004526 0008033 0030677 9606 auagggcggagggaagcucaucaguggggccacgagcugagugcguccugucacuccacucccaugucccuugggaaggucugagacuagggccagaggcggcccuaacagggcucucccugagcuucggggaggugaguucccagagaacggggcuccgcgcgaggucagacugggcaggagaugccguggaccccgcccuucggggaggggcccggcggaugccuccuuugccggagcuuggaacagacucacggccagcgaagugaguucaauggcugaggugagguaccccgcaggggaccucauaacccaauucagacuacucuccuccgcccauu <<.<<<<<<<<<.<<.((((.{...<<<<..........<<<<........>>>>............>>>>.[[...<<<<<<<<.....<<<<......<<<<<.....>>>>><<<<<<<.....>>>>>>><<<<<<<.............<<<<<<.<<<<<<.......<<<<<.....<<<<<.<<.<<<<.<<<....>>>.>>>>>>>>>>>..>>>>>>>>>.>>>>>>>>........>>>>>>>>>>>..................}.))))<<<<<<<.<<<<...>>>>>>>>>>>..]]...>>>>>>>>..>.>>>>>>>>>>>>. ((.((((((((..(((((((.(...(((((........((((((.....).)))).)........).)))).........[[[[......((((......(((((.....)))))(((((((.....)))))))(((((((.............((((((.((.(((.......(((((......((((.((.((((.(((....))).))))))))))...))))))))..))))))))........))))))))))).................[).))))(((((((.(((.....))))))))))...]....]]]]....)).).)))))))))). Cryo-EM structure of human Ribonuclease P with mature tRNA; H1 RNA 6aso I 70 2.71 RF00026 URS0000D56C4E_4932 29717126 0030621 0000244,0000353 0005688,0046540 4932 caauuugaaacaauacagagaugaucagcgguuccccugcauaaggggaaccguuuuacaaagaguuuun ...<<<<...................<<<<<<<<<<<<.....>>>>>>>>>>>>...>>>>........ (..((((...................((((((((((((.....))))))))))))...))))..)..... Structure of yeast U6 snRNP with 3'-phosphate terminated U6 RNA; Saccharomyces cerevisiae strain HB_S_GIMBLETTROAD_9 chromosome XII sequence 6az1 2 76 2.7 RF00005 URS000080E264_562 29150609 0030533 0006412 562 gcgcggauagcucagucgguagagcaggggauugaanauccccguguccuugguucgauuccgaguccgcgcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>......<<<<.......>>>>.>>>>>>>.... ((((((...(((..........))).(((((.......)))))......(.............)..)))))).... Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin; tRNA-Phe 6az1 3 77 2.7 RF00005 URS00001BBAFC_562 29150609 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaagaucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((.........)))).(((((.......))))).......(((.......)))..))))))..... Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin; P-site tRNA 6az1 4 76 2.7 RF00005 URS000080E264_562 29150609 0030533 0006412 562 gcgcggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgcgcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... .(((((....(((........)))..(((((.......)))))......((((.......))))..)))))..... Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin; E-site tRNA 6b19 D 19 4.5 RF00005 URS0000D56C47_9606 29695867 0030533 0006412 9606 gucccuguucgggcgccac ................... ................... Architecture of HIV-1 reverse transcriptase initiation complex core; tRNA lysine3 6b4v D 77 3.4 RF00005 URS000041AF00_83333 29366636 0030533 0006412 83333 cgcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca .<<<<<...<<<...........>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>.>>>>>..... .((((..............[.......(((((.......))))).......(((..]....)))....))))..... Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome; tRNA 6b4v IA 77 3.4 RF00005 URS000041AF00_83333 29366636 0030533 0006412 83333 cgcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca ..<<<<...<<<<.........>>>>.<<<<<.......>>>>>......<<<<.......>>>>..>>>>...... ..(((((..((((......[..)))).(((((.......)))))......((((..]....)))).)))))...... Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome; tRNA 6b4v HB 77 3.4 RF00005 URS000041AF00_83333 29366636 0030533 0006412 83333 cgcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca .<<<<<...<<<...........>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>.>>>>>..... .((((......................(((((.......))))).......(((.......)))....))))..... Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome; tRNA 6b4v MC 77 3.4 RF00005 URS000041AF00_83333 29366636 0030533 0006412 83333 cgcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca ..<<<<...<<<<.........>>>>.<<<<<.......>>>>>......<<<<.......>>>>..>>>>...... ..(((((..((((......[..)))).(((((.......)))))......((((..]....)))).)))))...... Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome; tRNA 6bg9 A 47 9.0 RF00175 URS0000CBFF35_9606 29398526 0019074 9606 ggcaggacucggcuugcugaagcgcgcacggcaagaggcgaggggcc ............................................... ............................................... HYBRID NMR/CRYO-EM STRUCTURE OF THE HIV-1 RNA DIMERIZATION SIGNAL; RNA dimerization signal 6bg9 B 47 9.0 RF00175 URS0000CBFF35_9606 29398526 0019074 9606 ggcaggacucggcuugcugaagcgcgcacggcaagaggcgaggggcc ............................................... ............................................... HYBRID NMR/CRYO-EM STRUCTURE OF THE HIV-1 RNA DIMERIZATION SIGNAL; RNA dimerization signal 6bjx A 158 3.14 RF00028 URS0000D77908_5911 29910185 0000372 5911 gaauugcgggaaaggggucaacagccguacaguaccaagucucaggggaaacuuugagauggccuugcaaaggguaugguaauaagcugacggacaugguccuaaccacgcagccaaguccuaagucaacagaucuucuguugauauggaugcaguuc <...<<<<<<...<<<<<<.....<<<<.<<<.<<...<<<<<<<<<....>>>>>>>>>..<<.......>>.....>>......>>>>>>>....>>>>>>..>>.>>>>..>..<<<<...<<<<<<<<<...>>>>>>>>>..>>>>....... (...((((((...((((((.....((((.(((.(((..(((((((((....)))))))))..((.......))....)))......)))))))....))))))..)).))))..)..((((..((((((((((...))))))))).)))))....... Group I self-splicing intron P4-P6 domain mutant U131A (with isopropanol soaking); Group I self-splicing intron P4-P6 domain 6bjx B 158 3.14 RF00028 URS0000D77908_5911 29910185 0000372 5911 gaauugcgggaaaggggucaacagccguacaguaccaagucucaggggaaacuuugagauggccuugcaaaggguaugguaauaagcugacggacaugguccuaaccacgcagccaaguccuaagucaacagaucuucuguugauauggaugcaguuc <...<<<<<<...<<<<<<.....<<<<.<<<.<<...<<<<<<<<<....>>>>>>>>>..<<.......>>.....>>......>>>>>>>....>>>>>>..>>.>>>>..>..<<<<...<<<<<<<<<...>>>>>>>>>..>>>>....... (...((((((...((((((.....((((.(((.(((..(((((((((....)))))))))..((.......))....)))......)))))))....))))))..)).))))..)..((((..((((((((((...))))))))).)))))....... Group I self-splicing intron P4-P6 domain mutant U131A (with isopropanol soaking); Group I self-splicing intron P4-P6 domain 6bk8 2 135 3.3 RF00004 URS000023C730_4932 29146870 0045131 0000348 0005686 4932 gaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuguaacaacuguuguuacggacgggaagaggagacgucgcgacccucgcagucguucuugacuggucgcuugauguuucuucuucccguuc .............................................<<<<<<<...>>>>>>><<<<<<<<<<<.<<<<<<<<<<<<.<<.....<<<<....>>>>.>>>>>>..>>>>>>>>.>>>>>>>>>>> .............................................(((((((...)))))))(((((((((((.((((((((((((.((.....((((....)))).))))))..)))))))).))))))))))) S. cerevisiae spliceosomal post-catalytic P complex; U2 snRNA 6bk8 5 103 3.3 RF00020 URS000053F313_4932 29146870 0000244,0000353 0005682,0046540 4932 ggaggucaacaucaagaacugugggccuuugccuauagaacuuauaacgaacaugguucuugccuuuuaccagaaccauccggguguugucuccauauuuuuu <<<<<.<<<<<<<.....<<<<<<<<....>>>>>>>>..............<<<<<<<<...........>>>>>>>>...>>>>>>>>>>>>......... (((((.(((((((.....((.(((((....))))).)).........((...((((((((.(.......).)))))))).))))))))))))))......... S. cerevisiae spliceosomal post-catalytic P complex; U5 snRNA 6bk8 6 102 3.3 RF00026 URS00006184A9_4932 29146870 0030621 0000244,0000353 0005688,0046540 4932 guucgcgaaguaacccuucguggacauuuggucaauuugaaacaauacagagaugaucagcaguuccccugcauaaggaugaaccguuuuacaaagagauuu <<<<<<<<<<.....>>>>>>>>>>.....................................<<<..<<<.....>>>...>>>.................. ((((.(((((.....))))).)))).....................................(((.((((.....)))..)))).................. S. cerevisiae spliceosomal post-catalytic P complex; U6 snRNA 6boh D 77 3.4 RF00005 URS000041AF00_83333 29731232 0030533 0006412 83333 cgcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca .<<<<<...<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>.>>>>>..... .((((......((.........))...(((((.......))))).......(((.......)))....))))..... Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome; tRNA 6boh IA 77 3.4 RF00005 URS000041AF00_83333 29731232 0030533 0006412 83333 cgcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(......]........)))))))..... Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome; tRNA 6boh IB 77 3.4 RF00005 URS000041AF00_83333 29731232 0030533 0006412 83333 cgcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca .<<<<<...<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>.>>>>>..... .((((......((.........))...(((((.......))))).......(((.......)))....))))..... Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome; tRNA 6boh NC 77 3.4 RF00005 URS000041AF00_83333 29731232 0030533 0006412 83333 cgcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(......]........)))))))..... Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome; tRNA 6bok D 77 3.55 RF00005 URS000041AF00_262724 29731232 0030533 0006412 262724 cgcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..(((.......[...))).(((((.......))))).....(.(.(..]....).).)))))))..... E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome; 16S ribosomal RNA 6bok IA 77 3.55 RF00005 URS000041AF00_262724 29731232 0030533 0006412 262724 cgcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome; 16S ribosomal RNA 6bok GB 77 3.55 RF00005 URS000041AF00_262724 29731232 0030533 0006412 262724 cgcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..(((.......[...))).(((((.......))))).....(.(.(..]....).).)))))))..... E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome; 16S ribosomal RNA 6bok LC 77 3.55 RF00005 URS000041AF00_262724 29731232 0030533 0006412 262724 cgcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome; 16S ribosomal RNA 6bu8 X 77 3.5 RF00005 URS000041AF00_83333 29247757 0030533 0006412 83333 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))..... 70S ribosome with S1 domains 1 and 2 (Class 1); tRNAfMet 6bu8 W 77 3.5 RF00005 URS000041AF00_83333 29247757 0030533 0006412 83333 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))..... 70S ribosome with S1 domains 1 and 2 (Class 1); tRNAfMet 6bu8 Y 76 3.5 RF00005 URS00005AA258_83333 29247757 0030533 0006412 83333 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).(((((.......))))).....(((((..]....)))))))))))).... 70S ribosome with S1 domains 1 and 2 (Class 1); tRNAPhe 6buw QV 77 3.5 RF00005 URS000041AF00_562 30476222 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Thermus thermophilus 70S complex containing 16S G299A ram mutation and empty A site.; P-site tRNA fMet 6buw XV 77 3.5 RF00005 URS000041AF00_562 30476222 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Thermus thermophilus 70S complex containing 16S G299A ram mutation and empty A site.; P-site tRNA fMet 6by1 AV 76 3.94 RF00005 URS000009F4BF_83333 30552154 0030533 0006412 83333 gggugauuagcucagcugggagagcaccucccuuacaaggagggggucggcgguucgaucccgucaucacccacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).(((((.......))))).....(.(((..]....))).)))))))).... E. coli pH03H9 complex; Valine-specific transfer RNA 6by1 AY 76 3.94 RF00005 URS000009F4BF_83333 30552154 0030533 0006412 83333 gggugauuagcucagcugggagagcaccucccuuacaaggagggggucggcgguucgaucccgucaucacccacca .<<<.<<..<<............>>.<.<<<.......>>>.>.....<<<<<.......>>>>>>>.>>>..... .((...(..((.(........).)).(..((.......))..).......(((.......)))..)...).).... E. coli pH03H9 complex; Valine-specific transfer RNA 6by1 AW 76 3.94 RF00005 URS000009F4BF_83333 30552154 0030533 0006412 83333 gggugauuagcucagcugggagagcaccucccuuacaaggagggggucggcgguucgaucccgucaucacccacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).(((((.......))))).....(.(((..]....))).)))))))).... E. coli pH03H9 complex; Valine-specific transfer RNA 6by1 BV 76 3.94 RF00005 URS000009F4BF_83333 30552154 0030533 0006412 83333 gggugauuagcucagcugggagagcaccucccuuacaaggagggggucggcgguucgaucccgucaucacccacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).(((((.......))))).....(.(((..]....))).)))))))).... E. coli pH03H9 complex; Valine-specific transfer RNA 6by1 BW 76 3.94 RF00005 URS000009F4BF_83333 30552154 0030533 0006412 83333 gggugauuagcucagcugggagagcaccucccuuacaaggagggggucggcgguucgaucccgucaucacccacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).(((((.......))))).....(.(((..]....))).)))))))).... E. coli pH03H9 complex; Valine-specific transfer RNA 6bz6 QV 77 3.18 RF00005 URS000041AF00_562 30476222 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Thermus thermophilus 70S complex containing 16S G347U ram mutation and empty A site; tRNA fMet 6bz6 XV 77 3.18 RF00005 URS000041AF00_562 30476222 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Thermus thermophilus 70S complex containing 16S G347U ram mutation and empty A site; tRNA fMet 6bz7 QV 77 3.68 RF00005 URS000041AF00_562 30476222 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Thermus thermophilus 70S containing 16S G299A point mutation and near-cognate ASL Leucine in A site.; tRNA fMet 6bz7 QW 76 3.68 RF00005 URS000041AF00_562 30476222 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacc .<<<<<<..<<<...........>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>.... .((((((..((((.........)))).(((((.......))))).....(.(((.......))).))))))).... Thermus thermophilus 70S containing 16S G299A point mutation and near-cognate ASL Leucine in A site.; tRNA fMet 6bz7 XV 77 3.68 RF00005 URS000041AF00_562 30476222 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Thermus thermophilus 70S containing 16S G299A point mutation and near-cognate ASL Leucine in A site.; tRNA fMet 6bz7 XW 76 3.68 RF00005 URS000041AF00_562 30476222 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacc .<<<<<<..<<<...........>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>.... .((((((..((((.........)))).(((((.......))))).....(.(((.......))).))))))).... Thermus thermophilus 70S containing 16S G299A point mutation and near-cognate ASL Leucine in A site.; tRNA fMet 6bz8 QV 77 3.74 RF00005 URS000041AF00_562 30476222 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(.(((..]....))).)))))))..... Thermus thermophilus 70S containing 16S G347U point mutation and near-cognate ASL Leucine in A site; tRNA fMet 6bz8 QW 77 3.74 RF00005 URS000041AF00_562 30476222 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<...........>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((.........)))).(((((.......))))).....(.(((.......))).)))))))..... Thermus thermophilus 70S containing 16S G347U point mutation and near-cognate ASL Leucine in A site; tRNA fMet 6bz8 XV 77 3.74 RF00005 URS000041AF00_562 30476222 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(.(((..]....))).)))))))..... Thermus thermophilus 70S containing 16S G347U point mutation and near-cognate ASL Leucine in A site; tRNA fMet 6bz8 XW 77 3.74 RF00005 URS000041AF00_562 30476222 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<...........>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((.........)))).(((((.......))))).....(.(((.......))).)))))))..... Thermus thermophilus 70S containing 16S G347U point mutation and near-cognate ASL Leucine in A site; tRNA fMet 6c4h x 12 3.1 RF00005 URS00001BBAFC_562 29403017 0030533 0006412 562 cgcgcgcaacca .<<<>>>..... .((()))..... Conformation of methylated GGQ in the peptidyl transferase center during translation termination (PTC region); P-site tRNA fMet 6c4i x 77 3.24 RF00005 URS000041AF00_562 29403017 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Conformation of methylated GGQ in the peptidyl transferase center during translation termination; E-site or P-site tRNA fMet 6c4i y 77 3.24 RF00005 URS000041AF00_562 29403017 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Conformation of methylated GGQ in the peptidyl transferase center during translation termination; E-site or P-site tRNA fMet 6c5l AV 76 3.2 RF00005 URS00005AA258_562 29403017 0030533 0006412 562 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>><<<<<<<.....>>>>>>.>...<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).(((((.......))))).....(((((..]....)))))))))))).... Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus); E-site tRNA PHE OR P-site tRNA PHE (unmodified bases) 6c5l AW 75 3.2 RF00005 URS00005AA258_562 29403017 0030533 0006412 562 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacc <<<<<<...<<<<........>>>>.<<<<.........>>>>.....<<<<<.......>>>>>.>>>>>>... ((((((...((((........))))..(((.........)))..........(.......).....))))))... Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus); E-site tRNA PHE OR P-site tRNA PHE (unmodified bases) 6c5l CV 76 3.2 RF00005 URS00005AA258_562 29403017 0030533 0006412 562 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).(((((.......))))).....(((((..]....)))))))))))).... Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus); E-site tRNA PHE OR P-site tRNA PHE (unmodified bases) 6c5l CW 75 3.2 RF00005 URS00005AA258_562 29403017 0030533 0006412 562 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacc <<<<<<...<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>.>>>>>>... (((((....((((........))))..(((.........)))......(.(((.......))).)..)))))... Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus); E-site tRNA PHE OR P-site tRNA PHE (unmodified bases) 6cae 1w 73 2.6 RF00005 URS00003179F7_562 29625040 0030533 0006412 562 gggugaunagcucagggagagcaccucccunacnaggaggggnucggcggnucgaucccgucaucacccacca <<<<<<...<<<<.....>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>.>>>>>>.... ((((((...((((...[.)))).(((((.......))))).....(.(((..]....))).).)))))).... Crystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution; A-site and E-site tRNAs 6cae 1x 76 2.6 RF00005 URS000041AF00_562 29625040 0030533 0006412 562 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution; P-site tRNA 6cae 1y 74 2.6 RF00005 URS00003179F7_562 29625040 0030533 0006412 562 gggugaunagcucaggggagagcaccucccunacnaggaggggnucggcggnucgaucccgucaucacccacca <<<<<<<..<<<<......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... ((((((...((((...[..)))).(((((.......))))).....(((((..]....))))).)))))).... Crystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution; A-site and E-site tRNAs 6cae 2w 73 2.6 RF00005 URS00003179F7_562 29625040 0030533 0006412 562 gggugaunagcucagggagagcaccucccunacnaggaggggnucggcggnucgaucccgucaucacccacca <<<<<<<..<<<<.....>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... ((((((...((((...[.)))).(((((.......))))).....(.(((..]....))).).)))))).... Crystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution; A-site and E-site tRNAs 6cae 2x 76 2.6 RF00005 URS000041AF00_562 29625040 0030533 0006412 562 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(.(((..]....))).)))))))..... Crystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution; P-site tRNA 6cae 2y 73 2.6 RF00005 URS00003179F7_562 29625040 0030533 0006412 562 gggugaunagcucagggagagcaccucccunacnaggaggggnucggcggnucgaucccgucaucacccacca <<<<<<...<<<<.....>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>.>>>>>>.... (((((.(..((((...[.)))).(((((.......))))).......(((..]....)))..).))))).... Crystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution; A-site and E-site tRNAs 6cfj 1w 74 2.8 RF00005 URS00005AA258_562 29410130 0030533 0006412 562 gcccgganagcucaggguagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<......>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((...[..)))).((((.........)))).....(((((..]....)))))))))))).... Crystal structure of the Thermus thermophilus 70S ribosome in complex with histidyl-CAM and bound to mRNA and A-, P-, and E-site tRNAs at 2.8A resolution; A-site and E-site tRNAs 6cfj 1x 76 2.8 RF00005 URS000041AF00_550538 29410130 0030533 0006412 550538 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the Thermus thermophilus 70S ribosome in complex with histidyl-CAM and bound to mRNA and A-, P-, and E-site tRNAs at 2.8A resolution; P-site tRNA 6cfj 1y 74 2.8 RF00005 URS00005AA258_562 29410130 0030533 0006412 562 gcccgganagcucaggguagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<......>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((......)))).((((.........)))).....(((((.......)))))))))))).... Crystal structure of the Thermus thermophilus 70S ribosome in complex with histidyl-CAM and bound to mRNA and A-, P-, and E-site tRNAs at 2.8A resolution; A-site and E-site tRNAs 6cfj 2w 72 2.8 RF00005 URS00005AA258_562 29410130 0030533 0006412 562 cccgganagcucagggagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<..<<<<.....>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((...[.)))).((((.........))))......((((..]....)))).))))))..... Crystal structure of the Thermus thermophilus 70S ribosome in complex with histidyl-CAM and bound to mRNA and A-, P-, and E-site tRNAs at 2.8A resolution; A-site and E-site tRNAs 6cfj 2x 76 2.8 RF00005 URS000041AF00_550538 29410130 0030533 0006412 550538 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the Thermus thermophilus 70S ribosome in complex with histidyl-CAM and bound to mRNA and A-, P-, and E-site tRNAs at 2.8A resolution; P-site tRNA 6cfj 2y 73 2.8 RF00005 URS00005AA258_562 29410130 0030533 0006412 562 gcccgganagcucagggagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<.....>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((...[.)))).((((.........)))).....(((((..]....)))))))))))).... Crystal structure of the Thermus thermophilus 70S ribosome in complex with histidyl-CAM and bound to mRNA and A-, P-, and E-site tRNAs at 2.8A resolution; A-site and E-site tRNAs 6chr A 621 3.7 RF02012,RF00029 URS0000E60B9F_2885 30410046 0000373 2885 gugcgacaagaaguucaggaagggauugaggugaaaguccuccucccgaaucguucaugggagagucuauccagacuugcguagcgaguaaucgcuaggugagaagcucuggagacaauguaccugcccuucaauuggaggugccagggcuaggcuuuguuccuauggcuagcgaaagcgaauacagguuauuaggcgucgugaaaacaaaacucuuucgacauaagggagagguagaugaguuacccuccuuuuuaugggguaacugaacgaucaauaucuaccggcguagacugugagccuaaaggaaacgaaugaaagugucccuuccugggaacuugguaagcccaauagacucccucugggaaaccagaggaggaguaagagcaaucuuacuuaucgucuaguggguaaaagacauaauaggaagcaaaugcuugguuguaacgaucgagauagaaucuguugauuuaagcugaaaggcugcagacuuauuaaauggguguucugcuguauggcguucgcgccuaagcagcagaaugcgugagccgugugcgaugaaagucgcaagcacgguucugauggggggaaaacgagagaucgucuaccuauccaacucaa ..[[..<<<....<<<<<<<<<<<<<.<<<<.......>>>><<<<<<...((((..>>>>>><<<<<.<<<<<<<<<<<.<<<<<<....>>>>>>.>>>>>..]]>>>>>>.........<<<<..................>>>>...>>>>>..<<<<<<..<<<<.<<....>>...<<<<<........<<<<<.................<<.......>>......<<<<<..<<<<<<<<.........>>>>>>>>..))))......>>>>>..>>>>>...>>>>>>>>>...>>>.>>>..........>>>>>>>>>>>>>...>>>....<<<<<.<<<<<..<<<<<<<....>>>>>>>..<<<<<<<<....>>>>>>>>...>>>>>.>>>>>........<<<<<....<<.....<<<<<<<.....>>>>>>>...<<<<......>>>>.<<<<....>>>>>>.....>>>>>.....<<<<<<<<<<<<..<<<<....>>>>...>>>>>>>>>>>>..<<<<<<<<<<<<<<....>>>>>..>>>>>>>>>.....<<<<<...<<........>>...>>>.>>........ ..{{..((((...(((((((((((((.((((.......))))(((((....[[[[[..)))))(((((.((((((((((..((((.(....).))))..))))..}}))))))..........((....................))....)))))..((((((..((((.((....))...(((((.......[((((.(...................(..).........((((((..((((((((.].......)))))))).]]]]]......))))))).)))).[.)))))))))...))).)))..........)))))))))))))..))))....(((((.(((((..(.(((((....))))).)..((((((((....))))))))...))))).)))))........(((((....((.....(((((((.....)))))))..[((((...]..)))).((((....)))))).....))))).....((((((((((((..(((......)))...))))))))))))..((((((((((((((....)))))..))))))))).....(..((...((.(....).))...))...).....].. Crystal structure of a group II intron lariat with an intact 3' splice site (pre-2s state); RNA (621-MER) 6cih A 616 3.676 RF02012,RF00029 URS0000E60BD4_2885 30410046 0000373 2885 gugcgacaagaaguucaggaagggauugaggugaaaguccuccucccgaaucguucaugggagagucuauccagacuugcguagcgaguaaucgcuaggugagaagcucuggagacaauguaccugcccuucaauuggaggugccagggcuaggcuuuguuccuauggcuagcgaaagcgaauacagguuauaggcgucgugaaaacaaaacucuuucgacauaagggagagguagaugaguuacccuccuuuuuaugggguaacugaacgaucaauaucuaccggcguagacugugagccuaaaggaaacgaaugaaagugucccuuccugggaacuugguaagcccaauagacucccucugggaaaccagaggaggaguaagagcaaucuuacuuaucgucuaguggguaaaagacauaauaggaagcaaaugcuugguuguaacgaucgagauagaaucuguugauuuaagcugaaaggcugcagacuuauuaaauggguguucugcuguauggcguucgcgccuaagcagcagaaugcgugagccgugugcgaugaaagucgcaagcacgguucugauggggggaaaacgagagaucgucuaccuauccaac ..[[..<<<....<<<<<<<<<<<<<.<<<<.......>>>><<<<<<.(((({{..>>>>>><<<<<.<<<<<<<<<<<.<<<<<<....>>>>>>.>>>>>..]]>>>>>>......<<.<<<....................>>>>>.>>>>>..<<<<<<..<<<<.<<....>>...<<<<<.......<<<<<.............<<<<<.........>>>>>.<<<<<<..<<<<<<<<.........>>>>>>>>.}}.))))....>>>>>.>>>>>>...>>>>>>>>>...>>>.>>>..........>>>>>>>>>>>>>...>>>....<<<<<.<<<<<..<<<<<<<....>>>>>>>..<<<<<<<<....>>>>>>>>...>>>>>.>>>>>........<<<<<<...<<.....<<<<<<<.....>>>>>>>...<<<<......>>>>.<<<<....>>>>>>....>>>>>>.....<<<<<<<<<<<<..<<<<....>>>>...>>>>>>>>>>>>..<<<<<<<<<<<<<<....>>>>>..>>>>>>>>>...<<<<<.<.<.<<<<....>>>>.>.>>..>>>>.. ..{{..((((...(((((((((((((.((((.......))))((((((.[[[[[[..))))))(((((.(((((((((((.(((((......))))).)))))..}}))))))......(..((((.................).))).).)))))...((((...((((.((....))...(((((......[((((((............(((.............))).((((((..((((((((.].......))))))))..]]]]]]....))))))))))))...)))))))))....)).))...........)))))))))))))..))))....(((((.(.(((..(((((((....)))))))...(((((((....)))))))....))).).)))))........(((((....((.....((.((((.....)))).))..[((((...]..)))).((((....)))))).....))))).....((((((((((((..((((....))))...))))))))))))..((((((((((((((....)))))..)))))))))...(((..((...(((......)))...))...))).. Crystal structure of a group II intron lariat in the post-catalytic state; RNA (696-MER) 6ck4 A 101 3.097 RF00442 URS0000D7794B_583357 29877798 0010468 583357 ugaaaguguaccuaggguuccagccuauguagguguucggaccgagcgguacagguaauaccacaccuuagggacaaaagcccgagaggauagguuucacu <<<<<.<<<<<<..<<..<<<.<<<<<..>>>>>....>>>>>....>>>>>><<<<.>>>>...<<<<.<<<.......>>>..>>>>.....>>>>>.. (((((.((((((..((...((((((((..)))))..).)).))....))))))((((.))))...((((.(((.......)))..)))).....))))).. G96A mutant of the PRPP riboswitch from T. mathranii bound to ppGpp; PRPP riboswitch 6ck4 B 108 3.097 RF00442 URS0000D7794B_583357 29877798 0010468 583357 gugaaaguguaccuaggguuccagccuauuuguagguguucggaccgagcgguacagguauauuauauaccacaccuuagggacaaaagcccgagaggaugguuucac <<<<<<.<<<<<<..<<..<<<.<<<<<....>>>>>....>>>>>....>>>>>><<<<<<<.>>>>>>>...<<<<.<<<.......>>>..>>>>....>>>>>> ((((((.((((((..((...((((((((....)))))..).)).))....))))))(((((((.)))))))...((((.(((.......)))..))))....)))))) G96A mutant of the PRPP riboswitch from T. mathranii bound to ppGpp; PRPP riboswitch 6ck4 C 108 3.097 RF00442 URS0000D7794B_583357 29877798 0010468 583357 gugaaaguguaccuaggguuccagccuauuuguagguguucggaccgagcgguacagguauauuauauaccacaccuuagggacaaaagcccagaggauagguuucac <<<<<<.<<<<<<..<<..<<<.<<<<<<..>>>>>>....>>>>>....>>>>>><<<<<<<.>>>>>>>...<<<<.<<<.......>>>.>>>>.....>>>>>> ((((((.((((((..((...(((((((((..))))))..).)).))....))))))(((((((.)))))))...((((.(((.......))).)))).....)))))) G96A mutant of the PRPP riboswitch from T. mathranii bound to ppGpp; PRPP riboswitch 6ck4 D 101 3.097 RF00442 URS0000D7794B_583357 29877798 0010468 583357 gugaaaguguaccuaggguuccagccuauguagguguucggaccgagcgguacagguaauauaccacaccuuagggacaaaagcccagaggaguuucacgu .<<<<<.<<<<<<..<<..<<<.<<<<<..>>>>>....>>>>>....>>>>>><<<.....>>>...<<<<.<<<.......>>>.>>>>..>>>>>... .((((..((((((..((...((((((((..)))))..).)).))....))))))(((.....)))...((((.(((.......))).))))...))))... G96A mutant of the PRPP riboswitch from T. mathranii bound to ppGpp; PRPP riboswitch 6ck5 A 108 2.49 RF00442 URS0000D7791C_583357 29877798 0010468 583357 gugaaaguguaccuaggguuccagccuauuuguagguguucggaccgagcgguacagguauauuauauaccacaccuuagggacaaaagcccgggaggauagguuuca .<<<<<.<<<<<<..<<..<<<.<<<<<....>>>>>....>>>>>....>>>>>><<<<<<<.>>>>>>>...<<<<.<<<.......>>>..>>>>.....>>>>> .(((((.((((((..((...((((((((....)))))..).)).))....))))))((((((...)))))).[.((((.(((.......))).])))).....))))) PRPP riboswitch from T. mathranii bound to PRPP; PRPP riboswitch 6ck5 B 100 2.49 RF00442 URS0000D7791C_583357 29877798 0010468 583357 gugaaaguguaccuaggguuccagccuauguagguguucggaccgagcgguacagguauaccacaccuuagggacaaaagcccgggaggauagguuucac .<<<<<.<<<<<<..<<..<<<.<<<<<..>>>>>....>>>>>....>>>>>><<....>>...<<<<.<<<.......>>>..>>>>.....>>>>>. ((((((.((((((..((...((((((((..)))))..).)).))....))))))((....)).[.((((.(((.......))).])))).....)))))) PRPP riboswitch from T. mathranii bound to PRPP; PRPP riboswitch 6d6v B 159 4.8 RF00025 URS0000402983_5911 29775593 2.7.7.49 0003720 0007004 0000333 5911 auacccgcuuaauucauucagaucuguaauagaacugucauucaaccccaaaaaucuagugcugauauaaccuucaccaauuagguucaaauaagugguaaugcgggacaaaagacuaucgacauuugauacacuauuuaucaauggaugucuuauuuu ...<<<<<..........<<<..<<.....>>..>>>................................(((...<<<<.<<<))).....>>>.>>>>...>>>>>.....<<<<.<<<...<<.<<<<.........>>>>>>.>>>>>>>...... ...(((((.(........(((.(.........).)))...............................[[[[..{((((.(((]]]]....)))})))).).))))).....((((.((...(.(.(((((.......)))))).).))))).)..... CryoEM structure of Tetrahymena telomerase with telomeric DNA at 4.8 Angstrom resolution; RNA (159-MER) 6d8l A 158 3.14022 RF00028 URS0000D77908_5911 29910185 0000372 5911 gaauugcgggaaaggggucaacagccguacaguaccaagucucaggggaaacuuugagauggccuugcaaaggguaugguaauaagcugacggacaugguccuaaccacgcagccaaguccuaagucaacagaucuucuguugauauggaugcaguuc <...<<<<<<...<<<<<<.....<<<<.<<<.<<...<<<<<<<<<....>>>>>>>>>..<<.......>>.....>>......>>>>>>>....>>>>>>..>>.>>>>..>..<<<<...<<<<<<<<<...>>>>>>>>>..>>>>....... (...((((((...((((((.....((((.(((.(((..(((((((((....)))))))))..((.......))....)))......)))))))....))))))..)).))))..)..((((..((((((((((...))))))))).)))))....... Group I self-splicing intron P4-P6 domain mutant U131A (without isopropanol soaking); Group I self-splicing intron 6d8l B 158 3.14022 RF00028 URS0000D77908_5911 29910185 0000372 5911 gaauugcgggaaaggggucaacagccguacaguaccaagucucaggggaaacuuugagauggccuugcaaaggguaugguaauaagcugacggacaugguccuaaccacgcagccaaguccuaagucaacagaucuucuguugauauggaugcaguuc <...<<<<<<...<<<<<<.....<<<<.<<<.<<...<<<<<<<<<....>>>>>>>>>..<<.......>>.....>>......>>>>>>>....>>>>>>..>>.>>>>..>..<<<<...<<<<<<<<<...>>>>>>>>>..>>>>....... (...((((((...((((((.....((((.(((.(((..(((((((((....)))))))))..((.......))....)))......)))))))....))))))..)).))))..)..((((..((((((((((...))))))))).)))))....... Group I self-splicing intron P4-P6 domain mutant U131A (without isopropanol soaking); Group I self-splicing intron 6d8m A 158 3.7 RF00028 URS0000D7792A_5911 29910185 0000372 5911 gaauugcgggaaaggggucaacuuccguucaguaccaagucucaggggaaacuuugagauggccuugcaaaggguaugguaauaagcugacggacaugguccuaaccacgcagccaaguccuaagucaacagaucuucuguugauauggaugcaguuc <...<<<<<<...<<<<<<....<<<<.<<<<.<<...<<<<<<<<<....>>>>>>>>>..<<.......>>.....>>......>>>>>>>>...>>>>>>..>>.>>>>..>..<<<<...<<<<<<<<<...>>>>>>>>>..>>>>....... (...((((((...((((((.....(((.((((.(((..(((((((((....)))))))))..((.......))....)))......)))))))....))))))..)).))))..)..((((..((((((((((...))))))))).)))))....... Group I self-splicing intron P4-P6 domain mutant A125U/G126U; Group I self-splicing intron 6d8m B 159 3.7 RF00028 URS0000D7792A_5911 29910185 0000372 5911 gaauugcgggaaaggggucaacuuccguucaguaccaagucucaggggaaacuuugagauggccuugcaaaggguaugguaauaagcugacggacaugguccuaaccacgcagccaaguccuaagucaacagaucuucuguugauauggaugcaguuca <...<<<<<<...<<<<<<....<<<<.<<<<.<<...<<<<<<<<<....>>>>>>>>>..<<.......>>.....>>......>>>>>>>>...>>>>>>..>>.>>>>..>..<<<<...<<<<<<<<<...>>>>>>>>>..>>>>........ (...((((((...((((((....((((.((((.(((..(((((((((....)))))))))..((.......))....)))......))))))))...))))))..)).))))..)..((((..((((((((((...))))))))).)))))........ Group I self-splicing intron P4-P6 domain mutant A125U/G126U; Group I self-splicing intron 6d8n A 159 3.95427 RF00028 URS0000D77909_5911 29910185 0000372 5911 gaauugcgggaaaggggucaacagccguucaauaccaagucucaggggaaacuuugagauggccuugcaaaggguaugguaaaaaagcugacggacaugguccuaaccacgcagccaaguccuaagucaacagaucuucuguugauauggaugcaguuc <...<<<<<<...<<<<<<.....<<<.<<<..<<...<<<<<<<<<....>>>>>>>>>..<<.......>>.....>>........>>>>>>....>>>>>>..>>.>>>>..>..<<<<...<<<<<<<<<...>>>>>>>>>..>>>>....... (...((((((...((((((.....(((.(((..(((..(((((((((....)))))))))..((.......))....)))........))))))....))))))..)).))))..)..((((..((((((((((...))))))))).)))))....... Group I self-splicing intron P4-P6 domain mutant G134A/U185AA; Group I self-splicing intron 6d8n B 159 3.95427 RF00028 URS0000D77909_5911 29910185 0000372 5911 gaauugcgggaaaggggucaacagccguucaauaccaagucucaggggaaacuuugagauggccuugcaaaggguaugguaaaaaagcugacggacaugguccuaaccacgcagccaaguccuaagucaacagaucuucuguugauauggaugcaguuc <...<<<<<<...<<<<<<.....<<<.<<<..<<...<<<<<<<<<....>>>>>>>>>..<<.......>>.....>>........>>>>>>....>>>>>>..>>.>>>>..>..<<<<...<<<<<<<<<...>>>>>>>>>..>>>>....... (...((((((...((((((.....(((.(((..(((..(((((((((....)))))))))..((.......))....)))........))))))....))))))..)).))))..)..((((..((((((((((...))))))))).)))))....... Group I self-splicing intron P4-P6 domain mutant G134A/U185AA; Group I self-splicing intron 6d8o A 158 2.80112 RF00028 URS0000D77937_5911 29910185 0000372 5911 gaauugcgggaaaggggucaacagccguucaguaccaagucucaggggaaacuuugagauggccuugcaaaggguaugguaauaagcugacggacaugguccuaaccacgcagccaaguccuaagucuacagaucuucuguugauauggaugcaguuc <...<<<<<<...<<<<<<.....<<<.<<<<.<<...<<<<<<<<<....>>>>>>>>>..<<.......>>.....>>......>>>>>>>....>>>>>>..>>.>>>>..>..<<<<...<<<.<<<<<...>>>>>.>>>..>>>>....... (...((((((...((((((.....(((.((((.(((..(((((((((....)))))))))..((.......))....)))......)))))))....))))))..)).))))..)..((((..((((.(((((...))))).))).)))))....... Group I self-splicing intron P4-P6 domain mutant A230U; Group I self-splicing intron 6d8o B 158 2.80112 RF00028 URS0000D77937_5911 29910185 0000372 5911 gaauugcgggaaaggggucaacagccguucaguaccaagucucaggggaaacuuugagauggccuugcaaaggguaugguaauaagcugacggacaugguccuaaccacgcagccaaguccuaagucuacagaucuucuguugauauggaugcaguuc <...<<<<<<...<<<<<<.....<<<.<<<<.<<...<<<<<<<<<....>>>>>>>>>..<<.......>>.....>>......>>>>>>>....>>>>>>..>>.>>>>..>..<<<<...<<<.<<<<<...>>>>>.>>>..>>>>....... (...((((((...((((((.....(((.((((.(((..(((((((((....)))))))))..((.......))....)))......)))))))....))))))..)).))))..)..((((..((((.(((((...))))).))).)))))....... Group I self-splicing intron P4-P6 domain mutant A230U; Group I self-splicing intron 6d90 3 87 3.2 RF00005 URS00004630EA_562 29856316 0030533 0006412 562 gccgaggugguggaauugguagacacgcuaccuugaggugguagugcccaauagggcuuacggguucaagucccguccucgguacca <<<<<<<..<<<...........>>><<<<<<.......>>>>>>..<.......>...<<<<<.......>>>>>>>>>>>>.... .((((((..(((......[....))).(((((.......))))).(.((.....)))..(((((..]....)))))))))))..... Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.; P-tRNA 6d9j 3 87 3.2 RF00005 URS00004630EA_562 29856316 0030533 0006412 562 gccgaggugguggaauugguagacacgcuaccuugaggugguagugcccaauagggcuuacggguucaagucccguccucgguacca <<<<<<<..<<<...........>>><<<<<<.......>>>>>><<<......>>>..<<<<<.......>>>>>>>>>>>>.... .((((((...((...........))..(((((.......))))).((.(.....)))..(((((.......)))))))))))..... Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.; P-site tRNA 6dlq A 107 2.8 RF00442 URS0000E60BB3_643648 30120360 0010468 643648 ngaaagugugucuaggguuccgcgugcuucggcacggacugguccaagugacacagacgcauucgugcguuacaccggagggauagaagcccaggcggguagguuun .<<<<.<<<<<<..<<...<<<<<<<<....>>>>>...>>>.>>....>>>>>><<<<<<....>>>>>>...<<<..<<<.......>>>...>>>.....>>>> .((((.((((((..((...((((((((....)))))..).)).))....))))))((((((....)))))).[.(((..(((.......))).].))).....)))) PRPP Riboswitch bound to PRPP, manganese chloride soaked structure; PRPP Riboswitch 6dlr A 107 2.656 RF00442 URS0000E60BB3_643648 30120360 0010468 643648 ggaaagugugucuaggguuccgcgugcuucggcacggacugguccaagugacacagacgcauucgugcguuacaccggagggauagaagcccaggcggguagguuun .<<<<.<<<<<<..<<...<<<<<<<<....>>>>>...>>>.>>....>>>>>><<<<<<....>>>>>>...<<<..<<<.......>>>...>>>.....>>>> .((((.((((((..((...((((((((....)))))..).)).))....))))))((((((....)))))).[.(((..(((.......))).].))).....)))) PRPP Riboswitch bound to PRPP, iridium-hexamine soaked structure; PRPP Riboswitch 6dls A 107 2.885 RF00442 URS0000E60BB3_643648 30120360 0010468 643648 ngaaagugugucuaggguuccgcgugcuucggcacggacugguccaagugacacagacgcauucgugcguuacaccggagggauagaagcccaggcggguagguuun .<<<<.<<<<<<..<<...<<<<<<<<....>>>>>...>>>.>>....>>>>>><<<<<<....>>>>>>...<<<..<<<.......>>>...>>>.....>>>> .((((.((((((..((...((((((((....)))))..).)).))....))))))((((((....)))))).[.(((..(((.......))).].))).....)))) PRPP Riboswitch bound to PRPP, thallium acetate soaked structure; PRPP Riboswitch 6dlt A 107 2.9 RF00442 URS0000E60BB3_643648 30120360 0010468 643648 ngaaagugugucuaggguuccgcgugcuucggcacggacugguccaagugacacagacgcauucgugcguuacaccggagggauagaagcccaggcggguagguuun .<<<<.<<<<<<..<<...<<<<<<<<....>>>>>...>>>.>>....>>>>>><<<<<<....>>>>>>...<<<..<<<.......>>>...>>>.....>>>> .((((.((((((..((...((((((((....)))))..).)).))....))))))((((((....)))))).[.(((..(((.......))).].))).....)))) PRPP Riboswitch bound to PRPP, native structure; PRPP Riboswitch 6dnc D 77 3.7 RF00005 URS000041AF00_562 29941456 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon; tRNA(fMet) 6dnc LA 77 3.7 RF00005 URS000041AF00_562 29941456 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon; tRNA(fMet) 6dnr A 107 2.896 RF00442 URS0000E60BB3_643648 30120360 0010468 643648 ngaaagugugucuaggguuccgcgugcuucggcacggacugguccaagugacacagacgcauucgugcguuacaccggagggauagaagcccaggcggguagguuun .<<<<.<<<<<<..<<<..<<<<<<<<....>>>>>...>>>>>>....>>>>>><<<<<<<..>>>>>>>...<<<..<<<.......>>>...>>>.....>>>> .((((.((((((..((...((((((((....)))))..).)).))....))))))((((((....)))))).[.(((..(((.......))).].))).....)))) PRPP Riboswitch bound to PRPP, ligand-free structure; PRPP Riboswitch 6enf x 77 3.2 RF00005 URS00001DEEBE_562 29100052 0030533 0006412 562 cggugauuggcgcagccugguagcgcacuucguucgggacgaaggggucggagguucgaauccucuaucaccgacca <<<<<<<..<<<<.........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))).... Cryo-EM structure of a polyproline-stalled ribosome in the absence of EF-P; proline tRNA 6enj x 77 3.7 RF00005 URS00001DEEBE_562 29100052 0030533 0006412 562 cggugauuggcgcagccugguagcgcacuucguucgggacgaaggggucggagguucgaauccucuaucaccgacca <<<<<<<..<<<<.........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... .((((.(..((((.........)))).(((((.......)))))......((((.......)))).).))))..... Polyproline-stalled ribosome in the presence of A+P site tRNA and elongation-factor P (EF-P); Proline tRNA 6enj 9 77 3.7 RF00005 URS00001DEEBE_562 29100052 0030533 0006412 562 cggugauuggcgcagccugguagcgcacuucguucgggacgaaggggucggagguucgaauccucuaucaccgacca <<<<<<<..<<<<.........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))).... Polyproline-stalled ribosome in the presence of A+P site tRNA and elongation-factor P (EF-P); Proline tRNA 6enu x 77 3.1 RF00005 URS00001DEEBE_562 29100052 0030533 0006412 562 cggugauuggcgcagccugguagcgcacuucguucgggacgaaggggucggagguucgaauccucuaucaccgacca <<<<<<<..<<<<.........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))).... Polyproline-stalled ribosome in the presence of elongation-factor P (EF-P); Proline tRNA 6exn 2 136 3.7 RF00004 URS000023C730_559292 29146871 0045131 0000348 0005686 559292 gaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuuguaacauguuacaauaccauuuuuuggcaggacgggaagaggagacgucgcgacccucgcaggucgcuugauguuucuucuucccguuc ..............................................<<<<<<<>>>>>>>................<<<<<<<<<<<.<<<<<<<<<<<<.<<.....>>>>>>..>>>>>>>>.>>>>>>>>>>> ..............................................((((((()))))))................(((((((((((.((((((((((((.((.....))))))..)))))))).))))))))))) Post-catalytic P complex spliceosome with 3' splice site docked; U2 snRNA 6exn 5 171 3.7 RF00020 URS0000514318_559292 29146871 0000244,0000353 0005682,0046540 559292 aagcagcuuuacagaucaauggcggagggaggucaacaucaagaacugugggccuuuuauugccuauagaacuuauaacgaacaugguucuugccuuuuaccagaaccauccggguguugucuccauaaacagguaaagcuguccguuacugugggcuugccauuuuuugg ..<<<<<<.<<<<<.......<<<<..<<<<<.<<<<<<<.....<<<<<<<<........>>>>>>>>..............<<<<<<<<...........>>>>>>>>...>>>>>>>>>>>>....<<<<......>>>>>>>>..>>>>>>>>.>>>.......... ..(((((((.((((.......((((..(((((.(((((((.....((((.(((........))).)))).........((...((((((((...........)))))))).))))))))))))))....((((......))))))))..)))))))).))).......... Post-catalytic P complex spliceosome with 3' splice site docked; U5 snRNA 6exn 6 102 3.7 RF00026 URS00006184A9_559292 29146871 0030621 0000244,0000353 0005688,0046540 559292 guucgcgaaguaacccuucguggacauuuggucaauuugaaacaauacagagaugaucagcaguuccccugcauaaggaugaaccguuuuacaaagagauuu <<<<<<<<<<.....>>>>>>>>>>.....................................<<<..<<<.....>>>...>>>.................. ((((((((((.....)))))))))).....................................(((.((((.....)))..)))).................. Post-catalytic P complex spliceosome with 3' splice site docked; U6 snRNA 6fec N 75 6.3 RF00005 URS0000326EAC_9606 29401259 0030533 0006412 9606 agcagaguggcgcagcggaagcgugcugggcccauaacccagaggucgauggaucgaaaccauccucugcuacca ....<<<..<<<.........>>>..<<<<.......>>>>.......<<<<.......>>>>.>>>........ (..((((..(((.........))).(((((.......))))).....(((((.......)))))))))..).... Human cap-dependent 48S pre-initiation complex; Transfer RNA (75-MER) 6ff4 2 60 3.4 RF00004 URS00003EE995_9606 29361316 0045131 0000348 0005686 9606 cgcuucucggccuuuuggcuaagaucaaguguaguaucuguucaucaguuuaauaucuga ............................................<.............>. ...............................................(........)... human Bact spliceosome core structure; U2 snRNA 6ff4 5 70 3.4 RF00020 URS0000118C49_9606 29361316 0000244,0000353 0005682,0046540 9606 ucugguuucucuucagaucgcauaaaucuuucgccuuuuacuaaagauuuccguggagaggaacaacucu .....<<<<<<.<<<........<<<<<<<<...........>>>>>>>>...>>>.>>>>>>....... .....(((((...((...((...((((((((.(.......).)))))))).))))...)))))....... human Bact spliceosome core structure; U5 snRNA 6ff4 6 95 3.4 RF00026 URS00001EC8D7_9606 29361316 0030621 0000244,0000353 0005688,0046540 9606 gugcucgcuucggcagcacauauacuaaaauuggaacgauacagagaagauuagcauggccccugcgcaaggaugacacgcaaauucgugaagcg <<<<<.<<....>>>>>>>.....................................<<...<<<.....>>>....>>................. .((((.((....))))))......................................((..((((.....)))..).))................. human Bact spliceosome core structure; U6 snRNA 6ff7 2 60 4.5 RF00004 URS00003EE995_9606 29361316 0045131 0000348 0005686 9606 cgcuucucggccuuuuggcuaagaucaaguguaguaucuguucaucaguuuaauaucuga ............................................<.<<.<....>.>>>. ..............................................((........)).. human Bact spliceosome core structure; U2 snRNA 6ff7 5 70 4.5 RF00020 URS0000118C49_9606 29361316 0000244,0000353 0005682,0046540 9606 ucugguuucucuucagaucgcauaaaucuuucgccuuuuacuaaagauuuccguggagaggaacaacucu .....<<<<<<.<<<........<<<<<<<<...........>>>>>>>>...>>>.>>>>>>....... .....(((((..(((...((...((((((((.(.......).)))))))).)))))..)))))....... human Bact spliceosome core structure; U5 snRNA 6ff7 6 95 4.5 RF00026 URS00001EC8D7_9606 29361316 0030621 0000244,0000353 0005688,0046540 9606 gugcucgcuucggcagcacauauacuaaaauuggaacgauacagagaagauuagcauggccccugcgcaaggaugacacgcaaauucgugaagcg <<<<<.<<....>>>>>>>.....................................<<...<<<.....>>>....>>................. .((((.((....))))))......................................((..((((.....)))..).))................. human Bact spliceosome core structure; U6 snRNA 6frk 1 258 3.7 RF00017,RF01856 URS000075ACE9_9615 29567807 0006617 0005786 9615 gccgggcgcgguggcgcgcgccuguagucccagcuacucgggaggcugaggcaggaggaucgcuucagugcgcuaugccgaucggguguccgcacuaaguucggcaucaauauggugaccucccgggagcgggggaccaccagguugccuaaggaggggugaaccggcccaggucggaaacggagcaggucaaaacucccgugcugaucaguagugggaucgcgccugugaauagccacuguagcgagaccccgucuc <<<<<<<<<<..(((.>>>>>>>....<<<<.)))....>>>>>>>.<<<<<.<<....<<<<<.<<<<<.<<<<........<....<<<.<<<<....<<<<<<<<<<<.<<<<<..<<<<<<....>>>>>>..>>>>>.>>>>........<<<<<......<<<....<<<....>>>....>>>....>>>>>.>>>>>>>.....>>>>>>...>....>.....>>>>>>>>>.>>>>>...>>.>>>>> ((((((((((..[[[.)))))))....((((.]]..]..))))))).(((.(.((....(((((.(((((.((((..........(..(((.((((....(((((((((((.(((((..((((((....))))))..))))).))))......(.(((((.....((((.....((....)).....))))...))))))))))))).....))))))...)...)......))))))))).)))))...)).).))) Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex; Canis lupus familiaris RNA, 7SL, cytoplasmic 1 (RN7SL1), SRP RNA 6fyx 1 75 3.5 RF00005 URS00002CB170_4932 30475211 0030533 0006412 4932 agcgccgunncgcagnggaagcgcncagggcucaunacccugaunnnnucggaucgnaaccgngcggcgcuacca <<<<<<<..<<<<.......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((....[..)))).(((((.......))))).....(((((..]....)))))))))))).... Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C1); tRNAi 6fyy 1 75 3.02 RF00005 URS0000E60B6B_4932 30475211 0030533 0006412 4932 agcgccgunncgcagnggaagcgcncagggcucaunacccugaunnnnucggaucgnaaccgngcggcgcuacca <<<<<<<..<<<<.......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((....[..)))).(((((.......))))).....(((((..]....)))))))))))).... Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C2); tRNAi 6fz0 A 48 2.499 RF01826 URS0000D77952_335992 29931337 0010468,0046500 335992 aggngcauuugaacuguauuguacgccuugcagcaaaaguacuaaaaa <<<<..............[[((((>>>><<<.>>>...)))).]]... [[[[..............((((((]]]]((...))...)))).))... Crystal structure of the metY SAM V riboswitch; metY SAM V (53-MER) 6g7z A 132 3.33595 RF01807 URS0000E60B83_5793 31427457,24821772 0008380 5793 cauccgguaucccaagacaucuucggguggguugggaaguaucauggcuaaucaccaugaugcaaucggguugaacacuuaauuggguuaaaacggugggggacgaucccguaacauccguccuaacggcga ...<<<<...<<<<<..<<<<....>>>>..>>>>>..<<<<<<<<<...(((.>>>>>>>>>..>>>>.......................<<<<..<<<...)))>>>.......>>>><<....>>... ...((((...(((((..((((....))))..)))))..(((((((((...[[[.)))))))))..)))).......................((((..(((...]]]))).......))))((....))... Lariat-capping ribozyme with a shortened DP2 stem loop; Lariat-capping ribozyme 6g90 1 327 4.0 RF00488 URS0000D77947_4932 29995849 0030627 0000395 0005685 4932 auacuuaccuuaagauaucagaggagaucaagaaguccuacugaucaaacaugcgcuuccaagaaggacguuaagcauuuaucauugaacguucauugaacauugaugcaaacuccuuggucacacacacgcggaaggcguguuugcugacgucccuuguuucaaucauugguuaacugauuuuuggggcccuuuguucuucugagaagugacaccaauugguguuaggggagcuggggccuuucaaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnuuuuggaaggucuuggucggguggaucuuauaauuuuugauuua ...........<<<<<<<<<<<<<<..........>>>>.>>>>><<<<<<<<<.<<<<....<<<<<.<<<..<<<<.<.<<<.<<<<..>>>>.>>>.....>>>>>.>>>>>>>>...............>>>>>>>>>>>>><<.<<<<<<<<.<<<<<<<..<<<<<<..>>>>>>..>>>>>>>........<<<<<.>>>>>.<<<<<<<..>>>>>>>.>>>>><<<<<<<<<<<<<<<<<..................................>>>>>>>>>>>>>>>>>>>..>>>>>>>>............... ...........((((((((((((((..........)))).)))))((((((.((.((((....(((((.(((..(((((..(((.((((())))).))).....))))).))))))))...(........)..)))))).))))))(..(((((((.((...(((..((..((()))..))..)))...)........(((((.))))).(((((((())))))))).))))((...(.((((.(((((..................................))))).)))).)...))))..).))))))............... Prespliceosome structure provides insight into spliceosome assembly and regulation (map A2); U1 snRNA,U1 snRNA,U1 snRNA,U1 snRNA,U1 snRNA 6g90 2 143 4.0 RF00004 URS0000D77935_4932 29995849 0045131 0000348 0005686 4932 aaguguaguaucuguucuuuucaguguaacaacugaaaugaccuaggcucauacacauuuuuuggcaggacgggaagaggagacgucgcgacccucgcagagucguucuugacuuggucgcuugauguuucuucuucccguuc ...................<<<<<<......>>>>>><<<<<<..>>.>>>>................<<<<<<<<<<.<<<<<<<<<<<<.<<.....<<<<<<....>>>>>>>>>>>>..>>>>>>>>.>>>>>>>>>>. ...................((((((......))))))((((((())).))))...............(.(((((((((.((((((((((((.((......(((((....))))).))))))..)))))))).))))))))).) Prespliceosome structure provides insight into spliceosome assembly and regulation (map A2); U2 snRNA 6gaw BB 67 3.2 RF00005 URS0000D77942_9823 30089917 0030533 0006412 9823 guuaauguagcuuaaucaaagcaaggcacugaaaaugccuagaugagccucagcuccauaaacacca <<<.<<<..<<<.......>>>.<<<<<.......>>>>>....<<<<....>>>>>>>.>>>.... (((.(((..(((.......))).(((((.......)))))....((((....))))))).))).... Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the complete 55S ribosome.; tRNA-Phe, mitochondrial 6gb2 BB 67 3.2 RF00005 URS0000D77942_9823 30089917 0030533 0006412 9823 guuaauguagcuuaaucaaagcaaggcacugaaaaugccuagaugagccucagcuccauaaacacca <<<.<<<..<<<.......>>>.<<<<<.......>>>>>....<<<<....>>>>>>>.>>>.... (((.(((..(((.......))).(((((.......)))))....((((....))))))).))).... Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 39S ribosomal subunit.; CP tRNAPhe, mitochondrial 6gml P 17 3.2 RF00250 URS0000D7794F_11676 30135580 0035195 0016442 11676 uaacuagggaacccacu ................. ................. Structure of paused transcription complex Pol II-DSIF-NELF; TAR RNA 6gq1 AX 76 4.4 RF00005 URS000011107D_559292 29886014 0030533 0006412 559292 gcggauuuagcucaguugggagagcgccagacugaagaucuggagguccuguguucgauccacagaauucgcacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((.(((..((((.....[..)))).(((((.......))))).....(((((..]....)))))))).))).... Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin); Transfer RNA - Phe 6gqb AX 76 3.9 RF00005 URS000011107D_559292 29886014 0030533 0006412 559292 gcggauuuagcucaguugggagagcgccagacugaagaucuggagguccuguguucgauccacagaauucgcacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).(((((.......))))).....(((((..]....)))))))))))).... Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin); Transfer RNA - Phe 6gqv AY 76 4.0 RF00005 URS000011107D_4932 29886014 0030533 0006412 4932 gcggauuuagcucaguugggagagcgccagacugaagaucuggagguccuguguucgauccacagaauucgcacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).(((((.......))))).....(((((..]....)))))))))))).... Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP); Transfer RNA - Phe 6gsj 1K 74 2.96 RF00005 URS00004A988A_83333 29931292 0030533 0006412 83333 gcugauauagcucagnggagagcgcacccuuggunagggugaggucggcagnucgacucugccuaucagcacca <<<..<...<<<<......>>>>.<<<<<<.....>>>>>>......<<<<.......>>>>..>..>>>.... .(.(......(((......)))..(((((.......)))))......((((.......))))....).)..... Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAThr in the A-site; tRNAThr 6gsj 2K 77 2.96 RF00005 URS000041AF00_83333 29931292 0030533 0006412 83333 cgcggggnggagcagccugguagcucgucgggnucauaacccgaagnucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAThr in the A-site; tRNAfMet 6gsj 3K 72 2.96 RF00005 URS00005B2D1B_83333 29931292 0030533 0006412 83333 gcugauauagcucaguagagcgcacccuugguaagggugaggucggcaguucgaaucugccuaucagcacca <<<<.....<<<<....>>>>.<<<<<<.....>>>>>>.......<<<.......>>>.....>>>>.... (((..(...(.((....)).).(((((.......)))))........((.......))....)..))).... Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAThr in the A-site; tRNAThr 6gsj 1L 74 2.96 RF00005 URS00004A988A_83333 29931292 0030533 0006412 83333 gcugauauagcucagnggagagcgcacccuuggunagggugaggucggcagnucgacucugccuaucagcacca <<<<<<<..<<<<......>>>>.<<<<<<.....>>>>>>......<<<<.......>>>>.>>>>>>>.... .........(((........))).(((((.......)))))......((((.......))))............ Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAThr in the A-site; tRNAThr 6gsj 2L 77 2.96 RF00005 URS000041AF00_83333 29931292 0030533 0006412 83333 cgcggggnggagcagccugguagcucgucgggnucauaacccgaagnucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAThr in the A-site; tRNAfMet 6gsj 3L 72 2.96 RF00005 URS00005B2D1B_83333 29931292 0030533 0006412 83333 gcugauauagcucaguagagcgcacccuugguaagggugaggucggcagnucgaaucugccuaucagcacca <<<<<<<..<<<<....>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((....((.(.[..).)).(((((.......)))))....](((((.......)))))..))))).... Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAThr in the A-site; tRNAThr 6gsk 1K 74 3.36 RF00005 URS00004A988A_83333 29931292 0030533 0006412 83333 gcugauauagcucagnggagagcgcacccuuggunagggugaggucggcagnucgacucugccuaucagcacca <<<..<...<<<<......>>>>.<<<<<<.....>>>>>>......<<<<.......>>>>..>..>>>.... ...(....................(((((.......))))).......(((.......))).....)....... Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site; tRNAThr 6gsk 2K 77 3.36 RF00005 URS000041AF00_562 29931292 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site; tRNAfMet 6gsk 3K 72 3.36 RF00005 URS00005B2D1B_562 29931292 0030533 0006412 562 gcugauauagcucaguagagcgcacccuugguaagggugaggucggcaguucgaaucugccuaucagcacca <<<<.....<<<<....>>>>.<<<<<<.....>>>>>>.......<<<.......>>>.....>>>>.... (((..(...(.((....)).).(((((.......)))))........((.......))....)..))).... Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site; tRNAThr 6gsk 1L 74 3.36 RF00005 URS00004A988A_83333 29931292 0030533 0006412 83333 gcugauauagcucagnggagagcgcacccuuggunagggugaggucggcagnucgacucugccuaucagcacca <<<<<<...<<<<......>>>>.<<<<<<.....>>>>>>......<<<<.......>>>>..>>>>>>.... ...(.....((..........)).(((((.......)))))......((.(.......).))....)....... Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site; tRNAThr 6gsk 2L 77 3.36 RF00005 URS000041AF00_562 29931292 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).((((.........)))).....(((((..]....)))))))))))..... Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site; tRNAfMet 6gsk 3L 72 3.36 RF00005 URS00005B2D1B_562 29931292 0030533 0006412 562 gcugauauagcucaguagagcgcacccuugguaagggugaggucggcaguucgaaucugccuaucagcacca <<<<<<<..<<<<....>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... ((((((...(.((....)).).(((((.......))))).....((.((.......)).)).)))))).... Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site; tRNAThr 6gsl 2K 77 3.16 RF00005 URS000057545F_83333 29931292 0030533 0006412 83333 cgcggggnggagcagcccgguagcucgucgggnucauaacccgaagnucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAArg in the A-site; tRNAfMet 6gsl 3K 73 3.16 RF00005 URS000077ECB7_83333 29931292 0030533 0006412 83333 gcaucuguagcucagcggagaguacucggcuacgaaccgagcggucggagguucgaaccucccggaugcacca <<<<<<...<<<<......>>>>.<<<<<.......>>>>>.....<<<<<......>>>>>.>>>>>>.... (((...(....((......))...((((.........)))).....(((((......))))))...))).... Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAArg in the A-site; tRNAArg 6gsl 2L 77 3.16 RF00005 URS000057545F_83333 29931292 0030533 0006412 83333 cgcggggnggagcagcccgguagcucgucgggnucauaacccgaagnucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAArg in the A-site; tRNAfMet 6gsl 3L 74 3.16 RF00005 URS000077ECB7_83333 29931292 0030533 0006412 83333 gcaucuguagcucagcuggagaguacucggcuacgaaccgagcggucggagguucgaaccucccggaugcacca <<<<<<...<<<<.......>>>>.<<<<<.......>>>>>.....<<<<<......>>>>>.>>>>>>.... ((((..(...(((.......)))..((((.........)))).....(((((......))))))..)))).... Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAArg in the A-site; tRNAArg 6gsm 1 74 5.15 RF00005 URS0000E60B6B_559292 34648019,26212456 0030533 0006412 559292 agcgccgunncgcagnggaagcgcncagggcucaunacccugaunnnnucggaucgnaaccgngcggcgcuacc <<<<<<<..<<<<.......>>>>.<<<<<.......>>>>>.......<<<.......>>>..>>>>>>>... ((((((([.((((.]..[..)))).(((((.......))))).....(.(((..]....))).))))))))... Structure of a partial yeast 48S preinitiation complex in open conformation.; Met-tRNAi 6gsn 1 75 5.75 RF00005 URS000080E1DE_559292 34648019,26212456 0030533 0006412 559292 agcgccguggcgcaguggaagcgcgcaggucucauaaaccugauguccucggaucgaaaccgagcggcgcuacca <<<<<<<..<<<<.......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))).... Structure of a partial yeast 48S preinitiation complex in closed conformation; tRNAi (75-MER) 6gwt x 77 3.8 RF00005 URS000041AF00_562 30076302 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Cryo-EM structure of an E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and Pint-tRNA (State I); fMet-tRNA 6gxm x 77 3.8 RF00005 URS000041AF00_562 30076302 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Cryo-EM structure of an E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and Pint-tRNA (State II); fMet-tRNA 6gxn x 77 3.9 RF00005 URS000041AF00_562 30076302 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Cryo-EM structure of an E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and Pint-tRNA (State III); fMet-tRNA 6gxo x 77 3.9 RF00005 URS00001BBAFC_562 30076302 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaagaucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>......<<<.........>>>.>>>>>>..... .((((((..((((......[..)))).(((((.......))))).......((...].....))..))))))..... Cryo-EM structure of a rotated E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and P/E-tRNA (State IV); fMet-tRNA 6gyv A 190 2.50004 RF01807 URS000080E1A7_5793 24821772 0008380 5793 cauccgguaucccaagacaaucuucggguuggguugggaaguaucauggcuaaucaccaugaugcaaucggguugaacacuuaauuggguuaaaacggugggggacgaucccguaacauccguccuaacggcgacagacugcacggcccugccucagguguguccaaugaacagucguuccgaaaggaag ...<<<<...<<<<<..<<<<<....>>>>>..>>>>>..<<<<<<<<<...<<<.>>>>>>>>>..>>>>.[[[.<<<<......<<<<<...<<<<..(((...>>>))).......>>>><<....>>.....(((((...>>>>>.<<<<.>>>>>>>>.]]]....))))).<<<<....>>>>. ..{((((...(((((..(((((....)))))..)))))..(((((((((...[[[.)))))))))..)))).(((.((((......(((((}..((((..(((...]]]))).......))))((....)).....[[[[[...))))).((((.)))))))).)))....]]]]].((((....)))). Lariat-capping ribozyme (circular permutation form); Lariat-capping ribozyme 6gz3 Bw 76 3.6 RF00005 URS000028779A_4932 30517857 0030533 0006412 4932 gcggacuuagcucaguugggagagcgccagacugaagaucuggagguccuguguucgauccacagaguucgcacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((.(((..((((.....[..)))).(((((.......))))).....(((((..]....)))))))).))).... tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1); pe/E-site-tRNA 6gz4 Bw 76 3.6 RF00005 URS000028779A_9986 30517857 0030533 0006412 9986 gcggacuuagcucaguugggagagcgccagacugaagaucuggagguccuguguucgauccacagaguucgcacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((.(((..((((.....[..)))).(((((.......))))).....(((((..]....)))))))).))).... tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2); pe/E-site-tRNA 6gz5 Bw 76 3.5 RF00005 URS000028779A_4932 30517857 0030533 0006412 4932 gcggacuuagcucaguugggagagcgccagacugaagaucuggagguccuguguucgauccacagaguucgcacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((.(((..((((.....[..)))).(((((.......))))).....(((((..]....)))))))).))).... tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3); E/E-site-tRNA 6h4n w 77 3.0 RF00005 URS0000D77936_679895 30177741 0030533 0006412 679895 cgcgggguggagcagccugguagcucgucuggcucauaaccagaagaucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(.(((..]....))).)))))))..... Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - 70S Hibernating E. coli Ribosome; tRNA 6h58 w 77 7.9 RF00005 URS0000D77936_679895 30177741 0030533 0006412 679895 cgcgggguggagcagccugguagcucgucuggcucauaaccagaagaucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(.(((..]....))).)))))))..... Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - Full 100S Hibernating E. coli Ribosome; tRNA Mixture 6h58 ww 77 7.9 RF00005 URS0000D77936_679895 30177741 0030533 0006412 679895 cgcgggguggagcagccugguagcucgucuggcucauaaccagaagaucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(.(((..]....))).)))))))..... Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - Full 100S Hibernating E. coli Ribosome; tRNA Mixture 6ha1 x 87 3.1 RF00005 URS00004630EA_562 30126986 0030533 0006412 562 gccgaggugguggaauugguagacacgcuaccuugaggugguagugcccaauagggcuuacggguucaagucccguccucgguacca <<<<<<<..<<<...........>>><<<<<<.......>>>>>><<<<....>>>>..<<<<<.......>>>>>>>>>>>>.... .((((((..(((......[....))).(((((.......))))).((.(.....)))..(((((..]....)))))))))))..... Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin; P-tRNA 6ha8 x 75 3.5 RF00005 URS0000D77907_562 30126986 0030533 0006412 562 gccgaggugguggaauugguagacacgcuaccuugaggugguaguuuacggguucaagucccguccucgguacca <<<<<<<..<<<...........>>><<<<<<.......>>>>>>..<<<<<.......>>>>>>>>>>>>.... (((((((..(((.....[.....))).(((((.......)))))...(((((..]....)))))))))))).... Cryo-EM structure of the ABCF protein VmlR bound to the Bacillus subtilis ribosome; P-tRNA(Leu) 6hag A 43 NA RF01727 URS0000E60BAC_1224 30590743 0010468,0046500 1224 gucacaacggcuuccugacguggcagauugaauuauuggagca <<<<<....[[.(((....>>>>>.............)))]]. (((((..(.[[[.[[.)..))))).............]]]]]. The structure of the SAM/SAH-binding riboswitch.; SAM Riboswitch 6hcj q3 74 3.8 RF00005 URS000080E2D5_9986 30293783 0030533 0006412 9986 gcccggauagcucaggguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca ..<<<....<<<........>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>..>.>>..... .(((.(...((.(...[..).))..((((.......))))......(.(((..]....))).)..))))..... Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs; A/P RNA 6hcj 33 75 3.8 RF00005 URS0000326EAC_9986 30293783 0030533 0006412 9986 agcagaguggcgcagcggaagcgugcugggcccauaacccagaggucgauggaucgaaaccauccucugcuacca <<<<<<<..<<<<.......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((....[..)))).((((.........)))).....(((((..]....)))))))))))).... Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs; P/E tRNA 6hcq q3 74 6.5 RF00005 URS000080E2D5_9986 30293783 0030533 0006412 9986 gcccggauagcucaggguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca ..<<<....<<<........>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>..>.>>..... .(((.(...((.(...[..).))..((((.......))))......(.(((..]....))).)..))))..... Structure of the rabbit collided di-ribosome (collided monosome); A/P tRNA 6hcq 33 75 6.5 RF00005 URS0000326EAC_9986 30293783 0030533 0006412 9986 agcagaguggcgcagcggaagcgugcugggcccauaacccagaggucgauggaucgaaaccauccucugcuacca <<<<<<<..<<<<.......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((....[..)))).((((.........)))).....(((((..]....)))))))))))).... Structure of the rabbit collided di-ribosome (collided monosome); P/E tRNA 6hd7 A 76 3.4 RF00005 URS000042DDAB_4932 30559462 0030533 0006412 4932 gggucguuagcucaguugguagagcaguugacuuuuaaucaauuggucgcagguucgaauccugcacgacccacca <<<<<<<..<<<<........>>>><<<<<<.......>>>>>>....<<<<.........>>>>>>>>>>>.... (((.((...((((........))))((((((.......)))))).....(.((.......)).)..)).))).... Cryo-EM structure of the ribosome-NatA complex; tRNA 6hd7 B 77 3.4 RF00005 URS000009EE82_4932 30559462 0030533 0006412 4932 ggagcgguaguucagucgguuagaauaccugccugucacgcagggggucgcggguucgagucccguccguuccgcca <<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((.(((...(((.........)))..(((((.......)))))......((((.......)))).))).))).... Cryo-EM structure of the ribosome-NatA complex; P-site tRNA 6htq v 87 4.5 RF00005 URS00004630EA_224308 32937119 0030533 0006412 224308 gccgaggugguggaauugguagacacgcuaccuugaggugguagugcccaauagggcuuacggguucaagucccguccucgguacca <<<<<<<..<<<...........>>><<<<<<.......>>>>>><<<<....>>>>..<<<<<.......>>>>>>>>>>>>.... (((((((..(((...........))).(((((.......))))).((((....))))..(((((.......)))))))))))).... Stringent response control by a bifunctional RelA enzyme in the presence and absence of the ribosome; P-tRNA 6htq u 76 4.5 RF00005 URS000024E9F9_224308 32937119 0030533 0006412 224308 gcccggauagcucaguugguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((.(..(((..........)))((((((.......))))).)...((.((.......)).))).))))).... Stringent response control by a bifunctional RelA enzyme in the presence and absence of the ribosome; A/R-tRNA 6htq w 75 4.5 RF00005 URS0000287EC9_224308 32937119 0030533 0006412 224308 cccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... (((((...((((........)))).((((.........))))......((((.......))))..)))))..... Stringent response control by a bifunctional RelA enzyme in the presence and absence of the ribosome; E-tRNA 6i0y V 77 3.2 RF00005 URS000034D020_562 30413621 0030533 0006412 562 cggcacguagcgcagccugguagcgcaccgucauggggugucgggggucggagguucaaauccucucgugccgacca <<<<<<<..<<<<.........>>>>.<<<.<<.....>>.>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((......[..)))).(((.(.......).))).....(((((..]....)))))))))))).... TnaC-stalled ribosome complex with the titin I27 domain folding close to the ribosomal exit tunnel; Proline tRNA 6i7o n 76 5.3 RF00005 URS0000E60BDA_4932 30609991 0030533 0006412 4932 uuccucguggcccaauggucacggcgucuggcuacgaaccagaagauuccagguucaaguccuggcggggaagcca <<<<<<<..<<<..........>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..(((.....[....))).(((((.......))))).....(((((..]....)))))))))))).... The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.; P-site tRNA 6i7o m 75 5.3 RF00005 URS0000E60BA3_4932 30609991 0030533 0006412 4932 uccgauauagcguaacggcuaucacaucacgcuuucaccguggagaccgggguucgacuccccguaucggagcca <<<<<<<..<.<..........>.>.<<<<<.......>>>>>....<<<<<.......>>>>>>>>>>>>.... (((((((..(.(.....[....).).(((((.......)))))....(((((..]....)))))))))))).... The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.; E-site tRNA 6i7o nb 76 5.3 RF00005 URS00008FED3A_4932 30609991 0030533 0006412 4932 gcccggauagcucagucgguagagcaggggauuaggaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... ..(((((..((((........))))..((.(.......).))......((.((.......)).)))))))...... The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.; A/P hybrid tRNA 6i7o mb 77 5.3 RF00005 URS000041AF00_4932 30609991 0030533 0006412 4932 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.; P/E hybrid tRNA 6icz B 97 3.0 RF00020 URS000075BAAE_9606 30728453 0000244,0000353 0005682,0046540 9606 gguuucucuucagaucgcauaaaucuuucgccuuuuacuaaagauuuccguggagaggaacaacucugagucuuaacccaauuuuuugaggccuugc .<<<<<<<<<<<........<<<<<<<<...........>>>>>>>>...>>>>>>>>>>>.................................... .(.(((((((((....(...((((((((.(.......).)))))))).).))))))))).).................................... Cryo-EM structure of a human post-catalytic spliceosome (P complex) at 3.0 angstrom; U5snRNA 6icz F 97 3.0 RF00026 URS00001EC8D7_9606 30728453 0030621 0000244,0000353 0005688,0046540 9606 gugcucgcuucggcagcacauauacuaaaauuggaacgauacagagaagauuagcauggccccugcgcaaggaugacacgcaaauucgugaagcguu <<<<<.<<....>>>>>>>.....................................<<...<<<.....>>>....>>................... (((((.((....))))))).....................................((..((((.....)))..).))................... Cryo-EM structure of a human post-catalytic spliceosome (P complex) at 3.0 angstrom; U6snRNA 6icz H 140 3.0 RF00004 URS00003EE995_9606 30728453 0045131 0000348 0005686 9606 aucgcuucucggccuuuuggcuaagaucaaguguaguaucuguucuuuuaauaucguccucuaccgaggacaauauuaaggauuuuuggagcagggagccacgcaucgaccugguauugcaguaccuccaggaacggugc ...............................................<<<<<<<.<<<<<<....>>>>>>.>>>>>>>................<.....><<<<<<.<<<<<.............>>>>>..>>>>>> ...............................................(((((((.((((((....)))))).)))))))...............(......)(((.((.(((((.............)))))..)).))) Cryo-EM structure of a human post-catalytic spliceosome (P complex) at 3.0 angstrom; U2snRNA 6id0 B 98 2.9 RF00020 URS000075BAAE_9606 30728453 0000244,0000353 0005682,0046540 9606 ugguuucucuucagaucgcauaaaucuuucgccuuuuacuaaagauuuccguggagaggaacaacucugagucuuaacccaauuuuuugaggccuugc ...<<<<<<<<<<........<<<<<<<<.<.......>.>>>>>>>>...>>>>>>>>>>..................................... ....(((((((((....(...((((((((.(.......).)))))))).).)))))))))...................................... Cryo-EM structure of a human intron lariat spliceosome prior to Prp43 loaded (ILS1 complex) at 2.9 angstrom resolution; U5snRNA 6id0 F 97 2.9 RF00026 URS00001EC8D7_9606 30728453 0030621 0000244,0000353 0005688,0046540 9606 gugcucgcuucggcagcacauauacuaaaauuggaacgauacagagaagauuagcauggccccugcgcaaggaugacacgcaaauucgugaagcguu <<<<<.<<<..>>>>>>>>.....................................<<...<<<.....>>>....>>................... (((((.((....))))))).....................................((..((((.....)))..).))................... Cryo-EM structure of a human intron lariat spliceosome prior to Prp43 loaded (ILS1 complex) at 2.9 angstrom resolution; U6snRNA 6id0 H 140 2.9 RF00004 URS00003EE995_9606 30728453 0045131 0000348 0005686 9606 aucgcuucucggccuuuuggcuaagaucaaguguaguaucuguucuuaucauuaauaucguccucuaccgaggacaauauuaaggauuuuuggagcagggaggcaucgaccugguauugcaguaccuccaggaacggugc ......................................................<<<..<<<<<<....>>>>>>..>>>......................<<<<<<.<<<<<.............>>>>>..>>>>>> ...........................................................((((((....))))))...........................(((.((.(((((.............)))))..)).))) Cryo-EM structure of a human intron lariat spliceosome prior to Prp43 loaded (ILS1 complex) at 2.9 angstrom resolution; U2snRNA 6id1 B 98 2.86 RF00020 URS000075BAAE_9606 30728453 0000244,0000353 0005682,0046540 9606 ugguuucucuucagaucgcauaaaucuuucgccuuuuacuaaagauuuccguggagaggaacaacucugagucuuaacccaauuuuuugaggccuugc ...<<<<<<<<<<........<<<<<<<<...........>>>>>>>>...>>>>>>>>>>..................................... ....(((((((((....(...((((((((.(.......).)))))))).).)))))))))...................................... Cryo-EM structure of a human intron lariat spliceosome after Prp43 loaded (ILS2 complex) at 2.9 angstrom resolution; U5snRNA 6id1 F 97 2.86 RF00026 URS00001EC8D7_9606 30728453 0030621 0000244,0000353 0005688,0046540 9606 gugcucgcuucggcagcacauauacuaaaauuggaacgauacagagaagauuagcauggccccugcgcaaggaugacacgcaaauucgugaagcguu <<<<<.<<<..>>>>>>>>.....................................<<...<<<.....>>>....>>................... (((((.((....))))))).....................................((..((((.....)))..).))................... Cryo-EM structure of a human intron lariat spliceosome after Prp43 loaded (ILS2 complex) at 2.9 angstrom resolution; U6snRNA 6id1 H 136 2.86 RF00004 URS00003EE995_9606 30728453 0045131 0000348 0005686 9606 aucgcuucucggccuuuuggcuaagaucaaguguaguaucuguucuuuuaauaucguccucuaccgaggacaauauuaaggauuuuuggagcagggaggcaucgaccugguauugcaguaccuccaggaacggugc ..................................................<<<..<<<<<<....>>>>>>..>>>......................<<<<<<.<<<<<.............>>>>>..>>>>>> .......................................................((((((....))))))...........................(((.((.(((((.............)))))..)).))) Cryo-EM structure of a human intron lariat spliceosome after Prp43 loaded (ILS2 complex) at 2.9 angstrom resolution; U2snRNA 6ip5 zy 75 3.9 RF00005 URS0000416117_9606 31080011 0030533 0006412 9606 ggcucguuggucuagggguaugauucucgcuuagggugcgagaggucccggguucaaaucccggacgagccccca <<<<<<<..<<<.........>>><<<<<<.......>>>>>>....<<<<<.......>>>>>>>>>>>>.... (((((((..(((.....[...)))((((((.......))))))....(((((..]....))))))))))).)... Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii); P-site tRNA 6ip5 zu 75 3.9 RF00005 URS0000416117_9606 31080011 0030533 0006412 9606 ggcucguuggucuagggguaugauucucgcuuagggugcgagaggucccggguucaaaucccggacgagccccca <<<<<<<..<<<.........>>><<<<<<.......>>>>>>....<<<<<.......>>>>>>>>>>>>.... (((((((...((.....[...))..(((((.......))))).....(((((..]....)))))))))))).... Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii); P-site tRNA 6ip6 zy 75 4.5 RF00005 URS0000416117_9606 31080011 0030533 0006412 9606 ggcucguuggucuagggguaugauucucgcuuagggugcgagaggucccggguucaaaucccggacgagccccca <<<<<<<..<<<.........>>><<<<<<.......>>>>>>....<<<<<.......>>>>>>>>>>>>.... (((((((..(((.....[...)))((((((.......))))))....(((((..]....))))))))))).)... Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii); P-site tRNA 6ip8 zy 75 3.9 RF00005 URS0000416117_9606 31080011 0030533 0006412 9606 ggcucguuggucuagggguaugauucucgcuuagggugcgagaggucccggguucaaaucccggacgagccccca <<<<<<<..<<<.........>>><<<<<<.......>>>>>>....<<<<<.......>>>>>>>>>>>>.... (((((((..(((.....[...))).(((((.......))))).....(((((..]....)))))))))))).... Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv); P-site tRNA 6j6g D 179 3.2 RF00020 URS000053F313_559292 30879786 0000244,0000353 0005682,0046540 559292 aagcagcuuuacagaucaauggcggagggaggucaacaucaagaacugugggccuuugccuauagaacuuauaacgaacaugguucuugccuuuuaccagaaccauccggguguugucuccauagaaacagguaaagcuguccguuacugugggcuugccauauuuuuuggaacuuuuc ...<<<<<.<<<<<.......<<<<..<<<<<.<<<<<<<.....<<<<<<<<....>>>>>>>>..............<<<<<<<<...........>>>>>>>>...>>>>>>>>>>>>......<<<<......>>>>>>>>..>>>>>>>>.>>..................... ...((((((.((((........(((..(((((.(((((((.....((((((((....)))))))).........((...((((((((.(.......).)))))))).))))))))))))))......((((......)))))))...)))))))).))..................... Cryo-EM structure of the yeast B*-a2 complex at an average resolution of 3.2 angstrom; U5 snRNA 6j6g E 103 3.2 RF00026 URS00006184A9_559292 30879786 0030621 0000244,0000353 0005688,0046540 559292 guucgcgaaguaacccuucguggacauuuggucaauuugaaacaauacagagaugaucagcaguuccccugcauaaggaugaaccguuuuacaaagagauuua <<<<<<<<<<.....>>>>>>>>>>.....................................<<<..<<<.....>>>...>>>................... ((((((((((.....)))))))))).....................................(((.((((.....)))..))))................... Cryo-EM structure of the yeast B*-a2 complex at an average resolution of 3.2 angstrom; U6 snRNA 6j6g L 208 3.2 RF00004 URS000023C730_559292 30879786 0045131 0000348 0005686 559292 acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuuucauguaacaacuaaugaccucagaggcucaauuuguuacaauacacauuuuuuggcacccaaaauaggacgggaagagacuuuuaaagugagacgucgcgacccucgcaggagucguucuugacuuuuuggucgcuugauguuucucucuucccguuc ....................................................<<<<<<<<.....<.<<<<.>>>>.>....>>>>>>>>...........................<<<<<<<<<<.<<<<<.>>>>><<<<<<<<<<<<.<<......<<<<<<....>>>>>>...>>>>>>..>>>>>>>>..>>>>>>>>>>. ....................................................((((((((.(.....((((.))))....).))))))))..........................(.(((((((((.(((((.)))))((((((((((((.((.......(((((....)))))....))))))..))))))))..))))))))).) Cryo-EM structure of the yeast B*-a2 complex at an average resolution of 3.2 angstrom; U2 snRNA 6j6h D 179 3.6 RF00020 URS000053F313_559292 30879786 0000244,0000353 0005682,0046540 559292 aagcagcuuuacagaucaauggcggagggaggucaacaucaagaacugugggccuuugccuauagaacuuauaacgaacaugguucuugccuuuuaccagaaccauccggguguugucuccauagaaacagguaaagcuguccguuacugugggcuugccauauuuuuuggaacuuuuc ...<<<<<<.<<<<.......<<<<..<<<<<.<<<<<<<.....<<<<<<<<....>>>>>>>>..............<<<<<<<<...........>>>>>>>>...>>>>>>>>>>>>......<<<<......>>>>>>>>..>>>>>>>>.>>..................... ...((((((.((((........(((..(((((.(((((((.....((((((((....)))))))).........((...((((((((.(.......).)))))))).))))))))))))))......((((......)))))))...)))))))).))..................... Cryo-EM structure of the yeast B*-a1 complex at an average resolution of 3.6 angstrom; U5 snRNA 6j6h E 103 3.6 RF00026 URS00006184A9_559292 30879786 0030621 0000244,0000353 0005688,0046540 559292 guucgcgaaguaacccuucguggacauuuggucaauuugaaacaauacagagaugaucagcaguuccccugcauaaggaugaaccguuuuacaaagagauuua <<<<<<<<<<.....>>>>>>>>>>.....................................<<<..<<<.....>>>...>>>................... ((((((((((.....)))))))))).....................................(((.((((.....)))..))))................... Cryo-EM structure of the yeast B*-a1 complex at an average resolution of 3.6 angstrom; U6 snRNA 6j6h L 209 3.6 RF00004 URS000023C730_559292 30879786 0045131 0000348 0005686 559292 acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuuucaguguaacaacuaaugaccucagaggcucaauuuguuacaauacacauuuuuuggcacccaaaauaggacgggaagagacuuuuaaagugagacgucgcgacccucgcaggagucguucuugacuuuuuggucgcuugauguuucucucuucccguuc .....................................................<<<<<<<<.....<.<<<<.>>>>.>....>>>>>>>>...........................<<<<<<<<<<.<<<<<.>>>>><<<<<<<<<<<<.<<......<<<<<<....>>>>>>...>>>>>>..>>>>>>>>..>>>>>>>>>>. .....................................................((((((((.(.....((((.))))....).))))))))..........................(.(((((((((.(((((.)))))((((((((((((.((.......(((((....)))))....))))))..))))))))..))))))))).) Cryo-EM structure of the yeast B*-a1 complex at an average resolution of 3.6 angstrom; U2 snRNA 6j6n D 179 3.86 RF00020 URS000053F313_559292 30879786 0000244,0000353 0005682,0046540 559292 aagcagcuuuacagaucaauggcggagggaggucaacaucaagaacugugggccuuugccuauagaacuuauaacgaacaugguucuugccuuuuaccagaaccauccggguguugucuccauagaaacagguaaagcuguccguuacugugggcuugccauauuuuuuggaacuuuuc ...<<<<<.<<<<<.......<<<<..<<<<<.<<<<<<<.....<<<<<<<<....>>>>>>>>..............<<<<<<<<...........>>>>>>>>...>>>>>>>>>>>>......<<<<......>>>>>>>>..>>>>>>>>.>>..................... ...((((((.((((........(((..(((((.(((((((.....((((((((....)))))))).........((...((((((((.(.......).)))))))).))))))))))))))......((((......)))))))...)))))))).))..................... Cryo-EM structure of the yeast B*-b1 complex at an average resolution of 3.86 angstrom; U5 snRNA 6j6n E 103 3.86 RF00026 URS00006184A9_559292 30879786 0030621 0000244,0000353 0005688,0046540 559292 guucgcgaaguaacccuucguggacauuuggucaauuugaaacaauacagagaugaucagcaguuccccugcauaaggaugaaccguuuuacaaagagauuua <<<<<<<<<<.....>>>>>>>>>>.....................................<<<..<<<.....>>>...>>>................... ((((((((((.....)))))))))).....................................(((.((((.....)))..))))................... Cryo-EM structure of the yeast B*-b1 complex at an average resolution of 3.86 angstrom; U6 snRNA 6j6n L 205 3.86 RF00004 URS000023C730_559292 30879786 0045131 0000348 0005686 559292 acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucaguguaacaacuaaugaccucagaggcucauauuuguuacaauacacauuuuuuggcacccaaaauaggacgggaagagacuuuuaaagugagacgucgcgacccucgcaggagucguucuugacuuuuuggucgcuugauguuucucucuucccguuc ................................................<<<<<<<<..<..<.<<<<.>>>>.>..>..>>>>>>>>...........................<<<<<<<<<<.<<<<<.>>>>><<<<<<<<<<<<.<<......<<<<<<....>>>>>>...>>>>>>..>>>>>>>>..>>>>>>>>>>. ................................................((((((((.((....((((.))))....)).))))))))..........................(.(((((((((.(((((.)))))((((((((((((.((.......(((((....)))))....))))))..))))))))..))))))))).) Cryo-EM structure of the yeast B*-b1 complex at an average resolution of 3.86 angstrom; U2 snRNA 6j6q D 179 3.7 RF00020 URS000053F313_559292 30879786 0000244,0000353 0005682,0046540 559292 aagcagcuuuacagaucaauggcggagggaggucaacaucaagaacugugggccuuugccuauagaacuuauaacgaacaugguucuugccuuuuaccagaaccauccggguguugucuccauagaaacagguaaagcuguccguuacugugggcuugccauauuuuuuggaacuuuuc ...<<<<<<.<<<<.......<<<<..<<<<<.<<<<<<<.....<<<<<<<<....>>>>>>>>..............<<<<<<<<...........>>>>>>>>...>>>>>>>>>>>>......<<<<......>>>>>>>>..>>>>>>>>.>>..................... ...(((((..((((........(((..(((((.(((((((.....((((((((....)))))))).........((...((((((((...........)))))))).))))))))))))))......((((......)))))))...)))).))).))..................... Cryo-EM structure of the yeast B*-b2 complex at an average resolution of 3.7 angstrom; U5 snRNA 6j6q E 103 3.7 RF00026 URS00006184A9_559292 30879786 0030621 0000244,0000353 0005688,0046540 559292 guucgcgaaguaacccuucguggacauuuggucaauuugaaacaauacagagaugaucagcaguuccccugcauaaggaugaaccguuuuacaaagagauuua <<<<<<<<<<.....>>>>>>>>>>.....................................<<<..<<<.....>>>...>>>................... ((((((((((.....)))))))))).....................................(((.((((.....)))..))))................... Cryo-EM structure of the yeast B*-b2 complex at an average resolution of 3.7 angstrom; U6 snRNA 6j6q L 210 3.7 RF00004 URS000023C730_559292 30879786 0045131 0000348 0005686 559292 acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuuucaguguaacaacuaaugaccucagaggcucauauuuguuacaauacacauuuuuuggcacccaaaauaggacgggaagagacuuuuaaagugagacgucgcgacccucgcaggagucguucuugacuuuuuggucgcuugauguuucucucuucccguuc .....................................................<<<<<<<<..<..<.<<<<.>>>>.>..>..>>>>>>>>...........................<<<<<<<<<<.<<<<<.>>>>><<<<<<<<<<<<.<<......<<<<<<....>>>>>>...>>>>>>..>>>>>>>>..>>>>>>>>>>. .....................................................((((((((.((....((((.))))....)).))))))))..........................(.(((((((((.(((((.)))))((((((((((((.((.......(((((....)))))....))))))..))))))))..))))))))).) Cryo-EM structure of the yeast B*-b2 complex at an average resolution of 3.7 angstrom; U2 snRNA 6jdq B 117 2.95 RF01344 URS000197CF53_32630 31668930 0006952 32630 uuaacuuuacguuguagcucccuuucucgaaagagaaccguugcuacaauaaggccgucugaaaagaugugccgcaacgcucugccccuuaaagcucgcuuuaaggggcaucguuua ..........<<<<<<<<..<..<<<<<....>>>>>..>..>>>>>>>>..<<<<<<<<....>>>>>.>>>..<<<<...<<<<<<<<<<<<<..>>>>>>>>>>>>>.>>>>.. ..........((((((((..(..(((((....)))))..)..))))))))..((((((((....))))).)))..((((...(((((((((((((..))))))))))))).)))).. Crystal structure of Nme1Cas9 in complex with sgRNA; sgRNA 6jdv B 143 3.1 RF01344 URS000197CF66_32630 31668930 0006952 32630 ggucacucugcuauuuaacuuuacguuguagcucccuuucucauuucggaaacgaaaugagaaccguugcuacaauaaggccgucugaaaagaugugccgcaacgcucugccccuuaaagcugcuuuaaggggcaucguuuau ........................<<<<<<<<..<..<<<<<<<<<<<....>>>>>>>>>>>..>..>>>>>>>>..<<<<<<<<....>>>>>.>>>..<<<<...<<<<<<<<<<<<<.>>>>>>>>>>>>>.>>>>... ........................((((((((..(..(((((((((((....)))))))))))..)..))))))))..((((((((....))))).)))..((((...(((((((((((((.))))))))))))).))))... Crystal structure of Nme1Cas9 in complex with sgRNA and target DNA (ATATGATT PAM) in catalytic state; sgRNA 6je3 B 117 2.931 RF01344 URS000197CF53_32630 31668930 0006952 32630 ggucacucugcuauuuaacuuuacguuguagcucccuuucucgaaagagaaccguugcuacaauaaggccgucugaaaagaugugccgcaacgcucugccccaggggcaucguuuau ........................<<<<<<<<..<..<<<<<....>>>>>..>..>>>>>>>>..<<<<<<<<....>>>>>.>>>..<<<<...<<<<<<.>>>>>>.>>>>... ........................((((((((..(..(((((....)))))..)..))))))))..((((((((....))))).)))..((((...((((((.)))))).))))... Crystal structure of Nme2Cas9 in complex with sgRNA and target DNA (AGGCCC PAM) with 5 nt overhang; sgRNA 6je4 B 132 3.069 RF01344 URS000197CF53_32630 31668930 0006952 32630 ggucacucugcuauuuaacuuuacguuguagcucccuuucucgaaagagaaccguugcuacaauaaggccgucugaaaagaugugccgcaacgcucugccccuuaaagcuugcuuuaaggggcaucguuuau ........................<<<<<<<<..<..<<<<<....>>>>>..>..>>>>>>>>..<<<<<<<<....>>>>>.>>>..<<<<...<<<<<<<<<<<<<..>>>>>>>>>>>>>.>>>>... ........................((((((((..(..(((((....)))))..)..))))))))..((((((((....))))).)))..((((...(((((((((((((..))))))))))))).))))... Crystal structure of Nme1Cas9-sgRNA-dsDNA dimer mediated by double protein inhibitor AcrIIC3 monomers; sgRNA 6je4 F 132 3.069 RF01344 URS000197CF53_32630 31668930 0006952 32630 ggucacucugcuauuuaacuuuacguuguagcucccuuucucgaaagagaaccguugcuacaauaaggccgucugaaaagaugugccgcaacgcucugccccuuaaagcuugcuuuaaggggcaucguuuau ........................<<<<<<<<..<..<<<<<....>>>>>..>..>>>>>>>>..<<<<<<<<....>>>>>.>>>..<<<<...<<<<<<<<<<<<<..>>>>>>>>>>>>>.>>>>... ........................((((((((..(..(((((....)))))..)..))))))))..((((((((....))))).)))..((((...(((((((((((((..))))))))))))).))))... Crystal structure of Nme1Cas9-sgRNA-dsDNA dimer mediated by double protein inhibitor AcrIIC3 monomers; sgRNA 6je4 L 133 3.069 RF01344 URS000197CF53_32630 31668930 0006952 32630 ggucacucugcuauuuaacuuuacguuguagcucccuuucucgaaagagaaccguugcuacaauaaggccgucugaaaagaugugccgcaacgcucugccccuuaaagcuugcuuuaaggggcaucguuuauc ........................<<<<<<<<..<..<<<<<....>>>>>..>..>>>>>>>>..<<<<<<<<....>>>>>.>>>..<<<<...<<<<<<<<<<<<<..>>>>>>>>>>>>>.>>>>.... ........................((((((((..(..(((((....)))))..)..))))))))..((((((((....))))).)))..((((...(((((((((((((..))))))))))))).)))).... Crystal structure of Nme1Cas9-sgRNA-dsDNA dimer mediated by double protein inhibitor AcrIIC3 monomers; sgRNA 6je4 P 130 3.069 RF01344 URS000197CF53_32630 31668930 0006952 32630 ggucacucugcuauuuaacuuuacguuguagcucccuuucucgaaagagaaccguugcuacaauaaggccgucugaaaagaugugccgcaacgcucugccccuuaaagcgcuuuaaggggcaucguuuau ........................<<<<<<<<..<..<<<<<....>>>>>..>..>>>>>>>>..<<<<<<<<....>>>>>.>>>..<<<<...<<<<<<<<<<<<..>>>>>>>>>>>>.>>>>... ........................((((((((..(..(((((....)))))..)..))))))))..((((((((....))))).)))..((((...((((((((((((())))))))))))).))))... Crystal structure of Nme1Cas9-sgRNA-dsDNA dimer mediated by double protein inhibitor AcrIIC3 monomers; sgRNA 6je9 B 115 3.46 RF01344 URS000197CF53_32630 31668930 0006952 32630 uaacuuuacguuguagcucccuuucucgaaagagaaccguugcuacaauaaggccgucugaaaagaugugccgcaacgcucugccccuuaaagcugcuuuaaggggcaucguuua .........<<<<<<<<..<..<<<<<....>>>>>..>..>>>>>>>>..<<<<<<<<....>>>>>.>>>..<<<<...<<<<<<<<<<<<<.>>>>>>>>>>>>>.>>>>.. .........((((((((..(..(((((....)))))..)..))))))))..((((((((....))))).)))..((((...(((((((((((((.))))))))))))).)))).. Crystal structure of Nme1Cas9-sgRNA dimer mediated by double protein inhibitor AcrIIC3 monomers; sgRNA 6je9 D 113 3.46 RF01344 URS000197CF53_32630 31668930 0006952 32630 uaacuuuacguuguagcucccuuucucgaaagagaaccguugcuacaauaaggccgucugaaaagaugugccgcaacgcucugccccuuaaaggcuuuaaggggcaucguuua .........<<<<<<<<..<..<<<<<....>>>>>..>..>>>>>>>>..<<<<<<<<....>>>>>.>>>..<<<<...<<<<<<<<<<<<.>>>>>>>>>>>>.>>>>.. .........((((((((..(..(((((....)))))..)..))))))))..((((((((....))))).)))..((((...((((((((((((.)))))))))))).)))).. Crystal structure of Nme1Cas9-sgRNA dimer mediated by double protein inhibitor AcrIIC3 monomers; sgRNA 6jfu B 105 3.2 RF01344 URS000197CF53_32630 31668930 0006952 32630 ggucacucugcuauuuaacuuuacguuguagcucccuuucucgaaagagaaccguugcuacaauaaggccggugccgcaacgcucugccccuaggggcaucguuu ........................<<<<<<<<..<..<<<<<....>>>>>..>..>>>>>>>>..<<<....>>>..<<<<...<<<<<<..>>>>>>.>>>>. ........................((((((((..(..(((((....)))))..)..))))))))..((((.).)))..((((...((((((())))))).)))). Crystal structure of Nme2Cas9 in complex with sgRNA and target DNA (AGGCCC PAM); sgRNA 6k0a X 258 4.6 RF00373 URS0000EEAD19_2190 31197137 3.1.26.5 0004526 0008033 0030681 2190 ggagggggcuggugacuuuccccucuuuaagaggggaggaaguuccgcccaccccauuuaugggcagcguccccugagaaggggcgggagaugcagcagaaacgacacggcuccggaagagaugacgaugauagugaaaguugaggacuuccggagaaccggugaaacgggcaucuccccugcccggggugcaagccgguuucggcgcuuagccgaaugucaccgaaauuacagaaggcgggcuauagcccccauuuu <<.<<<<<<<<<<<<<...<<<<<<<...>>>>>>>.....[[.(((((<<<<<<......<<<<<....<<<<<....>>>>>.<<<<<<<<<.............<<<<<<<<<<<.......<...................>..>>>>>>>>..>>>.........>>>>>>>>>.>>>>>>>>>>>...<<<<....>>>>............>>>>>>............)))))]]...>>>>>>>.>>.. ...(((((((((((((...((((((.....)))))).{...[..[[[[[((((((......((((((...(((((....))))).(((((((((.............(((((((((((.....(.(......(.(....).)...).)))))))))..))).........)))))))))))))))))))))...((((....))))............)))))).......}....]]]]].]...)))))))..... cryo-EM structure of an archaeal Ribonuclease P; RPR 6k0a Y 258 4.6 RF00373 URS0000EEAD19_2190 31197137 3.1.26.5 0004526 0008033 0030681 2190 ggagggggcuggugacuuuccccucuuuaagaggggaggaaguuccgcccaccccauuuaugggcagcguccccugagaaggggcgggagaugcagcagaaacgacacggcuccggaagagaugacgaugauagugaaaguugaggacuuccggagaaccggugaaacgggcaucuccccugcccggggugcaagccgguuucggcgcuuagccgaaugucaccgaaauuacagaaggcgggcuauagcccccauuuu <<.<<<<<<<<<<<<<...<<<<<<<...>>>>>>>.....[[.(((((<<<<<<......<<<<<....<<<<<....>>>>>.<<<<<<<<<.............<<<<<<<<<<<.......<...................>..>>>>>>>>..>>>.........>>>>>>>>>.>>>>>>>>>>>...<<<<....>>>>............>>>>>>............)))))]]...>>>>>>>.>>.. ...(((((((((((((...((((((.....)))))).{...[..[[[[[((((((......((((((...(((((....))))).(((((((((.............(((((((((((.....(.(......(.(....).)...).)))))))))..))).........)))))))))))))))))))))...((((....))))............)))))).......}....]]]]].]...)))))))..... cryo-EM structure of an archaeal Ribonuclease P; RPR 6k0b U 83 4.3 RF00005 URS0000EEAD1C_562 31197137 0030533 0006412 562 ggugggguucccgagcggccaaagggagcagacucuaaaucugccgucaucgacuucgaagguucgaauccuucccccaccac <<<<<<<..<<<...........>>>.<<<<<.......>>>>>.<<<...>>>...<<<<<.......>>>>>>>>>>>>.. (((((((..(((...........))).((((.........)))).(((...)))...(((((.......)))))))))))).. cryo-EM structure of archaeal Ribonuclease P with mature tRNA; tRNA 6k0b X 258 4.3 RF00373 URS0000EEAD19_2190 31197137 3.1.26.5 0004526 0008033 0030681 2190 ggagggggcuggugacuuuccccucuuuaagaggggaggaaguuccgcccaccccauuuaugggcagcguccccugagaaggggcgggagaugcagcagaaacgacacggcuccggaagagaugacgaugauagugaaaguugaggacuuccggagaaccggugaaacgggcaucuccccugcccggggugcaagccgguuucggcgcuuagccgaaugucaccgaaauuacagaaggcgggcuauagcccccauuuu <<.<<<<<<<<<<<<<...<<<<<<<...>>>>>>>......[.(((((<<<<<<......<<<<<....<<<<<....>>>>>.<<<<<<<<<.............<<<<<<<<<<<.......<...................>..>>>>>>>>..>>>.........>>>>>>>>>.>>>>>>>>>>>...<<<<....>>>>............>>>>>>............)))))]....>>>>>>>.>>.. ...(((((((((((((...(((((((...))))))).....[..[[[[[((.(((......((((((...(((((....))))).(.(((((((.............(((((((((((.....(.(......(.(....).)...).)))))))))..))).........))))))).)))))))))).))...((((....))))............))))))............]]]]].]...)))))))..... cryo-EM structure of archaeal Ribonuclease P with mature tRNA; RPR 6k0b V 83 4.3 RF00005 URS0000EEAD1C_562 31197137 0030533 0006412 562 ggugggguucccgagcggccaaagggagcagacucuaaaucugccgucaucgacuucgaagguucgaauccuucccccaccac <<<<<<<..<<<...........>>>.<<<<<.......>>>>>.<<<...>>>...<<<<<.......>>>>>>>>>>>>.. (((((((..(((.....[.....))).((((.........)))).(((...)))...(((((..]....)))))))))))).. cryo-EM structure of archaeal Ribonuclease P with mature tRNA; tRNA 6k0b Y 258 4.3 RF00373 URS0000EEAD19_2190 31197137 3.1.26.5 0004526 0008033 0030681 2190 ggagggggcuggugacuuuccccucuuuaagaggggaggaaguuccgcccaccccauuuaugggcagcguccccugagaaggggcgggagaugcagcagaaacgacacggcuccggaagagaugacgaugauagugaaaguugaggacuuccggagaaccggugaaacgggcaucuccccugcccggggugcaagccgguuucggcgcuuagccgaaugucaccgaaauuacagaaggcgggcuauagcccccauuuu <<.<<<<<<<<<<<<<...<<<<<<<...>>>>>>>......[.(((((<<<<<<......<<<<<....<<<<<....>>>>>.<<<<<<<<<.............<<<<<<<<<<<.......<...................>..>>>>>>>>..>>>.........>>>>>>>>>.>>>>>>>>>>>...<<<<....>>>>............>>>>>>............)))))]....>>>>>>>.>>.. ...(((((((((((((...(((((((...))))))).....[..[[[[[((.(((......((((((...(((((....))))).(.(((((((.............(((((((((((.....(.(......(.(....).)...).)))))))))..))).........))))))).)))))))))).))...((((....))))............))))))............]]]]].]...)))))))..... cryo-EM structure of archaeal Ribonuclease P with mature tRNA; RPR 6kc7 B 111 3.3 RF01344 URS000197CF53_32630 31668930 0006952 32630 aacuuuacguuguagcucccuuucucgaaagagaaccguugcuacaauaaggccgucugaaaagaugugccgcaacgcucugccccuuaaagcuuuaaggggcaucguuua ........<<<<<<<<..<..<<<<<....>>>>>..>..>>>>>>>>..<<<<<<<<....>>>>>.>>>..<<<<...<<<<<<<<<<<<>>>>>>>>>>>>.>>>>.. ........((((((((..(..(((((....)))))..)..))))))))..(((((((......)))).)))..((((...(((((((((((()))))))))))).)))).. Crystal structure of Nme1Cas9 in complex with sgRNA and target DNA (ATATGATT PAM) in seed-base paring state; sgRNA 6kc8 B 130 2.9 RF01344 URS000197CF53_32630 31668930 0006952 32630 ggucacucugcuauuuaacuuuacguuguagcucccuuucucgaaagagaaccguugcuacaauaaggccgucugaaaagaugugccgcaacgcucugccccuuaaagcgcuuuaaggggcaucguuuau ........................<<<<<<<<..<..<<<<<....>>>>>..>..>>>>>>>>..<<<<<<<<....>>>>>.>>>..<<<<...<<<<<<<<<<<<..>>>>>>>>>>>>.>>>>... ........................((((((((..(..(((((....)))))..)..))))))))..((((((((....))))).)))..((((...((((((((((((())))))))))))).))))... Crystal structure of WT Nme1Cas9 in complex with sgRNA and target DNA (ATATGATT PAM) in post-cleavage state; sgRNA 6ke6 3A 175 3.4 RF01846 URS0000B21E09_559292 0006396 0005730 559292 gucgacguacuucauaggaucauuucuauaggaaucgucacucuuugacucuucaaaagagccacugaauccaacuugguugaugagucccauaaccuuuguacccagugagaaauugccguugcuauggcgcgaugaucacccauggguggguacaaauggcagucugacaagu .........................................................................<<<<<.................<<<<<<<<<<..<.........<<<<......>>>>........><<<<..>>>>.>>>>>>>>.>>........>>>>> .........................................................................(((((......(..........(((((((((((.(...(.....(((((....))))).)......)((((..))))))))))))).))....)...))))) 3.4 angstrom cryo-EM structure of yeast 90S small subunit preribosome; U3 snoRNA 6las A 55 2.708 RF02885 URS0001A16A77_1683 31844059 0010468 1683 ggcauugugccucgcauugcacuccgcggggcgauaaguccugaaaagggauguc <<<<<<.<<<<<<<<..........>>>>>>>>......<<<....>>>>>>>>> ((((((..(((((((..........))))))).......(((....))))))))) the wildtype SAM-VI riboswitch bound to SAM; RNA (55-MER) 6las B 55 2.708 RF02885 URS0001A16A77_1683 31844059 0010468 1683 ggcauugugccucgcauugcacuccgcggggcgauaaguccugaaaagggauguc <<<<<<.<<<<<<<<..........>>>>>>>>......<<<....>>>>>>>>> ((((((..(((((((..........))))))).......(((....))))))))) the wildtype SAM-VI riboswitch bound to SAM; RNA (55-MER) 6lau A 54 3.109 RF02885 URS0001A16A77_1683 31844059 0010468 1683 gcauugugccucgcauugcacuccgcggggcgauaaguccugaaaagggauguc <<<<<..<<<<<<<..........>>>>>>>.......<<<....>>>>>>>>. (((((..(((((((..........))))))).......(((....)))))))). the wildtype SAM-VI riboswitch bound to SAH; RNA (54-MER) 6lau B 55 3.109 RF02885 URS0001A16A77_1683 31844059 0010468 1683 ggcauugugccucgcauugcacuccgcggggcgauaaguccugaaaagggauguc .<<<<<.<<<<<<<<..........>>>>>>>>......<<<....>>>>>>>>. ((((((..(((.(((..........))).))).......(((....))))))))) the wildtype SAM-VI riboswitch bound to SAH; RNA (54-MER) 6lax A 55 2.7 RF02885 URS0001A16A85_1683 31844059 0010468 1683 ggcaucgugccucgcauugcacuccgcggggcgauaaguccugaaaagggauguc <<<<<<.<<<<<<<<..........>>>>>>>>......<<<....>>>>>>>>> ((((((..(((((((..........))))))).......(((....))))))))) the mutant SAM-VI riboswitch (U6C) bound to SAM; RNA (55-MER) 6lax B 55 2.7 RF02885 URS0001A16A85_1683 31844059 0010468 1683 ggcaucgugccucgcauugcacuccgcggggcgauaaguccugaaaagggauguc .<<<<<.<<<<<<<<..........>>>>>>>>......<<<....>>>>>>>>. ((((((..(((((((..........))))))).......(((....))))))))) the mutant SAM-VI riboswitch (U6C) bound to SAM; RNA (55-MER) 6laz A 55 2.76 RF02885 URS0001A16A77_1683 31844059 0010468 1683 ngcauugugccucgcauugcacuccgcggggcgauaaguccugaaaagggauguc .<<<<<.<<<<<<<<..........>>>>>>>>......<<<....>>>>>>>>. ((((((..(((((((..........))))))).......(((....))))))))) the wildtype SAM-VI riboswitch bound to a N-mustard SAM analog M1; RNA (55-MER) 6laz B 55 2.76 RF02885 URS0001A16A77_1683 31844059 0010468 1683 ngcauugugccucgcauugcacuccgcggggcgauaaguccugaaaagggauguc .<<<<<.<<<<<<<<..........>>>>>>>>......<<<....>>>>>>>>. ((((((..(((((((..........))))))).......(((....))))))))) the wildtype SAM-VI riboswitch bound to a N-mustard SAM analog M1; RNA (55-MER) 6lqp 3A 175 3.2 RF01846 URS0000B21E09_559292 32943522 0006396 0005730 559292 gucgacguacuucauaggaucauuucuauaggaaucgucacucuuugacucuucaaaagagccacugaauccaacuugguugaugagucccauaaccuuuguacccagugagaaauugccguugcuauggcgcgaugaucacccauggguggguacaaauggcagucugacaagu .........................................................................<<<<<.................<<<<<<<<<<..<.........<<<<......>>>>.......>.<<<<..>>>>.>>>>>>>>.>>........>>>>> .........................................................................(((((......(..........(((((((((((.(...(.....((((......)))).)......)((((..))))))))))))).))....)...))))) Cryo-EM structure of 90S small subunit preribosomes in transition states (State A); U3 snoRNA 6lqq 3A 175 4.1 RF01846 URS0000B21E09_559292 32943522 0006396 0005730 559292 gucgacguacuucauaggaucauuucuauaggaaucgucacucuuugacucuucaaaagagccacugaauccaacuugguugaugagucccauaaccuuuguacccagugagaaauugccguugcuauggcgcgaugaucacccauggguggguacaaauggcagucugacaagu .........................................................................<<<<<.................<<<<<<<<<<..<.........<<<<......>>>>.......>.<<<<..>>>>.>>>>>>>>.>>........>>>>> .........................................................................(((((......(..........(((((((((((.(...(.....((((......)))).)......)((((..))))))))))))).))....)...))))) Cryo-EM structure of 90S small subunit preribosomes in transition states (State B); U3 snoRNA 6lqr 3A 175 8.6 RF01846 URS0000B21E09_559292 32943522 0006396 0005730 559292 gucgacguacuucauaggaucauuucuauaggaaucgucacucuuugacucuucaaaagagccacugaauccaacuugguugaugagucccauaaccuuuguacccagugagaaauugccguugcuauggcgcgaugaucacccauggguggguacaaauggcagucugacaagu .........................................................................<<<<<.................<<<<<<<<<<..<.........<<<<......>>>>........><<<<..>>>>.>>>>>>>>.>>........>>>>> .........................................................................(((((......(..........(.(.(((((((.(...(.....((((......)))).)......)((((..))))))))))).)..)....)...))))) Cryo-EM structure of 90S small subunit preribosomes in transition states (State C); U3 snoRNA 6lqs 3A 234 3.8 RF01846 URS0000B21E09_559292 32943522 0006396 0005730 559292 gucgacguacuucauaggaucauuucuauaggaaucgucacucuuugacucuucaaaagagccacugaauccaacuugguugaugagucccauaaccuuuguaccccagagugagaaauagcuuggccgaaucgguucggccacuauauugccguugcauuuuauggcgcgaugaucuugacccauccuaucuucgaagauagggggguggguacaaauggcagucugacaagu .........................................................................<<<<<.................<<<<<<<..<<....<............<<<<<<<<<..>>>>>>>>>.......<<<............>>>........>...<<<..<<<<<<<<<..>>>>>>>>>.>>>.>>.>>>>>.>>........>>>>> .........................................................................(((((......(..........((((((....(....(...(...((...(((((((((())))))))))...))..(((.....().....))).)......).........((((((((()))))))))......)...)))).))....)...))))) Cryo-EM structure of 90S small subunit preribosomes in transition states (State D); U3 snoRNA 6lqt 3A 194 4.9 RF01846 URS0000B21E09_559292 32943522 0006396 0005730 559292 gucgacguacuucauaggaucauuucuauaggaaucgucacucuuugacucuucaaaagagccacugaauccaacuugguugaugagucccauaaccuuuguaccccagagugagaaauugccguugcauuuuauggcgcgaugaucuugacccauccuauagggggguggguacaaauggcagucugacaagu .........................................................................<<<<<.................<<<<<<<..<<....<.........<<<............>>>........>...<<<..<<<<..>>>>.>>>.>>.>>>>>.>>........>>>>> .........................................................................(((((......(..........((((((....(....(...(.....(((.....().....))).)......).........(((..)))......)...)))).))....)...))))) Cryo-EM structure of 90S small subunit preribosomes in transition states (State E); U3 snoRNA 6lqu 3A 175 3.7 RF01846 URS0000B21E09_559292 32943522 0006396 0005730 559292 gucgacguacuucauaggaucauuucuauaggaaucgucacucuuugacucuucaaaagagccacugaauccaacuugguugaugagucccauaaccuuuguacccagugagaaauugccguugcuauggcgcgaugaucacccauggguggguacaaauggcagucugacaagu .........................................................................<<<<<.................<<<<<<<<<<..<.........<<<<......>>>>.......>.<<<<..>>>>.>>>>>>>>.>>........>>>>> .........................................................................(((((......(..........(((((((((((.(...(.....((((......)))).)......)((((..))))))))))))).))....)...))))) Cryo-EM structure of 90S small subunit preribosomes in transition states (State A1); U3 snoRNA 6lqv 3A 175 4.8 RF01846 URS0000B21E09_559292 32943522 0006396 0005730 559292 gucgacguacuucauaggaucauuucuauaggaaucgucacucuuugacucuucaaaagagccacugaauccaacuugguugaugagucccauaaccuuuguacccagugagaaauugccguugcuauggcgcgaugaucacccauggguggguacaaauggcagucugacaagu .........................................................................<<<<<.................<<<<<<<<<<..<.........<<<<......>>>>........><<<<..>>>>.>>>>>>>>.>>........>>>>> .........................................................................(((((......(..........(.(.(((((((.(...(.....((((......)))).)......)((((..))))))))))).)..)....)...))))) Cryo-EM structure of 90S small subunit preribosomes in transition states (State C1); U3 snoRNA 6lt7 C 49 2.7 RF00030 URS00021ED90E_32630 33571640 3.1.-.- 0000171 0006364 0000172 32630 gguccuaggcuacacacugaggacuuguuccuccccuuuccgccuaggg ..<<<<<<<<........<<<<<.....>>>>>........>>>>>>>> ..((((((((........((((((..).)))))........)))))))) Crystal structure of human RPP20-RPP25 proteins in complex with the P3 domain of lncRNA RMRP; 50-mer RNA 6lt7 F 49 2.7 RF00030 URS00021ED90E_32630 33571640 3.1.-.- 0000171 0006364 0000172 32630 gguccuaggcuacacacugaggacuuguuccuccccuuuccgccuaggg ..<<<<<<<<........<<<<<.....>>>>>........>>>>>>>> ..((((((((........((((((..).)))))........)))))))) Crystal structure of human RPP20-RPP25 proteins in complex with the P3 domain of lncRNA RMRP; 50-mer RNA 6lvr D 72 2.85 RF00005 URS000011107D_4932 32719843 0030533 0006412 4932 gcggauuuancucagnngggagagcnccaganunaanaunuggagnucnugugnucgnuccacagaauucgc <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>> (((((((..((((.....[..)))).((((.........)))).....(((((..]....)))))))))))) Crystal structure of the PPR domain of Arabidopsis thaliana protein-only RNase P 1 (PRORP1) in complex with tRNA; yeast phenylalanine tRNA 6lvr B 72 2.85 RF00005 URS000011107D_4932 32719843 0030533 0006412 4932 gcggauuuancucagnngggagagcnccaganunaanaunuggagnucnugugnucgnuccacagaauucgc <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>> (((((((..((((.....[..)))).((((.........)))).....(((((..]....)))))))))))) Crystal structure of the PPR domain of Arabidopsis thaliana protein-only RNase P 1 (PRORP1) in complex with tRNA; yeast phenylalanine tRNA 6lxd D 72 3.9 RF00455,RF00254 URS0001A16A8F_9606 32220645 0035195 0016442 9606 auagcaaugucagcagugccuuagcagcacguaaauuaacugugcugcugaaguaagguugaccauacucua ..<<....<<<<<<..<<<.<<<<<<<<<<<<.<..>.>.>>>>>>>>>>>.>>>..>>>>>>......>>. ..((....(.((.(..(((.(((((((((((..(())..).)))))))))).)))..).))..).....)). Pri-miRNA bound DROSHA-DGCR8 complex; RNA (102-mer) 6me0 A 829 3.6 RF02012,RF00029 URS0000EEAD0D_146786 31348888 0000373 146786 uugcgacgcgaaagcuagccagaugauugucccacuagcccaacaagcuagaacgggaccgguuguucccccaaccguagccuagggaggcaugcgugacugguaacggucaggugugaagcccucccgacaauguagcccgaaccgcaagguugaagcugaauccgugaggaggaagcaacuucaccagugucaggugauagggaacuaggcuugaggguauggugagcacaugcgaagugaugucagaagccucgucacagaccaacaggccaaagacacugauaggccugagccaaaacggcaaauggauaggcuacaucgcucgcucgucgguguacggggacgucaauccaucggggcacagucaccaccuaaccccucgugucaucugguuggaacgcgguaagcccguauccucgccuugaacacucaaggcaggcaaaccguaaggaaugcugaugggggugcggguaugggaugcaggagaaagcgaaugccggucuguaauggaccggauagggguugaggagacaauccaacaucaccccgcccgaaagggagcagacuuccugcuggucucucuuugcgagauagccuguagaaccucuugaauggagacaaggcaaauggcaguggaacaaaccacuggugcggucaccaaccaaacggccgugagguaaagaggcugcaagugcguaucgcaaaggcguucgcgccgguuccucuugaaagaggggcuuugagaggccugagccggauguggggaaacucacaaguccgguucuuagggggcggggauggcaguaaugccucccugcuacccggc ..((..<<<.....<<<<<<<<<<<<<.<<<<<.<<.............>>...>>>>><<<<<<.<<<<<>>>>>>.<<<<..<<<<<<<<<<<.<<<<<<....>>>>>>.>>>>>..))>>>>>>......((..<<<.<<<......>>><..<<<...<<<....>>>...>>>..>.<<<<<.<<<<<.>>>>>..>>>.))..>>>><<<<<<...[[[[.<<....>>...(((((.......(((((............<<<<<<...>>>>>.....>>>>>>.<<<.....>>>..(((((..(..<<<<<<<.........>>>>>>>.>>>>>).....))))).)))))...)))))]]]]....>>>>>>.>>>>>>>>>>>>>...>>>....<<<<<<<<<<<<<<<<<<......>>>>>>.<<<<..<<....>>..>>>>...>>>>>>>>>>>>.......<<<<<<....<<.....<<<<<<<.....>>>>>>>...<<<<<...<.........>......>>>>>.<<<....>>>.>>.....>>>>>>.<<<<<<<<.<<<<<<....<<.<<<<<..<<<<<<...<<<.<<<...<<<.....<<<<<<......>>>>>>.>>>.>>>.>>><<..............>>.>>>>>>>>>>>.>>.....>>>>>>.<<<<....>>>><<<<<<<<<....>>>>>>>>>..>>>>>>>>.<<<<<<<<<<<<<<....>>>>>..>>>>>>>>>...<<<<<<<<<<<.<<<<....>>>>>>>>>>>>.>>>... ..{{..((((....((((((((((((..(((((.((.............))...)))))((((((.[[[[[)))))).((((..(((((((((((.((((((....)))))).)))))..}}))))))......((..(((.((.(.....)))(..((....(((....)))....))..)..((((.[[[[[.))))...))).))..))))((((((...((((.((....))...(((((......{((((((...........((((((...]]]]].....)))))).(((.....)))..(((((..((.(((((((.}.......))))))))]]]]]).....)))))))))))...)))))))))....))))))..))))))))))))..))))....((((((((((.(((((((......))))))..((...((....))...))....).))))))))))...(....(((((....((.....(((((((.....)))))))..[(((((...(.........)....].))))).(((....))).)).....)))))..((((((((.((((((....((.(((((..(((((....(((.(((...(((.....((((((......)))))).))).))).)))((...(......)...))..)))))))))).)).....)))))).((((....))))((((((((......))))))))..)))))))).((((((((((((((....)))))..)))))))))...((((((((((..((((....)))).))))))).)))..) Structure of a group II intron retroelement prior to DNA integration; T.el4h RNA 6mec A 818 3.6 RF02012,RF00029 URS0002617737_146786 31348888 0000373 146786 uugcgacgcgaaagcuagccagaugauugucccacuagcccaacaagcuagaacgggaccgguuguucccccaaccguagccuagggaggcaugcgugacugguaacggucaggugugaagcccucccgacaauguagcccgaaccgcaagguugaagcugaauccgugaggaggaagcaacuucaccagugucaggugauagggaacuaggcuugaggguauggugagcacaugcgaagugaugucagaagccucgucacagaccaacaggccaaagacacugauaggccugagccaaaacggcaaauggauaggcuacaucgcucgcucgucgguguacggggacgucaauccaucggggcacagucaccaccuaaccccucgugucaucugguuggaacgcgguaagcccguauccucgccuugaacacucaaggcaggcaugcugaugggggugcggguaugggaugcaggagaaagcgaaugccggucuguaauggaccggauagggguugaggagacaauccaacaucaccccgcccgaaagggagcagacuuccugcuggucucucuuugcgagauagccuguagaaccucuugaauggagacaaggcaaauggcaguggaacaaaccacuggugcggucaccaaccaaacggccgugagguaaagaggcugcaagugcguaucgcaaaggcguucgcgccgguuccucuugaaagaggggcuuugagaggccugagccggauguggggaaacucacaaguccgguucuuagggggcggggauggcaguaaugccucccugcuacccggcg ..((..<<<<....<<<<<<<<<<<<<.<<<<<.<<.............>>...>>>>><<<<<<.<<<<<>>>>>>.<<<<..<<<<<<<<<<<.<<<<<......>>>>>.>>>>>..))>>>>>>......((..<<<.<<<<....>>>><..<<<...<<<....>>>...>>>..>.<<<<<.<<<<<.>>>>>..>>>.))..>>>><<<<<<...[[[[.<<....>>...(((((.......(((((............<<<<<<...>>>>>.....>>>>>>.<<<.....>>>..(((((.....<<<<<<<.........>>>>>>>.>>>>>......))))).)))))...)))))]]]]....>>>>>>.>>>>>>>>>>>>>..>>>>....<<<<<<<<<<<<<<<<<<......>>>>>>.<<....>>...>>>>>>>>>>>>.......<<<<<<<...<<.....<<<<<<<.....>>>>>>>...<<<<<....................>>>>>.<<<....>>>.>>....>>>>>>>.<<<<<<<<.<<<<<<....<<.<<<<<..<<<<<<...<<<.<<<...<<<.....<<<<<<......>>>>>>.>>>.>>>.>>>.<.............>...>>>>>>>>>>>.>>.....>>>>>>.<<<<<..>>>>><<<<<<<<<....>>>>>>>>>..>>>>>>>>.<<<<<<<<<<<<<<....>>>>>..>>>>>>>>>...<<<<<<<<<<<.<<<<....>>>>>>>>>>>>.>>>.... ..{{..((((....((((((((((((..(((((.((.............))...)))))((((((.[[[[[)))))).((((..((((((((.((.((((.(....).)))).)).))..}}))))))......((..(((.((.(.....)))(..(((...(((....)))...)))..)..((.(.[[[[[.).))...))).))..)))).(((((...((((.((....))...(((((......{((((((...........((((((...]]]]].....)))))).(((.....)))..(((((..((.(((((((.}.......))))))))]]]]]).....)))))))))))...)))))))))....)))))...))))))))))))..))))....(((((((.((((((((((......))))))..(....)....)))).)))))))........(((((....((.....((((((.......))))))..[(((((..................].))))).(((....))).)).....)))))..((((((((.((((((....((.(((((..(((((....(((.(((...(((.....((((((......)))))).))).))).)))..(..(......)..)....)))))))))).)).....)))))).((((....))))(((((((((....)))))))))..)))))))).((.(((((((((((....)))))..)))))).))...(((.(((((((.((((....)))))))))).).))).... Structure of a group II intron retroelement after DNA integration; T.el4h RNA 6mj0 A 101 3.1 RF00233,RF00390 URS0000E60B65_12154 30498211 0006417,0046782 12154 aaguucucgaucuuuaaaaucguuagcucgccaguuagcgaggucugcgaaagcagauaaucgggugcaacucccgcccuuucuccgagggucaucggaac (((....<<<<)))....>>>>....<<<<<......>>>>><<<<<<....>>>>>>...<<<<.......>>>>(((....<<<<.)))....>>>>.. [[[....((((]]]....))))...[(((((..[...)))))((((((....))))))...((((..]....))))[[[.....(((.]]].]..)))... Crystal structure of the complete turnip yellow mosaic virus 3'UTR; RNA (101-MER) 6mj0 B 101 3.1 RF00233,RF00390 URS0000E60B65_12154 30498211 0006417,0046782 12154 aaguucucgaucuuuaaaaucguuagcucgccaguuagcgaggucugcgaaagcagauaaucgggugcaacucccgcccuuucuccgagggucaucggaac .((....<<<<)).....>>>>....<<<<<......>>>>><<<<<<....>>>>>>...<<<<.......>>>>(((....<<<<<)))...>>>>>.. [[[....((((]]]....))))...[(((((..[...)))))((((((....))))))...((((..]....))))[[[....(((((]]].].))))).. Crystal structure of the complete turnip yellow mosaic virus 3'UTR; RNA (101-MER) 6mtb 4 75 3.6 RF00005 URS000086855F_9986 30355441 0030533 0006412 9986 gcccggauagcucagcuguagagcaucagacuuuuaaucugaggguccaggguucaagucccuguucgggcgcca <<<<<<...<<<<.......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>.>>>>>>.... ((.((((..((((.......)))).(((((.......))))).....(((((.......))))))))).)).... Rabbit 80S ribosome with P- and Z-site tRNAs (unrotated state); Z-site tRNA 6mtc 4 75 3.4 RF00005 URS000086855F_9986 30355441 0030533 0006412 9986 gcccggauagcucagcuguagagcaucagacuuuuaaucugaggguccaggguucaagucccuguucgggcgcca <<<<<<...<<<<.......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>.>>>>>>.... ((..(....((((.......)))).(((((.......))))).....(((((.......)))))..)..)).... Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state); Z-site tRNA 6n1d APTN 76 3.2 RF00005 URS00003179F7_562 30936299 0030533 0006412 562 gggugaunagcucagcugggagagcaccucccunacnaggaggggnucggcggnucgaucccgucaucacccacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((........)))).(((((.......)))).)....(.(((.......))).)))))))).... X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State; P-tRNA 6n1d BATN 85 3.2 RF00005 URS00002D9DE2_562 30936299 0030533 0006412 562 ggugggguucccgagcggccaaagggagcagacunuanaucugccgucaucgacuucgaaggnucgaauccuucccccaccacca <<<<<<<..<<<...........>>>.<<<<<.......>>>>>.<<<...>>>...<<<<<.......>>>>>>>>>>>>.... (((((((..(((.....[.....))).((((.........)))).(((...)))...(((((..]....)))))))))))).... X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State; A tRNA 6n1d BPTN 76 3.2 RF00005 URS00003179F7_562 30936299 0030533 0006412 562 gggugaunagcucagcugggagagcaccucccunacnaggaggggnucggcggnucgaucccgucaucacccacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).(((((.......))))).....(.(((..]....))).)))))))).... X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State; P-tRNA 6n5k A 125 3.098 RF00379 URS000197CF5B_9606 0180001 0010468 9606 nguugccgaauccaugauuugguacggaggaaccgcuuuuugggguuaaucugcagugaagcugcaguagggauaccuucugucccgcacccgacagcuaacuccggaggcaauaaaggaaggag ...[[[[....<<<.....>>>..(((((....{........[[[[....<<<<<<.....>>>>>>..(((((.<<<<<<)))))..]]]]....}....)))))..]]]].....>>>>>>.. ...((((....(((.....)))..(((((....(.....{.(((((....((((((.....))))))..(((((.[[[[[[)))))..)))).}).)....)))))..)))).....]]]]]].. Structure of Human pir-miRNA-449c Apical Loop and One-base-pair Fused to the YdaO Riboswitch Scaffold; RNA (125-MER) 6n5n A 125 2.951 RF00379 URS000197CF65_9606 0180001 0010468 9606 nguugccgaauccgaugcucgguacggaggaaccgcuuuuugggguuaaucugcagugaagcugcaguagggauaccuucugucccgcacccgacagcuaacuccggaggcaauaaaggaaggag ...[[[[....<<<<...>>>>..(((((....{........[[[[....<<<<<<.....>>>>>>..(((((.<<<<<<)))))..]]]]....}....)))))..]]]].....>>>>>>.. ...((((....(((.....)))..(((((....(.....{.(((((....((((((.....))))))..(((((.[[[[[[)))))..)))).}).)....)))))..)))).....]]]]]].. Structure of Human pir-miRNA-208a Apical Loop and One-base-pair Fused to the YdaO Riboswitch Scaffold; RNA (125-MER) 6n5o A 126 2.708 RF00379 URS000197CF62_9606 0180001 0010468 9606 nguugccgaauccgaucuggcgguacggaggaaccgcuuuuugggguuaaucugcagugaagcugcaguagggauaccuucugucccgcacccgacagcuaacuccggaggcaauaaaggaaggag ...[[[[....<<<......>>>..(((((....{........[[[[....<<<<<<.....>>>>>>..(((((.<<<<<<)))))..]]]]....}....)))))..]]]].....>>>>>>.. ...((((....(((......)))..(((((....(.....{.(((((....((((((.....))))))..(((((.[[[[[[)))))..)))).}).)....)))))..)))).....]]]]]].. Structure of Human pir-miRNA-202 Apical Loop and One-base-pair Fused to the YdaO Riboswitch Scaffold; RNA (126-MER) 6n5p A 127 2.991 RF00379 URS000197CF7A_9606 0180001 0010468 9606 nguugccgaauccaugucguuugguacggaggaaccgcuuuuugggguuaaucugcagugaagcugcaguagggauaccuucugucccgcacccgacagcuaacuccggaggcaauaaaggaaggag ...[[[[....<<<.......>>>..(((((....{........[[[[....<<<<<<.....>>>>>>..(((((.<<<<<<)))))..]]]]....}....)))))..]]]].....>>>>>>.. ...((((....(((.......)))..(((((....(.....{.(((((....((((((.....))))))..(((((.[[[[[[)))))..)))).}).)....)))))..)))).....]]]]]].. Structure of Human pir-miRNA-340 Apical Loop and One-base-pair Fused to the YdaO Riboswitch Scaffold; RNA (127-MER) 6n5q A 128 2.946 RF00379 URS000197CF57_9606 0180001 0010468 9606 nguugccgaauccaccuagaaaugguacggaggaaccgcuuuuugggguuaaucugcagugaagcugcaguagggauaccuucugucccgcacccgacagcuaacuccggaggcaauaaaggaaggag ...[[[[....<<<........>>>..(((((....{........[[[[....<<<<<<.....>>>>>>..(((((.<<<<<<)))))..]]]]....}....)))))..]]]].....>>>>>>.. ...((((....(((........)))..(((((....(.....{.(((((....((((((.....))))))..(((((.[[[[[[)))))..)))).}).)....)))))..)))).....]]]]]].. Structure of Human pir-miRNA-378a Apical Loop and One-base-pair Fused to the YdaO Riboswitch Scaffold; RNA (128-MER) 6n5s A 123 2.802 RF00379 URS000197CF70_9606 0180001 0010468 9606 nguugccgaauccaaaguugguacggaggaaccgcuuuuugggguuaaucugcagugaagcugcaguagggauaccuucugucccgcacccgacagcuaacuccggaggcaauaaaggaagga ...[[[[....<<<....>>>..(((((....{........[[[[....<<<<<<.....>>>>>>..(((((.<<<<<<)))))..]]]]....}....)))))..]]]].....>>>>>>. ...((((....(((....)))..(((((....(.....{.(((((....((((((.....))))))..(((((.[[[[[[)))))..)))).}).)....)))))..)))).....]]]]]]. Structure of Human pir-miRNA-320b-2 Apical Loop and One-base-pair Stem Fused to the YdaO Riboswitch Scaffold; RNA (123-MER) 6n5t A 126 2.787 RF00379 URS000197CF7C_9606 0180001 0010468 9606 nguugccgaauccccuagaaagguacggaggaaccgcuuuuugggguuaaucugcagugaagcugcaguagggauaccuucugucccgcacccgacagcuaacuccggaggcaauaaaggaaggag ...[[[[....<<........>>..(((((....{........[[[[....<<<<<<.....>>>>>>..(((((.<<<<<<)))))..]]]]....}....)))))..]]]].....>>>>>>.. ...((((....((........))..(((((....(.....{.(((((....((((((.....))))))..(((((.[[[[[[)))))..)))).}).)....)))))..)))).....]]]]]].. Structure of Human pir-miRNA-378a Apical Loop Fused to the YdaO Riboswitch Scaffold; RNA (126-MER) 6n7p R 558 3.6 RF00488 URS000012D749_559292 31485080 0030627 0000395 0005685 559292 auacuuaccuuaagauaucagaggagaguccuacugaucaaacaugcgcuuccaauaguagaaggacguuaagcauuuaucauugaacuauaauuguucauugaagucauugaugcaaacuccuuggucacacacacauacggcgcggaaggcguguuugcugacguuuccauucccuuguuucaaucauugguuaaucccuugauuccuuuggggauuuuuggguuaaacugauuuuuggggcccuuuguuucuucugccuggagaaguuugacaccaaauucaaauugguguuaggggagcuggggccuuucaaaagagagcuuuguagaggcauucuuuuugacuacuuuucucuagcgugccauuuuaguuuuugacggcagauucgaaugaacuuaaguuuaugaugaagguauggcuguugagauuauuuggucgggauuguaguuugaagaugugcucuuuugagcagucucaacuuugcucguucccguuaugggaaaaauuuuggaaggucuugguaggaacggguggaucuuauaauuuuugauuuau ...........<<<<.<<<<<<<<<...>>>>.>>>>><<<<<<<<<.<<<<<........<<<<<.<<<..<<<<.<.<<<.<<<<.........>>>>.>>>.......>>>>>.>>>>>>>>.....................>>>>>>>>>>>>>><<<.<<<<.<<..<<<<<.<<<<<<<..<<<<<<<<<.<<<..<<<<<<<..>>>>>>>...>>>>>.>>>>>>>..>>>>>>>((.......<<<<<....))>>>>>...<<<<<<<<.......>>>>>>>>.>>>>><<<<<<<<<<<<<<<<<..<<<<...<<.<<<<...<<<<<..<<<<<<..<<<<.......<<<<...<<<<<<<.<<<<<<...<<<<.<<<<<<....>>>>>>..>>>>......>>>>>>>>>>>>>..>>>>.>>>>..>>>>>>.>>>>>..<<<<<....>>>>>.>>>>.>>...>>>>.<<<<<<...>>>>>>...>>>>>>>>>>>>>>>>>.>>>>>>..>>>.>>>>................ ...........((((((((((((((...)))).)))))(((((((((.(((((........(((((.(((..(((((...((.((((.........)))).))........))))).)))))))).(.(...............))))))))))))))))(((.((((.((..(((((((((((((..((..(((...(((..((((((....))))))...)))...)))..))..)))))))[[.......(((((....]])))))...(((((((.((....)))))))))))))))(((((((((((.(((((..((((...((.(((((..(((((..((((((..((((.(...).((((...((.(((..(((.((...((((.((((((....))))))..))))......)).))).))).))..)))).))))..)))))).)))))..(((((....)))))))))).))...)))).((((((...))))))...))))).))))))))))).))))))..))))))))................ S. cerevisiae spliceosomal E complex (UBC4); U1 snRNA 6n7r R 558 3.2 RF00488 URS000012D749_4932 31485080 0030627 0000395 0005685 4932 auacuuaccuuaagauaucagaggaaaguccuacugaucaaacaugcgcuuccaauaguagaaggacguuaagcauuuaucauugaacuauaauuguucauugaagucauugaugcaaacuccuuggucacacacacauacggcgcggaaggcguguuugcugacguuuccauucccuuguuucaaucauugguuaaucccuugauuccuuuggggauuuuuggguuaaacugauuuuuggggcccuuuguuucuucugccuggagaaguuugacaccaaauucaaauugguguuaggggagcuggggccuuucaaaagagagcuuuguagaggcauucuuuuugacuacuuuucucuagcgugccauuuuaguuuuugacggcagauucgaaugaacuuaaguuuaugaugaagguauggcuguugagauuauuuggucgggauuguaguuugaagaugugcucuuuugagcagucucaacuuugcucguucccguuaugggaaaaauuuuggaaggucuugguaggaacggguggaucuuauaauuuuugauuuau ...........<<<<.<<<<<<<<.....>>>.>>>>><<<<<<<<<.<<<<<........<<<<<.<<<..<<<<.<.<<<.<<<<<.......>>>>>.>>>.......>>>>>.>>>>>>>>.....................>>>>>>>>>>>>>><<<.<<<<.<<..<<<<<.<<<<<<<..<<<<<<<<<.<<<..<<<<<<<..>>>>>>>...>>>>>.>>>>>>>..>>>>>>>((.......<<<<<....))>>>>>...<<<<<<<<.<....>>>>>>>>>.>>>>><<<<<<<<<<<<<<<<<..<<<<...<<.<<<<...<<<<<..<<<<<<..<<<<.......<<<<...<<<<<<<.<<<<<<...<<<<.<<<<<<....>>>>>>..>>>>......>>>>>>>>>>>>>..>>>>.>>>>..>>>>>>.>>>>>..<<<<<....>>>>>.>>>>.>>...>>>>.<<<<<<...>>>>>>...>>>>>>>>>>>>>>>>>.>>>>>>..>>>.>>>>................ ...........((((((((((((((...)))).)))))((((((((([(((((.[......(((((.(((..(((((..(((.((((.........)))).))).......))))).)))))))).(](..............]))))))))))))))))(((.((((.((..(((((((((((((..(((((((...(((..((((((....))))))...)))...)))))))..)))))))[[.......(((((....]])))))...((((((.(.(....).)))))))))))))((((((.((((.(((((..((((...((.(((((..(((((..((((((..((.(.......((((...(((((((.(((.((...((((.((((((....))))))..))))......)).))))))))))..)))).).))..)))))).)))))..(((((....)))))))))).))...)))).((((((...))))))...))))).)))).)))))).))))))..))))))))................ Saccharomyces cerevisiae spliceosomal E complex (ACT1); U1 snRNA 6n7x R 308 3.6 RF00488 URS000012D749_559292 29051543 0030627 0000395 0005685 559292 uaagauaucagaggaaaguccucugaucaaacaugcgcuuccaauaguagaaggacguuaagcauuuaucauugaacuaguucauugaagucauugaugcaaacuccuuggucacacacggcgcggaaggcguguuugcugacguuccauucccuuguuucaaucauugguuaacugauuuuuggggcccuuuguuucuucugccuggagaaguuugacaccaaauauugguguuaggggagcuggggccuuucaaaauuuuggaaggucuugguaggaacggguggaucuuauaauuuuugauuuau <<<<<.<<<<<<<<.....>>>>>>>><<<<<<<<<.<<<<<........<<<<<.<<<..<<<<.<.<<<.<<<<<..>>>>>.>>>.......>>>>>.>>>>>>>>...............>>>>>>>>>>>>>><<<.<<<<<<..<<<<<.<<<<<<<..<<<<<<..>>>>>>..>>>>>>>((.......<<<<<....))>>>>>...<<<<<<<<...>>>>>>>>.>>>>><<<<<<<<<<<<<<<<<>>>>>>>>>>>>>>>>>.>>>>>>..>>>.>>>>>............... (((((((((((((((...)))))))))(((((((((.(((((.[......(((((.(((..(((((..(((.((((....)))).)).)......))))).)))))))).(](.........))))))))))))))))(((.((((((..(((((((((((((..((..(.().)..))..)))))))[[.......(((((....]])))))...(((((((.(())))))))))))))).(((((.((((.((((())))).)))).)))))..))))))..)))))))))............... S. cerevisiae U1 snRNP; U1 snRNA 6n9e 1x 76 3.7 RF00005 URS000041AF00_562 30520988 0030533 0006412 562 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic CC-Pmn and bound to mRNA and P-site tRNA at 3.7A resolution; P-site tRNA, Deacylated Initiator Methionyl-tRNA 6n9e 2x 76 3.7 RF00005 URS000041AF00_562 30520988 0030533 0006412 562 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic CC-Pmn and bound to mRNA and P-site tRNA at 3.7A resolution; P-site tRNA, Deacylated Initiator Methionyl-tRNA 6n9f 1x 76 3.7 RF00005 URS000041AF00_562 30520988 0030533 0006412 562 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic ACCA-DPhe and bound to mRNA and P-site tRNA at 3.7A resolution; P-site tRNA, Deacylated Initiator Methionyl-tRNA 6n9f 2x 76 3.7 RF00005 URS000041AF00_562 30520988 0030533 0006412 562 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(.(((..]....))).)))))))..... Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic ACCA-DPhe and bound to mRNA and P-site tRNA at 3.7A resolution; P-site tRNA, Deacylated Initiator Methionyl-tRNA 6nd4 2 146 4.3 RF01846 URS0000EEAD32_1247190 31206356 0006396 0005730 1247190 aggaucaggaaucgucacucuuugacucuucaaaagagccacugaauccaacuugguugaugagucccauaaccuuuguacccagugagaaaccguauggcgcgaugaucuacccauggguggguacaaauggcagucugacaagu ..................................................<<<<<.................<<<<<<<<<<..<.......<<<..>>>.........>.<<<....>>>.>>>>>>>>.>>........>>>>> ..................................................(((((......(..........((((((((((..(...(...(......)..)......).(((....))).)))))))).))....)...))))) Conformational switches control early maturation of the eukaryotic small ribosomal subunit; U3 snoRNA 6nd5 1w 74 2.6 RF00005 URS00005AA258_562 30733327 0030533 0006412 562 gcccgganagcucaggguagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<......>>>><<<<<<<.....>>>>>>.>...<<<<<.......>>>>>>>>>>>>.... (((((((..((((...[..)))).((((.........)))).....(((((..]....)))))))))))).... Crystal structure of the Thermus thermophilus 70S ribosome in complex with chloramphenicol and bound to mRNA and A-, P-, and E-site tRNAs at 2.60A resolution; A-site and E-site tRNAs 6nd5 1x 76 2.6 RF00005 URS000041AF00_562 30733327 0030533 0006412 562 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the Thermus thermophilus 70S ribosome in complex with chloramphenicol and bound to mRNA and A-, P-, and E-site tRNAs at 2.60A resolution; P-site tRNA 6nd5 1y 74 2.6 RF00005 URS00005AA258_562 30733327 0030533 0006412 562 gcccgganagcucaggguagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<......>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((...[..)))).((((.........)))).....(((((..]....)))))))))))).... Crystal structure of the Thermus thermophilus 70S ribosome in complex with chloramphenicol and bound to mRNA and A-, P-, and E-site tRNAs at 2.60A resolution; A-site and E-site tRNAs 6nd5 2w 72 2.6 RF00005 URS00005AA258_562 30733327 0030533 0006412 562 cccgganagcucagggagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<..<<<<.....>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((...[.)))).((((.........))))......((((..]....)))).))))))..... Crystal structure of the Thermus thermophilus 70S ribosome in complex with chloramphenicol and bound to mRNA and A-, P-, and E-site tRNAs at 2.60A resolution; A-site and E-site tRNAs 6nd5 2x 76 2.6 RF00005 URS000041AF00_562 30733327 0030533 0006412 562 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the Thermus thermophilus 70S ribosome in complex with chloramphenicol and bound to mRNA and A-, P-, and E-site tRNAs at 2.60A resolution; P-site tRNA 6nd5 2y 73 2.6 RF00005 URS00005AA258_562 30733327 0030533 0006412 562 gcccgganagcucagggagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<.....>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((...[.)))).((((.........)))).....(((((..]....)))))))))))).... Crystal structure of the Thermus thermophilus 70S ribosome in complex with chloramphenicol and bound to mRNA and A-, P-, and E-site tRNAs at 2.60A resolution; A-site and E-site tRNAs 6nd6 1w 73 2.85 RF00005 URS00003179F7_562 30733327 0030533 0006412 562 gggugaunagcucagggagagcaccucccunacnaggaggggnucggcggnucgaucccgucaucacccacca <<<<<<<..<<<<.....>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((....((((...[.)))).(((((.......))))).....(((((..]....)))))..))))).... Crystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolution; A-site and E-site tRNAs 6nd6 1x 76 2.85 RF00005 URS000041AF00_562 30733327 0030533 0006412 562 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolution; P-site tRNA 6nd6 1y 74 2.85 RF00005 URS00003179F7_562 30733327 0030533 0006412 562 gggugaunagcucaggggagagcaccucccunacnaggaggggnucggcggnucgaucccgucaucacccacca <<<<<<<..<<<<......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((....((((......)))).(((((.......))))).....(.(((.......))).)..))))).... Crystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolution; A-site and E-site tRNAs 6nd6 2w 73 2.85 RF00005 URS00003179F7_562 30733327 0030533 0006412 562 gggugaunagcucagggagagcaccucccunacnaggaggggnucggcggnucgaucccgucaucacccacca <<<<<<...<<<<.....>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>.>>>>>>.... (((((....((((...[.)))).(((((.......))))).....(((((..]....)))))..))))).... Crystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolution; A-site and E-site tRNAs 6nd6 2x 76 2.85 RF00005 URS000041AF00_562 30733327 0030533 0006412 562 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(.(((..]....))).)))))))..... Crystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolution; P-site tRNA 6nd6 2y 73 2.85 RF00005 URS00003179F7_562 30733327 0030533 0006412 562 gggugaunagcucagggagagcaccucccunacnaggaggggnucggcggnucgaucccgucaucacccacca <<<<<....<<<<.....>>>>.<<<<<.......>>>>>......<<<<.......>>>>...>>>>>.... (((((.(..((((...[.)))).(((((.......))))).......(((..]....)))..).))))).... Crystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolution; A-site and E-site tRNAs 6ndk QV 77 3.64 RF00005 URS000041AF00_562 30782843 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..(((.......[...))).(((((.......))))).....(((((..]....)))))))))))..... Structure of ASLSufA6 A37.5 bound to the 70S A site; P-site tRNAfMet 6ndk XV 77 3.64 RF00005 URS000041AF00_562 30782843 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<.........>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(.(.(..].....)).)))))))..... Structure of ASLSufA6 A37.5 bound to the 70S A site; P-site tRNAfMet 6nuo QV 77 3.2 RF00005 URS00001DEEBE_562 33016876 0030533 0006412 562 cggugauuggcgcagccugguagcgcacuucguucggnacgaaggggucggagguucgaauccucuaucaccgacca <<<<<<...<<<<.........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>.>>>>>>.... (((((((..((((.........)))).(.(((.......))).).....(((((.......)))))))))))).... Modified tRNA(Pro) bound to Thermus thermophilus 70S (cognate); P-site tRNA-Pro 6nuo XV 77 3.2 RF00005 URS00001DEEBE_562 33016876 0030533 0006412 562 cggugauuggcgcagccugguagcgcacuucguucggnacgaaggggucggagguucgaauccucuaucaccgacca <<<<<<<..<<<<.........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((......[..)))).(((((.......)))))......((((..]....)))).))))))).... Modified tRNA(Pro) bound to Thermus thermophilus 70S (cognate); P-site tRNA-Pro 6nwy QV 77 3.5 RF00005 URS00001DEEBE_562 33016876 0030533 0006412 562 cggugauuggcgcagccugguagcgcacuucguucggnacgaaggggucggagguucgaauccucuaucaccgacca <<<<<<<..<<<<.........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))).... Modified tRNA(Pro) bound to Thermus thermophilus 70S (near-cognate); E-site tRNA-Pro 6nwy XV 77 3.5 RF00005 URS00001DEEBE_562 33016876 0030533 0006412 562 cggugauuggcgcagccugguagcgcacuucguucggnacgaaggggucggagguucgaauccucuaucaccgacca <<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.........)))).((.(.........).))......((((.......)))).))))))).... Modified tRNA(Pro) bound to Thermus thermophilus 70S (near-cognate); E-site tRNA-Pro 6o3m QV 77 3.97 RF00005 URS00001DEEBE_562 33016876 0030533 0006412 562 cggugauuggcgcagccugguagcgcacuucguucgggacgaaggggucggagguucgaauccucuaucaccgacca <<<<<<...<<<<.........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>.>>>>>>.... (((((((..((((......[..)))).(((((.......)))))......((((..]....)))).))))))).... Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (cognate); P-site ASLPro 6o3m XV 77 3.97 RF00005 URS00001DEEBE_562 33016876 0030533 0006412 562 cggugauuggcgcagccugguagcgcacuucguucgggacgaaggggucggagguucgaauccucuaucaccgacca <<<<<<<..<<<<.........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((......[..)))).(((((.......)))))......((((..]....)))).))))))).... Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (cognate); P-site ASLPro 6o7k v 77 4.2 RF00005 URS00001BBAFC_562 31108498 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaagaucgucgguucaaauccggcccccgcaacca ..<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>...... ...((((..((((.........)))).(((((.......))))).....(((((.......)))))))))....... 30S initiation complex; tRNA 6o8w u 76 3.53 RF00005 URS00005AA258_1351 33004869 0030533 0006412 1351 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((........)))).((((.........)))).....((.((.......)).))))))))).... Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class01; tRNA 6o97 1w 73 2.75 RF00005 URS00003179F7_562 30793894 0030533 0006412 562 gggugaunagcucagggagagcaccucccunacnaggaggggnucggcggnucgaucccgucaucacccacca <<<<<<...<<<<.....>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>.>>>>>>.... (((((....((((...[.)))).(((((.......))))).....(((((..]....)))))..))))).... Crystal structure of the Thermus thermophilus 70S ribosome in complex with propylamycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.75A resolution; A-site and E-site tRNAs 6o97 1x 76 2.75 RF00005 URS000041AF00_562 30793894 0030533 0006412 562 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the Thermus thermophilus 70S ribosome in complex with propylamycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.75A resolution; P-site tRNA 6o97 1y 73 2.75 RF00005 URS00003179F7_562 30793894 0030533 0006412 562 gggugaunagcucagggagagcaccucccunacnaggaggggnucggcggnucgaucccgucaucacccacca <<<<<<<..<<<<.....>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... ((((((...((((.....)))).(((((.......))))).....(((((.......))))).)))))).... Crystal structure of the Thermus thermophilus 70S ribosome in complex with propylamycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.75A resolution; A-site and E-site tRNAs 6o97 2w 73 2.75 RF00005 URS00003179F7_562 30793894 0030533 0006412 562 gggugaunagcucagggagagcaccucccunacnaggaggggnucggcggnucgaucccgucaucacccacca <<<<<<...<<<<.....>>>>.<<<<<.......>>>>>......<<<<.......>>>>..>>>>>>.... ((((((...((((...[.)))).(((((.......))))).......(((..]....)))...)))))).... Crystal structure of the Thermus thermophilus 70S ribosome in complex with propylamycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.75A resolution; A-site and E-site tRNAs 6o97 2x 76 2.75 RF00005 URS000041AF00_562 30793894 0030533 0006412 562 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(.(((..]....))).)))))))..... Crystal structure of the Thermus thermophilus 70S ribosome in complex with propylamycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.75A resolution; P-site tRNA 6o97 2y 73 2.75 RF00005 URS00003179F7_562 30793894 0030533 0006412 562 gggugaunagcucagggagagcaccucccunacnaggaggggnucggcggnucgaucccgucaucacccacca <<<<<<<..<<<<.....>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... ((((((...((((...[.)))).(((((.......))))).....(((((..]....))))).)))))).... Crystal structure of the Thermus thermophilus 70S ribosome in complex with propylamycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.75A resolution; A-site and E-site tRNAs 6o9j v 76 3.9 RF00005 URS00005AA258_562 31108498 0030533 0006412 562 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).(((((.......))))).....(((((..]....)))))))))))).... 70S Elongation Competent Ribosome; P-tRNA 6o9k y 77 4.0 RF00005 URS00001BBAFC_562 31108498 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaagaucgucgguucaaauccggcccccgcaacca ..<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>...... ...((((..((((.........)))).(((((.......))))).....(((((.......)))))))))....... 70S initiation complex; tRNA 6od9 A 62 4.102 RF01750 URS0000868535_861 31282869 0006730,1900371 861 guuauaugacugacggaacguggaauuaaccacaugaaguauaacggccgaccgucugggcg <<<<<<<..<.(((((...<<<<......>>>>..>..>>>>>>>.<<<..)))))..>>>. (((((((..(.[[[[[...((((......))))..)..))))))).(((..]]]]]..))). Co-crystal structure of the Fusobacterium ulcerans ZTP riboswitch using an X-ray free-electron laser; RNA (75-MER) 6od9 B 62 4.102 RF01750 URS0000868535_861 31282869 0006730,1900371 861 guuauaugacugacggaacguggaauuaaccacaugaaguauaacugccgaccgucugggcg .<<<<<<..<.(((((...<<<<......>>>>..>..>>>>>>.<<<<..)))))..>>>> ..(((((..(.[[[[[...((((......))))..)..)))))...(((..]]]]]..))). Co-crystal structure of the Fusobacterium ulcerans ZTP riboswitch using an X-ray free-electron laser; RNA (75-MER) 6of1 1w 73 2.8 RF00005 URS00003179F7_562 30936109 0030533 0006412 562 gggugaunagcucagggagagcaccucccunacnaggaggggnucggcggnucgaucccgucaucacccacca <<<<<<...<<<<.....>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>.>>>>>>.... (((((....((((...[.)))).(((((.......))))).....(((((..]....)))))..))))).... Crystal structure of the Thermus thermophilus 70S ribosome in complex with dirithromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.80A resolution; A-site and E-site tRNAs 6of1 1x 76 2.8 RF00005 URS000041AF00_562 30936109 0030533 0006412 562 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the Thermus thermophilus 70S ribosome in complex with dirithromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.80A resolution; P-site tRNA 6of1 1y 73 2.8 RF00005 URS00003179F7_562 30936109 0030533 0006412 562 gggugaunagcucagggagagcaccucccunacnaggaggggnucggcggnucgaucccgucaucacccacca <<<<<<<..<<<<.....>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((....((((.....)))).(((((.......))))).....(((((.......)))))..))))).... Crystal structure of the Thermus thermophilus 70S ribosome in complex with dirithromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.80A resolution; A-site and E-site tRNAs 6of1 2w 73 2.8 RF00005 URS00003179F7_562 30936109 0030533 0006412 562 gggugaunagcucagggagagcaccucccunacnaggaggggnucggcggnucgaucccgucaucacccacca <<<<<<...<<<<.....>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>.>>>>>>.... (((((....((((...[.)))).(((((.......))))).....(.(((..]....))).)..))))).... Crystal structure of the Thermus thermophilus 70S ribosome in complex with dirithromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.80A resolution; A-site and E-site tRNAs 6of1 2x 76 2.8 RF00005 URS000041AF00_562 30936109 0030533 0006412 562 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the Thermus thermophilus 70S ribosome in complex with dirithromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.80A resolution; P-site tRNA 6of1 2y 73 2.8 RF00005 URS00003179F7_562 30936109 0030533 0006412 562 gggugaunagcucagggagagcaccucccunacnaggaggggnucggcggnucgaucccgucaucacccacca <<<<<....<<<<.....>>>>.<<<<<.......>>>>>.....<<.<<.......>>.>>..>>>>>.... (((((....((((...[.)))).(((((.......))))).....(..((..]....))..)..))))).... Crystal structure of the Thermus thermophilus 70S ribosome in complex with dirithromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.80A resolution; A-site and E-site tRNAs 6of6 QV 77 3.2 RF00005 URS000041AF00_562 32601241 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of tRNA^ Ala(GGC) bound to cognate 70S A-site; P-site tRNAfMet 6of6 QW 76 3.2 RF00005 URS0001A24B5E_562 32601241 0030533 0006412 562 ggggcuauagcucagaagggagagcgcuugcaugccaugcaagaggucagcgguucgaucccgcuuagcuccacca <<<<<<<....<<........>>...<<<<.........>>>>.....<<<<<.......>>>>>>>>>>>>.... ((.((((....(...........)..((((.........)))).....(((((.......))))))))).)).... Crystal structure of tRNA^ Ala(GGC) bound to cognate 70S A-site; E-site tRNAAla(GGC) 6of6 QY 75 3.2 RF00005 URS00001C39A4_1354003 32601241 0030533 0006412 1354003 ggggcuauagcucagcugggagagcgcuugcauggcaugcaagaggucagcgguucgaucccgcuuagcuccacc <<<<<<...<<<<........>>>>.<<<<<<.....>>>>>>......<<<.........>>>..>>>>>>... ((.((.....(............)..((((((.....))))))......((.(........)))...)).))... Crystal structure of tRNA^ Ala(GGC) bound to cognate 70S A-site; A-site tRNAAla(GGC) 6of6 XV 77 3.2 RF00005 URS000041AF00_562 32601241 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of tRNA^ Ala(GGC) bound to cognate 70S A-site; P-site tRNAfMet 6of6 XW 76 3.2 RF00005 URS0001A24B5E_562 32601241 0030533 0006412 562 ggggcuauagcucagaagggagagcgcuugcaugccaugcaagaggucagcgguucgaucccgcuuagcuccacca <<<<<....<<<<........>>>>..<.............>......<<<<<.......>>>>>..>>>>>.... (((..(...(((..........)))........................((((.......))))...).))).... Crystal structure of tRNA^ Ala(GGC) bound to cognate 70S A-site; E-site tRNAAla(GGC) 6of6 XY 75 3.2 RF00005 URS00001C39A4_1354003 32601241 0030533 0006412 1354003 ggggcuauagcucagcugggagagcgcuugcauggcaugcaagaggucagcgguucgaucccgcuuagcuccacc .<<<<<...<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<.........>>>>.>>.>>>... .((.((....(((........)))...(((((.....)))))........(...........)...))..))... Crystal structure of tRNA^ Ala(GGC) bound to cognate 70S A-site; A-site tRNAAla(GGC) 6ofx 5 77 3.3 RF00005 URS000041AF00_562 31513010 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((.........)))).(((((.......))))).....(.(((.......))).)))))))..... Non-rotated ribosome (Structure I); tRNAfMet 6og7 5 75 3.3 RF00005 URS000041AF00_562 31513010 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaac .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>... .((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))... 70S termination complex with RF2 bound to the UGA codon. Non-rotated ribosome with RF2 bound (Structure II); tRNAfMet 6ogf 5 73 3.9 RF00005 URS000041AF00_562 31513010 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>. .((((((..((((.........)))).(((((.......))))).....(.(((.......))).))))))). 70S termination complex with RF2 bound to the UGA codon. Partially rotated ribosome with RF2 bound (Structure III).; tRNAfMet 6ogg 5 73 4.2 RF00005 URS000041AF00_562 31513010 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgca .<<<<<<..<<<<.........>>>>.<.<<<.......>>>.>.....<<<<<.......>>>>>>>>>>>. .((((((..((((.........)))).(((((.......))))).....(.(((.......))).))))))). 70S termination complex with RF2 bound to the UGA codon. Rotated ribosome with RF2 bound (Structure IV).; tRNAfMet 6ogi 5 74 3.4 RF00005 URS000041AF00_562 31513010 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaa .<.<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>.>.. .((((((..((((......[..)))).(((((.......))))).....(((((..]....))))))))))).. 70S termination complex with RF2 bound to the UAG codon. Rotated ribosome conformation (Structure V); tRNAfMet 6oj2 QV 77 3.2 RF00005 URS000041AF00_562 32601241 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(.(((..]....))).)))))))..... Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site; P-site tRNAfMet 6oj2 QW 76 3.2 RF00005 URS0001A24B6F_562 32601241 0030533 0006412 562 ggggcuauagcucagaagggagagcgcuugcauggcaagcaagaggucagcgguucgaucccgcuuagcuccacca <<<<<<<..<<<<........>>>>.<<<<.........>>>>.....<<<<<.......>>>>>>>>>>>>.... ((.((((..(((..........))).(((...........))).....(((((.......))))))))).)).... Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site; E-site tRNAAla(GGC) 6oj2 QY 75 3.2 RF00005 URS00001C39A4_562 32601241 0030533 0006412 562 ggggcuauagcucagcugggagagcgcuugcauggcaugcaagaggucagcgguucgaucccgcuuagcuccacc <<<<<<...<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>.>>>>>>... ((.(((....(............)...(((((.....)))))........(((.......)))...))).))... Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site; A-site tRNAAla(GGC) 6oj2 XV 77 3.2 RF00005 URS000041AF00_562 32601241 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site; P-site tRNAfMet 6oj2 XW 76 3.2 RF00005 URS0001A24B6F_562 32601241 0030533 0006412 562 ggggcuauagcucagaagggagagcgcuugcauggcaagcaagaggucagcgguucgaucccgcuuagcuccacca <<<<<<<..<<<<........>>>>..<<...........>>......<<<<<.......>>>>>>>>>>>>.... ((.((((..(((..........))).......................(((((.......))))))))).)).... Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site; E-site tRNAAla(GGC) 6oj2 XY 76 3.2 RF00005 URS00001C39A4_562 32601241 0030533 0006412 562 ggggcuauagcucagcugggagagcgcuugcauggcaugcaagaggucagcgguucgaucccgcuuagcuccacca <<<<<<...<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>.>>>>>>.... ((.(((...((((........)))).((.(((.....))).)).....(.(((.......))).).))).)).... Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site; A-site tRNAAla(GGC) 6okk g 74 3.3 RF00005 URS000035398D_36329 24913268 0030533 0006412 36329 ggguaauuggcgcaguugguuagcgcgcgggucucauaaucccgaggucgugaguucgauccucacauuaccca .<<<.....<<...........>>..<............>......<..<<.......>>..>...>>>..... .(.(.....((...........))(.(............).)....(..((.......))..)...).)..... Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, small subunit; E-site tRNA 6ole u 76 3.1 RF00005 URS0000EEAD11_9606 31160784 0030533 0006412 9606 gcccggauagcucagucgguagagcaggggauuccguauccccguguccuugguucgauuccgaguccgggcacca ..<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>...... ...((((..((.(........).))..((((.......))))......((.((.......)).))))))....... Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AP and PE tRNAs; AP RNA 6ole v 76 3.1 RF00005 URS0000EEAD31_9606 31160784 0030533 0006412 9606 ugcccgguagccccgaagguagagcaggggauuccgaauccccguguccuugguucgauuccgaguccgggcacca ..<<<<<..<<............>>.<<<<<<.....>>>>>>......<<<.........>.>>.>>>>>..... ...((((..((....[.......)).(((((.......)))))......((((.....].)).)).))))...... Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AP and PE tRNAs; PE RNA 6olf v 76 3.9 RF00005 URS0000EEAD31_9606 31160784 0030533 0006412 9606 ugcccgguagccccgaagguagagcaggggauuccgaauccccguguccuugguucgauuccgaguccgggcacca ..<<<<<..<<............>>.<<<<<<.....>>>>>>......<.<.........>..>.>>>>>..... ...((((..(.(...[.......)).(((((.......))))).......(((.(..)].)).)..))))...... Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAs; PE tRNA 6olf u 76 3.9 RF00005 URS0000EEAD11_9606 31160784 0030533 0006412 9606 gcccggauagcucagucgguagagcaggggauuccguauccccguguccuugguucgauuccgaguccgggcacca ..<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>...... ..(.(((..((.(........).))..((((.......))))......(((((.......)))))))).)...... Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAs; AA tRNA 6olg Bv 76 3.4 RF00005 URS00005AA258_9606 31160784 0030533 0006412 9606 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>><<<<<<<.....>>>>>>.>...<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).(((((.......))))).....((.((..]....)).))))))))).... Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA); tRNA 6oli u 76 3.5 RF00005 URS0000EEAD11_9606 31160784 0030533 0006412 9606 gcccggauagcucagucgguagagcaggggauuccguauccccguguccuugguucgauuccgaguccgggcacca ..<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>...... ...((((..((............))..((((.......))))......((.((.......)).))))))....... Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC); tRNA 6oli v 76 3.5 RF00005 URS0000EEAD31_9606 31160784 0030533 0006412 9606 ugcccgguagccccgaagguagagcaggggauuccgaauccccguguccuugguucgauuccgaguccgggcacca ...<<<<..<<............>>.<<<<<<.....>>>>>>......<<<.........>.>>.>>>>...... ...((((..((....[.......)).(((((.......))))).......(((.(..)].)).)..))))...... Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC); tRNA 6olz Bv 76 3.9 RF00005 URS00005AA258_9606 31160784 0030533 0006412 9606 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).((((((.....)))))).....((.((..]....)).))))))))).... Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with PP tRNA; tRNA 6om0 u 76 3.1 RF00005 URS0000EEAD11_9606 31160784 0030533 0006412 9606 gcccggauagcucagucgguagagcaggggauuccguauccccguguccuugguucgauuccgaguccgggcacca ..<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>...... ..(((((..((.(........).))..((((.......))))......((.((.......)).)))))))...... Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with AP and PE tRNAs; tRNA 6om0 v 76 3.1 RF00005 URS0000EEAD31_9606 31160784 0030533 0006412 9606 ugcccgguagccccgaagguagagcaggggauuccgaauccccguguccuugguucgauuccgaguccgggcacca .<<<<<<..<<............>>.<<<<<<.....>>>>>>......<<<.........>.>>.>>>>>>.... .(.((((..(.....[..[.....).(((((.......)))))......((((.(].)].)).)).)))).).... Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with AP and PE tRNAs; tRNA 6om6 5 76 3.1 RF00005 URS00021ED8FA_562 33741965 0030533 0006412 562 gcgggaauagcucauuugguagagcacgaccuugccaaggucggggucgcgagnucgagucucguuucccgcucca <<<<<<<..<<<..........>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... .((((((..(((......[...))).(((((.......)))))......((((..]....)))).))))))..... Structure of trans-translation inhibitor bound to E. coli 70S ribosome with P site tRNA; tRNA(gly) 6om7 v 76 3.7 RF00005 URS0000EEAD31_9606 31160784 0030533 0006412 9606 ugcccgguagccccgaagguagagcaggggauuccgaauccccguguccuugguucgauuccgaguccgggcacca ..<<<<<..<<............>>.<<<<<<.....>>>>>>......<<<<.......>>.>>.>>>>>..... .(.((((..(.....[........).(((((.......)))))......((((.(..)].)).)).)))).).... Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like small molecule with AA and PE tRNAs; P/E site tRNA 6om7 u 76 3.7 RF00005 URS0000EEAD11_9606 31160784 0030533 0006412 9606 gcccggauagcucagucgguagagcaggggauuccguauccccguguccuugguucgauuccgaguccgggcacca ..<<<<...<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>.>>>>...... ..(.(((..((.(........).))..((((.......))))......((.((.......)).))))).)...... Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like small molecule with AA and PE tRNAs; A/A site tRNA 6ope QV 77 3.1 RF00005 URS000041AF00_562 32601241 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site; P-site tRNAfMet 6ope QY 75 3.1 RF00005 URS0001A24B3D_562 32601241 0030533 0006412 562 gggcuauagcucagcugggagagcgcuugcuuggcaagcaagaggucagcgguucgaucccgcuuagcuccacca <<<<<...<<<<........>>>>.<<<<<<.....>>>>>>......<<<.........>>>..>>>>>..... ..(((....(............)...((((.......))))........((.........))...)))....... Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site; A-site tRNAAla(GGC) U32-A38 6ope XV 77 3.1 RF00005 URS000041AF00_562 32601241 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site; P-site tRNAfMet 6ope XY 75 3.1 RF00005 URS0001A24B3D_562 32601241 0030533 0006412 562 gggcuauagcucagcugggagagcgcuugcuuggcaagcaagaggucagcgguucgaucccgcuuagcuccacca <<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>......<<<.........>>>.>>>>>>..... (.(((...((............))..((((.......))))........(...........)...))).)..... Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site; A-site tRNAAla(GGC) U32-A38 6ord QV 77 3.1 RF00005 URS000041AF00_562 32601241 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to cognate 70S A site; P-site tRNAfMet 6ord QY 76 3.1 RF00005 URS0001A24B3D_562 32601241 0030533 0006412 562 ggggcuauagcucagcugggagagcgcuugcuuggcaagcaagaggucagcgguucgaucccgcuuagcuccacca <<<<<<...<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>.>>>>>>.... ((.(((...((((........)))).(((((.......))))).....(((((.......))))).))).)).... Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to cognate 70S A site; A-site tRNAAla(GGC) U32-A38 6ord XV 77 3.1 RF00005 URS000041AF00_562 32601241 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to cognate 70S A site; P-site tRNAfMet 6ord XY 76 3.1 RF00005 URS0001A24B3D_562 32601241 0030533 0006412 562 ggggcuauagcucagcugggagagcgcuugcuuggcaagcaagaggucagcgguucgaucccgcuuagcuccacca <<<<<<...<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>.>>>>>>.... ((.((....((((........)))).(((((.......))))).....(((((.......)))))..)).)).... Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to cognate 70S A site; A-site tRNAAla(GGC) U32-A38 6ore 5 76 2.9 RF00005 URS0000EEACF3_562 31189921 0030533 0006412 562 gcggggungagcagccuggnagcucgucgggnugaaaacccgaagaucgucggnucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Release complex 70S; P-tRNA 6orl 5 76 3.5 RF00005 URS0000EEACF3_562 31189921 0030533 0006412 562 gcggggungagcagccuggnagcucgucgggnugaaaacccgaagaucgucggnucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... RF1 pre-accommodated 70S complex at 24 ms; P-tRNA 6osi QV 68 4.14 RF00005 URS00001DEEBE_300852 33016876 0030533 0006412 300852 cggugauuggcgcagccugguagcgcacuucgaaggggucggagguucgaauccucuaucaccgacca <<<<<<<..<<<<.........>>>>.<<<..>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.........)))).(((..))).....(((((.......)))))))))))).... Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (near cognate); tRNA(Pro) 6osi XV 68 4.14 RF00005 URS00001DEEBE_300852 33016876 0030533 0006412 300852 cggugauuggcgcagccugguagcgcacuucgaaggggucggagguucgaauccucuaucaccgacca <<<<<<<..<<<<.........>>>>.<<<..>>>.....<<<<<.......>>>>>>>>>>>>.... ((((.((..((((.........)))).((....))......((((.......)))).)).)))).... Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (near cognate); tRNA(Pro) 6osk 5 76 3.6 RF00005 URS0000EEACF3_562 31189921 0030533 0006412 562 gcggggungagcagccuggnagcucgucgggnugaaaacccgaagaucgucggnucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>......<<<<.......>>>>.>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... RF1 accommodated 70S complex at 60 ms; P-tRNA 6osq 5 76 3.5 RF00005 URS0000EEACF3_562 31189921 0030533 0006412 562 gcggggungagcagccuggnagcucgucgggnugaaaacccgaagaucgucggnucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... RF1 accommodated state bound Release complex 70S at long incubation time point; P-tRNA 6ost 5 76 4.2 RF00005 URS0000EEACF3_562 31189921 0030533 0006412 562 gcggggungagcagccuggnagcucgucgggnugaaaacccgaagaucgucggnucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... RF2 pre-accommodated state bound Release complex 70S at 24ms; P-tRNA 6ot3 5 76 3.9 RF00005 URS0000EEACF3_562 31189921 0030533 0006412 562 gcggggungagcagccuggnagcucgucgggnugaaaacccgaagaucgucggnucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... RF2 accommodated state bound Release complex 70S at 24 ms; P-tRNA 6otr QV 77 3.12 RF00005 URS000041AF00_562 31501867 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (AAU); tRNA-fMet 6otr QW 77 3.12 RF00005 URS000041AF00_562 31501867 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((.........)))).(((((.......))))).....(.(((.......))).)))))))..... Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (AAU); tRNA-fMet 6otr XV 77 3.12 RF00005 URS000041AF00_562 31501867 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (AAU); tRNA-fMet 6otr XW 77 3.12 RF00005 URS000041AF00_562 31501867 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca ...<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>....... ...((((..(((...........))).(((((.......))))).....(.(((.......))).)))))....... Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (AAU); tRNA-fMet 6ouo 5 76 3.7 RF00005 URS0000EEACF3_562 31189921 0030533 0006412 562 gcggggungagcagccuggnagcucgucgggnugaaaacccgaagaucgucggnucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... RF2 accommodated state bound 70S complex at long incubation time; P-tRNA 6oxa QV 77 3.25 RF00005 URS000041AF00_562 31501867 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU); P-site tRNA-fMet 6oxa QW 77 3.25 RF00005 URS000041AF00_562 31501867 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((.........)))).(((((.......))))).....(.(((.......))).)))))))..... Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU); P-site tRNA-fMet 6oxa XV 77 3.25 RF00005 URS000041AF00_562 31501867 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU); P-site tRNA-fMet 6oxa XW 77 3.25 RF00005 URS000041AF00_562 31501867 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .(.((((..(((...........))).(((((.......))))).....(.(((.......))).))))).)..... Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU); P-site tRNA-fMet 6oxi QV 77 3.495 RF00005 URS000041AF00_562 31501867 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))..... Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (UAA); P-site tRNA-fMet 6oxi XV 77 3.495 RF00005 URS000041AF00_562 31501867 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (UAA); P-site tRNA-fMet 6p2h A 69 2.803 RF00167 URS000197CF6D_32630 31598729 0009113 32630 ngguguaaucuccaaaauaugguuggggagccuccaccagugaaccguaaaaucgcugucaccacccag <<<<<...<<<<<<<.....((>>>>>>>........<<<<<<.))......>>>>>>....>>>>>.. ((((((..(((((((.....[[)))))))......).((((((.]]......))))))....))))).. Structural basis for 2'-deoxyguanosine recognition by the 2'-dG-II class of riboswitches; RNA (69-MER) 6pmo B 70 2.65703 RF00005 URS00005115FB_1462 31740854 0030533 0006412 1462 gcggaaguaguucagugguagaacaccaccaaggugggggucgcggguucgaaucccgucuuccgcucca <<<<<<<..<<<<.......>>>>.<<<<<..>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((....[..)))).(((((..))))).....(((((..]....)))))))))))).... Co-crystal structure of the Geobacillus kaustophilus glyQ T-box riboswitch discriminator domain in complex with tRNA-Gly; tRNA-Gly 6pom B 75 4.9 RF00005 URS00005115FB_1423 31740854 0030533 0006412 1423 gcggaaguaguucagugguagaacaccaccuugccaaggugggggucgcggguucgaaucccgucuuccgcucca <<<<<<<..<<<<.......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))).... Cryo-EM structure of the full-length Bacillus subtilis glyQS T-box riboswitch in complex with tRNA-Gly; tRNAGly (75-MER) 6q57 A 89 2.72 RF01831 URS000080DF21_210007 0046653 210007 ggagaguagaugauucgcguuaagugugugugaaugggaugucgucacacaacgaagcgagagcgcggugaaucauugcauccgcucca <<<<....<<<<<<<<<<<<....<<<<<<<<<.<.(((((..>>>>>>>>.>>..<<....>>>>>.>>>>>>>>>.))))).>>>>. ((((....((((((((((((......(((((((...[[[[[...))))))).....((....))))).))))))))).]]]]].)))). X-ray crystal structure of the tetrahydrofolate riboswitch aptamer bound to 5-deazatetrahydropterin; tetrahydrofolate riboswitch aptamer 6q8y n 76 3.1 RF00005 URS0000E60BDA_4932 30911188 0030533 0006412 4932 uuccucguggcccaauggucacggcgucuggcuacgaaccagaagauuccagguucaaguccuggcggggaagcca <<<<<<<..<<<..........>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..(((.....[....))).(((((.......))))).....(((((..]....)))))))))))).... Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex; P-site tRNA 6q8y m 75 3.1 RF00005 URS0000E60BA3_4932 30911188 0030533 0006412 4932 uccgauauagcguaacggcuaucacaucacgcuuucaccguggagaccgggguucgacuccccguaucggagcca <<<<<<<..<.<..........>.>.<<<<<.......>>>>>....<<<<<.......>>>>>>>>>>>>.... (((((((..(.(.....[....).).(((((.......)))))....(((((..]....)))))))))))).... Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex; E-site tRNA 6q95 7 77 3.7 RF00005 URS000041AF00_562 30765567 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucggnucaaauccggcccccgcaacca .<<<<<...<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>.>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(.(((..]....)).))))))))..... Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome; tRNA-fMet 6q95 8 76 3.7 RF00005 URS0000E60B80_562 30765567 0030533 0006412 562 gcccggauagcucagucgguagagcaggggauuuuuaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..))))(((((.........)))).)...((.((..]....)).))))))))).... Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome; tRNA-Phe 6q95 4 319 3.7 RF00023 URS000046D244_300852 30765567 0006401 300852 gggggugaaacggucucgacgggggucgccgagggcguggcugcgcgccgaggugcggguggccucguaaaaacccgcaucgcggcuuaaugaccgcgaccucgcccgguagcccugccgggggcucaccggaagcggggacacaaacccggcuagcccggggccacgcccucuaaccccgggcgaagcuugaagggggcucgcuccuggccgcccguccgcgggccaagccaggaggacacgcgaaacgcggacuacgcgcguagaggcccgccguagggaccuucggacggggguucgacuccccccaccuccacca <<<<<<<............<<<<<<<<.<<...<<<..<<<..<....<<<<...[.((....>>>>.......))]..<<<<<<........>>>>>><<<<<<<<<<.<<<...((((((.>>>..>>>>..>>>>>>.......))))))...<<<<<<<......(......>>>>>>>..............)......<<<<.....<..((..((..>.......>>>.>............))..)).......>.....>>>.>>>...>>>>>>>>>>...<<<<<.......>>>>>>>>>>>>.... (((((((............((..((((.(....((.(.......(...((((....[.[[...)))......].]]...((((((........))))))((((..((((...(...[[[[[[.)....))))....)))).......]]]]]]..(.(((((......[[.......))))).).............]]....[............(..(((..............]............)))..)...)..).........).))....)))))..))...(((((.......)))))))))))).... Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome; transfer-messenger RNA (tmRNA) 6q97 8 77 3.9 RF00005 URS0000093D11_562 30765567 0030533 0006412 562 ggcuacguagcucaguugguuagagcacaucacucauaaugauggggucacagguucgaaucccgucguagccacca <.<<<<...<<<<.........>>>>.<<.<.........>.>>.....<<.<<.......>>.>>.>>>>.>.... (.(.((.....................((.............)).....((.((.......)).)).)).).).... Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome; tRNA-Met 6q97 4 334 3.9 RF00023 URS00006A1445_562 30765567 0006401 562 ggggcugauucuggauucgacgggauuugcgaaacccaaggugcaugccgaggggcgguuggccucguaaaaagccgcgcuuuagcagcuuaauaaccugcuuagagcccucucucccuagccuccgcucuuaggacggggaucaagagaggucaaacccaaaagagaucgcguggaagcccugccugggguugaagcguuaaaacuuaaucaggcuaguuuguuaguggcguguccguccgcagcuggcaagcgaauguaaagacugacuaagcauguaguaccgaggauguaggaauuucggacgcggguucaacucccgccagcuccacca <<<<<<<...............<<<<<<............<<<......[.((..<<<.....))]........>>>..<<<<<.<<<.........>>>..>>>>>..<<<<..<<<<..<<<........>>>..>>>>......>>>>....................<<<...........(((........>>>............))).......<<<.....<<...((.((..>>.....>>>.............)).))............>>>...........>>>>>>.....<<<<<.......>>>>>>>>>>>>.... ((..((...................(.............((.(......[......((.......]........))..(((.((.(((.........)))..)).)))........((...(((........)))...))................................(............[...........)...............].......((..........................))..............................).))............)........(((((.......))))).))..)).... Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome; transfer-messenger RNA (tmRNA) 6q97 7 77 3.9 RF00005 URS000052A6C3_562 30765567 0030533 0006412 562 gcguccguagcucaguugguuagagcaccaccuugacauggugggggucggugguucgaguccacucggacgcacca ..<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>...... (.(((((..((((.........)))).(((((.......)))))......((((.......)))).))))).).... Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome; tRNA-Val 6q98 4 363 4.3 RF00023 URS000037602E_562 30765567 0006401 562 ggggcugauucuggauucgacgggauuugcgaaacccaaggugcaugccgaggggcgguuggccucguaaaaagccgcaaaaaauagucgcaaacgacgaaaacuacgcuuuagcagcuuaauaaccugcuuagagcccucucucccuagccuccgcucuuaggacggggaucaagagaggucaaacccaaaagagaucgcguggaagcccugccugggguugaagcguuaaaacuuaaucaggcuaguuuguuaguggcguguccguccgcagcuggcaagcgaauguaaagacugacuaagcauguaguaccgaggauguaggaauuucggacgcggguucaacucccgccagcuccacca <<<<<<<.............<<<<<<<<.......<<..<<<......<<<<...((((....>>>>......))))..............................<<<<<<<<<<.........>>>>.>>>>>><<<<<<.<<<...<<<..[(((((>>>...>>>.....>>>>>>..........))))).].<<<<...<<<<...((...>>>>...>>>>.............)).....<<<<<....<<...((.....>>....>>>>.>..............)).............>>>..>>......>>>>>>>>...<<<<<.......>>>>>>>>>>>>.... ...((((..............(((((((.......((..((.(......[.....((((......].......)))).......(.)....................((((((.(((.........)))..)))))).(((.(((((........[.[[[[......)))....)).)))...........]]]]..]..((......((...[....))......))...............]......(.....(.(....[[......))......)................]]............).))..))......)))))))....(((((.......)))))))))....... Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome; transfer-messenger RNA (tmRNA) 6q9a 7 76 3.7 RF00005 URS00005F0912_562 30765567 0030533 0006412 562 ggggcuauagcucagcugggagagcgccugcuuugcacgcaggaggucugcgguucgaucccgcauagcuccacca <<<........<.........>....<<<<<.......>>>>>.....<<<<<.......>>>>>...>>>..... (.(...............[.......(((((.......))))).....(((((..]....)))))...).)..... Structure of tmRNA SmpB bound past E site of E. coli 70S ribosome; P-site tRNA 6q9a 4 363 3.7 RF00023 URS000037602E_562 30765567 0006401 562 ggggcugauucuggauucgacgggauuugcgaaacccaaggugcaugccgaggggcgguuggccucguaaaaagccgcaaaaaauagucgcaaacgacgaaaacuacgcuuuagcagcuuaauaaccugcuuagagcccucucucccuagccuccgcucuuaggacggggaucaagagaggucaaacccaaaagagaucgcguggaagcccugccugggguugaagcguuaaaacuuaaucaggcuaguuuguuaguggcguguccguccgcagcuggcaagcgaauguaaagacugacuaagcauguaguaccgaggauguaggaauuucggacgcggguucaacucccgccagcuccacca <<.<<<................<.<<.<.<....<.....<<..<<<<<<<<<.(((((...>>>>>......)))))..............................<<<<.<..<.<.....>.>....>>>>>..<<<<.<<<<...<<<...((((.>>>...>>>>.....>>>>............))))....<<<....<<<...(((..>>>....>>>.............)))....<<<<..<<..<<...((.((..>>..>>..>>>>...........)).))....>>>>.....>>....>.....>>.>>.>.....<<<<<.......>>>>>.>>.>>>.... (..(....................((..................(((.(((((.[[[[[...)))))......]]]]]............................................................((((..((.(..((..........))..).))......))))...................(((......((....[[..))......)))............]].....((((..((..(....[..[[...)..))..))))...........]]..].....)))....................)).......((.((.......)).))....).).... Structure of tmRNA SmpB bound past E site of E. coli 70S ribosome; tmRNA 6qdv 2 120 3.3 RF00004 URS0000E60B75_9606 30705154 0045131 0000348 0005686 9606 aucgcuucucggccuuuuggcuaagaucaaguguaguaucuguucuuaucaguuuaauauauauuaaaagauuuuuggaacugcaucgaccugguauugcaguaccuccaggaacggugc .....................................................<<<<<<..>>>>>>...............<<<<<<.<<<<<.............>>>>>..>>>>>> .....................................................((((((()))))))...............((((((.(((((.............)))))..)))))) Human post-catalytic P complex spliceosome; U2 snRNA 6qdv 5 75 3.3 RF00020 URS0000118C49_9606 30705154 0000244,0000353 0005682,0046540 9606 guuucucuucagaucgcauaaaucuuucgccuuuuacuaaagauuuccguggagaggaacaaccaauuuuuugag <<<<<<<<<<<........<<<<<<<<...........>>>>>>>>...>>>>>>>>>>>............... (((((((((((...((...((((((((.(.......).)))))))).)))))))))))))............... Human post-catalytic P complex spliceosome; U5 snRNA 6qdv 6 97 3.3 RF00026 URS000035C796_9606 30705154 0030621 0000244,0000353 0005688,0046540 9606 gugcucgcuucggcagcacauauacuaaaauuggaacgauacagagaagauuagcauggccccugcgcaaggaugacacgcaaauucgugaagcguu <<<<<.<......>>>>>>.....................................<<...<<<.....>>>....>>................... (((((.((....))))))).....................................((..((((.....)))..).))................... Human post-catalytic P complex spliceosome; U6 snRNA 6qdw v 75 2.83 RF00005 URS00004CF48A_469008 33149120 0030533 0006412 469008 gcgggcaucguauaauggcuauuaccucagccuuccaagcugaugaugcggguucgauucccgcugcccgcucca ..<<.....<............>..<...............>.....<<<<<.......>>>>>..>>....... ................................................((((.......))))............ Cryo-EM structure of the 50S ribosomal subunit at 2.83 Angstroms with modeled GBC SecM peptide; glycine-tRNA glyT 6qnq 1K 65 3.5 RF00005 URS000041AF00_83333 31175275 0030533 0006412 83333 ggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccc <<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>> (((..((((......[..)))).(((((.......))))).....(((((..]....)))))))) 70S ribosome initiation complex (IC) with experimentally assigned potassium ions; E. coli tRNAfMet 6qnq 2K 77 3.5 RF00005 URS000041AF00_83333 31175275 0030533 0006412 83333 cgcggggnggagcagccuggnagcucgucgggnucauaacccgaagnucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... 70S ribosome initiation complex (IC) with experimentally assigned potassium ions; E. coli tRNAfMet 6qnq 3K 77 3.5 RF00005 URS000041AF00_83333 31175275 0030533 0006412 83333 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>......<<<<.......>>>>.>>>>>>..... .((..((..((((.........))))..((((.......))))......(((((.......)))))))..))..... 70S ribosome initiation complex (IC) with experimentally assigned potassium ions; E. coli tRNAfMet 6qnq 2L 77 3.5 RF00005 URS000041AF00_83333 31175275 0030533 0006412 83333 cgcggggnggagcagccugguagcucgucgggnucauaacccgaagnucgucggnucaaauccggcccccgcaacca .<<<<<...<<<<.........>>>>.<<<<<.......>>>>>......<<<<.......>>>>..>>>>>..... .(((((...((((.........)))).(((((.......))))).....(((((.......))))).)))))..... 70S ribosome initiation complex (IC) with experimentally assigned potassium ions; E. coli tRNAfMet 6qnq 3L 77 3.5 RF00005 URS000041AF00_83333 31175275 0030533 0006412 83333 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<.<...<<<<.........>>>>.<<<<<.......>>>>>.....<<<<.........>>>>.>.>>>..... .(((..(..((((.........)))).((((.........)))).....(((.(.......).))))..)))..... 70S ribosome initiation complex (IC) with experimentally assigned potassium ions; E. coli tRNAfMet 6qnr 1K 76 3.1 RF00005 URS00005AA258_83333 31175275 0030533 0006412 83333 gcccgganagcucagucgguagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<.<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>.>>>.... ((...(......(.....[..)....((((.........)))).....(((((..]....))))).)...)).... 70S ribosome elongation complex (EC) with experimentally assigned potassium ions; E. coli tRNAPhe 6qnr 2K 76 3.1 RF00005 URS00005AA258_83333 31175275 0030533 0006412 83333 gcccgganagcucagncggnagagcaggggauugaanauccccgunnccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).((((.........)))).....(((((..]....)))))))))))).... 70S ribosome elongation complex (EC) with experimentally assigned potassium ions; E. coli tRNAPhe 6qnr 3K 76 3.1 RF00005 URS00005AA258_83333 31175275 0030533 0006412 83333 gcccggauagcucagucgguagagcaggggauugaanauccccguguccuugguucgauuccgaguccgggcacca .<<<.<<...<<<........>>>..<<<<<<.....>>>>>>.......<<.........>>..>>.>>>..... ((((.((...(((........)))...(((.........)).)........((.......))...)).)))).... 70S ribosome elongation complex (EC) with experimentally assigned potassium ions; E. coli tRNAPhe 6qnr 5K 76 3.1 RF00005 URS00005AA258_83333 31175275 0030533 0006412 83333 gcccgganagcucagncggnagagcaggggauugaanauccccguguccuuggnucgauuccgaguccgggcacca <<<<<<...<<............>>..<<<<<.....>>>>>......<<<<<.......>>>>>.>>>>>>.... (((((((..(..(........)..)(.(((.........)))..)...(((((.......)))))))))))).... 70S ribosome elongation complex (EC) with experimentally assigned potassium ions; E. coli tRNAPhe 6qnr 1L 76 3.1 RF00005 URS00005AA258_83333 31175275 0030533 0006412 83333 gcccggauagcucagucgguagagcaggggauugaanauccccguguccuuggnucgauuccgaguccgggcacca .<<<<<.....<<........>>...<<<<<<.....>>>>>>.....<<<<<.......>>>>>.>>>>>..... (..........((........).)..((((.........)))).....(.(((.......))).)......).... 70S ribosome elongation complex (EC) with experimentally assigned potassium ions; E. coli tRNAPhe 6qnr 2L 76 3.1 RF00005 URS00005AA258_83333 31175275 0030533 0006412 83333 gcccgganagcucagncgguagagcaggggauugaanauccccgunnccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).((((.........)))).....(((((..]....)))))))))))).... 70S ribosome elongation complex (EC) with experimentally assigned potassium ions; E. coli tRNAPhe 6qnr 3L 76 3.1 RF00005 URS00005AA258_83333 31175275 0030533 0006412 83333 gcccggauagcucagucgguagagcaggggauugaanauccccguguccuugguucgauuccgaguccgggcacca .<<<.<...<<<..........>>>.<<<<<<.....>>>>>>.....<<<<........>.>>>.>.>>>..... .((.(......((........))...((((.........)))).....((.((.......)).))..).))..... 70S ribosome elongation complex (EC) with experimentally assigned potassium ions; E. coli tRNAPhe 6qw6 4 126 2.92 RF00015 URS0000E60BB1_9606 30975767 0017070 0000244,0000353 0005687,0046540 9606 nagcuuugcgcaguggcaguaucguagccaaugagguuuauccgaggcgcgauuugcuaauugaaaacuucccaauagccgugacgacuagucggcauuggcaauuuuugacagucucgagacugg ....................<<<<<.<<<.....<<.....>>..>>>>>>>>........................<<<<<<.<<<<..>>>>.>>>.>>>.........<<<<<<..>>>>>>. ...................(((((.(((.....((.....))..))))))))........................((((((.((((())))).))).))).........((((((())))))). Structure of the human U5.U4/U6 tri-snRNP at 2.9A resolution.; U4 snRNA 6qw6 5 104 2.92 RF00020 URS000075BAAE_9606 30975767 0000244,0000353 0005682,0046540 9606 acucugguuucucuucagaucgcauaaaucuuucgcacuaaagauuuccguggagaggaacaacucugaguccaauuuuuugaggccuugcuuuggcaaggcua <<<<.<<<<<<<<<<<<........<<<<<<<<......>>>>>>>>...>>>>>>>>>>>....>.>>>>............<<<<<<<<....>>>>>>>>. ((((.((((((((((((...((...((((((((......)))))))).)))))))))))))....).))))............((((((((....)))))))). Structure of the human U5.U4/U6 tri-snRNP at 2.9A resolution.; U5 snRNA 6qw6 6 42 2.92 RF00026 URS0000E60BBB_9606 30975767 0030621 0000244,0000353 0005688,0046540 9606 uuggaaaagauuagcauggccccugcgcaaggaugacauuuu .......................................... .......................................... Structure of the human U5.U4/U6 tri-snRNP at 2.9A resolution.; U6 snRNA 6qx9 1 164 3.28 RF00003 URS000032B6B6_9606 30975767 0030627 0000395 0005685 9606 auacuuaccuggcaggggagauaccaugaucacgaaggugguuuucccagggcgaggcuuauccauugcacuccggaugugcugaccccugcgauuuccccaaaugugggaaacucgacugcauaauuugugguagugggggacugcguucgcgcuuuccccug ...........<<<<.<<<<<.<<<<<..........>>>>>>>>>>.<<<<...<<<.<<<<<..........>>>>>.>>>...>>>>.<<<<<<<<<.......>>>>>>.>>>.>>>>...............<<<<<<..<<<....>>>..>>>>>>. ............(((.(((((..((((..........)))).))))).((((...(((.(((((..........))))).)))...))))..(.((((((.......))))))..)..)))................((((((..(((....)))..)))))). Structure of a human fully-assembled precatalytic spliceosome (pre-B complex).; U1 snRNA 6qx9 6 53 3.28 RF00026 URS000035C796_9606 30975767 0030621 0000244,0000353 0005688,0046540 9606 uuggaaaagauuagcauggccccugcgcaaggaugacuucgugaagcgauuuu ..................................................... ..................................................... Structure of a human fully-assembled precatalytic spliceosome (pre-B complex).; U6 snRNA 6qx9 5 104 3.28 RF00020 URS000075BAAE_9606 30975767 0000244,0000353 0005682,0046540 9606 acucugguuucucuucagaucgcauaaaucuuucgcacuaaagauuuccguggagaggaacaacucugaguccaauuuuuugaggccuugcuuuggcaaggcua <<<<.<<<<<<<<<<<<........<<<<<<<<......>>>>>>>>...>>>>>>>>>>>....>.>>>>............<<<<<<<<....>>>>>>>>. ((((.((((((((((((...((...((((((((......)))))))).)))))))))))))....).))))............((((((((....)))))))). Structure of a human fully-assembled precatalytic spliceosome (pre-B complex).; U5 snRNA 6qx9 2 94 3.28 RF00004 URS0000E60B66_9606 30975767 0045131 0000348 0005686 9606 cgcuucucggcuguaguaucuguucuuaucaguuuaauaucugauagauuuuuggagcaucgaccugguauugcaguaccuccaggaacggugc ...........................<<<<<.<....>.>>>>>...........<<<<<<.<<<<<.............>>>>>..>>>>>> ...........................(((((........)))))...........((((((.(((((.............)))))..)))))) Structure of a human fully-assembled precatalytic spliceosome (pre-B complex).; U2 snRNA 6qx9 4 126 3.28 RF00015 URS0000E60BB1_9606 30975767 0017070 0000244,0000353 0005687,0046540 9606 nagcuuugcgcaguggcaguaucguagccaaugagguuuauccgaggcgcgauuugcuaauugaaaacuucccaauagccgugacgacuagucggcauuggcaauuuuugacagucucgagacugg ....................<<<<<.<<<.....<<.....>>..>>>>>>>>........................<<<<<<.<<<<..>>>>.>>>.>>>.........<<<<<<..>>>>>>. ...................(((((.(((.....((.....))..))))))))........................((((((.((((())))).))).))).........((((((())))))). Structure of a human fully-assembled precatalytic spliceosome (pre-B complex).; U4 snRNA 6qzp S6 75 2.9 RF00005 URS0000326EAC_9606 29143818 0030533 0006412 9606 agcagaguggcgcagcggaagcgugcugggcccauaacccagaggucgauggaucgaaaccauccucugcuacca <<<<<<<........................................<<<<<.......>>>>>>>>>>>>.... (((((((....(.........)....(..(.......)...).....((.............))))))))).... High-resolution cryo-EM structure of the human 80S ribosome; E site tRNA (75-MER) 6r5q 3 75 3.0 RF00005 URS0000EEACF4_4932 31246176 0030533 0006412 4932 gcccggauagcucagcuguagagcaucagacuuaaaaucugaggguccaggguucaagucccuguucgggcgcca <<<<<<<..<<<<.......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((.(..((((....[..)))).(((((.......))))).....(((((..]....)))))).))))).... Structure of XBP1u-paused ribosome nascent chain complex (post-state); E-tRNA 6r5q 2 76 3.0 RF00005 URS0000EEAD1A_4932 31246176 0030533 0006412 4932 gcuuccguagugcagcggcuagcacguuaggcucauaaucuaaagguccuugguucgaaaccauccgggggcacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.......<<<.......>>>..>>>>>>>.... ((...((..((((....[...)))).((((.........)))).......(.(..]....).)..))...)).... Structure of XBP1u-paused ribosome nascent chain complex (post-state); P-tRNA 6r6g 2 75 3.7 RF00005 URS0000EEAD04_4932 31246176 0030533 0006412 4932 gcuuccguagugcagcggcagcacguuaggcucauaaucuaaagguccuugguucgaaaccauccgggggcacca <<<<<<<..<<<<.......>>>>.<<<<<.......>>>>>.......<<<.......>>>..>>>>>>>.... .(..(((..((((.......)))).((((.........))))........((.......))...)))..)..... Structure of XBP1u-paused ribosome nascent chain complex with SRP.; P-tRNA 6r6g 3 75 3.7 RF00005 URS0000EEACF4_4932 31246176 0030533 0006412 4932 gcccggauagcucagcuguagagcaucagacuuaaaaucugaggguccaggguucaagucccuguucgggcgcca <<<<<<<..<<<<.......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((.(..((((....[..)))).(((((.......))))).....(((((..]....)))))).))))).... Structure of XBP1u-paused ribosome nascent chain complex with SRP.; E-tRNA 6r6g AF 206 3.7 RF00017,RF01856 URS0000EEACEA_9615 31246176 0006617 0005786 9615 gccgggcgcgguggcgcgcgccuguagucccagcuacucgggaggcugaggcuggaggaucgcuugacuaaguucggcaucaauauggugaccucccgggagcgggggaccaccagguugccuaaggaggggugaaccggcccaggucggaaacggagcaggucaaaacucccgugcugaucaguaguuuagcgagaccccgucuc <<<<<<<<<<..(((.>>>>>>>....<<<<.)))....>>>>>>>.<<<<<.<<....<<<<<.<<<<.<..<<<<<<<<<<<.<<<<<..<<<<<<....>>>>>>..>>>>>.>>>>........<<<<<.....<<<<....<<<....>>>....>>>>...>>>>>.>>>>>>>....>>>>>.>>>>>...>>.>>>>> ((((((((((..[[[.)))))))....((((.]]..]..))))))).(((.(.((.(..(((((.(((...(..(.(((((((..(((((..((((((....))))))..)))))..)))......(.(((((.....((((....(((....)))....))))...)))))))))).)..)....))).)))))..))).).))) Structure of XBP1u-paused ribosome nascent chain complex with SRP.; 7S RNA 6r6p 2 76 3.1 RF00005 URS0000EEAD1A_4932 31246176 0030533 0006412 4932 gcuuccguagugcagcggcuagcacguuaggcucauaaucuaaagguccuugguucgaaaccauccgggggcacca <<<<<<<..<<<<........>>>>.<<<.<.......>.>>>.......<<<.......>>>..>>>>>>>.... ((..(((..((......[.....)).((.............)).......(((..]....)))..)))..)).... Structure of XBP1u-paused ribosome nascent chain complex (rotated state); A/P-tRNA 6r6p 3 75 3.1 RF00005 URS0000EEACF4_4932 31246176 0030533 0006412 4932 gcccggauagcucagcuguagagcaucagacuuaaaaucugaggguccaggguucaagucccuguucgggcgcca <<<<<<<..<<<<.......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((.(..((((....[..)))).(((((.......))))).....(((((..]....)))))).))))).... Structure of XBP1u-paused ribosome nascent chain complex (rotated state); P/E-tRNA 6r7q 2 75 3.9 RF00005 URS0000EEAD04_4932 31246176 0030533 0006412 4932 gcuuccguagugcagcggcagcacguuaggcucauaaucuaaagguccuugguucgaaaccauccgggggcacca <<<<<<<..<<<<.......>>>>.<<<<<.......>>>>>.......<<<.......>>>..>>>>>>>.... ....(((...(((.......)))..((((.........))))........((.......))...)))........ Structure of XBP1u-paused ribosome nascent chain complex with Sec61.; P-tRNA 6r7q 3 75 3.9 RF00005 URS0000EEACF4_4932 31246176 0030533 0006412 4932 gcccggauagcucagcuguagagcaucagacuuaaaaucugaggguccaggguucaagucccuguucgggcgcca <<<<<<<..<<<<.......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((.(..((((....[..)))).(((((.......))))).....(((((..]....)))))).))))).... Structure of XBP1u-paused ribosome nascent chain complex with Sec61.; E-tRNA 6r84 B 76 3.6 RF00005 URS0000EEAD03_4932 31189955 0030533 0006412 4932 gggcguguggcguagucgguagcgcgcucccuuagcaugggagaggucuccgguucgauuccggacucguccgcca <<<<<....<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>..>>>>>.... ((.((.(..(((.....[....))).(((((.......))))).....(((((..]....)))))).)).)).... Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state with Arb1); tRNA-Ala 6r87 B 76 3.4 RF00005 URS0000EEAD03_4932 31189955 0030533 0006412 4932 gggcguguggcguagucgguagcgcgcucccuuagcaugggagaggucuccgguucgauuccggacucguccgcca <<<<<....<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>..>>>>>.... ((.((.(..(((.....[....))).(((((.......))))).....(((((..]....)))))).)).)).... Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state without Arb1); tRNA-Ala 6rfl U 63 2.76 RF00005 URS000035EE7E_9606 31835032 0030533 0006412 9606 ccaugguguaaugguuagcacucuggacuuugaauccagcgauccgaguucaaaucucggugg <<<..<<<<........>>>>.<<<<<.......>>>>>....<<<<<.......>>>>>>>> (((..((((....[...)))).(((((.......)))))....(((((..]....)))))))) Structure of the complete Vaccinia DNA-dependent RNA polymerase complex; chr17.trna16-GlnTTG 6rxt C2 230 7.0 RF01846,RF01848 URS0000EEACFC_209285 31378463 0006396 0005730 209285 agcgacaauacuucagagaaucauuucuauaguaguuguccucucuuguguuuccuaaaggagccacagaucccacccggguugaugaacgagauccucggcgccagugagguccauuuacucucgcucuaccugcaaagguggcggucgcgugccucgucucgcggcuguauagagaguggcgaugaucuguaccccgcggggugggugucgauggaagucugaccggc ............................................................................<<<<......<.......<<<<<<<<<<.<<............<<<<<<...<<<<<<....>>>>>><<<<<<<<.<......>.>>>>>>>>....>>>>>>.........>>.<<<<<<..>>>>>>.>>>>>>>.>>>...>...>>>>. ............................................................................((((......(.......((((((.((((((...(.........(((((...(.((((....)))).)(.((((((.(......).)))))).)....)))))...)......))..(((((()))))).)))).))).)))...)...)))). Cryo-EM structure of the 90S pre-ribosome (Kre33-Noc4) from Chaetomium thermophilum, state A; U3 snoRNA 6rxu C2 230 3.5 RF01846,RF01848 URS0000EEACFC_209285 31378463 0006396 0005730 209285 agcgacaauacuucagagaaucauuucuauaguaguuguccucucuuguguuuccuaaaggagccacagaucccacccggguugaugaacgagauccucggcgccagugagguccauuuacucucgcucuaccugcaaagguggcggucgcgugccucgucucgcggcuguauagagaguggcgaugaucuguaccccgcggggugggugucgauggaagucugaccggc ............................................................................<<<<......<.......<<<<<<<<<<.<<............<<<<<<...<<<<<<....>>>>>><<<<<<<<.<......>.>>>>>>>>....>>>>>>.........>>.<<<<<<..>>>>>>.>>>>>>>.>>>...>...>>>>. ............................................................................((((......(.......((((((.((((((...(.........(((((...(.((((....)))).)(.((((((.(......).)))))).)....)))))...)......))..(((((()))))).)))).))).)))...)...)))). Cryo-EM structure of the 90S pre-ribosome (Kre33-Noc4) from Chaetomium thermophilum, state B1; U3 snoRNA 6rxv C2 230 4.0 RF01846,RF01848 URS0000EEACFC_759272 31378463 0006396 0005730 759272 agcgacaauacuucagagaaucauuucuauaguaguuguccucucuuguguuuccuaaaggagccacagaucccacccggguugaugaacgagauccucggcgccagugagguccauuuacucucgcucuaccugcaaagguggcggucgcgugccucgucucgcggcuguauagagaguggcgaugaucuguaccccgcggggugggugucgauggaagucugaccggc ............................................................................<<<<......<.......<<<<<<<<<<.<<............<<<<<<...<<<<<<....>>>>>><<<<<<<<.<......>.>>>>>>>>....>>>>>>.........>>.<<<<<<..>>>>>>.>>>>>>>.>>>...>...>>>>. ............................................................................((((......(.......((((((.((((((...(.........(((((...(.((((....)))).)(.((((((.(......).)))))).)....)))))...)......)).(..(((())))..))))).))).)))...)...)))). Cryo-EM structure of the 90S pre-ribosome (Kre33-Noc4) from Chaetomium thermophilum, state B2; U3 snoRNA 6rxx C2 229 7.1 RF01846,RF01848 URS0000EEAD02_209285 31378463 0006396 0005730 209285 agcgacaauacuucagagaaucauuucuauaguaguuguccucucuuguguuuccuaaaggagccacagaucccacccggguugaugaacgagauccucggcgccagugagguccuuuacucucgcucuaccugcaaagguggcggucgcgugccucgucucgcggcuguauagagaguggcgaugaucuguaccccgcggggugggugucgauggaagucugaccggc ............................................................................<<<<......<.......<<<<<<<<<<.<<...........<<<<<<...<<<<<<....>>>>>><<<<<<<<.<......>.>>>>>>>>....>>>>>>.........>>.<<<<<<..>>>>>>.>>>>>>>.>>>...>...>>>>. ............................................................................((((......(.......((((((.((((((...(........(((((...(.((((....)))).)(.((((((.(......).)))))).)....)))))...)......))..(((((()))))).)))).))).)))...)...)))). Cryo-EM structure of the 90S pre-ribosome (Kre33-Noc4) from Chaetomium thermophilum, state C, Poly-Ala; U3 snoRNA 6rxy C2 230 4.7 RF01846,RF01848 URS0000EEACFC_209285 31378463 0006396 0005730 209285 agcgacaauacuucagagaaucauuucuauaguaguuguccucucuuguguuuccuaaaggagccacagaucccacccggguugaugaacgagauccucggcgccagugagguccauuuacucucgcucuaccugcaaagguggcggucgcgugccucgucucgcggcuguauagagaguggcgaugaucuguaccccgcggggugggugucgauggaagucugaccggc ............................................................................<<<<..............<<<<<<<<<<.<<............<<<<<<...<<<<<......>>>>><<<<<<<<.<......>.>>>>>>>>....>>>>>>.........>>.<<<<<<..>>>>>>.>>>>>>>.>>>.......>>>>. ............................................................................((((......(.......((((((.((((((...(.........(((((...(.((((....)))).)(.((((((.(......).)))))).)....)))))...)......))....(((())))...)))).))).)))...)...)))). Cryo-EM structure of the 90S pre-ribosome (Kre33-Noc4) from Chaetomium thermophilum, state a; U3 snoRNA 6rxz C2 230 4.4 RF01846,RF01848 URS0000EEACFC_209285 31378463 0006396 0005730 209285 agcgacaauacuucagagaaucauuucuauaguaguuguccucucuuguguuuccuaaaggagccacagaucccacccggguugaugaacgagauccucggcgccagugagguccauuuacucucgcucuaccugcaaagguggcggucgcgugccucgucucgcggcuguauagagaguggcgaugaucuguaccccgcggggugggugucgauggaagucugaccggc ............................................................................<<<<......<.......<<<<<<<<<<.<<............<<<<<<...<<<<<......>>>>><<<<<<<<.<......>.>>>>>>>>....>>>>>>.........>>.<<<<<<..>>>>>>.>>>>>>>.>>>...>...>>>>. ............................................................................((((......(.......((((((.((((((...(.........(((((...(.((((....)))).)(.((((((.(......).)))))).)....)))))...)......))..(((((()))))).)))).))).)))...)...)))). Cryo-EM structure of the 90S pre-ribosome (Kre33-Noc4) from Chaetomium thermophilum, state b; U3 snoRNA 6sgc 23 76 2.8 RF00005 URS000197CF6C_9986 31768042 0030533 0006412 9986 gcccgcauagcucagccggnagagcaucagacunuunaucugaggnnnnagggnucangucccuguucgggcgcca <<<<<....<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>..>>>>>.... (((((.(..((((........))))..(((.........)))......(((((.......)))))).))))).... Rabbit 80S ribosome stalled on a poly(A) tail; tRNA (Lys3) 6sgc 33 76 2.8 RF00005 URS000197CF6C_9986 31768042 0030533 0006412 9986 gcccgcauagcucagccggnagagcaucagacunuunaucugaggnnnnagggnucangucccuguucgggcgcca <<<<<....<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>..>>>>>.... (((((.(..((((........))))..(((.........)))......(((((.......)))))).))))).... Rabbit 80S ribosome stalled on a poly(A) tail; tRNA (Lys3) 6snt 6 76 2.8 RF00005 URS000080E1EA_4932 32203490 0030533 0006412 4932 uuccucguggcccaauggucacggcgucuggcuicgaaccagaagauuccagguucaaguccuggcggggaagcca <<<<<<<..<<<..........>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..(((.....[....))).(((((.......))))).....(((((..]....)))))))))))).... Yeast 80S ribosome stalled on SDD1 mRNA.; tRNA 6sv4 n 76 3.3 RF00005 URS0000E60BDA_4932 32203490 0030533 0006412 4932 uuccucguggcccaauggucacggcgucuggcuacgaaccagaagauuccagguucaaguccuggcggggaagcca <<<<<<<..<<<..........>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..(((.....[....))).(((((.......))))).....(((((..]....)))))))))))).... The cryo-EM structure of SDD1-stalled collided trisome.; tRNA (P/P) 6sv4 nb 76 3.3 RF00005 URS00008FED3A_4932 32203490 0030533 0006412 4932 gcccggauagcucagucgguagagcaggggauuaggaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... .((((((..((((........))))..((((.......))))......((.((.......)).))))))))..... The cryo-EM structure of SDD1-stalled collided trisome.; tRNA (A/P) 6sv4 mb 77 3.3 RF00005 URS000041AF00_4932 32203490 0030533 0006412 4932 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... The cryo-EM structure of SDD1-stalled collided trisome.; tRNA (P/E) 6sv4 nc 76 3.3 RF00005 URS00008FED3A_4932 32203490 0030533 0006412 4932 gcccggauagcucagucgguagagcaggggauuaggaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... .((((((..((((........))))..((((.......))))......((.((.......)).))))))))..... The cryo-EM structure of SDD1-stalled collided trisome.; tRNA (A/P) 6sv4 mc 77 3.3 RF00005 URS000041AF00_4932 32203490 0030533 0006412 4932 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... The cryo-EM structure of SDD1-stalled collided trisome.; tRNA (P/E) 6sw9 4 76 4.2 RF00005 URS0000A76384_562 32029867 0030533 0006412 562 gcggggnggagcagccuggnagcucgucgggnucauaacccgaagaucgucggnucaaauccggcccccgcuacca .<<<<<..<<.<.........>.>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>...... .(((((..((((......[..)))).(((((.......))))).....(.(((..]....))).))))))...... IC2A model of cryo-EM structure of a full archaeal ribosomal translation initiation complex devoid of aIF1 in P. abyssi; initiator Met-tRNA fMet from E. coli (A1U72 variant) 6swc 4 76 3.3 RF00005 URS0000A76384_562 32029867 0030533 0006412 562 gcggggnggagcagccuggnagcucgucgggnucauaacccgaagaucgucggnucaaauccggcccccgcuacca .<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>...... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... IC2B model of cryo-EM structure of a full archaeal ribosomal translation initiation complex devoid of aIF1 in P. abyssi; initiator Met-tRNA fMet from E. coli (A1U72 variant) 6szs x 77 3.06 RF00005 URS00001DEEBE_83333 31776341 0030533 0006412 83333 cggugauuggcgcagccugguagcgcacuucguucgggacgaaggggucggagguucgaauccucuaucaccgacca <<<<<<<..<<<<.........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))).... Release factor-dependent ribosome rescue by BrfA in the Gram-positive bacterium Bacillus subtilis; P-site tRNA-Pro(CGG) 6t3k A 390 3.44 RF02001,RF01998 URS0001A24B61_182710 32503992 0000373 182710 gugugcccggcaugggugcagucuauagggugagagucccgaacugugaaggcagaaguaacaguuagccuaacgcaaggguguccguggcgacauggaaucugaaggaagcggacggcaaaccuucggucugaggaacacgaacuucauaugaggcuagguaucaauggaugaguuugcauaacaaaacaaaguccuuucugccaaaguugguacagaguaaaugaagcagauugaugaagggaaagacugcauucuuacccggggaggucuggaaacagaagucaggagaagucauaguacccuguucgcaggggaaggacggaacaaguauggcguucgcgccuaagcuugaacggccguauaccgaacgguacguacggucgugug .....<<<<<...<<<<<<<<<<<...<<<.......>>>..<<<<<...(((((((...>>>>>..<<<...<<<..<<<<.<<<<<<....>>>>>>>>>>.......>>>...>>>...<<<<<<<<<<<...........<<<<<......<<<..<<<<<<<<<<<<..<<<<........>>>>...>>>>.)))))))...>>>>>>>>..>>>...>>>>>>>>>>...>>>>>>...>>>>>>>>>>>....>>>>>....<<<<....>>>>...........<<<......<<<<......>>>>....>>>....<<<<<..<<<<....>>>>...>>>>>.<<<<<<<<<<<<<....>>>..>>>>>>>>>>... ..[<.((((({..(((((((((((...(((.......)))..(((((...[[[[[[[...)))))..(((...(((..((((.((((((....))))))))))...>}..)))...)))...(((((((((((.(.....)...(((((.....[(((..((((.(((((((..((((.]......))))...)))).]]]]]]]...))).))))..)))...))))))))))...))))))...)))))))))))...])))))(...((((....))))...).......(((.(....(((........)))...))))....(((((..((((....))))...))))).(((((((((((((....)))..))))))))))... Structure of Oceanobacillus iheyensis group II intron G-mutant (C289G/C358G/G385C) in the presence of K+, Mg2+ and 5'-exon; Group IIC Intron Ribozyme 6t3n A 394 3.22 RF02001,RF01998 URS0001A24B5B_221109 32503992 0000373 221109 guuauugugcccggcaugggugcagucuauagggugagagucccgaacugugaaggcagaaguaacaguuagccuaacgcaaggguguccguggcgacauggaaucugaaggaagcggacggcaaaccuucggucugaggaacacgaacuucauaugaggcuagguaucaauggaugaguuugcauaacaaaacaaaguccuuucugccaaaguugguacagaguaaaugaagcagauugaugaagggaaagacugcauucuuacccggggaggucuggaaacagaagucaggagaagucauaguacccuguucgcaggggaaggacggaacaaguauggcguucgcgccuaagcuugaacggccguauaccgaacgguacguacggucgugug [[[[.....<<<<<...<<<<<<<<<<<...<<<.......>>>..<<<<<...(((((((...>>>>>..<<<...<<<..<<<<.<<<<<<....>>>>>>>>>>.......>>>...>>>...<<<<<<<<<<<...........<<<<<......<<<..<<<<<<<<<<<...<<<<...]]]].>>>>....>>>.)))))))...>>>>>>>>..>>>...>>>>>>>>>>...>>>>>>...>>>>>>>>>>>....>>>>>....<<<<....>>>>...........<<<......<<<<......>>>>....>>>....<<<<<..<<<<....>>>>...>>>>>.<<<<<<<<<<<<<....>>>..>>>>>>>>>>... .{{{{.[<.((((({..(((((((((((...(((.......)))..(((((...[[[[[[[...)))))..(((...(((..((((.((((((....))))))))))...>}..)))...)))...(((((((((((.(.....)...(((((.....[((...(((.((((((((..((((.]}}}}..))))...)))).]]]]]]]...)))).)))...))...))))))))))...))))))...)))))))))))...])))))(...((((....))))...).......(((.(....(((........)))...))))....(((((..(((......)))...))))).(((((((((((((....)))..))))))))))... Structure of Oceanobacillus iheyensis group II intron G-mutant (C289G/C358G/G385C) in the presence of Na+, Mg2+ and 5'-exon; Group IIC Intron Ribozyme 6t3r A 389 3.57 RF02001,RF01998 URS0001A24B48_221109 32503992 0000373 221109 ugugcccggcaugggugcagucuauagggugagagucccgaacugugaaggcagaaguaacaguuagccuaacgcaaggguguccguggcgacauggaaucugaaggaagcggacggcaaaccuucggucugaggaacacgaacuucauaugaggcuagguaucaauggaugaguuugcauaacaaaacaaaguccuuucugccaaaguugguacagaguaaaugaagcagauugaugaagggaaagacugcauucuuacccggggaggucuggaaacagaagucaguagaagucauaguacccuguucgcaggggaaggacggaacaaguauggcguucgcgccuaagcuugaacugccguauaccgaacgguacguacgguagugug ....<<<<<...<<<<<<<<<<<...<<<.......>>>..<<<<<...(((((((...>>>>>..<<<...<<<..<<<<.<<<<<<....>>>>>>>>>>.......>>>...>>>...<<<<<<<<<<<...........<<<<<......<<<..<<<<<<<<<<<<..<<<<........>>>>...>>>>.)))))))...>>>>>>>>..>>>...>>>>>>>>>>...>>>>>>...>>>>>>>>>>>....>>>>>....<<<<....>>>>...........<<<......<<<<......>>>>....>>>....<<<<<..<<<<....>>>>...>>>>>.<<<<<<<<<<<<<....>>>..>>>>>>>>>>... .[<.((((({..(((((((((((...(((.......)))..(((((...[[[[[[[...)))))..(((...(((..((((.((((((....))))))))))...>}..)))...)))...(((((((((((.(.....)...(((((.....[(((....((((((((((..((((.]......))))...)))).]]]]]]]...))))))....)))...))))))))))...))))))...)))))))))))...])))))(...((((....))))...).......(((.(....(((........)))...))))....(((((..((((....))))...))))).(((((((((((((....)))..))))))))))... Structure of Oceanobacillus iheyensis group II intron U-mutant (C289U/C358U/G385A) in the presence of K+, Mg2+ and 5'-exon; Group IIC Intron Ribozyme 6t3s A 393 3.28 RF02001,RF01998 URS0001A24B4F_182710 32503992 0000373 182710 guuauugugcccggcaugggugcagucuauagggugagagucccgaacugugaaggcagaaguaacaguuagccuaacgcaaggguguccguggcgacauggaaucugaaggaagcggacggcaaaccuucggucugaggaacacgaacuucauaugaggcuagguaucaauggaugaguuugcauacaaaacaaaguccuuucugccaaaguugguacagaguaaaugaagcagauugaugaagggaaagacugcauucuuacccggggaggucuggaaacagaagucaguagaagucauaguacccuguucgcaggggaaggacggaacaaguauggcguucgcgccuaagcuugaacugccguauaccgaacgguacguacgguagugug [[.......<<<<<...<<<<<<<<<<<...<<<.......>>>..<<<<<...(((((((...>>>>>..<<<...<<<..<<<<.<<<<<<....>>>>>>>>>>.......>>>...>>>...<<<<<<<<<<<...........<<<<<......<<<..<<<<<<<<<<<<..<<<<....]].>>>>...>>>>.)))))))...>>>>>>>>..>>>...>>>>>>>>>>...>>>>>>...>>>>>>>>>>>....>>>>>....<<<<....>>>>...........<<<......<<<<......>>>>....>>>....<<<<<..<<<<....>>>>...>>>>>.<<<<<<<<<<<<<....>>>..>>>>>>>>>>... .{....[<.((((({..(((((((((((...(((.......)))..(((((...[[[[[[[...)))))..(((...(((..((((.((((((....))))))))))...>}..)))...)))...(((((((((((.(.....)...(((((.....[(((...((.((((((((..((((.]..}..))))...)))).]]]]]]]...)))).))...)))...))))))))))...))))))...)))))))))))...])))))(...((((....))))...).......(((.(....(((........)))...))))....(((((.((((......)))..))))))..((((((((((((....)))..))))))))).... Structure of Oceanobacillus iheyensis group II intron U-mutant (C289U/C358U/G385A) in the presence of Na+, Mg2+ and 5'-exon; Group IIC Intron Ribozyme 6t4q 6 76 2.6 RF00005 URS000080E1EA_4932 31858614 0030533 0006412 4932 uuccucguggcccaauggucacggcgucuggcuicgaaccagaagauuccagguucaaguccuggcggggaagcca <<<<<<<..<<<..........>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..(((.....[....))).(((((.......))))).....(((((..]....)))))))))))).... Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.; ICG tRNA Arg (P/P) 6t4q 7 75 2.6 RF00005 URS0000E60BA3_4932 31858614 0030533 0006412 4932 uccgauauagcguaacggcuaucacaucacgcuuucaccguggagaccgggguucgacuccccguaucggagcca <<<<<<<..<.<..........>.>.<<<<<.......>>>>>....<<<<<.......>>>>>>>>>>>>.... (((((((..(.(.....[....).).(((((.......)))))....(((((..]....)))))))))))).... Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.; tRNA (E/E) 6t7i 6 76 3.2 RF00005 URS000080E1EA_4932 31858614 0030533 0006412 4932 uuccucguggcccaauggucacggcgucuggcuicgaaccagaagauuccagguucaaguccuggcggggaagcca <<<<<<<..<<<..........>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..(((.....[....))).(((((.......))))).....(((((..]....)))))))))))).... Structure of yeast 80S ribosome stalled on the CGA-CGA inhibitory codon combination.; ICG tRNA Arg 6t7i 7 75 3.2 RF00005 URS0000E60BA3_4932 31858614 0030533 0006412 4932 uccgauauagcguaacggcuaucacaucacgcuuucaccguggagaccgggguucgacuccccguaucggagcca <<<<<<<..<.<..........>.>.<<<<<.......>>>>>....<<<<<.......>>>>>>>>>>>>.... (((((((..(.(.....[....).).(((((.......)))))....(((((..]....)))))))))))).... Structure of yeast 80S ribosome stalled on the CGA-CGA inhibitory codon combination.; tRNA (E-site) 6t7t 7 76 3.1 RF00005 URS000044A311_559292 31858614 0030533 0006412 559292 uccuuguuagcucaguugguagagcguucggcuuuuaaccgaaaugucagggguucgagcccccuaugaggagcca <<<<<<...<<<<........>>>><<<<<<.......>>>>>.>...<<<<<.......>>>>>.>>>>>>.... (((((((..((((....[...))))..((((.......))))......(((((..]....)))))))))))).... Structure of yeast 80S ribosome stalled on poly(A) tract.; tRNA 6t7t 6 76 3.1 RF00005 URS000044A311_559292 31858614 0030533 0006412 559292 uccuuguuagcucaguugguagagcguucggcuuuuaaccgaaaugucagggguucgagcccccuaugaggagcca <<<<<<<..<<<<........>>>><<<<<<.......>>>>>.>...<<<<<.......>>>>>>>>>>>>.... (((((((..((((....[...)))).(((((.......))))).....(((((..]....)))))))))))).... Structure of yeast 80S ribosome stalled on poly(A) tract.; tRNA 6t83 6b 76 4.0 RF00005 URS000044A311_4932 31858614 0030533 0006412 4932 uccuuguuagcucaguugguagagcguucggcuuuuaaccgaaaugucagggguucgagcccccuaugaggagcca <<<<<<...<<<<........>>>><<<<<<.......>>>>>.>...<<<<<.......>>>>>.>>>>>>.... (((((((..((((....[...)))).(((((.......))))).....(((((..]....)))))))))))).... Structure of yeast disome (di-ribosome) stalled on poly(A) tract.; tRNA 6t83 8 76 4.0 RF00005 URS000044A311_4932 31858614 0030533 0006412 4932 uccuuguuagcucaguugguagagcguucggcuuuuaaccgaaaugucagggguucgagcccccuaugaggagcca <<<<<<...<<<<........>>>><<<<<<.......>>>>>.>...<<<<<.......>>>>>.>>>>>>.... (((((((..((((....[...)))).(((((.......))))).....(((((..]....)))))))))))).... Structure of yeast disome (di-ribosome) stalled on poly(A) tract.; tRNA 6tb3 n 75 2.8 RF00005 URS00002CB170_559292 32299921 0030533 0006412 559292 agcgccgunncgcagnggaagcgcncagggcucaunacccugaunnncucggaucgnaaccgagcggcgcuacca <<<<<<<..<<<<.......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((....[..)))).(((((.......))))).....(((((..]....)))))))))))).... yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex; tRNA 6tbv PTR1 76 2.7 RF00005 URS0001A16A6E_83333 32094585 0030533 0006412 83333 gcauccgnagcucagcuggauagaguacucggnuicgnaccgagcgncggaggnucgaauccucccggaugcacca <<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.........)))).(((((.......)))))....(((((.......)))))))))))).... Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 2); P-site Arg-tRNA 6tc3 PTR1 76 2.7 RF00005 URS0001A16A6E_83333 32094585 0030533 0006412 83333 gcauccgnagcucagcuggauagaguacucggnuicgnaccgagcgncggaggnucgaauccucccggaugcacca <<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.........)))).(((((.......)))))....(((((.......)))))))))))).... Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1); P-site Arg-tRNA 6tna A 76 2.7 RF00005 URS000011107D_4932 357742 0030533 0006412 4932 gcggauuuancucagnngggagagcnccaganunaagaunuggagnucnugugnucgnuccacagaauucgcacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).((((.........)))).....(((((..]....)))))))))))).... CRYSTAL STRUCTURE OF YEAST PHENYLALANINE T-RNA. I.CRYSTALLOGRAPHIC REFINEMENT; TRNAPHE 6tnu n 75 3.1 RF00005 URS00002CB170_4932 32299921 0030533 0006412 4932 agcgccgunncgcaguggaagcgcncagggcucaunacccugaununcucggaucgnaaccgagcggcgcuacca <<<<<<<..<<<<.......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((....[..)))).(((((.......))))).....(((((..]....)))))))))))).... Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.; P-site tRNA 6tnu m 76 3.1 RF00005 URS000042DDAB_4932 32299921 0030533 0006412 4932 gggucguuagcucaguugguagagcaguugacuuuuaaucaauuggucgcagguucgaauccugcacgacccacca <<<<<<<..<<<<........>>>><<<<<<.......>>>>>>.....<<<<.......>>>>.>>>>>>>.... (((((((..((((........))))(.((((.......)))).).....((.(........))).))))))).... Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.; A-site tRNA 6ubu B 67 1.6 RF00167 URS000080DDA1_1423 32414072 0009113 1423 ggacauauaaucgcguggauauggcacgcaaguuucuaccgggcaccguaaauguccgacuaugucc <<<<<<<...<.<<<<<.....<<>>>>>.>........<<<<<<>>.....>>>>>>..>>>>>>> ((((((((..(.(((((.....[[))))).)[.....)]((((((]].....))))))..))))))) 1.60 A resolution structure of the guanine riboswitch bound to guanine; Guanine riboswitch aptamer domain 6uc7 B 67 1.798 RF00167 URS000080DDA1_1423 32414072 0009113 1423 ggacauauaaucgcguggauauggcacgcaaguuucuaccgggcaccguaaauguccgacuaugucc <<<<<<<...<.<<<<<.....<<>>>>>.>........<<<<<<>>.....>>>>>>..>>>>>>> ((((((((..(.(((((.....[[))))).)[.....)]((((((]].....))))))..))))))) Structure of guanine riboswitch bound to N2-acetyl guanine; guanine riboswitch 6uc8 B 67 1.898 RF00167 URS000080DDA1_1423 32414072 0009113 1423 ggacauauaaucgcguggauauggcacgcaaguuucuaccgggcaccguaaauguccgacuaugucc <<<<<<<...<.<<<<<.....<<>>>>>.>........<<<<<<>>.....>>>>>>..>>>>>>> ((((((((..(.(((((.....[[))))).)[.....)]((((((]].....))))))..))))))) Guanine riboswitch bound to 8-aminoguanine; Guanine riboswitch 6uc9 B 67 1.941 RF00167 URS000080DDA1_1423 32414072 0009113 1423 ggacauauaaucgcguggauauggcacgcaaguuucuaccgggcaccguaaauguccgacuaugucc <<<<<<<...<.<<<<<.....<<>>>>>.>........<<<<<<>>.....>>>>>>..>>>>>>> ((((((((..(.(((((.....[[))))).)[.....)]((((((]].....))))))..))))))) Guanine riboswitch bound to O6-cyclohexylmethyl guanine; Guanine riboswitch 6ucq 1x 74 3.5 RF00005 URS00005AA258_562 31873307 0030533 0006412 562 gcccgganagcucaggguagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((...[..)))).((((.........)))).....(((((..]....)))))))))))).... Crystal structure of the Thermus thermophilus 70S ribosome recycling complex; P-site and E-site tRNAs 6ucq 1y 74 3.5 RF00005 URS00005AA258_562 31873307 0030533 0006412 562 gcccgganagcucaggguagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<......>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((......)))).((((.........)))).....(((((.......)))))))))))).... Crystal structure of the Thermus thermophilus 70S ribosome recycling complex; P-site and E-site tRNAs 6ucq 2x 74 3.5 RF00005 URS00005AA258_562 31873307 0030533 0006412 562 gcccgganagcucaggguagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((...[..)))).((((.........)))).....(((((..]....)))))))))))).... Crystal structure of the Thermus thermophilus 70S ribosome recycling complex; P-site and E-site tRNAs 6ucq 2y 74 3.5 RF00005 URS00005AA258_562 31873307 0030533 0006412 562 gcccgganagcucaggguagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca .<<<<<<..<<<<......>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((...[..)))).((((.........)))).....((((...].....))))))))))..... Crystal structure of the Thermus thermophilus 70S ribosome recycling complex; P-site and E-site tRNAs 6ues A 119 3.7 RF00634 URS0000ABD039_164756 31796736 0010468,0046500 164756 ggucaugagugccagcgucaagccccggcuugcuggccggcaacccuccaaccgcgguggggugccccgggugaugaccagguugaguagccgugacggcuacgcggcaagcgcggguc <<<<......<<<<<<...<<<.(((((>>>>>>>>>.<<<.<<<<<<..{[[[[[>.>>>>>>>>)))))....>>>>..<<<<.<<<<<<.....>>>>>>.>>>>...]]]]].}. ((((....(.((((((....((.[[[[[)).)))))))((((.((((((.{{{{{)).))))))))]]]]]....))))..((((.((((((.....)))))).))))....}}}}.}. Apo SAM-IV Riboswitch; RNA (119-MER) 6uet A 119 4.1 RF00634 URS0000ABD039_164756 31796736 0010468,0046500 164756 ggucaugagugccagcgucaagccccggcuugcuggccggcaacccuccaaccgcgguggggugccccgggugaugaccagguugaguagccgugacggcuacgcggcaagcgcggguc [[[[......<<<<<<<...<<.(((((>>>>>>>>>.((((.(((((...<<<<<).)))))))))))))....]]]]..<<<<.<<<<<<<...>>>>>>>.>>>>...>>>>>... ((((....(.(((((((...((.[[[[[))))))))))(((..(((.((..{{{{))..))).)))]]]]]....))))..(..(.(((((((...))))))).)..)....}}}}... SAM-bound SAM-IV riboswitch; RNA (119-MER) 6ufg B 77 2.929 RF00005 URS000197CF6B_1773 31740853 0030533 0006412 1773 gggccuauagcucaggcgguuagagcgcuucgcugauaacgaagaggucggagguucaaguccuccuaggcccgcca <<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[...)))).(((((.......))))).....(((((..]....)))))))))))).... Co-crystal structure of M. tuberculosis ileS T-box in complex with tRNA-3'-OH; RNA (77-MER) 6ufh B 77 3.104 RF00005 URS000197CF6B_1773 31740853 0030533 0006412 1773 gggccuauagcucaggcgguuagagcgcuucgcugauaacgaagaggucggagguucaaguccuccuaggcccgccn <<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[...)))).(((((.......))))).....(((((..]....)))))))))))).... Co-crystal structure of M. tuberculosis ileS T-box in complex with tRNA-3'-2'3'cyclic phosphate; RNA (77-MER) 6ufm A 77 2.82 RF00005 URS0000122913_1772 31792448 0030533 0006412 1772 gggccuauagcucaggcgguuagagcgcuucgcugauaacgaagaggucggagguucgaguccuccuaggcccacca <<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[...)))).(((((.......))))).....(((((..]....)))))))))))).... Cocrystal Structure of the Nocardia farcinica ileS T-box riboswitch in complex with its cognate tRNA; RNA (77-MER) 6ugg A 77 1.95 RF00005 URS000009EE82_562 31848215 0030533 0006412 562 ggagcgguaguucagucgguuagaauaccugccugucacgcagggggucgcggguucgagucccguccguuccgcca <<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[...)))).(((((.......))))).....(((((..]....)))))))))))).... Structure of unmodified E. coli tRNA(Asp); tRNAasp 6ugg B 77 1.95 RF00005 URS000009EE82_562 31848215 0030533 0006412 562 ggagcgguaguucagucgguuagaauaccugccugucacgcagggggucgcggguucgagucccguccguuccgcca <<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[...)))).(((((.......))))).....(((((..]....)))))))))))).... Structure of unmodified E. coli tRNA(Asp); tRNAasp 6uo1 1w 71 2.95 RF00005 URS00005AA258_562 31672910 0030533 0006412 562 gcccgganagcucaggguagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggca <<<<<<<..<<<<......>>>><<<<<<<.....>>>>>>.>...<<<<<.......>>>>>>>>>>>>. (((((((..((((...[..)))).((((.........)))).....((.((..]....)).))))))))). Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA (containing pseudouridine at the first position of the codon) and deacylated A-, P-, and E-site tRNAs at 2.95A resolution; A-site and E-site tRNAs 6uo1 1x 76 2.95 RF00005 URS000041AF00_562 31672910 0030533 0006412 562 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA (containing pseudouridine at the first position of the codon) and deacylated A-, P-, and E-site tRNAs at 2.95A resolution; P-site tRNA 6uo1 1y 74 2.95 RF00005 URS00005AA258_562 31672910 0030533 0006412 562 gcccgganagcucaggguagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<......>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((......)))).((((.........)))).....(((((.......)))))))))))).... Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA (containing pseudouridine at the first position of the codon) and deacylated A-, P-, and E-site tRNAs at 2.95A resolution; A-site and E-site tRNAs 6uo1 2w 69 2.95 RF00005 URS00005AA258_562 31672910 0030533 0006412 562 cccgganagcucagggagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggca <<<<<<..<<<<.....>>>><<<<<<<.....>>>>>>.>...<<<<<.......>>>>>>>>>>>.. ((((((..((((...[.)))).((((.........)))).....((.((..]....)).)))))))).. Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA (containing pseudouridine at the first position of the codon) and deacylated A-, P-, and E-site tRNAs at 2.95A resolution; A-site and E-site tRNAs 6uo1 2x 76 2.95 RF00005 URS000041AF00_562 31672910 0030533 0006412 562 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA (containing pseudouridine at the first position of the codon) and deacylated A-, P-, and E-site tRNAs at 2.95A resolution; P-site tRNA 6uo1 2y 73 2.95 RF00005 URS00005AA258_562 31672910 0030533 0006412 562 gcccgganagcucagggagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<.....>>>>.<<<<<<.....>>>>>>......<<<<.......>>>>.>>>>>>>.... (((((((..((((...[.)))).((((.........))))......((((..]....)))).))))))).... Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA (containing pseudouridine at the first position of the codon) and deacylated A-, P-, and E-site tRNAs at 2.95A resolution; A-site and E-site tRNAs 6uz7 3 76 3.6 RF00005 URS0001A16A64_4932 31900355 0030533 0006412 4932 gcccggauagcucagaagguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<.<.<...<<<<........>>>>.<<<<<<.....>>>>>>.........<........>.....>.>>>.... ..((.....((.(.....[..).)).(((((.......))))).....(.(.(..].....).))....))..... K.lactis 80S ribosome with p/PE tRNA and eIF5B; RNA (76-MER) 6v39 v 77 3.04 RF00005 URS00002D670D_480119 31964740 0030533 0006412 480119 ggcuaugnagcucaguuggnuagagcaccgcacucauaaugcgggggucacaagnucaagucucgucauagccacca <<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<.<<.......>>.>>>>>>>>>.... (((((((....((.........))...(((((.......))))).....((.((.......)).))))))))).... Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA; tRNA-met 6v3a v 77 2.82 RF00005 URS00002D670D_480119 31964740 0030533 0006412 480119 ggcuaugnagcucaguuggnuagagcaccgcacucauaaugcgggggucacaagnucaagucucgucauagccacca <<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<.<<.......>>.>>>>>>>>>.... (((((((..((((.........)))).(((((.......))))).....((.((.......)).))))))))).... Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with E-site tRNA; tRNA-met 6v4x Y 25 3.2 RF00032 URS0002335991_10090 32029631 0006398 10090 cacugaaucagauaaagagcuguaa ......................... ......................... Cryo-EM structure of an active human histone pre-mRNA 3'-end processing machinery at 3.2 Angstrom resolution; modified H2a pre-mRNA 6v5b D 78 3.7 RF00254,RF00455,RF00254 URS0001A16A6B_9606 32220646 0035195 0016442 9606 gacauacuuguuccacucuagcagcacguaaauauuggcaccaauauuacugugcugcuuuagugugacagggauaca <.....<<<<<<.<<<<..<<<<<<<<<..<<<<<<<<..>>>>>>>>..>>>>>>>>>..>>>>.>>>>>>....>. ......((((((.((((..((((((((.(.((((((((..)))))))))..))))))))..)))).))))))...... Human Drosha and DGCR8 in complex with Primary MicroRNA (MP/RNA complex) - Active state; Pri-miR-16-2 (78-MER) 6v5c D 66 4.4 RF00254,RF00455,RF00254 URS0001A16A6B_9606 32220646 0035195 0016442 9606 cuuguuccacucuagcagcacguaaauauuggcaccaauauuacugugcugcuuuagugugacagg ..<<<<.<<<<..<<<<<<<<<..<<<<<<<<..>>>>>>>>..>>>>>>>>>..>>>>.>>>>.. (.((((.((((..((((((((.(.((((((((..)))))))))..))))))))..)))).)))).) Human Drosha and DGCR8 in complex with Primary MicroRNA (MP/RNA complex) - partially docked state; Pri-miR-16-2 (66-MER) 6var A 61 NA RF01047 URS00021ED8EA_10407 34155954 0019079 10407 gguucauguccuacuguucaagccuccaagcugugccuuggguggcuuuggggcauggacc <<<<<<<<<<<<.......<<<<<<<<<<<......>>>>>>.>>>>>.>>>>>>>>>>>> ((((((((((((........(((((((((((...).)))))).))))..)))))))))))) 61 nt human Hepatitis B virus epsilon pre-genomic RNA; RNA (61-MER) 6vu3 A 76 3.7 RF00005 URS000080DFF5_562 32820061 0030533 0006412 562 cgcgggguggagcagccgguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))..... Cryo-EM structure of Escherichia coli transcription-translation complex A (TTC-A) containing mRNA with a 12 nt long spacer; E-site and A-site tRNA (fMet) 6vu3 B 76 3.7 RF00005 URS000080DFF5_562 32820061 0030533 0006412 562 cgcgggguggagcagccgguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<........>>>>.<<<<.........>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((........)))).(((...........))).....(((((.......)))))))))))..... Cryo-EM structure of Escherichia coli transcription-translation complex A (TTC-A) containing mRNA with a 12 nt long spacer; E-site and A-site tRNA (fMet) 6vvj A 130 NA RF00250 URS0001A24B37_11676 32327595 0035195 0016442 11676 ngucucucuuguuagaccaggucgagcccgggagcucucuggcuagcaaggaacccacugcuuaagccucaauaaagcuugccuugagugccucaagcagugugugcccaucucgagagagaugggugcg <<<.<<.<<<<<<<<.<<<<<..<<<<......>>>>>>>>>>>>>>>>>>>>>><<<<<<<<.<<.<<<<<...........>>>>>...>>.>>>>>>>><<<<<<<<<<<<....>>>>>>>>>>>> (((.((.((((((((.(((((..((((.(..).))))))))))))))))))))))((((((((.((((((((...(...)...))))).).)).))))))))((((((((((((....)))))))))))) Cap1G-TPUA; RNA (130-MER) 6vwl 5 76 3.1 RF00005 URS0001A24B56_562 32427100 0030533 0006412 562 gcccggauagcucagucgguagagcaggggauugaaaauccccguggucuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((........)))).(((((.......))))).....((.((.......)).))))))))).... 70S ribosome bound to HIV frameshifting stem-loop (FSS) and P/E tRNA (rotated conformation); tRNAPhe 6vwl 4 43 3.1 RF00480 URS0002335978_11676 32427100 0075523 11676 auguucgagaagaucuggccuucccacaagggaaggccaggga .............<<<<<<<<<<<<....>>>>>>>>>>>>.. .............((((((((((((....)))))))))))).. 70S ribosome bound to HIV frameshifting stem-loop (FSS) and P/E tRNA (rotated conformation); HIV frameshift stimulating sequence mRNA 6vwm 5 76 3.4 RF00005 URS0001A24B56_562 32427100 0030533 0006412 562 gcccggauagcucagucgguagagcaggggauugaaaauccccguggucuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... ...((((..((((.....[..)))).(((((.......))))).....((.((..]....)).))))))....... 70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure I); tRNAPhe 6vwm 4 43 3.4 RF00480 URS0002335978_11676 32427100 0075523 11676 auguucgagaagaucuggccuucccacaagggaaggccaggga .............<<<<<<<<<<<<....>>>>>>>>>>>>.. .............((((((((((((....)))))))))))).. 70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure I); HIV frameshift stimulating sequence mRNA 6vwn 5 76 3.4 RF00005 URS00005AA258_562 32427100 0030533 0006412 562 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... ...((((..((((.....[..)))).(((((.......))))).....((.((..]....)).))))))....... 70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II); tRNAPhe 6vwn 4 43 3.4 RF00480 URS0002335978_11676 32427100 0075523 11676 auguucgagaagaucuggccuucccacaagggaaggccaggga .............<<<<<<<<<<<<....>>>>>>>>>>>>.. .............((((((((((((....)))))))))))).. 70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II); HIV1 frameshift stimulating sequence mRNA 6vwt A 71 3.03 RF00167 URS000080E2A9_672 33741910 0009113 672 gggaagauauaauccuaaugauaugguuugggaguuucuaccaagagccuuaaacucuugauuaucuuccc <<<<<<<<<...<<<<<<......<<.>>>>>>........<<<<<<>>.....>>>>>>..>>>>>>>>> ((((((((((..((((((......[[.))))))[.....)]((((((]].....))))))..))))))))) Transitional unit cell 1 of adenine riboswitch aptamer crystal phase transition upon ligand binding; adenine riboswitch aptamer variant 6vwt B 71 3.03 RF00167 URS000080E2A9_672 33741910 0009113 672 gggaagauauaauccuaaugauaugguuugggaguuucuaccaagagccuuaaacucuugauuaucuuccc <<<<<<<<<...<<<<<<......<<.>>>>>>........<<<<<<>>.....>>>>>>..>>>>>>>>> ((((((((((..((((((......[[.))))))[.....)]((((((]].....))))))..))))))))) Transitional unit cell 1 of adenine riboswitch aptamer crystal phase transition upon ligand binding; adenine riboswitch aptamer variant 6vwv A 71 3.0 RF00167 URS000080E2A9_672 33741910 0009113 672 gggaagauauaauccuaaugauaugguuugggaguuucuaccaagagccuuaaacucuugauuaucuuccc .<<<<<<<<...<<<<<<......<<.>>>>>>........<<<<<<>>.....>>>>>>..>>>>>>>>. ((((((((((..((((((......[[.))))))[.....)]((((((]].....))))))..))))))))) Transitional unit cell 2 of adenine riboswitch aptamer crystal phase transition upon ligand binding; adenine riboswitch aptamer variant 6vwv B 71 3.0 RF00167 URS000080E2A9_672 33741910 0009113 672 gggaagauauaauccuaaugauaugguuugggaguuucuaccaagagccuuaaacucuugauuaucuuccc .<<<<<<<<...<<<<<<......<<.>>>>>>........<<<<<<>>.....>>>>>>..>>>>>>>>. ((((((((((..((((((......[[.))))))[.....)]((((((]].....))))))..))))))))) Transitional unit cell 2 of adenine riboswitch aptamer crystal phase transition upon ligand binding; adenine riboswitch aptamer variant 6vyq A 76 3.7 RF00005 URS000080DFF5_562 32820061 0030533 0006412 562 cgcgggguggagcagccgguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))..... Escherichia coli transcription-translation complex A1 (TTC-A1) containing an 15 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site; E-site and P-site tRNA (fMet) 6vyq B 76 3.7 RF00005 URS000080DFF5_562 32820061 0030533 0006412 562 cgcgggguggagcagccgguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<........>>>>.<<<<.........>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((........)))).(((...........))).....(((((.......)))))))))))..... Escherichia coli transcription-translation complex A1 (TTC-A1) containing an 15 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site; E-site and P-site tRNA (fMet) 6vyr A 76 3.8 RF00005 URS000080DFF5_562 32820061 0030533 0006412 562 cgcgggguggagcagccgguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))..... Escherichia coli transcription-translation complex A1 (TTC-A1) containing an 18 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site; E-site and P-site tRNA (fMet) 6vyr B 76 3.8 RF00005 URS000080DFF5_562 32820061 0030533 0006412 562 cgcgggguggagcagccgguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<........>>>>.<<<<.........>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((........)))).(((...........))).....(((((.......)))))))))))..... Escherichia coli transcription-translation complex A1 (TTC-A1) containing an 18 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site; E-site and P-site tRNA (fMet) 6vys A 76 3.7 RF00005 URS000080DFF5_562 32820061 0030533 0006412 562 cgcgggguggagcagccgguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))..... Escherichia coli transcription-translation complex A1 (TTC-A1) containing a 21 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site; E-site and P-site tRNA (fMet) 6vys B 76 3.7 RF00005 URS000080DFF5_562 32820061 0030533 0006412 562 cgcgggguggagcagccgguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<........>>>>.<<<<.........>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((........)))).(((...........))).....(((((.......)))))))))))..... Escherichia coli transcription-translation complex A1 (TTC-A1) containing a 21 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site; E-site and P-site tRNA (fMet) 6vyt A 76 14.0 RF00005 URS000080DFF5_562 32820061 0030533 0006412 562 cgcgggguggagcagccgguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))..... Escherichia coli transcription-translation complex A2 (TTC-A2) containing a 15 nt long mRNA spacer, NusG, and fMet-tRNAs at P-site and E-site; E-site and P-site tRNA (fMet) 6vyt B 76 14.0 RF00005 URS000080DFF5_562 32820061 0030533 0006412 562 cgcgggguggagcagccgguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<........>>>>.<<<<.........>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((........)))).(((...........))).....(((((.......)))))))))))..... Escherichia coli transcription-translation complex A2 (TTC-A2) containing a 15 nt long mRNA spacer, NusG, and fMet-tRNAs at P-site and E-site; E-site and P-site tRNA (fMet) 6vyu A 76 7.0 RF00005 URS000080DFF5_562 32820061 0030533 0006412 562 cgcgggguggagcagccgguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))..... Escherichia coli transcription-translation complex C2 (TTC-C2) containing a 27 nt long mRNA spacer; E-site fMet-tRNA 6vyu B 76 7.0 RF00005 URS000080DFF5_562 32820061 0030533 0006412 562 cgcgggguggagcagccgguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<........>>>>.<<<<.........>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((........)))).(((...........))).....(((((.......)))))))))))..... Escherichia coli transcription-translation complex C2 (TTC-C2) containing a 27 nt long mRNA spacer; E-site fMet-tRNA 6vyw A 76 7.0 RF00005 URS000080DFF5_562 32820061 0030533 0006412 562 cgcgggguggagcagccgguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))..... Escherichia coli transcription-translation complex C3 (TTC-C3) containing mRNA with a 27 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site; E-site and P-site tRNA (fMet) 6vyw B 76 7.0 RF00005 URS000080DFF5_562 32820061 0030533 0006412 562 cgcgggguggagcagccgguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<........>>>>.<<<<.........>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((........)))).(((...........))).....(((((.......)))))))))))..... Escherichia coli transcription-translation complex C3 (TTC-C3) containing mRNA with a 27 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site; E-site and P-site tRNA (fMet) 6vyx A 76 9.9 RF00005 URS000080DFF5_562 32820061 0030533 0006412 562 cgcgggguggagcagccgguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))..... Escherichia coli transcription-translation complex C4 (TTC-C4) containing mRNA with a 21 nt long spacer, transcription factor NusG, and fMet-tRNAs at P-site and E-site; E-site and P-site tRNA (fMet) 6vyx B 76 9.9 RF00005 URS000080DFF5_562 32820061 0030533 0006412 562 cgcgggguggagcagccgguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<........>>>>.<<<<.........>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((........)))).(((...........))).....(((((.......)))))))))))..... Escherichia coli transcription-translation complex C4 (TTC-C4) containing mRNA with a 21 nt long spacer, transcription factor NusG, and fMet-tRNAs at P-site and E-site; E-site and P-site tRNA (fMet) 6vyy A 76 9.9 RF00005 URS000080DFF5_562 32820061 0030533 0006412 562 cgcgggguggagcagccgguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))..... Escherichia coli transcription-translation complex C5 (TTC-C5) containing mRNA with a 21 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site; E-site and P-site tRNA (fMet) 6vyy B 76 9.9 RF00005 URS000080DFF5_562 32820061 0030533 0006412 562 cgcgggguggagcagccgguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<........>>>>.<<<<.........>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((........)))).(((...........))).....(((((.......)))))))))))..... Escherichia coli transcription-translation complex C5 (TTC-C5) containing mRNA with a 21 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site; E-site and P-site tRNA (fMet) 6vyz A 76 9.9 RF00005 URS000080DFF5_562 32820061 0030533 0006412 562 cgcgggguggagcagccgguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))..... Escherichia coli transcription-translation complex C6 (TTC-C6) containing mRNA with a 21 nt long spacer, NusA, and fMet-tRNAs at E-site and P-site; E-site and P-site tRNA (fMet) 6vyz B 76 9.9 RF00005 URS000080DFF5_562 32820061 0030533 0006412 562 cgcgggguggagcagccgguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<........>>>>.<<<<.........>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((........)))).(((...........))).....(((((.......)))))))))))..... Escherichia coli transcription-translation complex C6 (TTC-C6) containing mRNA with a 21 nt long spacer, NusA, and fMet-tRNAs at E-site and P-site; E-site and P-site tRNA (fMet) 6vz2 A 76 10.0 RF00005 URS000080DFF5_562 32820061 0030533 0006412 562 cgcgggguggagcagccgguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))..... Escherichia coli transcription-translation complex D1 (TTC-D1) containing mRNA with a 27 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site; E-site and P-site tRNA (fMet) 6vz2 B 76 10.0 RF00005 URS000080DFF5_562 32820061 0030533 0006412 562 cgcgggguggagcagccgguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<........>>>>.<<<<.........>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((........)))).(((...........))).....(((((.......)))))))))))..... Escherichia coli transcription-translation complex D1 (TTC-D1) containing mRNA with a 27 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site; E-site and P-site tRNA (fMet) 6vz3 A 76 8.9 RF00005 URS000080DFF5_562 32820061 0030533 0006412 562 cgcgggguggagcagccgguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))..... Escherichia coli transcription-translation complex D2 (TTC-D2) containing mRNA with a 27 nt long spacer; E-site tRNA (fMet) 6vz3 B 76 8.9 RF00005 URS000080DFF5_562 32820061 0030533 0006412 562 cgcgggguggagcagccgguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<........>>>>.<<<<.........>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((........)))).(((...........))).....(((((.......)))))))))))..... Escherichia coli transcription-translation complex D2 (TTC-D2) containing mRNA with a 27 nt long spacer; E-site tRNA (fMet) 6vz5 A 76 8.9 RF00005 URS000080DFF5_562 32820061 0030533 0006412 562 cgcgggguggagcagccgguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))..... Escherichia coli transcription-translation complex D3 (TTC-D3) containing mRNA with a 21 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site; E-site and P-site tRNA (fMet) 6vz5 B 76 8.9 RF00005 URS000080DFF5_562 32820061 0030533 0006412 562 cgcgggguggagcagccgguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<........>>>>.<<<<.........>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((........)))).(((...........))).....(((((.......)))))))))))..... Escherichia coli transcription-translation complex D3 (TTC-D3) containing mRNA with a 21 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site; E-site and P-site tRNA (fMet) 6vz7 A 76 7.0 RF00005 URS000080DFF5_562 32820061 0030533 0006412 562 cgcgggguggagcagccgguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))..... Escherichia coli transcription-translation complex C1 (TTC-C1) containing a 27 nt long mRNA spacer, NusG, and fMet-tRNAs at P-site and E-site; E-site and P-site tRNA (fMet) 6vz7 B 76 7.0 RF00005 URS000080DFF5_562 32820061 0030533 0006412 562 cgcgggguggagcagccgguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<........>>>>.<<<<.........>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((........)))).(((...........))).....(((((.......)))))))))))..... Escherichia coli transcription-translation complex C1 (TTC-C1) containing a 27 nt long mRNA spacer, NusG, and fMet-tRNAs at P-site and E-site; E-site and P-site tRNA (fMet) 6vzj A 76 4.1 RF00005 URS000080DFF5_562 32820061 0030533 0006412 562 cgcgggguggagcagccgguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))..... Escherichia coli transcription-translation complex A1 (TTC-A1) containing mRNA with a 15 nt long spacer, fMet-tRNAs at E-site and P-site, and lacking transcription factor NusG; E-site and P-site tRNA (fMet) 6vzj B 76 4.1 RF00005 URS000080DFF5_562 32820061 0030533 0006412 562 cgcgggguggagcagccgguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<........>>>>.<<<<.........>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((........)))).(((...........))).....(((((.......)))))))))))..... Escherichia coli transcription-translation complex A1 (TTC-A1) containing mRNA with a 15 nt long spacer, fMet-tRNAs at E-site and P-site, and lacking transcription factor NusG; E-site and P-site tRNA (fMet) 6w6l u 75 3.84 RF00005 URS0000EEAD11_9606 32820719 0030533 0006412 9606 cccggauagcucagucgguagagcaggggauuccguauccccguguccuugguucgauuccgaguccgggcacca <<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>..... .(((((..((.(........).))..((((.......))))......((.((.......)).)))))))...... Cryo-EM structure of the human ribosome-TMCO1 translocon; tRNA 6w6l v 76 3.84 RF00005 URS0000EEAD31_9606 32820719 0030533 0006412 9606 ugcccgguagccccgaagguagagcaggggauuccgaauccccguguccuugguucgauuccgaguccgggcacca ...<<<<..<<............>>.<<<<<<.....>>>>>>......<<<.........>.>>.>>>>...... ...((((..((.(..[.....).)).(((((.......)))))......((((.(..)].)).)).))))...... Cryo-EM structure of the human ribosome-TMCO1 translocon; tRNA 6w6v A 294 3.0 RF00030 URS000006F31F_559292 32651392 3.1.-.- 0000171 0006364 0000172 559292 auccaugaccaaagaaucgucacaaaucgaagcuuacaaaauggaguaaaauuuuacucaguaauaugcuuuggguugaaagucucccaccaauucguaugcggaaaacguaaugagauuuaaaaauaaaucaacucauuaaggaggaugccgguauucugcuucuugaccugguaccucuaggguacugguguucgguacuggauuccgauggaaucuaaaccauaguuaugacgauugcucuuuccuggaucgaguaacccaauggagcuuacuauucuugguccauggauu <<<<<<<<<<<<<.<<<<<<<......<<<<<<..........<<<<<<<..>>>>>>>........>>>>>>{......[[.((((.<<<.........<<<.....>>><<<<<<.................>>>>>>.<<.<<<<<<<<>>>>>>>>.>>.......<<<<<<<<.<<>>>>>>>>>>.....>>>...<<<<<<<...>>>>>>>.............>>>>>>><<<<..<<<.>>>..>>>>...}....))))]]...>....>>>>>>.>>>>>>. (((((((((((((((((((((......((((((..........(((((((())))))))........)))))).{.....[[.[[[[.(((.........(((.....)))((((((.................))))))(((.(((((.(()).))))).))).....(((((((((.(()))))))))).)...)))..((((((((...))))))))............)))))))((((..(((.)))..))))..}.....]]]]]]..))....)))))).)))))). Structure of yeast RNase MRP holoenzyme; RNA component of RNase MRP NME1 6waz D 31 4.1 RF00005 URS0000D56C47_9606 32512005 0030533 0006412 9606 gcccggguucaagucccuguucgggcgccac <<<..>>>....................... .((()))........................ +1 extended HIV-1 reverse transcriptase initiation complex core (pre-translocation state); tRNA lysine 3 6wb0 D 42 4.2 RF00005 URS0001A24B43_9606 32512005 0030533 0006412 9606 gcccggauguccaggguucaagucccuguucgggcgccactg <<<<<<<<>>>>.>>>>......................... (((((((()))).))))......................... +3 extended HIV-1 reverse transcriptase initiation complex core (pre-translocation state); tRNA lysine 3 6wb1 D 42 4.7 RF00005 URS0001A24B43_9606 32512005 0030533 0006412 9606 gcccggauguccaggguucaagucccuguucgggcgccactg <<<<<<<..>>>.>>>>......................... (((((((..))).))))......................... +3 extended HIV-1 reverse transcriptase initiation complex core (intermediate state); tRNA lysine 3 6wb2 D 42 4.5 RF00005 URS0001A24B43_9606 32512005 0030533 0006412 9606 gcccggauguccaggguucaagucccuguucgggcgccactg <<<<<<<<>>>>.>>>>......................... (((((((()))).))))......................... +3 extended HIV-1 reverse transcriptase initiation complex core (displaced state); tRNA lysine 3 6wd0 5 77 3.0 RF00005 URS000041AF00_562 32612237 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))..... Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure I-A); tRNAfMet 6wd0 6 77 3.0 RF00005 URS000041AF00_562 32612237 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((.(.........).)).(((((.......))))).....(((((.......)))))))))))..... Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure I-A); tRNAfMet 6wd1 5 77 3.3 RF00005 URS000041AF00_562 32612237 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca ....<.<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<.........>>>>.>>........ ..((((...(((...........))).(((((.......))))).....(.((.........)).).))))...... Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure I-B); tRNAfMet 6wd2 5 77 3.6 RF00005 URS000041AF00_562 32612237 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))..... Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure II-A); tRNAfMet 6wd2 6 77 3.6 RF00005 URS000041AF00_562 32612237 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((.........)))).(((((.......))))).....(.(((.......))).)))))))..... Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure II-A); tRNAfMet 6wd2 7 76 3.6 RF00005 URS00005AA258_562 32612237 0030533 0006412 562 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..))))((((((.......))))).)...(((((..]....)))))))))))).... Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure II-A); tRNAPhe 6wd3 5 77 3.6 RF00005 URS000041AF00_562 32612237 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure II-B1); tRNAfMet 6wd3 6 77 3.6 RF00005 URS000041AF00_562 32612237 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure II-B1); tRNAfMet 6wd3 7 76 3.6 RF00005 URS00005AA258_562 32612237 0030533 0006412 562 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((........))))((((((.......))))).)...(((((.......)))))))))))).... Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure II-B1); tRNAPhe 6wd4 5 77 3.7 RF00005 URS000041AF00_562 32612237 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))..... Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure II-B2); tRNAfMet 6wd4 6 77 3.7 RF00005 URS000041AF00_562 32612237 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(.(((..]....))).)))))))..... Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure II-B2); tRNAfMet 6wd4 7 76 3.7 RF00005 URS00005AA258_562 32612237 0030533 0006412 562 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..))))(((((((.....)))))).)...(((((..]....)))))))))))).... Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure II-B2); tRNAPhe 6wd5 5 77 3.6 RF00005 URS000041AF00_562 32612237 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure II-C1); tRNAfMet 6wd5 6 77 3.6 RF00005 URS000041AF00_562 32612237 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((.(......[..).)).(((((.......))))).....(.(((..]....))).)))))))..... Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure II-C1); tRNAfMet 6wd5 7 76 3.6 RF00005 URS00005AA258_562 32612237 0030533 0006412 562 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..))))((((((.......))))).)...(((((..]....)))))))))))).... Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure II-C1); tRNAPhe 6wd6 5 77 3.7 RF00005 URS000041AF00_83333 32612237 0030533 0006412 83333 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure II-C2); tRNAfMet 6wd6 6 77 3.7 RF00005 URS000041AF00_83333 32612237 0030533 0006412 83333 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure II-C2); tRNAfMet 6wd6 7 76 3.7 RF00005 URS00005AA258_83333 32612237 0030533 0006412 83333 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))).... Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure II-C2); tRNAPhe 6wd7 5 77 3.9 RF00005 URS000041AF00_562 32612237 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))..... Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure II-D); tRNAfMet 6wd7 6 77 3.9 RF00005 URS000041AF00_562 32612237 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((.(.........).)).(((((.......))))).....(((((.......)))))))))))..... Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure II-D); tRNAfMet 6wd7 7 75 3.9 RF00005 URS00005AA258_562 32612237 0030533 0006412 562 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacc <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>... (((((((..((((........)))).(((((.......))))).....(((((.......))))))))))))... Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure II-D); tRNAPhe 6wd8 5 77 3.7 RF00005 URS000041AF00_562 32612237 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))..... Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure III-A); tRNAfMet 6wd8 6 77 3.7 RF00005 URS000041AF00_562 32612237 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))..... Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure III-A); tRNAfMet 6wd8 7 76 3.7 RF00005 URS00005AA258_562 32612237 0030533 0006412 562 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((........))))((((((.......))))).)...((.((.......)).))))))))).... Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure III-A); tRNAPhe 6wd9 5 77 3.7 RF00005 URS000041AF00_562 32612237 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))..... Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure III-B); tRNAfMet 6wd9 6 77 3.7 RF00005 URS000041AF00_562 32612237 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure III-B); tRNAfMet 6wd9 7 76 3.7 RF00005 URS00005AA258_562 32612237 0030533 0006412 562 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).(((((.......))))).....(((((..]....)))))))))))).... Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure III-B); tRNAPhe 6wda 5 77 3.8 RF00005 URS000041AF00_562 32612237 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))..... Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure III-C); tRNAfMet 6wda 6 77 3.8 RF00005 URS000041AF00_562 32612237 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<.<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>.>>..... .((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))..... Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure III-C); tRNAfMet 6wda 7 76 3.8 RF00005 URS00005AA258_562 32612237 0030533 0006412 562 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..))))((((((.......))))).)...(((((..]....)))))))))))).... Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure III-C); tRNAPhe 6wdb 5 77 4.0 RF00005 URS000041AF00_562 32612237 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>.>....<<<<<.......>>>>>>>>>>>..... .((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))..... Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure IV-A); tRNAfMet 6wdb 6 77 4.0 RF00005 URS000041AF00_562 32612237 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure IV-A); tRNAfMet 6wdb 7 73 4.0 RF00005 URS00005AA258_562 32612237 0030533 0006412 562 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>. (((((((..((((.....[..)))).(((((.......))))).....(((((..]....)))))))))))). Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure IV-A); tRNAPhe 6wdc 5 77 4.2 RF00005 URS000041AF00_562 32612237 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>.>....<<<<<.......>>>>>>>>>>>..... .((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))..... Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure IV-B); tRNAfMet 6wdc 6 77 4.2 RF00005 URS000041AF00_562 32612237 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure IV-B); tRNAfMet 6wdc 7 73 4.2 RF00005 URS00005AA258_562 32612237 0030533 0006412 562 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggca <<<<<<<..<<.<........>.>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>. (((((((..((((.....[..)))).(((((.......))))).....(((((..]....)))))))))))). Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure IV-B); tRNAPhe 6wdd 5 77 3.2 RF00005 URS000041AF00_562 32612237 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))..... Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure V-A); tRNAfMet 6wdd 6 77 3.2 RF00005 URS000041AF00_562 32612237 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure V-A); tRNAfMet 6wdd 7 76 3.2 RF00005 URS00005AA258_562 32612237 0030533 0006412 562 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).(((((.......))))).....(((((..]....)))))))))))).... Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure V-A); tRNAPhe 6wde 5 77 3.0 RF00005 URS000041AF00_562 32612237 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))..... Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure V-B); tRNAfMet 6wde 6 77 3.0 RF00005 URS000041AF00_562 32612237 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))..... Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure V-B); tRNAfMet 6wde 7 76 3.0 RF00005 URS0000099A18_562 32612237 0030533 0006412 562 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..))))((((((.......))))).)...(((((..]....)))))))))))).... Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure V-B); tRNAPhe 6wdf 5 77 3.3 RF00005 URS000041AF00_83333 32612237 0030533 0006412 83333 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<...<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>.>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure VI-A); tRNAfMet 6wdf 7 76 3.3 RF00005 URS00005AA258_83333 32612237 0030533 0006412 83333 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca .<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((........)))).(((((.......))))).....((.((.......)).))))))))..... Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure VI-A); tRNAPhe 6wdg 5 77 3.3 RF00005 URS000041AF00_83333 32612237 0030533 0006412 83333 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<.<<<...<<<<.........>>>>.<<<<<.......>>>>.>.....<<<.........>>>..>>>.>..... .(.((((..((((.........)))).(((((.......))))).....(.((.........)).))))).)..... Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure VI-B); tRNAfMet 6wdg 7 76 3.3 RF00005 URS00005AA258_83333 32612237 0030533 0006412 83333 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca .<<<<<<..<<<<........>>>><<<<<<<.....>>>>>>.>...<<<<<.......>>>>>>>>>>>..... .((((((..((((.....[..)))).(((((.......))))).....(((((..]....)))))))))))..... Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure VI-B); tRNAPhe 6wdh 5 77 4.3 RF00005 URS000041AF00_562 32612237 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>.>....<<<<<.......>>>>>>>>>>>..... .((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))..... Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure IV-B1); tRNAfMet 6wdh 6 77 4.3 RF00005 URS000041AF00_562 32612237 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((.(......[..).)).(((((.......))))).....(((((..]....)))))))))))..... Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure IV-B1); tRNAfMet 6wdh 7 73 4.3 RF00005 URS00005AA258_562 32612237 0030533 0006412 562 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggca <<<<<<...<<<<........>>>><<<<<<.......>>>>>.>...<<<<<.......>>>>>.>>>>>>. (((((((..((((.....[..))))((((((.......))))).)...(((((..]....)))))))))))). Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure IV-B1); tRNAPhe 6wdi 5 77 4.0 RF00005 URS000041AF00_562 32612237 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>.>....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure IV-B2); tRNAfMet 6wdi 6 77 4.0 RF00005 URS000041AF00_562 32612237 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure IV-B2); tRNAfMet 6wdi 7 73 4.0 RF00005 URS00005AA258_562 32612237 0030533 0006412 562 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggca <<<<<<<..<<<<........>>>><<<<<<<.....>>>>>>.>...<<<<<.......>>>>>>>>>>>>. (((((((..((((........))))((((((.......))))).)...(((((.......)))))))))))). Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure IV-B2); tRNAPhe 6wdj 5 77 3.7 RF00005 URS000041AF00_83333 32612237 0030533 0006412 83333 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))..... Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure V-A1); tRNAfMet 6wdj 6 77 3.7 RF00005 URS000041AF00_83333 32612237 0030533 0006412 83333 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure V-A1); tRNAfMet 6wdj 7 76 3.7 RF00005 URS00005AA258_83333 32612237 0030533 0006412 83333 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..))))((((((.......))))).)...(((((..]....)))))))))))).... Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure V-A1); tRNAPhe 6wdk 5 77 3.6 RF00005 URS000041AF00_562 32612237 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure V-A2); tRNAfMet 6wdk 6 77 3.6 RF00005 URS000041AF00_562 32612237 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure V-A2); tRNAfMet 6wdk 7 76 3.6 RF00005 URS00005AA258_562 32612237 0030533 0006412 562 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).(((((.......))))).....(((((..]....)))))))))))).... Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure V-A2); tRNAPhe 6wdl 5 77 3.7 RF00005 URS000041AF00_83333 32612237 0030533 0006412 83333 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))..... Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure V-B1); tRNAfMet 6wdl 6 77 3.7 RF00005 URS000041AF00_83333 32612237 0030533 0006412 83333 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))..... Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure V-B1); tRNAfMet 6wdl 7 76 3.7 RF00005 URS00005AA258_83333 32612237 0030533 0006412 83333 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..))))((((((.......))))).)...(((((..]....)))))))))))).... Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure V-B1); tRNAPhe 6wdm 5 77 3.6 RF00005 URS000041AF00_562 32612237 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure V-B2); tRNAfMet 6wdm 6 77 3.6 RF00005 URS000041AF00_562 32612237 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))..... Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure V-B2); tRNAfMet 6wdm 7 76 3.6 RF00005 URS0000099A18_562 32612237 0030533 0006412 562 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..))))((((((.......))))).)...(((((..]....)))))))))))).... Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure V-B2); tRNAPhe 6wll A 171 10.0 RF00504,RF00504 URS0001A24B5C_851 32616928 0006545 851 ggaaucggaugaagauaugaggagagauuucauuuuaaugaaacaccgaagaaguaaaucuuucagguaaaaaggacucauauuggacgaaccucuggagagcuuaucuaagagauaacaccgaaggagcaaagcuaauuuuagccuaaacucucagguaaaaggacggag ....<<<......<<<<<<<<......<<<<<<....>>>>>>.<<<...<<<<.....>>>.>.>>>........>>>>>>>>...>>>..<<<<<......<<<<<.....>>>>>.<<<...<<<<....<<<<....>>>>.....>>>>..>>>.......>>>>> ....(((......((((((((....(.((.(((....))).)))(((...((((.....))).).)))........))))))))...)))..(((((....(.(((((.....))))))(((...((((....(((......))).....))).).))).......))))) Apo F. nucleatum glycine riboswitch models, 10.0 Angstrom resolution; RNA (171-MER) 6wlm A 171 7.4 RF00504,RF00504 URS0001A24B5C_851 32616928 0006545 851 ggaaucggaugaagauaugaggagagauuucauuuuaaugaaacaccgaagaaguaaaucuuucagguaaaaaggacucauauuggacgaaccucuggagagcuuaucuaagagauaacaccgaaggagcaaagcuaauuuuagccuaaacucucagguaaaaggacggag .<..<<<......<<<<<<<<......<<<<<<<..>>>>>>>.<<<...<<<<.....>>>.>.>>>........>>>>>>>>...>>>.><<<<.......<<<<<<...>>>>>>.<<<...<<<<....<<<<....>>>>.....>>>>..>>>........>>>> ....(((......((((((((....(.((.((((..)))).)))(((...((((....[))).).)))........))))))))...)))..(((((....(.(((((.....))))))(((...((((....(((......)))....]))).).))).......))))) F. nucleatum glycine riboswitch with glycine models, 7.4 Angstrom resolution; RNA (171-MER) 6wln A 349 10.0 RF00028 URS0001A24B45_32630 32616928 0000372 32630 ggaucuuacuugguagacucgcaggaagucuaccgaguaagagaaagaggaaagacggccaaauugcgggaaaggggacaacagccguucaguaccaagucucagggaaacuucagauggccucgcaaaggguaugguaauaagcugacggacaugguccuaaccacgcagucaaguccuaagucaacagccuuggcuguugauauggaugcauuucgauccaaccgaggcucauucuuguaauucauggccgucggggaggcacuucggugccucugauaacaacuugaaauaagguuggcucaacggcgcgugacagacaauucgcgcuggaacugcagucggaccu ...<<<<<<<<<<<<<<<<.((....>>>>>>>>>>>>>>>>...........<<<<<<<<.<<<<<<<<<<.<<<........<<<.<<<<.<<...<<<<..<......>..>>>>..<<<.))..>>>.....>>......>>>>>>>............{{{{[[[[[...<<<<<..<<<<<<<<<....>>>>>>>>>>.>>>>.......[[.((((((....>>>.>>>>>>>>>>...>>>>>>>>..<<<<<<<<....>>>>>>>>..................)))))).]]..<<<<<<<.<<.......>>>>>>>>>..]]]]].}}.}}.... ...((((((((((((((((.[[....))))))))))))))))...........((((((((.((((((((((.(((........(((.((((((((..((((..((....))..))))..(((.]]..)))....)))....).)))))))............[[[[[[[[[...((..(..(((((((((....))))))))))...)).......[[.[[[[[[....))).))))))))))...))))))))..((((((((....))))))))..................]]]]]].]]..(((((((.((.......)))))))))..]]]]].]].]].... hc16 ligase product models, 10.0 Angstrom resolution; RNA (349-MER) 6wlo A 338 11.0 RF00028 URS0001A24B6E_32630 32616928 0000372 32630 gguagacucgcaggaagucuaccgaguaagagaaagaggaaagacggccaaauugcgggaaaggggacaacagccguucaguaccaagucucagggaaacuucagauggccucgcaaaggguaugguaauaagcugacggacaugguccuaaccacgcagucaaguccuaagucaacagccuuggcuguugauauggaugcauuucgauccaaccgaggcucauucuuguaauucauggccgucggggaggcacuucggugccucugauaacaacuugaaauaagguuggcucaacggcgcgugacagacaauucgcgcuggaacugcagucggaccu <<<<<<<<.((....>>>>>>>>...................<<<<<<<<<<<<<<<<<<<.<<<........<<<.<<<<<<<<..<<<<..<<....>>..>>>>..<<<.))..>>>....>>>.....>>>>>>>>............{{{{[[[[[.<<<<<<...<<<<<<<<<....>>>>>>>>>..>>>>...>>..[[.((((((....>>>.>>>>>>>>>>>..>>>>>>>>..<<<<<<<<....>>>>>>>>..................)))))).]]..<<<<<<<.<<.......>>>>>>>>>..]]]]].}}.}}.... ((((((((.[[....))))))))...................((((((((.((((((((((.(((........(((.((((((((..((((..((....))..))))..(((.]]..)))....)))....).)))))))............[[[[[[[[[.(.((((..((((((((((....))))))))).)))))....)..[[.[[[[[[....))).))))))))))...))))))))..((((((((....))))))))..................]]]]]].]]..(((((((.((.......)))))))))..]]]]].]].]].... hc16 ligase models, 11.0 Angstrom resolution; RNA (338-MER) 6wlq A 119 4.7 RF00634 URS0000ABD039_1785 32616928 0010468,0046500 1785 ggucaugagugccagcgucaagccccggcuugcuggccggcaacccuccaaccgcgguggggugccccgggugaugaccagguugaguagccgugacggcuacgcggcaagcgcggguc <<<<......<<<<<<....<<.(((((>>.>>>>>>.<<<<.<<<<<<..[[[[>>.>>>>>>>>)))))....>>>>..<<<<.<<<<<<<...>>>>>>>.>>>>....]]]]... ((((....(.((((((....((.[[[[[)).)))))))((((.((((((..{{{{)).))))))))]]]]]....))))..((((.(((((((...))))))).))))....}}}}... Apo SAM-IV riboswitch models, 4.7 Angstrom resolution; RNA (119-MER) 6wlr A 119 4.8 RF00634 URS0000ABD039_1785 32616928 0010468,0046500 1785 ggucaugagugccagcgucaagccccggcuugcuggccggcaacccuccaaccgcgguggggugccccgggugaugaccagguugaguagccgugacggcuacgcggcaagcgcggguc <<<<......<<<<<<....<<.(((((>>.>>>>>>.<<<.<<<<<<<..[[[[>>.>>>>>>>>)))))....>>>>..<<<<.<<<<<<.....>>>>>>.>>>>....]]]]... ((((....(.((((((....((.[[[[[)).)))))))(((..(((.((..{{{{))..))).)))]]]]]....))))..((((.((((((.....)))))).))))....}}}}... SAM-IV riboswitch with SAM models, 4.8 Angstrom resolution; RNA (119-MER) 6wls A 388 6.8 RF00028 URS0001A24B65_5911 32616928 0000372 5911 ggagggaaaaguuaucaggcaugcaccugguagcuagucuuuaaaccaauagauugcaucgguuuaaaaggcaagaccgucaaauugcgggaaaggggucaacagccguucaguaccaagucucaggggaaacuuugagauggccuugcaaaggguaugguaauaagcugacggacaugguccuaaccacgcagccaaguccuaagucaacagaucuucuguugauauggaugcaguucacagacuaaaugucggucggggaagauguauucuucucauaagauauagucggaccucuccuuaaugggagcuagcggaugaagugaugcaacacuggagccgcugggaacuaauuuguaugcgaaaguauauugauuaguuuuggagu .........<<<<<<<<<<..{{{.>>>>>>>>>>.[[[[[((((((......<<<<<<<)))))).]]]]]..<<<<<.<....<<<<<<...<<<<<<.....<<<.<<<<.<<...<<<<<<<<<....>>>>>>>>>..<<..}}}..>>.....>>......>>>>>>>....>>>>>>..>>.>>>><<...<<<<...<<<<<<<<.....>>>>>>>>..>>>>...>>...[.(((((...>.>>>>>.<<<<<<<.....>>>>>>>........)))))]..[[.<<<<<....>>>>>(((((((....(((>>>>>>>.)))....))))))).<<<<<<<<.<<<<<<....>>>>>>.>>>>>>>>..]]... .........((((((((((..{{{.)))))))))).(((((((((((......[[[[[[[)))))).)))))..(((((.(....((((((....(((((.....(((.((((((((..(((((((((....)))))))))..((..}}}..))....)))....).)))))))....)))))...)).))))((...((((....(((((((.....)))))))...))))...))...[.[[[[[...).))))).(((((((.....)))))))........]]]]]]..((.(((((....)))))(((((((....(((]]]]]]].)))....))))))).((((((((.((((((....)))))).))))))))..))... Tetrahymena ribozyme models, 6.8 Angstrom resolution; RNA (388-MER) 6wlt A 231 4.8 RF00504 URS0001A24B5D_666 32616928 0006545 666 gguccguugaagacugcaggagagugguuguuaaccagauuuuaacaucugagccaaauaacccgccgaagaaguaaaucuuucaggugcauuauucuuagccauauauuggcaacgaauaagcgaggacuguaguuggaggaaccucuggagagaaccguuuaaucggucgccgaaggagcaagcucugcgcauaugcagagugaaacucucaggcaaaaggacagagga ..<<<......<<<<<<<<......<<<<<<<...<<<<<......>>>>>.....>>>>>>>.<<<...<<<<.....>>>>..>>><<.<<<<<<<<.<<<<.....>>>>>>.>>>>>>>>.....>>>>>>>>...>>>.<<<<<<......<<<<......>>>>.<<<...<<<<...<<<<<<<<....>>>>>>>>....>>>.>.>>>.......>>>>>>. ..(((......((((((((......(((((((...(((((......))))).....))))))).(((...((((.....))))..)))((.((((((.(.((((.....)))))..)))))))).....))))))))...))).((((((....(.((((......)))))(((...((((...((((((((....))))))))....))).).))).......)))))). Apo V. cholerae glycine riboswitch models, 4.8 Angstrom resolution; RNA (231-MER) 6wlu A 231 5.7 RF00504 URS0001A24B5D_666 32616928 0006545 666 gguccguugaagacugcaggagagugguuguuaaccagauuuuaacaucugagccaaauaacccgccgaagaaguaaaucuuucaggugcauuauucuuagccauauauuggcaacgaauaagcgaggacuguaguuggaggaaccucuggagagaaccguuuaaucggucgccgaaggagcaagcucugcgcauaugcagagugaaacucucaggcaaaaggacagagga ..<<<......<<<<<<<<......<<<<<<<...<<<<<......>>>>>.....>>>>>>>.<<<...<<<<.....>>>>..>>><<.<<<<<<.<.<<<<.....>>>>.>.>>>>>>>>.....>>>>>>>>...>>>.<<<<<<......<<<<......>>>>.<<<...<<<<...<<<<<<<<....>>>>>>>>....>>>.>.>>>.......>>>>>>. ..(((......((((((((....(.(((((((...(((((......))))).....))))))))(((...((((.....))))..)))((.((((((.(.((((.....)))).).)))))))).....))))))))...))).((((((....(.((((......)))))(((...((((...((((((((....))))))))....))).).))).......)))))). V. cholerae glycine riboswitch with glycine models, 5.7 Angstrom resolution; RNA (231-MER) 6wnw 5 77 3.2 RF00005 URS000041AF00_562 32518240 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Active 70S ribosome without free 5S rRNA and bound with A- and P- tRNA; tRNAfMet 6wnw 7 76 3.2 RF00005 URS00005AA258_562 32518240 0030533 0006412 562 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).(((((.......))))).....(((((..]....)))))))))))).... Active 70S ribosome without free 5S rRNA and bound with A- and P- tRNA; tRNAPhe 6woo 3 76 2.9 RF00005 URS00021ED90D_4932 33024099 0030533 0006412 4932 agcgccguggcgcagugggaagcgcgcagggcucauaacccugauguccucggaucgaaaccgagcggcgcuacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))).... CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP; Met-tRNA-iMet 6wtl A 124 2.85 RF00379 URS000197CF5D_9606 0180001 0010468 9606 nguugccgaauccauaugugguacggaggaaccgcuuuuugggguuaaucugcagugaagcugcaguagggauaccuucugucccgcacccgacagcuaacuccggaggcaauaaaggaaggag ...[[[[....<<<....>>>..(((((....{........[[[[....<<<<<<.....>>>>>>..(((((.<<<<<<)))))..]]]]....}....)))))..]]]].....>>>>>>.. ...((((....(((....)))..(((((....(.....{.(((((....((((((.....))))))..(((((.[[[[[[)))))..)))).}).)....)))))..)))).....]]]]]].. Structure of Human pir-miRNA-19b-2 Apical Loop and One-base-pair Fused to the YdaO Riboswitch Scaffold; RNA (124-MER) 6wtr A 125 3.082 RF00379 URS000197CF84_9606 0180001 0010468 9606 nguugccgaauccuuuacuugguacggaggaaccgcuuuuugggguuaaucugcagugaagcugcaguagggauaccuucugucccgcacccgacagcuaacuccggaggcaauaaaggaaggag ...[[[[....<<.......>>..(((((....{........[[[[....<<<<<<.....>>>>>>..(((((.<<<<<<)))))..]]]]....}....)))))..]]]].....>>>>>>.. ...((((....((.......))..(((((....(.....{.(((((....((((((.....))))))..(((((.[[[[[[)))))..)))).}).)....)))))..)))).....]]]]]].. Structure of Human pir-miRNA-300 Apical Loop Fused to the YdaO Riboswitch Scaffold; RNA (125-MER) 6wzr A 64 3.2 RF01750 URS0000868535_861 32795418 0006730,1900371 861 guuauaugacugacggaacguggaauuaaccacaugaaguauaacgaugccgaccgucugggcg <<<<<<<..<.(((((...<<<<......>>>>..>..>>>>>>>..<<<<..)))))..>>>> (((((((..(.[[[[[...((((......))))..)..)))))))...(((..]]]]]..))). Fusibacterium ulcerans ZTP riboswitch bound to p-1-pyridinyl AICA; Fusibacterium ulcerans ZTP riboswitch 6wzr B 57 3.2 RF01750 URS0000868535_861 32795418 0006730,1900371 861 uuauaugacugacggaacguggaauuaaccacaugaaguaugccgaccgucugggcg ..((((..(.<<<<<...<<<<......>>>>..)..))))(((..>>>>>..))). ..((((..(.[[[[[...((((......))))..)..))))(((..]]]]]..))). Fusibacterium ulcerans ZTP riboswitch bound to p-1-pyridinyl AICA; Fusibacterium ulcerans ZTP riboswitch 6wzs B 60 3.23 RF01750 URS0000868535_861 32795418 0006730,1900371 861 guuauaugacugacggaacguggaauuaaccacaugaaguauacgccgaccgucugggcg [[.((((..(.<<<<<...<<<<......>>>>..)..))))]](((..>>>>>..))). ((.((((..(.[[[[[...((((......))))..)..))))))(((..]]]]]..))). Fusibacterium ulcerans ZTP riboswitch bound to m-1-pyridinyl AICA; Fusibacterium ulcerans ZTP riboswitch 6wzs A 62 3.23 RF01750 URS0000868535_861 32795418 0006730,1900371 861 guuauaugacugacggaacguggaauuaaccacaugaaguauaacggccgaccgucugggcg <<<<<<<..<.(((((...<<<<......>>>>..>..>>>>>>>.<<<..)))))..>>>. (((((((..(.[[[[[...((((......))))..)..))))))).(((..]]]]]..))). Fusibacterium ulcerans ZTP riboswitch bound to m-1-pyridinyl AICA; Fusibacterium ulcerans ZTP riboswitch 6x6t A 76 3.2 RF00005 URS000080DFF5_562 32820061 0030533 0006412 562 cgcgggguggagcagccgguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))..... Cryo-EM structure of an Escherichia coli coupled transcription-translation complex B1 (TTC-B1) containing an mRNA with a 24 nt long spacer, transcription factors NusA and NusG, and fMet-tRNAs at P-site and E-site; E-site and P-site tRNA (fMet) 6x6t B 76 3.2 RF00005 URS000080DFF5_562 32820061 0030533 0006412 562 cgcgggguggagcagccgguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<........>>>>.<<<<.........>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((........)))).(((...........))).....(((((.......)))))))))))..... Cryo-EM structure of an Escherichia coli coupled transcription-translation complex B1 (TTC-B1) containing an mRNA with a 24 nt long spacer, transcription factors NusA and NusG, and fMet-tRNAs at P-site and E-site; E-site and P-site tRNA (fMet) 6x7f A 76 3.5 RF00005 URS000080DFF5_562 32820061 0030533 0006412 562 cgcgggguggagcagccgguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))..... Cryo-EM structure of an Escherichia coli coupled transcription-translation complex B2 (TTC-B2) containing an mRNA with a 24 nt long spacer, transcription factors NusA and NusG, and fMet-tRNAs at P-site and E-site; E-site and P-site tRNA (fMet) 6x7f B 76 3.5 RF00005 URS000080DFF5_562 32820061 0030533 0006412 562 cgcgggguggagcagccgguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<........>>>>.<<<<.........>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((........)))).(((...........))).....(((((.......)))))))))))..... Cryo-EM structure of an Escherichia coli coupled transcription-translation complex B2 (TTC-B2) containing an mRNA with a 24 nt long spacer, transcription factors NusA and NusG, and fMet-tRNAs at P-site and E-site; E-site and P-site tRNA (fMet) 6x7k A 76 3.1 RF00005 URS000080DFF5_562 32820061 0030533 0006412 562 cgcgggguggagcagccgguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))..... Cryo-EM structure of an Escherichia coli coupled transcription-translation complex B3 (TTC-B3) containing an mRNA with a 24 nt long spacer, transcription factors NusA and NusG, and fMet-tRNAs at P-site and E-site; E-site and P-site tRNA (fMet) 6x7k B 76 3.1 RF00005 URS000080DFF5_562 32820061 0030533 0006412 562 cgcgggguggagcagccgguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<........>>>>.<<<<.........>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((........)))).(((...........))).....(((((.......)))))))))))..... Cryo-EM structure of an Escherichia coli coupled transcription-translation complex B3 (TTC-B3) containing an mRNA with a 24 nt long spacer, transcription factors NusA and NusG, and fMet-tRNAs at P-site and E-site; E-site and P-site tRNA (fMet) 6x9q A 76 4.8 RF00005 URS000080DFF5_562 32820061 0030533 0006412 562 cgcgggguggagcagccgguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))..... Cryo-EM structure of an Escherichia coli coupled transcription-translation complex B3 (TTC-B3) containing an mRNA with a 27 nt long spacer, transcription factors NusA and NusG, and fMet-tRNAs at P-site and E-site; E-site and P-site tRNA (fMet) 6x9q B 76 4.8 RF00005 URS000080DFF5_562 32820061 0030533 0006412 562 cgcgggguggagcagccgguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<........>>>>.<<<<.........>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((........)))).(((...........))).....(((((.......)))))))))))..... Cryo-EM structure of an Escherichia coli coupled transcription-translation complex B3 (TTC-B3) containing an mRNA with a 27 nt long spacer, transcription factors NusA and NusG, and fMet-tRNAs at P-site and E-site; E-site and P-site tRNA (fMet) 6xdq A 76 3.7 RF00005 URS000080DFF5_562 32820061 0030533 0006412 562 cgcgggguggagcagccgguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))..... Cryo-EM structure of an Escherichia coli coupled transcription-translation complex B3 (TTC-B3) containing an mRNA with a 30 nt long spacer, transcription factors NusA and NusG, and fMet-tRNAs at P-site and E-site; E-site and P-site tRNA (fMet) 6xdq B 76 3.7 RF00005 URS000080DFF5_562 32820061 0030533 0006412 562 cgcgggguggagcagccgguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<........>>>>.<<<<.........>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((........)))).(((...........))).....(((((.......)))))))))))..... Cryo-EM structure of an Escherichia coli coupled transcription-translation complex B3 (TTC-B3) containing an mRNA with a 30 nt long spacer, transcription factors NusA and NusG, and fMet-tRNAs at P-site and E-site; E-site and P-site tRNA (fMet) 6xdr A 76 4.7 RF00005 URS000080DFF5_562 32820061 0030533 0006412 562 cgcgggguggagcagccgguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))..... Escherichia coli transcription-translation complex B (TTC-B) containing an 27 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site; E-site and P-site tRNA (fMet) 6xdr B 76 4.7 RF00005 URS000080DFF5_562 32820061 0030533 0006412 562 cgcgggguggagcagccgguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<........>>>>.<<<<.........>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((........)))).(((...........))).....(((((.......)))))))))))..... Escherichia coli transcription-translation complex B (TTC-B) containing an 27 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site; E-site and P-site tRNA (fMet) 6xgf A 76 5.0 RF00005 URS000080DFF5_562 32820061 0030533 0006412 562 cgcgggguggagcagccgguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))..... Escherichia coli transcription-translation complex B (TTC-B) containing an 30 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site; E-site and P-site tRNA (fMet) 6xgf B 76 5.0 RF00005 URS000080DFF5_562 32820061 0030533 0006412 562 cgcgggguggagcagccgguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<........>>>>.<<<<.........>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((........)))).(((...........))).....(((((.......)))))))))))..... Escherichia coli transcription-translation complex B (TTC-B) containing an 30 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site; E-site and P-site tRNA (fMet) 6xhv 1w 74 2.4 RF00005 URS00005AA258_562 33462493 0030533 0006412 562 gcccgganagcucaggguagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcaccn <<<<<<<..<<<<......>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((...[..)))).((((.........)))).....(((((..]....)))))))))))).... Crystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.40A resolution; A-site tRNA 6xhv 1x 76 2.4 RF00005 URS000041AF00_562 33462493 0030533 0006412 562 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaaccn <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.40A resolution; P-site tRNA 6xhv 1y 74 2.4 RF00005 URS00005AA258_562 33462493 0030533 0006412 562 gcccgganagcucaggguagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<......>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((...[..)))).((((.........)))).....(((((..]....)))))))))))).... Crystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.40A resolution; E-site tRNA 6xhv 2w 72 2.4 RF00005 URS00005AA258_562 33462493 0030533 0006412 562 cccgganagcucagggagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcaccn <<<<<<..<<<<.....>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((...[.)))).((((.........)))).....(((((..]....)))))))))))..... Crystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.40A resolution; A-site tRNA 6xhv 2x 76 2.4 RF00005 URS000041AF00_562 33462493 0030533 0006412 562 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaaccn <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.40A resolution; P-site tRNA 6xhv 2y 73 2.4 RF00005 URS00005AA258_562 33462493 0030533 0006412 562 gcccgganagcucagggagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<.....>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((...[.)))).((((.........)))).....(((((..]....)))))))))))).... Crystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.40A resolution; E-site tRNA 6xhw 1w 74 2.5 RF00005 URS00005AA258_562 33462493 0030533 0006412 562 gcccgganagcucaggguagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcaccn <<<<<<<..<<<<......>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((...[..)))).((((.........)))).....(((((..]....)))))))))))).... Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.50A resolution; A-site tRNA 6xhw 1x 76 2.5 RF00005 URS000041AF00_562 33462493 0030533 0006412 562 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaaccn <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.50A resolution; P-site tRNA 6xhw 1y 74 2.5 RF00005 URS00005AA258_562 33462493 0030533 0006412 562 gcccgganagcucaggguagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<......>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((......)))).((((.........)))).....((.((.......)).))))))))).... Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.50A resolution; E-site tRNA 6xhw 2w 72 2.5 RF00005 URS00005AA258_562 33462493 0030533 0006412 562 cccgganagcucagggagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcaccn <<<<<<..<<<<.....>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((...[.)))).((((.........)))).....(((((..]....)))))))))))..... Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.50A resolution; A-site tRNA 6xhw 2x 76 2.5 RF00005 URS000041AF00_562 33462493 0030533 0006412 562 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaaccn <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.50A resolution; P-site tRNA 6xhw 2y 73 2.5 RF00005 URS00005AA258_562 33462493 0030533 0006412 562 gcccgganagcucagggagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<.....>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((...[.)))).((((.........)))).....(((((..]....)))))))))))).... Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.50A resolution; E-site tRNA 6xhy 1w 74 2.6 RF00005 URS00005AA258_562 33462493 0030533 0006412 562 gcccgganagcucaggguagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcaccn <<<<<<<..<<<<......>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((...[..)))).((((.........)))).....(((((..]....)))))))))))).... Crystal structure of the Thermus thermophilus 70S ribosome in complex with telithromycin, mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.60A resolution; A-site tRNA 6xhy 1x 76 2.6 RF00005 URS000041AF00_562 33462493 0030533 0006412 562 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaaccn <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the Thermus thermophilus 70S ribosome in complex with telithromycin, mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.60A resolution; P-site tRNA 6xhy 1y 74 2.6 RF00005 URS00005AA258_562 33462493 0030533 0006412 562 gcccgganagcucaggguagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<......>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((......)))).((((.........)))).....((.((.......)).))))))))).... Crystal structure of the Thermus thermophilus 70S ribosome in complex with telithromycin, mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.60A resolution; E-site tRNA 6xhy 2w 72 2.6 RF00005 URS00005AA258_562 33462493 0030533 0006412 562 cccgganagcucagggagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcaccn <<<<<<..<<<<.....>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((...[.)))).((((.........)))).....(((((..]....)))))))))))..... Crystal structure of the Thermus thermophilus 70S ribosome in complex with telithromycin, mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.60A resolution; A-site tRNA 6xhy 2x 76 2.6 RF00005 URS000041AF00_562 33462493 0030533 0006412 562 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaaccn <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the Thermus thermophilus 70S ribosome in complex with telithromycin, mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.60A resolution; P-site tRNA 6xhy 2y 73 2.6 RF00005 URS00005AA258_562 33462493 0030533 0006412 562 gcccgganagcucagggagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<.....>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((...[.)))).((((.........)))).....(((((..]....)))))))))))).... Crystal structure of the Thermus thermophilus 70S ribosome in complex with telithromycin, mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.60A resolution; E-site tRNA 6xii A 76 7.0 RF00005 URS000080DFF5_562 32820061 0030533 0006412 562 cgcgggguggagcagccgguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))..... Escherichia coli transcription-translation complex B (TTC-B) containing an 24 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site; E-site and P-site tRNA (fMet) 6xii B 76 7.0 RF00005 URS000080DFF5_562 32820061 0030533 0006412 562 cgcgggguggagcagccgguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<........>>>>.<<<<.........>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((........)))).(((...........))).....(((((.......)))))))))))..... Escherichia coli transcription-translation complex B (TTC-B) containing an 24 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site; E-site and P-site tRNA (fMet) 6xij A 76 8.0 RF00005 URS000080DFF5_562 32820061 0030533 0006412 562 cgcgggguggagcagccgguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))..... Escherichia coli transcription-translation complex A (TTC-A) containing an 24 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site; E-site and P-site tRNA (fMet) 6xij B 76 8.0 RF00005 URS000080DFF5_562 32820061 0030533 0006412 562 cgcgggguggagcagccgguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<........>>>>.<<<<.........>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((........)))).(((...........))).....(((((.......)))))))))))..... Escherichia coli transcription-translation complex A (TTC-A) containing an 24 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site; E-site and P-site tRNA (fMet) 6xiq AX 76 4.2 RF00005 URS000011107D_4932 32855298 0030533 0006412 4932 gcggauuuagcucaguugggagagcgccagacugaagaucuggagguccuguguucgauccacagaauucgcacca <<.......<<<<........>>>>..<.<<.......>>.>......<<<<<.......>>>>>.....>>.... (((..(...((((.....[..)))).((.(.........).)).....(((((..]....))))).)..))).... Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress; Transfer RNA 6xiq AZ 76 4.2 RF00005 URS000011107D_4932 32855298 0030533 0006412 4932 gcggauuuagcucaguugggagagcgccagacugaagaucuggagguccuguguucgauccacagaauucgcacca <<...<...<<<<........>>>>..<<<<.......>>>>......<<<<<.......>>>>>.>...>>.... (((.((...((((.....[..)))).((((.........)))).....(((((..]....))))).)).))).... Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress; Transfer RNA 6xir AX 73 3.2 RF00005 URS000011107D_4932 32855298 0030533 0006412 4932 gcggauuuagcucaguugggagagcgccagacugaagaucuggagguccuguguucgauccacagaauucgca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>. (((.(((..((((.....[..)))).(((((.......))))).....(((((..]....)))))))).))). Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress; Transfer RNA 6xir AZ 73 3.2 RF00005 URS000011107D_4932 32855298 0030533 0006412 4932 gcggauuuagcucaguugggagagcgccagacugaagaucuggagguccuguguucgauccacagaauucgca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>. (((.(((..((((.....[..)))).(((((.......))))).....(((((..]....)))))))).))). Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress; Transfer RNA 6xkn A 96 2.73 RF02680 URS0002311A1C_853 39413212 0008616 853 nagcaacuuaggauuuuaggcuccccggcguguaccaugccgggccgaacccauagggcuggcggucccugugcggucaaaauucauccgccggag ((((..((..<<<<<<.))))))<<<<<<<<<...>>>>>>>>>....<<<<<<<<<<........>>>>>>>.>>>..>>>>>>........... [[[[......((((((...]]]](((((((((...))))))))).....(((((((((........))))))).))...))))))........... Class III PreQ1 riboswitch mutant A52G; Class III PreQ1 riboswitch 6xko A 95 2.75 RF02680 URS000231199B_853 39413212 0008616 853 nagcaacuuaggauuuuaggcuccccggcgugaccaugccgggccaaacccauagggcuggcggucccugugcggucgaaauucauccgccggag ((((..((..<<<<<<.))))))<<<<<<<<....>>>>>>>>....<<<<<<<<<<........>>>>>>>.>>>..>>>>>>........... [[[[......((((((...]]]](((((((((..)))))))))....((((((((((........))))))).)))..))))))........... Class III PreQ1 riboswitch mutant A84G; Class III PreQ1 riboswitch 6xqd 1x 76 2.8 RF00005 URS000041AF00_562 32817463 0030533 0006412 562 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UUC-mRNA, and deacylated P-site tRNA at 2.80A resolution; P-site tRNA 6xqd 2x 76 2.8 RF00005 URS000041AF00_562 32817463 0030533 0006412 562 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UUC-mRNA, and deacylated P-site tRNA at 2.80A resolution; P-site tRNA 6xqe 1x 76 3.0 RF00005 URS000041AF00_562 32817463 0030533 0006412 562 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UAA-mRNA, and deacylated P-site tRNA at 3.00A resolution; P-site tRNA 6xqe 2x 76 3.0 RF00005 URS000041AF00_562 32817463 0030533 0006412 562 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UAA-mRNA, and deacylated P-site tRNA at 3.00A resolution; P-site tRNA 6xrz A 88 6.9 RF00507 URS00021ED9B3_2697049 32743589 0075523 2697049 guuuuuaaacggguuugcgguguaagugcagcccgucuuacaccgugcggcacaggcacuaguacugaugucguauacagggcuuuug ..<<......>>.....<<<<<<<<<.<<(((((>>>>>>>>>>>.<<<<<<<<<.........>>>.>>>>>>.....))))).... ..((......)).....(((((((((.(([[[[[))))))))))).(((((((((..(....).))).)))))).....]]]]].... The 28-kDa Frameshift Stimulation Element from the SARS-CoV-2 RNA Genome; Frameshift Stimulation Element from the SARS-CoV-2 RNA Genome 6xu7 B 75 4.9 RF00005 URS000080DDE9_7227 34283226 0030533 0006412 7227 agcagaguggcgcaguggaagcgugcugggcccauaacucagagguccgaggaucgaaaccuugcucugcuacca .<<<<<<..<<<<.......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ..(((((..((((.......)))).(((((.......))))).....(((((.......))))))))))...... Drosophila melanogaster Testis polysome ribosome; P-tRNA 6xz7 f 76 2.1 RF00005 URS00002905B5_83333 32144191 0030533 0006412 83333 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... E. coli 50S ribosomal subunit in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet).; Deacylated tRNAi(Met) 6xz7 g 76 2.1 RF00005 URS000011107D_4932 32144191 0030533 0006412 4932 gcggauuuancucagnngggagagcnccaganunaanaunuggagnucnugugnucgnuccacagaauucgcaccn <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).((((.........)))).....(((((..]....)))))))))))).... E. coli 50S ribosomal subunit in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet).; fMet-Phe-tRNA(Phe) 6xza f2 76 2.66 RF00005 URS00002905B5_83333 32144191 0030533 0006412 83333 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).; Deacylated tRNAi(Met) 6xzb f2 76 2.54 RF00005 URS00002905B5_83333 32144191 0030533 0006412 83333 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).; Deacylated tRNAi(Met) 6xzb g2 76 2.54 RF00005 URS000011107D_4932 32144191 0030533 0006412 4932 gcggauuuancucagnngggagagcnccaganunaanaunuggagnucnugugnucgnuccacagaauucgcaccn <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).((((.........)))).....(((((..]....)))))))))))).... E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).; fMet-Phe-tRNA(Phe) 6y0g B4 76 3.2 RF00005 URS00005AA258_9606 32268098 0030533 0006412 9606 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>><<<<<<<.....>>>>>>.>...<<<<<.......>>>>>>>>>>>>.... ..(((((..((((.....[..)))).(((((.......))))).....((.((..]....)).)))))))...... Structure of human ribosome in classical-PRE state; tRNA 6y0g D4 76 3.2 RF00005 URS00005AA258_9606 32268098 0030533 0006412 9606 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).(((((.......))))).....((.((..]....)).))))))))).... Structure of human ribosome in classical-PRE state; tRNA 6y2l B4 76 3.0 RF00005 URS00005AA258_9606 32268098 0030533 0006412 9606 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>><<<<<<<.....>>>>>>.>...<<<<<.......>>>>>>>>>>>>.... .((((((..((((.....[..)))).(((((.......))))).....((.((..]....)).))))))))..... Structure of human ribosome in POST state; tRNA 6y3g F 75 3.1 RF00005 URS00005AA258_562 32680846 0030533 0006412 562 gcccgganagcucagncggnagagcaggggauugaaaauccccgugnccuuggnucgauuccgaguccgggcacc <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>... (((((((..((((.....[..)))).((((.........)))).....(((((..]....))))))))))))... Crystal structure of phenylalanine tRNA from Escherichia coli; RNA (75-MER) 6y4b F 76 5.0 RF00005 URS00005AA258_562 32680846 0030533 0006412 562 gcccgganagcucagncggnagagcaggggauugaaaauccccguguccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).((((.........)))).....(((((..]....)))))))))))).... Structure of cyclodipeptide synthase from Candidatus Glomeribacter gigasporarum bound to Phe-tRNAPhe; RNA (77-MER) 6y50 2 50 4.1 RF00004 URS00003EE995_9606 32494006 0045131 0000348 0005686 9606 gccggcuaagaucaaguguaguaucuguucuuaucaguuuaauaucugau <<..>>...<<.<<.<<<...>>>.>>.>>..<<<<<........>>>>> ((()))...((.((.((.....)).)).))...((((........)))). 5'domain of human 17S U2 snRNP; U2 snRNA 6y53 2 98 7.1 RF00004 URS00003EE995_9606 32494006 0045131 0000348 0005686 9606 uccucgaggaggauuuuuggagcagggagauggaauaggagcuugcuccguccacuccacgcaucgaccugguauugcaguaccuccaggaacggugc <<<<..>>>>...............<<<<.<<<<...<<<<....>>>>.>>>>>>>>..<<<<<<.<<<<<.............>>>>>..>>>>>> ((((()))))...............(((..(((....((((....))))..))).)))..(((.((..((((.............))))...)).))) human 17S U2 snRNP low resolution part; U2 snRNA 6y57 B4 75 3.5 RF00005 URS0000326EAC_9606 32268098 0030533 0006412 9606 agcagaguggcgcagcggaagcgugcugggcccauaacccagaggucgauggaucgaaaccauccucugcuacca <<<<<<<..<<<<.......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... ((((.((..(((.........))).(((((.......))))).....(((((.......))))))).)))).... Structure of human ribosome in hybrid-PRE state; P/E tRNA 6y57 D4 73 3.5 RF00005 URS00005AA258_9606 32268098 0030533 0006412 9606 gcccggauagcucagggagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca ..<<<<...<<<<.....>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>.>>.>>..... .(..((...(...........)..((.(.......).))......((.............)).))..)..... Structure of human ribosome in hybrid-PRE state; A/P tRNA 6y5q 2 148 7.1 RF00004 URS00003EE995_9606 32494006 0045131 0000348 0005686 9606 gccggcuaagaucaaguguaguaucuguucuuaucaguuuaauaucugauuccucgaggaggauuuuuggagcagggagauggaauaggagcuugcuccguccacuccacgcaucgaccugguauugcaguaccuccaggaacggugc <<..>>...<<.<<.<<<...>>>.>>.>>..<<<<<........>>>>><<<<..>>>>...............<<<<.<<<<...<<<<....>>>>.>>>>>>>>..<<<<<<.<<<<<.............>>>>>..>>>>>> ((()))...((.((.((.....)).)).))...((((........)))).((((()))))...............(((..(((....((((....))))..))).)))..(((.((..((((.............))))...)).))) human 17S U2 snRNP; U2snRNA 6y69 w 74 2.86 RF00005 URS0000D77936_83333 32601485 0030533 0006412 83333 cgcgggguggagcaggguagcucgucuggcucauaaccagaagaucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((...[..)))).(((((.......))))).....(.(((..]....))).)))))))..... Cryo-EM structure of an Escherichia coli 70S ribosome in complex with antibiotic TetracenomycinX; E-site tRNA 6yal 1 75 3.0 RF00005 URS0000326EAC_9986 32268096 0030533 0006412 9986 agcagaguggcgcagcggaagcgugcugggcccaunacccagaggucgauggaucgaaaccauccucugcuacca <<<<<<<..<<<<.......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((...(((.......)))..(((((.......))))).....(((((.......)))))))))))).... Mammalian 48S late-stage initiation complex with beta-globin mRNA; initiator methionylated tRNA 6yam 1 75 3.6 RF00005 URS0000326EAC_9986 32268096 0030533 0006412 9986 agcagaguggcgcagcggaagcgugcugggcccaunacccagaggucgauggaucgaaaccauccucugcuacca <<<<<<<..<<<<.......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((...(((.......)))..(((((.......))))).....(((((.......)))))))))))).... Mammalian 48S late-stage translation initiation complex (LS48S+eIF3 IC) with beta-globin mRNA; initiator methionylated tRNA 6yan 1 75 3.48 RF00005 URS0000326EAC_9986 32268096 0030533 0006412 9986 agcagaguggcgcagcggaagcgugcugggcccaunacccagaggucgauggaucgaaaccauccucugcuacca <<<<<<<..<<<<.......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((...(((.......)))..(((((.......))))).....(((((.......)))))))))))).... Mammalian 48S late-stage translation initiation complex with histone 4 mRNA; initiator methionylated tRNA 6ybv w 75 3.8 RF00005 URS0000326EAC_9606 32883864 0030533 0006412 9606 agcagaguggcgcagcggaagcgugcugggcccauaacccagaggucgauggaucgaaaccauccucugcuacca .<<<<<<....<<.......>>...<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((....((.......))...(((((.......))))).....(((((.......)))))))))))..... Structure of a human 48S translational initiation complex - eIF2-TC; Initiator methionine tRNA 6ydp AA 960 3.0 RF02541,RF02540,RF00177,RF01959,RF00005,RF00005,RF00005,RF00005,RF00005,RF00005,RF00005,RF00005,RF00005,RF00005,RF00005,RF00005,RF00005,RF00005,RF00005,RF00005,RF00005,RF00005,RF00005 URS0001A24B67_9823 32602580 0003735,0030533 0006412 0005840 9823 acagguuugguccuggccuuucuauuaauucuuaauaaaauuacacaugcaaguauccgcgccccggugagaaugcccuccagaucuuaaagaucaaaaggagcagguaucaagcacaccuauaacgguagcucauaacgccuugcucaaccacacccccacgggaaacagcagugauaaaaauuaagccaugaacgaaaguuugacuaaguuauauuaauuagaguugguaaaucucgugccagccaccgcggucauacgauuaacccaaauuaauagauccacggcguaaagaguguuuaagaaaaaaaaucacaauagaguuaaauuauaacuaagcuguaaaaagcccuaguuaaaauaaaauaacccacgaaagugacucuaauaauccugacacacgauagcuaggacccaaacugggauuagauaccccacuaugccuagcccuaaacccaaauaguuacauaacaaaacuauucgccagaguacuacucgcaacugccuaaaacucaaaggacuuggcggugcuucacauccaccuagaggagccuguucuauaaucgauaaaccccgauagaccuuaccaacccuugccaauucagccuauauaccgccaucuucagcaaacccuaaaaaggaacaauaguaagcacaaucauagcacauaaaaacguuaggucaagguguagcuuauggguuggaaagaaaugggcuacauuuucuacauaagaauauccaccacacgaaaguuuuuaugaaacuaaaaaccaaaggaggauuuagcaguaaaucaagaauagagugcuugauugaauaaggccaugaagcacgcacacaccgcccgucacccuccucaagcauguaguaauaaaaauaaccuauauucaauuacacaaccaugcaagaagagacaagucguaacaagguaagcauacuggaaagugugcuuggauuacc ..((((..<<<<<<.)))).<<<<<<<<<..<<<<<<<<..<.<<<.<<<..<<....>>......<<.....<<<<<<...<<<<<...>>>>>...>>>.>>><<<....<<...<<<......>>>..>>......>>>..<.....>.>>.<<<....>>>.....>>>>>>>.........<<....<<<<....>>>>..>>...>>.>>>>>>...<.<<<<<<.....(((.....((.>>>)).......)))..>>>.>..>>>>>>>>>.....<<<((.....<<<<...<<..............<<<<<<.....<.<<<<<<.<<<......>>>..>>>>>>..>..........<<<....>>>>>>>>>......>>...>>>>....<<<<<<...<<...<<<<.<.....>.>>>>...>>>>>>>>..........<<<<<<......))...>>>>>>.>>>.<<<........<<....>>......>>>..>>>>>><<<<<.<<<<<<<...<<..<<<<<.<<<<<<<<<<<.....<<........>>..........<<<<<<<..........<<<.<<<..<<<<<<.......<<..<<<<<....>>>.......>>..>>......<<.....>>..........>>>...>>>>>>>>>...>>>>>>>..>>.>>>>>>>>.>...<<<<.....>>>>...........<....<<<<<<<......>>>>>>>....>.....>>>>>.....<<<<<<<.........>>>>>>>......>>...>>>>>>>>>>.>>....<..<<.<...<<<.<<..<<<<<..<<<<<...<<<.......>>>..>>>>>.....>>>>>..>>.>>>....>.>>...>.....<<<<<<<<<....>>>>>>>>>........ [.[[[[..(((((..]]]]](((((((((..((((((((..(.(((.(((..((....))......(((.....(((((...(((((...)))))...))).)).(((....((..((((......))).)))......)))..(.....)))).(((....))).....)))))))......(..((...(((((....)))).))).).)).))))))...(.((([[[.....(((.....((.]]])).......)))..))).)..))))))))).....((([[...(.((((...((..............(((((((......((((((.((........))..))))))......).....(.((....)))))))))......))...))))....((((((...((...((((.........))))...))))))))......{...(((((((.....]]..))))))))))).(((........((....))......)))...)))))(((((.(((((((...((..(((((..((((((((((.....((........))..........(((((((..(......).((.(((...((((((.(....((..(((((....))).......))..))......((.....))......).).)))...)).)))))....)))))))..)).)))))))).(...((((.....))))...........(....(((((((......)))))))....)..)..))))).....(((((((.........)))))))......))...)))))))))).))..(.(..((.(...(((.((..(((((..(((((...(((.......)))..))))).....)))))..)).)))....).))...)..)..(((((((((....)))))))))}....... 55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST); 12S rRNA 6ydp BA 1544 3.0 RF02541,RF02540,RF00177,RF01959,RF00005,RF00005,RF00005,RF00005,RF00005,RF00005,RF00005,RF00005,RF00005,RF00005,RF00005,RF00005,RF00005,RF00005,RF00005,RF00005,RF00005,RF00005,RF00005 URS0001A24B67_9823 32602580 0003735,0030533 0006412 0005840 9823 accaaagcuagcucaacauacuaaacaaauacaaaaauacaccaaaauaaaauaaaacauucaccuaacauuaaaguauaggagauagaaauuuuuauccugacgcuauagagauaguaccguaagggaaagaugaaagaauaaaauaaaaguaaaaaaaagcaaagauuaccccuucuaccuuuugcauaaugguuuaaccagaaaaaaucuaacaaagagaacuuuagcuagauaccccgaaaccagacgagcuacccaugagcaguuuaaaagaaccaacucaucuauguggcaaaauagugagaagacuuguagguagaggugaaaagccuaacgagccuggugauagcugguuguccgagaaagaauuuuaguucaaccuuaaaaauaccccaaaaacccuaaauuccaauguauuuuuaagagauagucuaaaaagguacagcuuuuuagaaacggauacaaccuugacuagagaguaaaaucuuaauacuaccauaguaggccuaaaagcagccaucaauugagaaagcguuaaagcucaacaaauucaccaacauaaucccaaaaacuaauaacaaacuccuagcccaauaccggacuaaucuauugaaacauagaagcaauaauguuaauaugaguaacaagaagccuuucuccucgcacacgcuuacaucaguaacuaauaauauacugauaauuaacaaccaauaaaccaaaacaacacuaaaacguuuauuaauuacauuguuaacccaacacaggagugcaccaaggaaagauuaaaagaaguaaaaggaacucggcaaacacaaaccccgccuguuuaccaaaaacaucaccucuagcauuacuaguauuagaggcaaugccugcccagugacaccaguuuaacggccgcgguauucugaccgugcaaagguagcauaaucacuuguucuccaaauaaggacuuguaugaauggccacacgaggguuuuacugucucuuacuuccaaucagugaaauuaaccuucccgugaagaggcgggaauaaaaaaauaagacgagaagacccuauggagcuuuaauuaacuauuccaaaaguuaauaacuuaacauggacuagcaauuucgguuggggugaccucggaguacaaaaaacccuccgagugauuuuaaucuagacaaaccagucaaaauaaccauaacaucacuuauugauccaaaauuuugaucaacggaacaaguuacccuagggauaacagcgcaauccuguucuagaguuccuaucgacaauaggguuuacgaccucgauguuggaucaggacacccaaauggugcaaccgcuauuaaagguucguuuguucaacgauuaaaguccuacgugaucugaguucagaccggagcaauccaggucgguuucuaucuauuauaaauuucucccaguacgaaaggacaagagaaaugggaccaaccucacaaacgcgucucagagauaauuaaugauuuaaucuuaaccuaauuaacucauaauaaauccagcccuagaacagggcaca <<.<.....<<<<<.......................................<......>...........<.....<<.....>>....>.........>>.>>>............<<....>>...................>....>>...........<<<.......>>>...<.<........>.>..<<<<<........<<<<<.<..<<....>>...>.>>>>>..<<.<..<<<<<.<.....<<<.<<<<<..<<<......>>>...<<<..<<<<........>>>>.>>>....>>>>>.>>>...<<<.....>>>......>.>>>>...>..>.>>..<<<<<.....<<<<....>>>>..<<<<<<<<<<<<.....<<........>>.....>>>>>>>>>>>.>....<<<<<<<<<......>>>>>>>>>...<<......>>....<<<<.<<<........................<<<.........>>>............<<<......>>>........................................>>>>>>>........>>>>>...<<<<<......>>>>>.........>>>>>.<......<<..<<<....>>><<<..<<<<........<<<<<....<<....>>..>>>>>......<<<..<<<<<<<.................>>>>>>>.......>>>.....<<......>>.>>>>.....>>>..<<<<....<<<<<<<.<<...............<<<<<<<<..<<<.........>>>...<<<<<<.............>>>>>>...<<<<.<<<..<<<<<....>>>..>>>>><<<<<<......>>>>>>........<...........<<<<<.......>>>>>.....>....>>>.>..>>.>>>>>>......>>.>>>>>>>.>>>>.>>.....>.....<<<<<........>>>>>.......<<<.<<<.<<......<<<<.<<<<<<..<<<<..<<<.<<<<.<<<<<<.>>>>>>....>>>>.>>>.>>>>..<<<<.....>>>><<<<<<...........>>>>>>.<<<<....<<...<<<......>>>...>>.........>>>>..........<<<....>>>............>>>>..>>>>>>.......<<<..<.<<<<<<...<<.......>>...>>>>>>...>.>>.>.......<<<<<.<<<<<<..<<.<<<<<<......>>>>>>...>>.<<<<<.....>>>>>.....>>>>>..>...>>>.>>....<<<<<<<....>>>.>>>>....>>..>>>>>>.<<.<<<<<<<.................>>>>>>><<<<<...<.........>.>>>>>.<<<.<.<<<<.................>>>>..>>>>.>>.........<<<<.......>>>>... ((.(...(..((((.......................................(...[..)........(..(.....((.]...))....)..)......)).)).............((....))....)..............)....))...........(((.......))).[.(.(........).)..(((((........(((((.(..((....))...).)))))..((.(...((((.(.....(((.((((((.(((.....[)))...(((..((((.......{)))).)))..).))))).))).(.(((.....)))...)..).))))......).))..(((((.....((((....))))...(((((((((((.....((........)).....)))))))))))......(((((((((......)))))))))...((......))....((((.(((...................(.(..(((.........)))..).)....(..(((......)))).......................................)))))))........)))))...(((((......))))).........))))).(......((..((((..))))(((..((((......(.(((((....((....))..)))))......(((..(((((((...........(..)..))))))).......))).)...((......)).)))).....)))..((((....(((((((.((..(....(.......((((((((.].((.........))....((((((.............))))))....(((.(((..(((((....)))..)))))(((((........)))))........((..........(((((.......)))))..)..)....)))....)).))))))..)..))).))))))).)))).)).....)..{..(((((.....]}.))))).......(((.(((.((......((((.((((((..((((..(((.((((.(((((.())))))....)))).))).))))..(((......[)))((((((..........]))))))((((((..)((.(.(((...[..))))..)).........))))..........(((....))).....)].....))))..))))))......((((..(.((((((...((.......))...))))))...).)).).)......((((.((((((..((.((((((......))))))...)).(((((.....))))).....)))))..)...))).).....(((((((....))).))))..}.))..)))))).((.(((((((......(....).....)))))))(((((...(.(.....).).))))).(((....(((.................)))....))).)).........((((.......))))... 55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST); 12S rRNA 6ydp BB 67 3.0 RF00005 URS0000D77942_9823 32602580 0030533 0006412 9823 guuaauguagcuuaaucaaagcaaggcacugaaaaugccuagaugagccucagcuccauaaacacca <<<.<<<..<<<.......>>>.<<<<<.......>>>>>....<<<<....>>>>>>>.>>>.... (((.(((..(((.......))).(((((.......)))))....((((.(.)))))))).))).... 55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST); CP tRNAPhe 6ydw AA 960 4.2 RF02541,RF02540,RF00177,RF01959,RF00005,RF00005,RF00005,RF00005,RF00005,RF00005,RF00005,RF00005,RF00005,RF00005,RF00005,RF00005,RF00005,RF00005,RF00005,RF00005,RF00005,RF00005,RF00005 URS0001A24B67_9823 32602580 0003735,0030533 0006412 0005840 9823 acagguuugguccuggccuuucuauuaauucuuaauaaaauuacacaugcaaguauccgcgccccggugagaaugcccuccagaucuuaaagaucaaaaggagcagguaucaagcacaccuauaacgguagcucauaacgccuugcucaaccacacccccacgggaaacagcagugauaaaaauuaagccaugaacgaaaguuugacuaaguuauauuaauuagaguugguaaaucucgugccagccaccgcggucauacgauuaacccaaauuaauagauccacggcguaaagaguguuuaagaaaaaaaaucacaauagaguuaaauuauaacuaagcuguaaaaagcccuaguuaaaauaaaauaacccacgaaagugacucuaauaauccugacacacgauagcuaggacccaaacugggauuagauaccccacuaugccuagcccuaaacccaaauaguuacauaacaaaacuauucgccagaguacuacucgcaacugccuaaaacucaaaggacuuggcggugcuucacauccaccuagaggagccuguucuauaaucgauaaaccccgauagaccuuaccaacccuugccaauucagccuauauaccgccaucuucagcaaacccuaaaaaggaacaauaguaagcacaaucauagcacauaaaaacguuaggucaagguguagcuuauggguuggaaagaaaugggcuacauuuucuacauaagaauauccaccacacgaaaguuuuuaugaaacuaaaaaccaaaggaggauuuagcaguaaaucaagaauagagugcuugauugaauaaggccaugaagcacgcacacaccgcccgucacccuccucaagcauguaguaauaaaaauaaccuauauucaauuacacaaccaugcaagaagagacaagucguaacaagguaagcauacuggaaagugugcuuggauuacc ..((((..<<<<<<.)))).<<<<<<<<<..<<<<<<<<..<.<<<.<<<..<<....>>......<<......<<<<<...<<<<<...>>>>>...>>>.>>.<<<....<<...<<<......>>>..>>......>>>..<.....>.>>.<<<....>>>.....>>>>>>>.........<<....<<<<....>>>>..>>...>>.>>>>>>...<.<<<<<<.....(((.....((.>>>)).......)))..>>>.>..>>>>>>>>>.....<<<((.....<<<<...<<..............<<<<<<.....<.<<<<<<.<<<......>>>..>>>>>>..>..........<<<....>>>>>>>>>......>>...>>>>....<<<<<<...<<...<<<<.<.....>.>>>>...>>>>>>>>..........<<<<<<......))...>>>>>>.>>>.<<<........<<....>>......>>>..>>>>>><<<<<.<<<<<<.....<..<<<<<..<<<<<<<<<<.....<<........>>..........<<<<<<<..........<<<.<<<..<<<<<<.......<<..<<<<<....>>>.......>>..>>......<<.....>>..........>>>...>>>>>>>>>...>>>>>>>..>>.>>>>>>>>.....<<<<.....>>>>...........<....<<<<<<<......>>>>>>>....>.....>>>>>.....<<<<<<<.........>>>>>>>......>.....>>>>>>>>>.>>....<..<<.<...<<<.<<..<<<<<..<<<<<...<<<<.....>>>>..>>>>>.....>>>>>..>>.>>>....>.>>...>.....<<<<<<<<<....>>>>>>>>>........ [.[[[[...((((..]]]]].((((((((..((((((((..(.(((.(((..((....))......(((.....(((((...(((((...)))))...))).)).(((....((..((((......))).)))......)))..(.....)))).(((....))).....)))))))......(..((...(((((....)))).))).).)).))))))...(.((([[[.....(((.....((.]]])).......)))..))).)..))))))))......((([[...(.((((...((..............(((((((......((((((.(((......)))..))))))......).....(.((....)))))))))......))...))))....((((((...((...((((.........))))...))))))))......{...(((((((.....]]..))))))))))).(((........((....))......)))...)))).(((((.((((((.....(..(((.(..((((((((((.....((........))..........(((((((..(......).((.(((...((((((.(........(((((....))).......))..........((.....))......).).)))...)).)))))....)))))))..)).)))))))).(...((((.....))))...........(....(((((((......)))))))....)..)..).))).....(((((((.........)))))))......).....))))))))).))..(.(..((.(...(((.((..(((((..(((((...(((.......)))..))))).....)))))..)).)))....).))...)..)..(((((((((....)))))))))}....... 55S mammalian mitochondrial ribosome with mtEFG1 and two tRNAMet (TI-POST); 12S rRNA 6ydw BA 1544 4.2 RF02541,RF02540,RF00177,RF01959,RF00005,RF00005,RF00005,RF00005,RF00005,RF00005,RF00005,RF00005,RF00005,RF00005,RF00005,RF00005,RF00005,RF00005,RF00005,RF00005,RF00005,RF00005,RF00005 URS0001A24B67_9823 32602580 0003735,0030533 0006412 0005840 9823 accaaagcuagcucaacauacuaaacaaauacaaaaauacaccaaaauaaaauaaaacauucaccuaacauuaaaguauaggagauagaaauuuuuauccugacgcuauagagauaguaccguaagggaaagaugaaagaauaaaauaaaaguaaaaaaaagcaaagauuaccccuucuaccuuuugcauaaugguuuaaccagaaaaaaucuaacaaagagaacuuuagcuagauaccccgaaaccagacgagcuacccaugagcaguuuaaaagaaccaacucaucuauguggcaaaauagugagaagacuuguagguagaggugaaaagccuaacgagccuggugauagcugguuguccgagaaagaauuuuaguucaaccuuaaaaauaccccaaaaacccuaaauuccaauguauuuuuaagagauagucuaaaaagguacagcuuuuuagaaacggauacaaccuugacuagagaguaaaaucuuaauacuaccauaguaggccuaaaagcagccaucaauugagaaagcguuaaagcucaacaaauucaccaacauaaucccaaaaacuaauaacaaacuccuagcccaauaccggacuaaucuauugaaacauagaagcaauaauguuaauaugaguaacaagaagccuuucuccucgcacacgcuuacaucaguaacuaauaauauacugauaauuaacaaccaauaaaccaaaacaacacuaaaacguuuauuaauuacauuguuaacccaacacaggagugcaccaaggaaagauuaaaagaaguaaaaggaacucggcaaacacaaaccccgccuguuuaccaaaaacaucaccucuagcauuacuaguauuagaggcaaugccugcccagugacaccaguuuaacggccgcgguauucugaccgugcaaagguagcauaaucacuuguucuccaaauaaggacuuguaugaauggccacacgaggguuuuacugucucuuacuuccaaucagugaaauuaaccuucccgugaagaggcgggaauaaaaaaauaagacgagaagacccuauggagcuuuaauuaacuauuccaaaaguuaauaacuuaacauggacuagcaauuucgguuggggugaccucggaguacaaaaaacccuccgagugauuuuaaucuagacaaaccagucaaaauaaccauaacaucacuuauugauccaaaauuuugaucaacggaacaaguuacccuagggauaacagcgcaauccuguucuagaguuccuaucgacaauaggguuuacgaccucgauguuggaucaggacacccaaauggugcaaccgcuauuaaagguucguuuguucaacgauuaaaguccuacgugaucugaguucagaccggagcaauccaggucgguuucuaucuauuauaaauuucucccaguacgaaaggacaagagaaaugggaccaaccucacaaacgcgucucagagauaauuaaugauuuaaucuuaaccuaauuaacucauaauaaauccagcccuagaacagggcaca <<.<.....<<<<<.......................................<......>...........<.....<<.....>>....>.........>>.>>>............<<....>>...................>....>>...........<<<.......>>>...<.<........>.>..<<<<<........<<<<<.<..<<....>>...>.>>>>>..<<.<..<<<<<.<.....<<<.<<<<<..<<<......>>>...<<<..<<<<........>>>>.>>>....>>>>>.>>>...<<<.....>>>......>.>>>>...>..>.>>..<<<<<.....<<<<....>>>>..<<<<<<<<<<<<.....<<........>>.....>>>>>>>>>>>.>....<<<<<<<<<......>>>>>>>>>...<<......>>....<<<<.<<<........................<<<.........>>>............<<<......>>>........................................>>>>>>>........>>>>>...<<<<<......>>>>>.........>>>>>.<......<<..<<<....>>><<<..<<<<........<<<<<....<<....>>..>>>>>......<<<..<<<<<<<.................>>>>>>>.......>>>.....<<......>>.>>>>.....>>>..<<<<....<<<<<<<.<<...............<<<<<<<<..<<<.........>>>...<<<<<<.............>>>>>>...<<<<.<<<..<<<<<....>>>..>>>>><<<<<<......>>>>>>........<...........<<<<<.......>>>>>.....>....>>>.>..>>.>>>>>>......>>.>>>>>>>.>>>>.>>.....>.....<<<<<........>>>>>.......<<<.<<<.<<......<<<<.<<<<<<..<<<<..<<<.<<<<.<<<<<<.>>>>>>....>>>>.>>>.>>>>..<<<<.....>>>><<<<<<...........>>>>>>.<<<<....<<...<<<......>>>...>>.........>>>>..........<<<....>>>............>>>>..>>>>>>.......<<<..<.<<<<<<...<<.......>>...>>>>>>...>.>>.>.......<<<<<.<<<<<<..<<.<<<<<<......>>>>>>...>>.<<<<<.....>>>>>.....>>>>>..>...>>>.>>....<<<<<<<....>>>.>>>>....>>..>>>>>>.<<.<<<<<<<.................>>>>>>><<<<<...<.........>.>>>>>.<<<.<.<<<<.................>>>>..>>>>.>>.........<<<<.......>>>>... ((.(...(..((((.......................................(...[..)........(..(.....((.]...))....)..)......)).)).............((....))....)..............)....))...........(((.......))).[.(.(........).)..(((((........(((((.(..((....))...).)))))..((.(...((((.(.....(((.((((((.(((.....[)))...(((..((((.......{)))).)))..).))))).))).(.((.......))...)..).))))......).))..(((((.....((((....))))...(((((((((((.....((........)).....)))))))))))......(((((((((......)))))))))...((......))....((((.(((.....................(..(((.........)))..)......(..(((......)))).......................................)))))))........)))))...(((((......))))).........))))).(......((..((((..))))(((..((((......(.(((((....((....))..)))))......(((..(((((((...........(..)..))))))).......))).)...((......)).)))).....)))..((((....(((((((.((..(....(.......((((((((.].((.........))....((((((.............))))))...((((.(((..(((((....)))..)))))(((((........)))))........((..........(((((.......)))))..)..)....))).)..)).))))).).)..))).))))))).)))).)).....)..{..(((((.....]}.))))).......(((.(((.((......((((.((((((..((((..(((.((((.(((((.())))))....)))).))).))))..(((......[)))((((((..........]))))))((((((..)((.(.(((...[..))))..)).........))))..........(((....))).....)].....))))..))))))......((((..(.((((((...((.......))...))))))...).)).).)......((((.((((((..((.((((((......))))))...)).(((((.....))))).....)))))..)...))).).....(((((((....))).))))..}.))..)))))).((.(((((((......(....).....)))))))(((((...(.(.....).).))))).(((.....((.................)).....))).)).........((((.......))))... 55S mammalian mitochondrial ribosome with mtEFG1 and two tRNAMet (TI-POST); 12S rRNA 6ydw BB 67 4.2 RF00005 URS0000D77942_9823 32602580 0030533 0006412 9823 guuaauguagcuuaaucaaagcaaggcacugaaaaugccuagaugagccucagcuccauaaacacca <<<.<<<..<<<.......>>>.<<<<<.......>>>>>....<<<<....>>>>>>>.>>>.... (((.(((..(((.......))).(((((.......)))))....((((.(.)))))))).))).... 55S mammalian mitochondrial ribosome with mtEFG1 and two tRNAMet (TI-POST); CP tRNA-Phe 6yef x 77 3.2 RF00005 URS000041AF00_668369 32852796 0030533 0006412 668369 cgcggggnggagcagccuggnagcucgucgggnucauaacccgaagnucgucggnucaaauccggcccccgcaaccn .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))..... 70S initiation complex with assigned rRNA modifications from Staphylococcus aureus; P-site tRNA 6ys3 v 75 2.58 RF00005 URS00004CF48A_469008 0030533 0006412 469008 gcgggcaucguauaauggcuauuaccucagccuuccaagcugaugaugcggguucgauucccgcugcccgcucca ..<<.....<............>..<...............>.....<<<<<.......>>>>>..>>....... ................................................((((.......))))............ Cryo-EM structure of the 50S ribosomal subunit at 2.58 Angstroms with modeled GBC SecM peptide; glycine-tRNA glyT 6ys5 7 20 3.0 RF00005 URS00021ED9C2_575584 32857965 0030533 0006412 575584 gucgggcucauaacccgaag .<<<<<.......>>>>>.. .(((((.......))))).. Acinetobacter baumannii ribosome-amikacin complex - 30S subunit head; E-site tRNA 6ysr w 76 3.1 RF00005 URS00021ED99D_562 32796827 0030533 0006412 562 gcccgganagcucagucgguagagcaggggauugaanauccccgunuccucggnucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>><<<<<<<.....>>>>>>.>...<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).((((.........)))).....(((((..]....)))))))))))).... Structure of the P+9 stalled ribosome complex; P-site fMet-Phe-tRNA(Phe) 6yss w 76 2.6 RF00005 URS00021ED99D_562 32796827 0030533 0006412 562 gcccgganagcucagucgguagagcaggggauugaanauccccgunuccucggnucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).((((.........)))).....(((((..]....)))))))))))).... Structure of the P+9 ArfB-ribosome complex in the post-hydrolysis state; P-site tRNAPhe 6yst w 76 3.2 RF00005 URS00021ED99D_562 32796827 0030533 0006412 562 gcccgganagcucagucgguagagcaggggauugaanauccccgunuccucggnucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).((((.........)))).....(((((..]....)))))))))))).... Structure of the P+9 ArfB-ribosome complex with P/E hybrid tRNA in the post-hydrolysis state; P/E-site tRNAPhe 6ysu w 76 3.7 RF00005 URS00021ED99D_562 32796827 0030533 0006412 562 gcccgganagcucagucgguagagcaggggauugaanauccccgunuccucggnucgauuccgaguccgggcacca <<<<<....<<<<........>>>><<<<<<<.....>>>>>>.>...<<<<<.......>>>>>..>>>>>.... (((((....((((.....[..)))).((((.........)))).....(((((..]....)))))..))))).... Structure of the P+0 ArfB-ribosome complex in the post-hydrolysis state; P-site tRNAPhe 6ytf 7 20 3.0 RF00005 URS00001BBAFC_575584 32857965 0030533 0006412 575584 gucgggcucauaacccgaag .<<<<<.......>>>>>.. .(((((.......))))).. Acinetobacter baumannii ribosome-tigecycline complex - 30S subunit head; E-site tRNA 6ywe bb 74 2.99 RF00005 URS00021ED8EC_5141 33056988 0030533 0006412 5141 ggcugaguagcucaaugguagagcauaccguucauaacgguauugucuguguucgauccacagcucagccacca <<<<<<<..<<<<.......>>>>.<<<<<<.....>>>>>>....<<<<<.......>>>>>>>>>>>>.... ..(((((..((((.......))))((((((.......))))))...(((((.......))))))))))...... The structure of the mitoribosome from Neurospora crassa in the P/E tRNA bound state; tRNA P/E state 6ywy bb 73 3.05 RF00005 URS00021ED924_5141 33056988 0030533 0006412 5141 ggcugaguagcucaaaguagagcauaccguucaaaacgguaaugaauguguucgauccacagcucagccacca <<<<<<<..<<<<......>>>><<<<<<<.....>>>>>>.>...<<<<.......>>>>.>>>>>>>.... (((((((..((((...[[.)))).(((((.......)))))...].((((..]....)))).))))))).... The structure of the mitoribosome from Neurospora crassa with bound tRNA at the P-site; P-site-tRNA 6z6l CC 75 3.0 RF00005 URS0000E60BA3_9606 32687489 0030533 0006412 9606 uccgauauagcguaacggcuaucacaucacgcuuucaccguggagaccgggguucgacuccccguaucggagcca <<<<<<<....<..........>...<<<<<.......>>>>>....<<<<<.......>>>>>>>>>>>>.... (((((((..(.(.....[....).).(((((.......)))).)...(((((..]....)))))))))))).... Cryo-EM structure of human CCDC124 bound to 80S ribosomes; tRNA 6z6m CC 85 3.1 RF00005,RF01852 URS00021ED8EE_9606 32687489 0030533 0006412 9606 guagucguggccgagugguuaaggcgauggacuugaaauccauuggggucuccccgcgcagguucgaauccugccgacuacgcca <<<<<<<..<<<..........>>><<<<<<.......>>>>>><<<<...>>>>..<<<<<.......>>>>>>>>>>>>.... (((((((..(((.(...[.)..))).(((((.......))))).((.(....)))..(((((..]....)))))))))))).... Cryo-EM structure of human 80S ribosomes bound to EBP1, eEF2 and SERBP1; tRNA 6z6n CC 75 2.9 RF00005 URS0000E60BA3_9606 32687489 0030533 0006412 9606 uccgauauagcguaacggcuaucacaucacgcuuucaccguggagaccgggguucgacuccccguaucggagcca <<<<<<<....<..........>...<<<<<.......>>>>>....<<<<<.......>>>>>>>>>>>>.... (((((((..(.(.....[....).).(((((.......)))))....(((((..]....)))))))))))).... Cryo-EM structure of human EBP1-80S ribosomes (focus on EBP1); tRNA 6zj3 S2 76 3.15 RF00005 URS000080E264_3039 33091122 0030533 0006412 3039 gcgcggauagcucagucgguagagcaggggauugaanauccccguguccuugguucgauuccgaguccgcgcacca ..<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>...... .(.(((...((((........)))).(((((.......)))))......(.((.......)).)..))).)..... Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis; A-tRNA 6zj3 S3 76 3.15 RF00005 URS00021ED908_3039 33091122 0030533 0006412 3039 gcgcggauagcucagucgguagagcaggggauucauaauccccguguccuugguucgauuccgaguccgcgcacca <<<<<<<..<<<<........>>>><<<<<<<.....>>>>>>.>...<<<...........>>>>>>>>>>.... (((((((..((((........)))).(((((.......)))))........(........)....))))))).... Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis; P-tRNA 6zj3 S4 76 3.15 RF00005 URS00021ED9CB_3039 33091122 0030533 0006412 3039 gcgcggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgcgcacaa <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((.(........).)).(((((.......))))).....((.((.......)).))))))))).... Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis; E-tRNA 6zm5 x 70 2.89 RF00005 URS00021ED990_9606 33602856 0030533 0006412 9606 uagggaauaguuuaaaaaacagcugacuuucaaucagcagauggagguucaauuccuccuucccuaacca <<<<<<<..<<<<...>>>>.<<<<<.......>>>>>....<<<<<.......>>>>>>>>>>>>.... (((((((..((((...)))).(((((.......)))))....(((((.......)))))))))))).... Human mitochondrial ribosome in complex with OXA1L, mRNA, A/A tRNA, P/P tRNA and nascent polypeptide; P-site tRNA 6zm6 x 70 2.59 RF00005 URS00021ED990_9606 33602856 0030533 0006412 9606 uagggaauaguuuaaaaaacagcugacuuucaaucagcagauggagguucaauuccuccuucccuaacca <<<<<<<..<<<<...>>>>.<<<<<.......>>>>>....<<<<<.......>>>>>>>>>>>>.... (((((((..((((...)))).(((((.......)))))....(((((.......)))))))))))).... Human mitochondrial ribosome in complex with mRNA, A/A tRNA and P/P tRNA; P-site tRNA 6zm7 CC 75 2.7 RF00005 URS0000E60BA3_9606 32680882 0030533 0006412 9606 uccgauauagcguaacggcuaucacaucacgcuuucaccguggagaccgggguucgacuccccguaucggagcca <<<<<<<..<.<..........>.>.<<<<<.......>>>>>....<<<<<.......>>>>>>>>>>>>.... (((((((..(.(.....[....).).(((((.......)))).)...(((((..]....)))))))))))).... SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complex; tRNA 6zme CC 75 3.0 RF00005 URS0000E60BA3_9606 32680882 0030533 0006412 9606 uccgauauagcguaacggcuaucacaucacgcuuucaccguggagaccgggguucgacuccccguaucggagcca <<<<<<<..<.<..........>.>.<<<<<.......>>>>>....<<<<<.......>>>>>>>>>>>>.... (((((((..(.(.....[....).).(((((.......)))).)...(((((..]....)))))))))))).... SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex; tRNA 6zmi CC 75 2.6 RF00005 URS0000E60BA3_9606 32680882 0030533 0006412 9606 uccgauauagcguaacggcuaucacaucacgcuuucaccguggagaccgggguucgacuccccguaucggagcca <<<<<<<..<.<..........>.>.<<<<<.......>>>>>....<<<<<.......>>>>>>>>>>>>.... (((((((..(.(.....[....).).(((((.......)))).)...(((((..]....)))))))))))).... SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex; tRNA 6zmo CB 87 3.1 RF00005 URS00021ED910_9606 32680882 0030533 0006412 9606 gucaggauggccgaguggucuaaggcgccagacucaaguucuggucuccggauggaggcguggguucgaaucccacuucugacacca <<<<<<...<<<...........>>><<<<<<.......>>>>>><<<<....>>>>..<<<<<.......>>>>>.>>>>>>.... (((((.(..(((...........))).(((((.......))))).((((....))))..(((((.......)))))).))))).... SARS-CoV-2 Nsp1 bound to the human LYAR-80S-eEF1a ribosome complex; tRNA 6zmo CC 75 3.1 RF00005 URS0000E60BA3_9606 32680882 0030533 0006412 9606 uccgauauagcguaacggcuaucacaucacgcuuucaccguggagaccgggguucgacuccccguaucggagcca <<<<<<<..<.<..........>.>.<<<<<.......>>>>>....<<<<<.......>>>>>>>>>>>>.... (((((((..(.(.....[....).).(((((.......)))).)...(((((..]....)))))))))))).... SARS-CoV-2 Nsp1 bound to the human LYAR-80S-eEF1a ribosome complex; tRNA 6zmw w 75 3.7 RF00005 URS0000326EAC_9606 32883864 0030533 0006412 9606 agcagaguggcgcagcggaagcgugcugggcccauaacccagaggucgauggaucgaaaccauccucugcuacca <<<<<<...<<<<.......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>.>>>>>>.... .((((((...(((.......)))..(((((.......))))).....(((((.......)))))))))))..... Structure of a human 48S translational initiation complex; Initiator Met-tRNA-i 6zp4 1 75 2.9 RF00005 URS00021ED8FE_9606 32680882 0030533 0006412 9606 agcagaguagcgcagcggaagcgugcugggcccauaacccagaggucgauggaucgaaaccauccucugcuacca <<<<<<<..<<<<.......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... .((((((..((((....[..)))).(((((.......))))).....(((((..]....)))))))))))..... SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 2; tRNA 6zqa D4 175 4.4 RF01846 URS00021ED97C_559292 32943521 0006396 0005730 559292 gucgacguacuucauaggaucauuucuauaggaaucgucacucuuugacucuucaaaagagccacugaauccaacuugguugaugagucccauaaccuuuguacccgugagaaagugccguugcuauggcgcgaugaucuacccauggguggguacaaauggcagucugacaagu .........................................................................<<<<<......<..........<<<<<<<<<<.....<.....<<<<<....>>>>>.>........<<<<..>>>>.>>>>>>>>.>>....>...>>>>> .........................................................................(((((......(..........((((((((((.(...(.....(((.(....).))).)......).((((..)))).)))))))).))....)...))))) Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state A (Poly-Ala); U3 snoRNA 6zqb D4 175 3.9 RF01846 URS00021ED97C_559292 32943521 0006396 0005730 559292 gucgacguacuucauaggaucauuucuauaggaaucgucacucuuugacucuucaaaagagccacugaauccaacuugguugaugagucccauaaccuuuguacccgugagaaagugccguugcuauggcgcgaugaucuacccauggguggguacaaauggcagucugacaagu .........................................................................<<<<<.................<<<<<<<.<<.....<.....<<<........>>>.>........<<<....>>>.>>.>>>>>.>>........>>>>> .........................................................................(((((......(..........(((((((..(.(...(.....(((((....))))).)......).((((..)))).)..))))).))....)...))))) Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state B2; U3 snoRNA 6zqc D4 230 3.8 RF01846 URS00021ED8E9_559292 32943521 0006396 0005730 559292 gucgacguacuucauaggaucauuucuauaggaaucgucacucuuugacucuucaaaagagccacugaauccaacuugguugaugagucccauaaccuuuguacccgugagaaauagcuugguccgcaauccuuagcgguucggccaucuauaauuuugaauaaaaauugugccguugcuauggcgcgaugaucuacccauggguggguacaaauggcagucugacaagu .........................................................................<<<<<.................<<<<<<<<<<.<...<...<<<..<<<.<<<.<<<<......>>>>>>>>>>.>>>.<<<<<......>>.>>>..<<<<<....>>>>>.>......>.<<<<..>>>>.>>>>>>>>.>>........>>>>> .........................................................................(((((......(..........((((((((((.(...(...(((..(((.(((.((.(......).)))))))).))).((((.(....).).)))..(((((....))))).)......).((((..)))).)))))))).))....)...))))) Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Pre-A1; U3 snoRNA 6zqd D4 223 3.8 RF01846 URS00021ED8E9_559292 32943521 0006396 0005730 559292 gucgacguacuucaaggaucaucuauaggaaucgucacucuuugacucuucccacugaauccaacuugguugaugagucccauaaccuuuguaccccagagugagaaauagcuugguccgcaauccuuagcgguucggccaucuauaauuuugaauaaaaauugugccguugcuauggcgcgaugaucacccauggguggguacaaauggcagucugacaagu ...............................................................<<<<<.................<<<<<<<<<<<....<........<<..<<<.<<<.<<<<......>>>>>>>>>>.>>..<<<<<<....>>>.>>>..<<<<......>>>>........><<<<..>>>>>>>>>>>>>.>>........>>>>> ...............................................................(((((......(..........(((((((((((....(...(....((..(((.(((.((((......)))))))))).))..((((((....))).)))..(((((....))))).)......)((((..))))))))))))).))....)...))))) Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Post-A1; U3 snoRNA 6zqe D4 223 7.1 RF01846 URS00021ED8E9_559292 32943521 0006396 0005730 559292 gucgacguacuucaaggaucaucuauaggaaucgucacucuuugacucuucccacugaauccaacuugguugaugagucccauaaccuuuguaccccagagugagaaauagcuugguccgcaauccuuagcgguucggccaucuauaauuuugaauaaaaauugugccguugcuauggcgcgaugaucacccauggguggguacaaauggcagucugacaagu ...............................................................<<<<<.................<<<<<<<<<<<....<.......<<<..<<<.<<<.<<<<......>>>>>>>>>>.>>>.<<<<<<....>>>.>>>..<<<<......>>>>........><<<<..>>>>>>>>>>>>>.>>........>>>>> ...............................................................(((((......(..........(((((((((((....(...(...(((..(((.(((.((((......)))))))))).))).((((((....))).)))..(((((....))))).)......)((((..))))))))))))).))....)...))))) Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-A (Poly-Ala); U3 snoRNA 6ztj AW 77 3.4 RF00005 URS00001BBAFC_562 32820062 0030533 0006412 562 cgcggggnggagcagccuggnagcucgucgggnucauaacccgaagaucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... E. coli 70S-RNAP expressome complex in NusG-coupled state (38 nt intervening mRNA); tRNA(fmet) P-site 6ztj AX 76 3.4 RF00005 URS00005AA258_562 32820062 0030533 0006412 562 gcccgganagcucagncggnagagcaggggauugaanauccccgunnccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).((((.........)))).....(((((..]....)))))))))))).... E. coli 70S-RNAP expressome complex in NusG-coupled state (38 nt intervening mRNA); Phe-NH-tRNA(Phe) A-site 6ztl AW 77 3.5 RF00005 URS00001BBAFC_562 32820062 0030533 0006412 562 cgcggggnggagcagccuggnagcucgucgggnucauaacccgaagaucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... E. coli 70S-RNAP expressome complex in collided state bound to NusG; tRNA(fmet) P-site 6ztl AX 76 3.5 RF00005 URS00005AA258_562 32820062 0030533 0006412 562 gcccgganagcucagncggnagagcaggggauugaanauccccgunnccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).((((.........)))).....(((((..]....)))))))))))).... E. coli 70S-RNAP expressome complex in collided state bound to NusG; Phe-NH-tRNA(Phe) A-site 6ztm AW 77 3.3 RF00005 URS00001BBAFC_562 32820062 0030533 0006412 562 cgcggggnggagcagccuggnagcucgucgggnucauaacccgaagaucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... E. coli 70S-RNAP expressome complex in collided state without NusG; tRNA(fmet) P-site 6ztm AX 76 3.3 RF00005 URS00005AA258_562 32820062 0030533 0006412 562 gcccgganagcucagncggnagagcaggggauugaanauccccgunnccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).((((.........)))).....(((((..]....)))))))))))).... E. coli 70S-RNAP expressome complex in collided state without NusG; Phe-NH-tRNA(Phe) A-site 6ztn AW 77 3.9 RF00005 URS00001BBAFC_562 32820062 0030533 0006412 562 cgcggggnggagcagccuggnagcucgucgggnucauaacccgaagaucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... E. coli 70S-RNAP expressome complex in NusG-coupled state (42 nt intervening mRNA); tRNA(fmet) P-site 6ztn AX 76 3.9 RF00005 URS00005AA258_562 32820062 0030533 0006412 562 gcccgganagcucagncggnagagcaggggauugaanauccccgunnccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).((((.........)))).....(((((..]....)))))))))))).... E. coli 70S-RNAP expressome complex in NusG-coupled state (42 nt intervening mRNA); Phe-NH-tRNA(Phe) A-site 6ztn AZ 76 3.9 RF00005 URS00005AA258_562 32820062 0030533 0006412 562 gcccgganagcucagncggnagagcaggggauugaanauccccgunnccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).((((.........)))).....((.((..]....)).))))))))).... E. coli 70S-RNAP expressome complex in NusG-coupled state (42 nt intervening mRNA); Phe-NH-tRNA(Phe) A-site 6zto AW 77 3.0 RF00005 URS00001BBAFC_562 32820062 0030533 0006412 562 cgcggggnggagcagccuggnagcucgucgggnucauaacccgaagaucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... E. coli 70S-RNAP expressome complex in uncoupled state 1; tRNA(fmet) P-site 6zto AX 76 3.0 RF00005 URS00005AA258_562 32820062 0030533 0006412 562 gcccgganagcucagncggnagagcaggggauugaanauccccgunnccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).((((.........)))).....(((((..]....)))))))))))).... E. coli 70S-RNAP expressome complex in uncoupled state 1; Phe-NH-tRNA(Phe) A-site 6ztp AW 77 3.0 RF00005 URS00001BBAFC_562 32820062 0030533 0006412 562 cgcggggnggagcagccuggnagcucgucgggnucauaacccgaagaucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... E. coli 70S-RNAP expressome complex in uncoupled state 6; tRNA(fmet) P-site 6ztp AX 76 3.0 RF00005 URS00005AA258_562 32820062 0030533 0006412 562 gcccgganagcucagncggnagagcaggggauugaanauccccgunnccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).((((.........)))).....(((((..]....)))))))))))).... E. coli 70S-RNAP expressome complex in uncoupled state 6; Phe-NH-tRNA(Phe) A-site 6zu1 AW 77 3.0 RF00005 URS00001BBAFC_562 32820062 0030533 0006412 562 cgcggggnggagcagccuggnagcucgucgggnucauaacccgaagaucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... E. coli 70S-RNAP expressome complex in uncoupled state 2; tRNA(fmet) P-site 6zu1 AX 76 3.0 RF00005 URS00005AA258_562 32820062 0030533 0006412 562 gcccgganagcucagncggnagagcaggggauugaanauccccgunnccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).((((.........)))).....(((((..]....)))))))))))).... E. coli 70S-RNAP expressome complex in uncoupled state 2; Phe-NH-tRNA(Phe) A-site 6zu9 1 75 6.2 RF00005 URS00002CB170_559292 33289941 0030533 0006412 559292 agcgccgunncgcagnggaagcgcncagggcucaunacccugaunnnnucggaucgnaaccgngcggcgcuacca <<<<<<<..<<<<.......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((....[..)))).(((((.......))))).....(((((..]....)))))))))))).... Structure of a yeast ABCE1-bound 48S initiation complex; tRNA 6zvh x 75 2.9 RF00005 URS0000E60BA3_9606 32744497 0030533 0006412 9606 uccgauauagcguaacggcuaucacaucacgcuuucaccguggagaccgggguucgacuccccguaucggagcca <<<<<<<..<.<..........>.>.<<<<<.......>>>>>....<<<<<.......>>>>>>>>>>>>.... (((((((..(.(.....[....).).(((((.......)))).)...(((((..]....)))))))))))).... EDF1-ribosome complex; E-site tRNA 6zvi d 76 3.0 RF00005 URS00008FED3A_4932 32744497 0030533 0006412 4932 gcccggauagcucagucgguagagcaggggauuaggaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... ..(((((..((((........))))..((((.......))))......((.((.......)).)))))))...... Mbf1-ribosome complex; A/P-site tRNA 6zvi e 77 3.0 RF00005 URS000041AF00_4932 32744497 0030533 0006412 4932 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).((((.........))).)....(((((..]....)))))))))))..... Mbf1-ribosome complex; P/E-site tRNA 6zym 2 27 3.4 RF00004 URS00003EE995_9606 33007253 0045131 0000348 0005686 9606 uggcuaagaucaaguguaguaucuguu ........................... ........................... Human C Complex Spliceosome - High-resolution CORE; U2 snRNA 6zym 5 74 3.4 RF00020 URS0000118C49_9606 33007253 0000244,0000353 0005682,0046540 9606 cucugguuucucuucagaucgcauaaaucuuucgccuuuuacuaaagauuuccguggagaggaacaacucugag <<<...<<<<<<<<<<........<<<<<<<<...........>>>>>>>>...>>>>>>>>>>.......>>> (((....(((((((((....(...((((((((.(.......).)))))))).).)))))))))........))) Human C Complex Spliceosome - High-resolution CORE; U5 snRNA 6zym 6 79 3.4 RF00026 URS00007199F9_9606 33007253 0030621 0000244,0000353 0005688,0046540 9606 gugcucgcuucggcagcacauauacuaaaauuggaacgauacagagaagauuagcauggccccugcgcaaggaugacac <<<<<.<<....>>>>>>>.....................................<<...<<<.....>>>....>>. (((((.((....))))))).....................................((..((((.....)))..).)). Human C Complex Spliceosome - High-resolution CORE; U6 snRNA 7a09 f 75 3.5 RF00005 URS00021ED8FE_9606 33289941 0030533 0006412 9606 agcagaguagcgcagcggaagcgugcugggcccauaacccagaggucgauggaucgaaaccauccucugcuacca .<<<<<<..<<<<.......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((....[..)))).(.(((.......))).).....(((((..]....)))))))))))..... Structure of a human ABCE1-bound 43S pre-initiation complex - State III; tRNA 7a5f 24 73 4.4 RF00005 URS00021ED9B1_9606 33243891 0030533 0006412 9606 guuaauguagcuuaaauuaucaaagcaaggcacugaaaaugccuagaugagccucacagcuccauuaacacca <<<<<<<.................<................>....................>>>>>>>.... (((((((.........................................(..........)..))))))).... Structure of the stalled human mitoribosome with P- and E-site mt-tRNAs; mt-tRNA 7a5f C 73 4.4 RF00005 URS00021ED9B1_9606 33243891 0030533 0006412 9606 guuaauguagcuuaaauuaucaaagcaaggcacugaaaaugccuagaugagccucacagcuccauuaacacca <<<<<<<.................<................>....................>>>>>>>.... (((((((.........................................(..........)..))))))).... Structure of the stalled human mitoribosome with P- and E-site mt-tRNAs; mt-tRNA 7a5g 24 73 4.33 RF00005 URS00021ED9B1_9606 33243891 0030533 0006412 9606 guuaauguagcuuaaauuaucaaagcaaggcacugaaaaugccuagaugagccucacagcuccauuaacacca <<<<<<<.................<................>....................>>>>>>>.... (((((((.........................................(..........)..))))))).... Structure of the elongating human mitoribosome bound to mtEF-Tu.GMPPCP and A/T mt-tRNA; P tRNA 7a5g C 73 4.33 RF00005 URS00021ED9B1_9606 33243891 0030533 0006412 9606 guuaauguagcuuaaauuaucaaagcaaggcacugaaaaugccuagaugagccucacagcuccauuaacacca <<<<<<<.................<................>....................>>>>>>>.... (((((((.........................................(..........)..))))))).... Structure of the elongating human mitoribosome bound to mtEF-Tu.GMPPCP and A/T mt-tRNA; P tRNA 7a5h 24 73 3.3 RF00005 URS00021ED9B1_9606 33243891 0030533 0006412 9606 guuaauguagcuuaaauuaucaaagcaaggcacugaaaaugccuagaugagccucacagcuccauuaacacca <<<<<<<.........................................<..........>..>>>>>>>.... (((((((.......................................................))))))).... Structure of the split human mitoribosomal large subunit with rescue factors mtRF-R and MTRES1; mt-tRNA 7a5i 99 73 3.7 RF00005 URS00021ED9B1_9606 33243891 0030533 0006412 9606 guuaauguagcuuaaauuaucaaagcaaggcacugaaaaugccuagaugagccucacagcuccauuaacacca <<<<<<<.................<<<............>>>....................>>>>>>>.... (((((((...................(............)........(..........)..))))))).... Structure of the human mitoribosome with A- P-and E-site mt-tRNAs; mt-tRNA 7a5i 94 73 3.7 RF00005 URS00021ED9B1_9606 33243891 0030533 0006412 9606 guuaauguagcuuaaauuaucaaagcaaggcacugaaaaugccuagaugagccucacagcuccauuaacacca <<<<<<<.................<................>....................>>>>>>>.... (((((((.........................................(..........)..))))))).... Structure of the human mitoribosome with A- P-and E-site mt-tRNAs; mt-tRNA 7a5i X 73 3.7 RF00005 URS00021ED9B1_9606 33243891 0030533 0006412 9606 guuaauguagcuuaaauuaucaaagcaaggcacugaaaaugccuagaugagccucacagcuccauuaacacca <<<<<<<.................<................>....................>>>>>>>.... (((((((.........................................(..........)..))))))).... Structure of the human mitoribosome with A- P-and E-site mt-tRNAs; mt-tRNA 7a5j G 73 3.1 RF00005 URS00021ED9B1_9606 33243891 0030533 0006412 9606 guuaauguagcuuaaauuaucaaagcaaggcacugaaaaugccuagaugagccucacagcuccauuaacacca <<<<<<<.................<.<............>.>......<..........>..>>>>>>>.... (((((((.........................................(..........)..))))))).... Structure of the split human mitoribosomal large subunit with P-and E-site mt-tRNAs; mt-tRNA 7a5j x 73 3.1 RF00005 URS00021ED9B1_9606 33243891 0030533 0006412 9606 guuaauguagcuuaaauuaucaaagcaaggcacugaaaaugccuagaugagccucacagcuccauuaacacca <<<<<<<.................<.<............>.>......<..........>..>>>>>>>.... (((((((.........................................(..........)..))))))).... Structure of the split human mitoribosomal large subunit with P-and E-site mt-tRNAs; mt-tRNA 7a5k 24 73 3.7 RF00005 URS00021ED9B1_9606 33243891 0030533 0006412 9606 guuaauguagcuuaaauuaucaaagcaaggcacugaaaaugccuagaugagccucacagcuccauuaacacca <<<<<<<...................<............>........<..........>..>>>>>>>.... (((((((.........................................(..........)..))))))).... Structure of the human mitoribosome in the post translocation state bound to mtEF-G1; mt-tRNA 7a5k FE 73 3.7 RF00005 URS00021ED9B1_9606 33243891 0030533 0006412 9606 guuaauguagcuuaaauuaucaaagcaaggcacugaaaaugccuagaugagccucacagcuccauuaacacca <<<<<<<...................<............>........<..........>..>>>>>>>.... (((((((.........................................(..........)..))))))).... Structure of the human mitoribosome in the post translocation state bound to mtEF-G1; mt-tRNA 7a5p 2 155 5.0 RF00004 URS00021ED9AF_9606 33007253 0045131 0000348 0005686 9606 cgcuucucggccuuucuuaucaguuuaauaucugauacguccucuauccgaggacaauauauuaaauggauuuuuggagcagggagauggaauaggagcuugcuccguccacuccacgcaucgaccugguauugcaguaccuccaggaacggugc ........................<<<<<<<........<<<<<.....>>>>>....>>>>>>>..................<<<.<<<<...<<<<....>>>>.>>>>>>>...<<<<<<.<<<<<.............>>>>>..>>>>>> .......................((((((((.......((((((.....))))))...)))))))).................(((.((((...((((....)))).)))))))....(((((.(((((.............)))))..))))). Human C Complex Spliceosome - Medium-resolution PERIPHERY; U2 snRNA 7a5p 5 40 5.0 RF00020 URS0000118C49_9606 33007253 0000244,0000353 0005682,0046540 9606 aucuuaacccaauuuuuugagccuugccuuggcaaggcua ...................<<<<<<<<....>>>>>>>>. ...................((((((((....)))))))). Human C Complex Spliceosome - Medium-resolution PERIPHERY; U5 snRNA 7a5p 6 16 5.0 RF00026 URS000035C796_9606 33007253 0030621 0000244,0000353 0005688,0046540 9606 gcaaauucgugaagcg ................ ................ Human C Complex Spliceosome - Medium-resolution PERIPHERY; U6 snRNA 7aav 2 10 4.2 RF00004 URS00003EE995_9606 33243851 0045131 0000348 0005686 9606 ggcuaagauc .......... .......... Human pre-Bact-2 spliceosome core structure; U2 snRNA 7aav 5 69 4.2 RF00020 URS0000118C49_9606 33243851 0000244,0000353 0005682,0046540 9606 ugguuucucuucagaucgcauaaaucuuucgccuuuuacuaaagauuuccguggagaggaacaacucug ...<<<<<<<<<<........<<<<<<<<.<.......>.>>>>>>>>...>>>>>>>>>>........ ...(((((..(((...((...((((((((.(.......).)))))))).)))))..)))))........ Human pre-Bact-2 spliceosome core structure; U5 snRNA 7aav 6 73 4.2 RF00026 URS000035C796_9606 33243851 0030621 0000244,0000353 0005688,0046540 9606 gugcucgcuucggcagcacauauacuaaaauuggaacgauacagagaagauuagcauccccugcgcaaggaug <<<<<.<<....>>>>>>>........................................<<<.....>>>... (((((.((....)))))))........................................(((.....)))... Human pre-Bact-2 spliceosome core structure; U6 snRNA 7abf 5 58 3.9 RF00020 URS0000118C49_9606 33243851 0000244,0000353 0005682,0046540 9606 uuucucuucagaucgcauaaaucuuucgccuuuuacuaaagauuuccguggagaggaa <<<<<<<<<<........<<<<<<<<...........>>>>>>>>...>>>>>>>>>> .((((..(((...(....((((((((.(.......).))))))))..))))..)))). Human pre-Bact-1 spliceosome core structure; U5 small nuclear RNA 7abf 6 65 3.9 RF00026 URS000035C796_9606 33243851 0030621 0000244,0000353 0005688,0046540 9606 gugcucgcuucggcagcacauauacuaaaauuggaacgauacagagggccccugcgcaaggauga <<<<<.<<....>>>>>>>.............................<.<<<.....>>>..>. (((((.((....))))))).............................(.(((.....)))..). Human pre-Bact-1 spliceosome core structure; U6 small nuclear RNA 7abg 5 114 7.8 RF00020 URS0000118C49_9606 33243851 0000244,0000353 0005682,0046540 9606 acucugguuucucuucagaucgcauaaaucuuucgccuuuuacuaaagauuuccguggagaggaacaacucugagucuuaacccaauuuuuugagccuugccuuggcaaggcua .<<<...<<<<<<<<<<........<<<<<<<<.<.......>.>>>>>>>>...>>>>>>>>>>.......>>>..................<<<<<<<<....>>>>>>>>. .(((....(.((..(((...((...((((((((.(.......).)))))))).)))))..)).)........)))..................((((((((....)))))))). Human pre-Bact-1 spliceosome; U5 snRNA 7abg 2 145 7.8 RF00004 URS00003EE995_9606 33243851 0045131 0000348 0005686 9606 cgcuucucggccuuguaguaucuguucaucaguuuaauaucugaguccucgaggacaggauuuuuggagcagggagauggaauaggagcuugcuccguccacuccacgcaucgaccugguauugcaguaccuccaggaacggugc ............................<.<<........>>>.<<<<<..>>>>>................<<<<.<<<<...<<<<....>>>>.>>>>>>>>..<<<<<<.<<<<<.............>>>>>..>>>>>> ..............................(..........)..(((((())))))................(((..(((....((((....))))..))).)))..(((.((..((((.............))))...)).))) Human pre-Bact-1 spliceosome; U2 snRNA 7abg 6 78 7.8 RF00026 URS000035C796_9606 33243851 0030621 0000244,0000353 0005688,0046540 9606 gugcucgcuucggcagcacauauacuaaaauuggaacgauacagagggccccugcgcaaggaugaaauucgugaagcg <<<<<.<<....>>>>>>>.............................<.<<<.....>>>..>.............. (((((.((....))))))).............................(.(((.....)))..).............. Human pre-Bact-1 spliceosome; U6 snRNA 7abh 2 37 4.5 RF00004 URS00003EE995_9606 33243851 0045131 0000348 0005686 9606 aaguguaguaucuguucuuaucaguuuaauaucugau ...................<<<<<........>>>>> ...................(((((........))))) Human pre-Bact-2 spliceosome (SF3b/U2 snRNP portion); U2 snRNA 7abi 6 91 8.0 RF00026 URS000035C796_9606 33243851 0030621 0000244,0000353 0005688,0046540 9606 gugcucgcuucggcagcacauauacuaaaauuggaacgauacagagaagauuagcauccccugcgcaaggaugacgcaaauucgugaagcg <<<<<.<<<..>>>>>>>>........................................<<<.....>>>..................... (((((.((....))))))).....................................(..(((.....)))...)................. Human pre-Bact-2 spliceosome; U6 snRNA 7abi 2 164 8.0 RF00004 URS00003EE995_9606 33243851 0045131 0000348 0005686 9606 cgcuucucggccuuuuggcuaagaucaaguguaguaucuguucuuaucaguuuaauaucugauguccucgaggacaggauuuuuggagcagggagauggaauaggagcuugcuccguccacuccacgcaucgaccugguauugcaguaccuccaggaacggugc ..............................................<<<<........>>>>.<<<<<..>>>>>................<<<<.<<<<...<<<<....>>>>.>>>>>>>>..<<<<<<.<<<<<.............>>>>>..>>>>>> ..............................................((((........)))).(((((())))))................(((..(((....((((....))))..))).)))..(((.((..((((.............))))...)).))) Human pre-Bact-2 spliceosome; U2 snRNA 7abi 5 114 8.0 RF00020 URS0000118C49_9606 33243851 0000244,0000353 0005682,0046540 9606 acucugguuucucuucagaucgcauaaaucuuucgccuuuuacuaaagauuuccguggagaggaacaacucugagucuuaacccaauuuuuugagccuugccuuggcaaggcua .<<<...<<<<<<.<<<........<<<<<<<<...........>>>>>>>>...>>>.>>>>>>.......>>>..................<<<<<<<<....>>>>>>>>. .(((...(((((...((...((...((((((((...........)))))))).))))...))))).......)))..................((((((((....)))))))). Human pre-Bact-2 spliceosome; U5 snRNA 7abz 4 363 3.21 RF00023 URS000037602E_83333 34389707 0006401 83333 ggggcugauucuggauucgacgggauuugcgaaacccaaggugcaugccgaggggcgguuggccucguaaaaagccgcaaaaaauagucgcaaacgacgaaaacuacgcuuuagcagcuuaauaaccugcuuagagcccucucucccuagccuccgcucuuaggacggggaucaagagaggucaaacccaaaagagaucgcguggaagcccugccugggguugaagcguuaaaacuuaaucaggcuaguuuguuaguggcguguccguccgcagcuggcaagcgaauguaaagacugacuaagcauguaguaccgaggauguaggaauuucggacgcgggnucaacucccgccagcuccacca <<<<<<<................<<<.<...........<<..........((..<<<<....))........>>>>.............................<.<<......................>>.>.....<...<<<..<<<...((...>>>..>>>.......>.................)).................<<<.........................>>>......<<...<...<<...(..(.>>....>..>>.............)..)...............>>...........>>>.>.....<<<<.........>>>>>>>>>>>.... ((((.((..............(..............(...(...........[...((.....]..........))..............................(..(......................)..).........((...((........[.))...).)........................]......(............[...........)...............]......(.(...(........[....[.....)..)..)..........]...]................)...)............)....((((.........)))))).)))).... Structure of pre-accomodated trans-translation complex on E. coli stalled ribosome.; transfer-messenger RNA (tmRNA) 7abz 7 76 3.21 RF00005 URS00005AA258_83333 34389707 0030533 0006412 83333 gcccgganagcucagucgguagagcaggggauugaanauccccgunnccuuggnucgauuccgaguccgggcacca <<<<.<...<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>.>.>>>>.... .....((..((((.....[..)))).((.(.........).)).....(((((..]....)))))))......... Structure of pre-accomodated trans-translation complex on E. coli stalled ribosome.; tRNA-Phe 7ac7 4 363 3.08 RF00023 URS000037602E_562 34389707 0006401 562 ggggcugauucuggauucgacgggauuugcgaaacccaaggugcaugccgaggggcgguuggccucguaaaaagccgcaaaaaauagucgcaaacgacgaaaacuacgcuuuagcagcuuaauaaccugcuuagagcccucucucccuagccuccgcucuuaggacggggaucaagagaggucaaacccaaaagagaucgcguggaagcccugccugggguugaagcguuaaaacuuaaucaggcuaguuuguuaguggcguguccguccgcagcuggcaagcgaauguaaagacugacuaagcauguaguaccgaggauguaggaauuucggacgcgggnucaacucccgccagcuccacca <<<<<<<.............<<<<<<<............<<...<......((...<<<....))........>>>............<<.......>>.......<.<<...<.............>....>>.>....<...<<<...<<..........>>...>>>.......>....................................<<<.......................>>>.....<<<.......<<<...(....>>>.......>>>..............)........>......>>...........>>>>>>>...<<<<<.......>>>>>>>>>>>>.... ((((((.......[......(((.(((.........(..((.........[.[...(((....]]........)))............(((....).)).......(..(......................)..).........((...((..........))...))................................(............[...........)...............]......(.(............[....[........)..)..........]...]...............))...).......))).)))...(((((..]....))))).)))))).... Structure of accomodated trans-translation complex on E. Coli stalled ribosome.; transfer-messenger RNA (tmRNA) 7ac7 7 76 3.08 RF00005 URS00005AA258_562 34389707 0030533 0006412 562 gcccgganagcucagncggnagagcaggggauugaanauccccgunnccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>><<<<<<<.....>>>>>>.>...<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).((.(.........).)).....(((((..]....)))))))))))).... Structure of accomodated trans-translation complex on E. Coli stalled ribosome.; tRNA-Phe 7acj 4 363 3.2 RF00023 URS000037602E_469008 34389707 0006401 469008 ggggcugauucuggauucgacgggauuugcgaaacccaaggugcaugccgaggggcgguuggccucguaaaaagccgcaaaaaauagucgcaaacgacgaaaacuacgcuuuagcagcuuaauaaccugcuuagagcccucucucccuagccuccgcucuuaggacggggaucaagagaggucaaacccaaaagagaucgcguggaagcccugccugggguugaagcguuaaaacuuaaucaggcuaguuuguuaguggcguguccguccgcagcuggcaagcgaauguaaagacugacuaagcauguaguaccgaggauguaggaauuucggacgcgggnucaacucccgccagcuccacca <<<<<<<..............<<<.<<<.......<<..<<...<<...(.....<<<<......).......>>>>..............................<<<...<<.............>>..>..>>.<<<<<<<<<<...<<....(...>>...>>>>....>>>>>>..............).....<<.....<<<...((...>>>.....>>..............))......<<...........((.............>>................))......>>......>>..>>.....>>.>>>>......<<<<.......>>>>.>>>>>>>.... (((((((......[........(.(((........((..((...(....[[...((((......]]........))))...............................(...((.............))..).....(((((((((....(...[.[....)....)))....)))))).............]...]..((......((...[....))......))...............]......((....(.(............)).....)).........................)......))..))......).)))..........(..]....)....))))))).... Structure of translocated trans-translation complex on E. coli stalled ribosome.; transfer-messanger RNA (tmRNA) 7acr 4 363 3.44 RF00023 URS000037602E_562 34389707 0006401 562 ggggcugauucuggauucgacgggauuugcgaaacccaaggugcaugccgaggggcgguuggccucguaaaaagccgcaaaaaauagucgcaaacgacgaaaacuacgcuuuagcagcuuaauaaccugcuuagagcccucucucccuagccuccgcucuuaggacggggaucaagagaggucaaacccaaaagagaucgcguggaagcccugccugggguugaagcguuaaaacuuaaucaggcuaguuuguuaguggcguguccguccgcagcuggcaagcgaauguaaagacugacuaagcauguaguaccgaggauguaggaauuucggacgcgggnucaacucccgccagcuccacca <<<<<<<..............<<................<<...<....((...<<<<<.....)).......>>>>>.............................<.<<..<...............>..>>..>.<<<<<.<<<<..<<....((....>>..>>>>.....>>>>>..............))....<<.....<<<...((...>>>.....>>..............))......<<...........((.............>>................)).......>......>>...............>>....<<<<<.......>>>>>>>>>>>>.... (((((((...............(...(.............(........[....((((.......]........)))).............................(........(........)...........)(((((.(((....(.....[.[..)....))).....))))).............]].....((......((.....[..))......)).............]........((......(.....[......)......))................]...............)............)...).....(.(((.......))).)))))))).... Structure of post-translocated trans-translation complex on E. coli stalled ribosome.; transfer-messenger RNA (tmRNA) 7ajt D4 230 4.6 RF01846 URS0000B21E09_559292 33326748 0006396 0005730 559292 gucgacguacuucauaggaucauuucuauaggaaucgucacucuuugacucuucaaaagagccacugaauccaacuugguugaugagucccauaaccuuuguacccgugagaaauagcuugguccgcaauccuuagcgguucggccaucuauaauuuugaauaaaaauuuugccguugcuauggcgcgaugaucuacccauggguggguacaaauggcagucugacaagu .........................................................................<<<<<.................<<<<<<<<<<.<.......<<...<<<.<<<.<<<<......>>>>>>>>>>..>>.<<<<<......>>.>>>..<<<<......>>>>........>.<<<....>>>.>>>>>>>>.>>........>>>>> ..........................................................................(((..................((((((((((((...(...(((..(((.(((.((.((.....)))))))))).))).((((((....))).)))..(((((....))))).)......).((((..))))))))))))).)).........))). Cryo-EM structure of the 90S-exosome super-complex (state Pre-A1-exosome); U3 snoRNA 7aju D4 223 3.8 RF01846 URS0000B21E09_559292 33326748 0006396 0005730 559292 gucgacguacuucaaggaucaucuauaggaaucgucacucuuugacucuucccacugaauccaacuugguugaugagucccauaaccuuuguaccccagagugagaaauagcuugguccgcaauccuuagcgguucggccaucuauaauuuugaauaaaaauuuugccguugcuauggcgcgaugaucacccauggguggguacaaauggcagucugacaagu ...............................................................<<<<<.................<<<<<<<<<<<....<........<<..<<<.<<<.<<<<......>>>>>>>>>>.>>..<<<<<<....>>>.>>>..<<<<<....>>>>>........><<<<..>>>>>>>>>>>>>.>>........>>>>> ...............................................................(((((......(..........(((((((((((....(...(....((..(((.(((.((((......)))))))))).))...(((((....))).))...(((((....))))).)......)((((..))))))))))))).))....)...))))) Cryo-EM structure of the 90S-exosome super-complex (state Post-A1-exosome); U3 snoRNA 7aqc P 69 2.99 RF00005 URS00002F180C_224308 33259811 0030533 0006412 224308 ggggccuuagcucaggggagagcgccugcucgcaggaggucagcgguucgaucccgcuaggcuccacca <<<<<<<..<<<<......>>>>.<<<<<..>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((...[..)))).(((((..))))).....(((((..]....)))))))))))).... Structure of the bacterial RQC complex (Decoding State); Ala-tRNA (P-site) 7aqc T 76 2.99 RF00005 URS00002F180C_224308 33259811 0030533 0006412 224308 ggggccuuagcucagcugggagagcgccugcuuugcacgcaggaggucagcgguucgaucccgcuaggcuccacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (.(((((..((((.....[..)))).(((((.......))))).....((((...].....))))))))).).... Structure of the bacterial RQC complex (Decoding State); Ala-tRNA (P-site) 7aqd T 76 3.1 RF00005 URS00002F180C_224308 33259811 0030533 0006412 224308 ggggccuuagcucagcugggagagcgccugcuuugcacgcaggaggucagcgguucgaucccgcuaggcuccacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).(((((.......))))).....((((...].....))))))))))).... Structure of the bacterial RQC complex (Translocating State); Ala-tRNA (A/P-site) 7as8 2 73 2.9 RF00005 URS00002F180C_224308 33259810 0030533 0006412 224308 ggggccuuagcucaggggagagcgccugcuuugcacgcaggaggcagcgguucgaucccgcuaggcuccacca <<<<<<<..<<<<......>>>>.<<<<<.......>>>>>....<<<<<.......>>>>>>>>>>>>.... ((.(((...((((...[..))))..((((.......)))).....(((((..]....))))).))).)).... Bacillus subtilis ribosome quality control complex state B. Ribosomal 50S subunit with P-tRNA, RqcH, and RqcP/YabO; tRNA-Ala-1-1 7as9 2 75 3.5 RF00005 URS00002F180C_224308 33259810 0030533 0006412 224308 ggggccuuagcucagcgggagagcgccugcuuugcacgcaggaggucagcgguucgaucccgcuaggcuccacca <<<<<<<..<<<<.......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((....[..)))).(((((.......))))).....(((((..]....)))))))))))).... Bacillus subtilis ribosome-associated quality control complex state A. Ribosomal 50S subunit with peptidyl tRNA in the A/P position and RqcH.; tRNA-Ala-1-1 7asa 2 34 3.5 RF00005 URS00002F180C_224308 33259810 0030533 0006412 224308 uagcucagagagcgccugcuuugcacgcaggagg ..<<<<...>>>>.<<<<<.......>>>>>... ..((((...))))..((((.......)))).... Bacillus subtilis ribosome-associated quality control complex state B, multibody refinement focussed on RqcH. Ribosomal 50S subunit with P-tRNA, RqcH, and RqcP/YabO; tRNA-Ala-1-1 7ase 1 75 3.33 RF00005 URS00021ED904_5693 33357443 0030533 0006412 5693 agcaccguggcgcaguggaagcgcgaugggcucauaacccauaggacguuggaucgaaaccaaccggugcuacca <<<<<<<..<<<<.......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((....[..)))).(((((.......))))).....(((((..]....)))))))))))).... 43S preinitiation complex from Trypanosoma cruzi with the kDDX60 helicase; initiator tRNA-Met 7azo ASIA 76 3.3 RF00005 URS00005AA258_562 36827973 0030533 0006412 562 gcccgganagcucagucgguagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>......<<<<.......>>>.>>>>>>>>.... ((...(...(..(.....[..)..).((((.........))))........((..]....))....)...)).... 70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977; Phe-tRNA 7azo PSIA 76 3.3 RF00005 URS00005AA258_562 36827973 0030533 0006412 562 gcccgganagcucagncgguagagcaggggauugaanauccccgunnccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).((((.........)))).....(((((..]....)))))))))))).... 70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977; Phe-tRNA 7azo ESIA 76 3.3 RF00005 URS00005AA258_562 36827973 0030533 0006412 562 gcccggauagcucagucgguagagcaggggauugaanauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<..........>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((.(........).)).((((.........)))).....(((...........)))))))))).... 70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977; Phe-tRNA 7azo TRNA 73 3.3 RF00005 URS00005AA258_562 36827973 0030533 0006412 562 gcccgganagcucagncggnagagcaggggauugaanauccccguguccuuggnucgauuccgaguccgggca <<<<<<...<<............>>..<<<<<.....>>>>>......<<<<<.......>>>>>.>>>>>>. ((((.((..(..(........)..)(.(.(.........).)..).....(((.......)))..)).)))). 70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977; Phe-tRNA 7azo ASIB 76 3.3 RF00005 URS00005AA258_562 36827973 0030533 0006412 562 gcccggauagcucagucgguagagcaggggauugaanauccccguguccuuggnucgauuccgaguccgggcacca .<<<<<.....<<........>>...<<<<<<.....>>>>>>.....<<<<<.......>>>>>.>>>>>..... (..........((........).)..((((.........)))).....(..((.......))..)......).... 70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977; Phe-tRNA 7azo PSIB 76 3.3 RF00005 URS00005AA258_562 36827973 0030533 0006412 562 gcccgganagcucagncgguagagcaggggauugaanauccccgunnccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).((((.........)))).....(((((..]....)))))))))))).... 70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977; Phe-tRNA 7azo ESIB 76 3.3 RF00005 URS00005AA258_562 36827973 0030533 0006412 562 gcccggauagcucagucgguagagcaggggauugaanauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((............)).(((((.......))))).....(.((.........)).)))))))).... 70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977; Phe-tRNA 7azs ASIA 76 3.1 RF00005 URS00005AA258_562 36827973 0030533 0006412 562 gcccgganagcucagucgguagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>......<<<<.......>>>>.>>>>>>>.... ((...(...(..(.....[..)..).((((.........)))).....((.((..]....)).)).)...)).... 70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569; Phe-tRNA 7azs PSIA 76 3.1 RF00005 URS00005AA258_562 36827973 0030533 0006412 562 gcccgganagcucagucgguagagcaggggauugaanauccccgunnccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).((((.........)))).....(((((..]....)))))))))))).... 70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569; Phe-tRNA 7azs ESIA 76 3.1 RF00005 URS00005AA258_562 36827973 0030533 0006412 562 gcccggauagcucagucgguagagcaggggauugaanauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<..........>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((.(........).)).((((.........)))).....(((...........)))))))))).... 70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569; Phe-tRNA 7azs TRNA 73 3.1 RF00005 URS00005AA258_562 36827973 0030533 0006412 562 gcccgganagcucagucgguagagcaggggauugaanauccccguguccuuggnucgauuccgaguccgggca <<<<<<...<<............>>..<<<<<.....>>>>>......<<<<.........>>>>.>>>>>>. ((((.((..(..(........)..)(.(((.........)))..)...(.(((.......))).))).)))). 70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569; Phe-tRNA 7azs ASIB 76 3.1 RF00005 URS00005AA258_562 36827973 0030533 0006412 562 gcccggauagcucagucgguagagcaggggauugaanauccccguguccuuggnucgauuccgaguccgggcacca .<<<<<.....<<........>>...<<<<<<.....>>>>>>.....<<<<<.......>>>>>.>>>>>..... (...(......((........).)..((((.........))))........((.......)).....)...).... 70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569; Phe-tRNA 7azs PSIB 76 3.1 RF00005 URS00005AA258_562 36827973 0030533 0006412 562 gcccgganagcucagucgguagagcaggggauugaanauccccgunnccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).((((.........)))).....(((((..]....)))))))))))).... 70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569; Phe-tRNA 7azs ESIB 76 3.1 RF00005 URS00005AA258_562 36827973 0030533 0006412 562 gcccggauagcucagucgguagagcaggggauugaanauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((............)).(((((.......))))).....(.((.........)).)))))))).... 70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569; Phe-tRNA 7b0y a 164 3.6 RF00003 URS000032B6B6_9606 33446560 0030627 0000395 0005685 9606 auacuuaccuggcaggggagauaccaugaucacgaaggugguuuucccagggcgaggcuuauccauugcacuccggaugugcugaccccugcgauuuccccaaaugugggaaacucgacugcauaauuugugguagugggggacugcguucgcgcuuuccccug ...........<<<<.<<<<<.<<<<<..........>>>>>>>>>>..<<<...<<<.<<<<<..........>>>>>.>>>...>>>..<<<<<<<<<.......>>>>>>.>>>.>>>>...............<<<<<<..<<<<..>>>>..>>>>>>. ............(((.(((((..((((..........)))).))))).((((...(((.(((((..........))))).)))...))))..(.((((((.......))))))..)..)))................((((((..(((....)))..)))))). Structure of a transcribing RNA polymerase II-U1 snRNP complex; U1 snRNA 7b5k x 77 2.9 RF00005 URS0001A0F008_83333 0030533 0006412 83333 aggcuuauagcucaggugguuagagcgcaccccugauaagggugaggucggugguucaaguccacucaggccuacca <<<<<<...<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>.>>>>>>.... ((((((...((((.....[...)))).(((((.......))))).....(((((..]....))))).)))))).... E. coli 70S containing suppressor tRNA in the A-site stabilized by a Negamycin analogue and P-site tRNA-nascent chain.; P-site Isoleucine tRNA (77-MER) 7b5k z 76 2.9 RF00005 URS000231199E_83333 0030533 0006412 83333 ggggugguggcucagaagggagagcagcggccuucagagccgcgagacggggguucgauuccccuccgcuccacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... ((.(.((..((((.....[..)))).(((((.......)))))......((((..]....)))).)).).)).... E. coli 70S containing suppressor tRNA in the A-site stabilized by a Negamycin analogue and P-site tRNA-nascent chain.; atRNA synthetic Stop tRNA (76-MER) 7b5k 9 76 2.9 RF00005 URS0000B4C48A_83333 0030533 0006412 83333 gggugauuagcucagcugggagagcaccucccuuacaaggagguggucggcgguucgaucccgucaucacccacca <<<<<<<..<<<<........>>>><<<<<<.......>>>>>>....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).(((...........))).....(..((..]....))..)))))))).... E. coli 70S containing suppressor tRNA in the A-site stabilized by a Negamycin analogue and P-site tRNA-nascent chain.; E-site val tRNA (76-MER) 7b7d Sn 75 3.3 RF00005 URS00021ED942_559292 0030533 0006412 559292 agcgccgugacgcaguggaagcgcgcagggcucauaacccugauguccucggaucgaaaccgagcggcgcuacca <<<<<<<...<<<.......>>>..<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((...(((....[..)))..(((((.......))))).....(((((..]....)))))))))))).... Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs; tRNA 7b7d Sm 75 3.3 RF00005 URS00021ED942_559292 0030533 0006412 559292 agcgccgugacgcaguggaagcgcgcagggcucauaacccugauguccucggaucgaaaccgagcggcgcuacca <<<<<<<...<<<.......>>>..<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((...(((....[..)))..(((((.......))))).....(((((..]....)))))))))))).... Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs; tRNA 7b9v 2 196 2.8 RF00004 URS000023C730_4932 33705709 0045131 0000348 0005686 4932 aaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuguaacaagaccucaaugaggcucuuguuacaauacacauuuuuuggcaccuggacgggaagagacuuuuuauaaagugagacgucgcgacccucgcacuggagucguucuugacuuuuacuuuggucgcuugauguuucucuucccguucg ............................................<<<<<<<<<<<<<<...>>>>.>>>>>>>>>>...................<<<<<<<<<<<..<<<<<....>>>>><<<<<<<<<<<<<<........<<<<<<<....>>>>>>.>.....>>>>>>..>>>>>>>>.>>>>>>>>>>> ............................................((((((((((((((...)))).))))))))))....................((((((((((..(((((....)))))((((((((((((((..........(((((....)))))........))))))..)))))))).)))))))))). Yeast C complex spliceosome at 2.8 Angstrom resolution with Prp18/Slu7 bound; U2 snRNA 7b9v 5 178 2.8 RF00020 URS000053F313_4932 33705709 0000244,0000353 0005682,0046540 4932 aagcagcuuuacagaucaauggcggagggaggucaacaucaagaacugugggccuuuuauugccuauagaacuuauaacgaacaugguucuugccuuuuaccagaaccauccggguguugucuccauagaaacagguaaagcuguccguuacugugggcuugccauauuuuuuggaac ..<<<<<<.<<<<<......<<<<<..<<<<<.<<<<<<<.....<<<<<<<<........>>>>>>>>..............<<<<<<<<...........>>>>>>>>...>>>>>>>>>>>>......<<<<......>>>>>>>>>.>>>>>>>>.>>>............... ..(((((((.((((......(((((..(((((.(((((((.....((((((((........)))))))).........((...((((((((.(.......).)))))))).))))))))))))))......((((......))))))))).)))))))).)))............... Yeast C complex spliceosome at 2.8 Angstrom resolution with Prp18/Slu7 bound; U5 snRNA 7b9v 6 102 2.8 RF00026 URS00006184A9_4932 33705709 0030621 0000244,0000353 0005688,0046540 4932 guucgcgaaguaacccuucguggacauuuggucaauuugaaacaauacagagaugaucagcaguuccccugcauaaggaugaaccguuuuacaaagagauuu <<<<<<<<<<.....>>>>>>>>>>.....................................<<<..<<<.....>>>...>>>.................. ((((((((((.....)))))))))).....................................(((.((((.....)))..)))).................. Yeast C complex spliceosome at 2.8 Angstrom resolution with Prp18/Slu7 bound; U6 snRNA 7bg9 B 256 3.8 RF00024 URS00004A7003_9606 33883742 2.7.7.49 0003720,0003964,0000332,0005515,0044877,0070182,0071987 0007004,0071456,2000773 0000333,0000781,0005737,0015030,0005697,0090661 9606 gggugguggccauuuuuugucuaacccuaacugagaagggcguaggcgccgugcuuuugcuccccgcgcgcuguuuuucucgcugacuuucagcgggcggaaaagccucggccugccgccuuccgagcaaacaaaaaaugucagcugcuggcccguucgccccgaaccccgccgaggccgcggucggcccggggcuucuccggaggcacccacugccaccgcgaagaguugggcucugucagccgcgggucucucg .<<....<<<<<.........................<<<<<<<<<<.....<<<<<<.....<<<<.<<<<<........(((((((((>>>>>.>>>>>>>>>>....>>>>>.>>>>>..............))).))))))...>>>>>......>>.<<<..<<<<<...<<..<<<<<.<<<..<<<<<<........>>>.>>>...>>>>>>>>..<<<<.....>>>>.....>>>>>>>....>>> .......((((.........................(((((((((((......(((((.....((((.(((((........[[[[[[[[[)))).)))))))))).....))))).)))))).............]]].]]]]]]....)))).........((((.(((((......((((((.(((..((((((........))).)))...))))))))).((((.....)))).......)))))..).))) The catalytic core lobe of human telomerase in complex with a telomeric DNA substrate; RNA (256-MER) 7bgb B 92 3.4 RF00024 URS00004A7003_9606 33883742 2.7.7.49 0003720,0003964,0000332,0005515,0044877,0070182,0071987 0007004,0071456,2000773 0000333,0000781,0005737,0015030,0005697,0090661 9606 ccugcggcggccgcaggaagaggaacggagcgaguccccgcggcgcgauucccugagcugugggacgugcacccaggacucggcucacacau <<<<<<<<.>>>>>>>>..........<<<<<<<<<<.....<<<<<...<<<........>>>.>>>>>.....>>>>>>.>>>>...... ((((((((.))))))))..........((((((((((..(..(((((...(((........))).))))).)...)))))).))))...... The H/ACA RNP lobe of human telomerase; RNA (92-MER) 7c79 A 331 2.5 RF00030 URS0001A24B54_559292 32586950 3.1.-.- 0000171 0006364 0000172 559292 aauccaugaccaaagaaucgucacaaaucgaagcuuacaaaauggaguaaaauuuuguuuacucaguaauaugcuuuggguugaaagucucccaccaauucguaugcggaaaacguaaugagauuuaaaaauaauuguuuaaaucaacucauuaaggaggaugcccuuggguauucugcuucuugaccugguaccucuauugcaggguacugguguuuucuucgguacuggauuccguuuguauggaaucuaaaccauaguuaugacgauugcucuuucccgugcuggaucgaguaacccaauggagcuuacuauucuugguccauggauu <<<<<<<<<<<<<<.<<<<<<<......<<<<<<..........<<<<<<<......>>>>>>>........>>>>>>[.......{.((((.<<<.........<<<.....>>><<<<.<..........................>>>>><<<.<<<<<<<<....>>>>>>>>.>>>......<<<<<<<<<........>>>>>>>>>..........>>>...<<<<<<<<......>>>>>>>>.............>>>>>>><<<<..<<<......>>>..>>>>...]....)))).}...>....>>>>>>.>>>>>>> ((((((((((((((.((((.((......((((((..........(((((((......)))))))........)))))).{.....[..[[[[.(((.(.......(((.....)))((((.(.........................).)))).((.((.((.((....)).)).)).))..)..(((..(((((..........)))))..).).)......)))...((((((((......)))))))).............)).)))).(((..(((......)))..)))...}.....]]]].]...)....)))))).))))))) Cryo-EM structure of yeast Ribonuclease MRP; Ribonuclease MRP RNA subunit NME1 7c7a A 330 2.8 RF00030 URS0001A24B54_559292 32586950 3.1.-.- 0000171 0006364 0000172 559292 aauccaugaccaaagaaucgucacaaaucgaagcuuacaaaauggaguaaaauuuuguuuacucaguaauaugcuuuggguugaaagucucccaccaauucguaugcggaaaacguaaugagauuuaaaaaaauuguuuaaaucaacucauuaaggaggaugcccuuggguauucugcuucuugaccugguaccucuauugcaggguacugguguuuucuucgguacuggauuccguuuguauggaaucuaaaccauaguuaugacgauugcucuuucccgugcuggaucgaguaacccaauggagcuuacuauucuugguccauggauu <<<<<<<<<<<<<<.<<<<<<<......<<<<<<..........<<<<<<<......>>>>>>>........>>>>>>........[.((((.<<<.........<<<.....>>><<<<<..........................>>>>><<<.<<<<<<<<....>>>>>>>>.>>>......<<<<<<<<<........>>>>>>>>>..........>>>...<<<<<<<<......>>>>>>>>.............>>>>>>><<<<..<<<......>>>..>>>>........)))).]...>....>>>>>>.>>>>>>> ((((((((((((((((((((((......(.((((..........(((((.(.......))))))........)))).).{.....[..[[[[.(((.(.......(((.....)))((((((........................)))))).((.((.((.((....)).)).)).))..)..(((..(((((..........)))))..).).)......)))...((((((((......)))))))).............))))))).(((..(((......)))..)))...}.....]]]].]..))....)))))).))))))) Cryo-EM structure of yeast Ribonuclease MRP with substrate ITS1; Ribonuclease MRP RNA subunit NME1 7chd I 75 3.804 RF00005 URS00001BBAFC_562 33116145 0030533 0006412 562 cgcggggnggagcagccuggnagcucgucgggnucauaacccgaagaucgucggnucaaauccggcccccgcaac .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))... AtaT complexed with acetyl-methionyl-tRNAfMet; RNA (77-MER) 7chd J 75 3.804 RF00005 URS00001BBAFC_562 33116145 0030533 0006412 562 cgcggggnggagcagccuggnagcucgucgggnucauaacccgaagaucgucggnucaaauccggcccccgcaac .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))... AtaT complexed with acetyl-methionyl-tRNAfMet; RNA (77-MER) 7cpj 9 77 3.3 RF00005 URS00001DEEBE_562 34906996 0030533 0006412 562 cggugauuggcgcagccugguagcgcacuucguucgggacgaaggggucggagguucgaauccucuaucaccgacca <<<<<<<..<<<<.........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((......[..)))).(((((.......)))))......((((..]....)))).))))))).... ycbZ-stalled 70S ribosome; P/P tRNA 7cpu S6 75 2.82 RF00005 URS0000326EAC_10090 36517592 0030533 0006412 10090 agcagaguggcgcagcggaagcgugcugggcccauaacccagaggucgauggaucgaaaccauccucugcuacca <<<<<<<..<<<<.......>>>>.<<<<<.......>>>>>.....<<<<.........>>>>>>>>>>>.... (((.(((...(((.......)))..((.((.......)).)).....(((.(........))))))).))).... Cryo-EM structure of 80S ribosome from mouse kidney; tRNA 7cpv S6 75 3.03 RF00005 URS0000326EAC_10090 36517592 0030533 0006412 10090 agcagaguggcgcagcggaagcgugcugggcccauaacccagaggucgauggaucgaaaccauccucugcuacca <<<<.<<..<<<<.......>>>>.<<<<<.......>>>>>.....<<<<.........>>>>>>.>>>>.... (((...(..((((.......)))).((.((.......)).)).....(((.(........)))))...))).... Cryo-EM structure of 80S ribosome from mouse testis; Met-tRNA 7d0f A 738 5.0 RF00029 URS00021ED97B_1359 33021674 0000373 1359 cacauccauaacgugcgcccagauaggguguuaagucaaguaguuuaagguacuacucuguaagauaacacagaaaacagccaaccuaaccgaaaagcgaaagcugauacgggaacagagcacgguuggaaagcgaugaguuaccuaaagacaaucggguacgacugagucgcaauguuaaucagauauaagguauaaguuguguuuacugaacgcaaguuucuaauuucgguuaugugucgauagaggaaagugucugaaaccucuaguacaaagaaagguaaguuaugguuguggacuuaucuguuaucaccacauuuguacaaucuguaggagaaccuaugggaacgaaacgaaagcgaugccgagaaucugaauuuaccaagacuuaacacuaacuggggauacccuaaacaagaaugccuaaaggaggaaaaaggcuauagcacuagagcuugaaaaucuugcaaggguacggaguacucguaguagucugagaaggguaacgcccuuuacauggcaaagggguacaguuauuguguacuaaaauuaaaaauugauuagggaggaaaaccucaaaaugaaaccaacaauggcaauuuuagaaagaaucaguaaaauuuuacgaacgaacaauaacagagccguauacuccgagagggguacguacgguucccgaagaggguggugcaaaccagucacaguaaugugaacaaggcgguaccucccucuucacca ..{{..((((((.....<<<<<....<<<<<<<<<<<..<<<<<.......>>>>><<<<<..<<.<<<>>>>>.<<<<.<<<<<....<<<....<<....>>.....>>>............>>>>>....<<...<<<..<<...........>>.....>>>...>.>...>>>>..<<<<<............<<.......>>....[[[...................}}...................................[[.....<.<<<<<<...))))))>>>>>>.>.>>>.>>......]]...........<<<<....>>>>................]]]..........>>>>>.........>>>>>>>>>>>..>>>>>...<<<......<<<....<<<..>>>........<<..............>>.......>>>....>>.>.....<...<<...............<<<.....>>>..............>>...>..<...<<.....<<<..<<....<.......<<.....................>>.....>...>>..>>>............<.....>..........>>..>...<<<<<<....<<<<....>>>>......>>>>>>...<<<..<<.<<<<<..........<<....>>...........>>>>>>>...>>>..... ..<<<.{{.{{{.....(((((....(((((((((((..(((((.......)))))((((...[[.[[[.))))..(((.(((((....(((....((....)).....)))............)))))...((((..(((...(...[[.[[....).....)))...))))..)).)...((((..(..((....(((.......)))...(((..(..((.......(...>>>...)...((.(.....]].]].....).))....((.(....((((((((..<}}}.}})))))))).]]].]]......).)).........((((....)))).......))..)....)))...)))....))))..........)))))))))))..)))))(.((((.....((((....(((..))).........((............))........))))...).))))...((.(.(..............((((.....))).)............).).))...(..(((...(.((.(.(....((.(....((.....................))..).))...).).)).).......(.(..........)).....)))..)...(((((((..((.((....)).))....)))))))..(..(..((.(((((........(.((....)).).........))))).))..)..)..>. cryo-EM structure of a pre-catalytic group II intron RNP; RNA (738-MER) 7d1a A 692 3.8 RF00029 URS00021ED979_1359 33021674 0000373 1359 gugcgcccagauaggguguuaagucaaguaguuuaagguacuacucuguaagauaacacagaaaacagccaaccuaaccgaaaagcgaaagcugauacgggaacagagcacgguuggaaagcgaugaguuaccuaaagacaaucggguacgacugagucgcaauguuaaucagauauaagguauaaguuguguuuacugaacgcaaguuucuaauuucgguuaugugucgauagaggaaagugucugaaaccucuaguacaaagaaagguaaguuaugguuguggacuuaucuguuaucaccacauuuguacaaucuguaggagaaccuaugggaacgaaacgaaagcgaugccgagaaucugaauuuaccaagacuuaacacuaacuggggauacccuaaacaagaaugccuaaaggaggaaaaaggcuauagcacuagagcuugaaaaucuugcaaggguacggaguacucguaguagucugagaaggguaacgcccuuuacauggcaaagggguacaguuauuguguacuaaaauuaaaaauugauuagggaggaaaaccucaaaccaacaauggcaauuuuagacaauaacagagccguauacuccgagagggguacguacgguucccgaagaggguggugcaaaccagucacaguaaugugaacaaggcgguaccucccuacuucac .....<<<<.....<<<<<<<<<<<..<<<<.........>>>><<<<......(((.>>>>.<<<<.<<<<<<...<....<.<<....>>>.....>............>>>>>>...<<<<..<<..<.<...((.......>.>....>>...>>>>..>>>>...<<<<.....<<<<..<<<.......>>>....<<...<<<<.......<<.......>>...............))...........<<<<<<....<<<<<<<<.........>>>>>>>>.))).........>>>>>>......<<<<......>>>>......>>>>.....>>..>>>>.....>>>>..........>>>>>>>>>>>...>>>>..<<<<.....<.......<<<..>>>........<<<<..<....>..>>>>..........>...>>.>>....<<.<<<.............<<<<<.....>>>>>...........>>>..>>.<<<<<<<............................<<.....>>........................>>>>>>>.<<<<<<<<<<<<<<....>>>>>..>>>>>>>>>..<<<.<<<<.<..<<...........<....>............>>...>>>>>..>>>.. .....((.......(((((((((((..((((.........))))((.(......[[[.).)).((((.((((((..........((....))...................))))))...(((((..(....(.......[....)......)..).))))..))))....(.(............................((....(.....(.(.(.........))...(.......]............)....(((.....(..(((((.........)))))..).]]]..........)))....)....((........)).........)......))...........).)...........))))))))))).....))(...((.......(.....(.(..).)........((...((....))...)).........)....))...)...((.(...............(((((.....)))))..............).))...(((((........((.(.....(...((.(....(.....)......)))..).....).).)...)))).).....(((.(((((((....)))))..)).))).....((((((((..(..(....(......(....)........)...)...).)))).)))).. cryo-EM structure of a group II intron RNP complexed with its reverse transcriptase; RNA (692-MER) 7d4i 3A 216 4.0 RF01846 URS000231196A_559292 0006396 0005730 559292 ucgacguacuucaaggaucauuucuauaggaaucgucacucuuugacucuucccaacuugguugaugagucccauaaccuuuguaccccagagugagaaagcuuggccgaauccucgguucggccacuauugccguugcauuuuauggcgcgaugaucuugacccauccuaucuucgaagauaggauggguggguacaaauggcagucugacaagu .......................................................<<<<<.................<<<<<<<<<<<....<...<...<..<<<<<<<<<<...>>>>>>>>>>.>...<<<<..........>>>>.>......>..<..<<<<<<<<<<<<..>>>>>>>>>>>>.>>>>>>>>>>.>>........>>>>> .......................................................(((((......(..........(((((((((((....(...(......(((((((..(...)..))))))).....(((.....().....))).)......)...(..(((((((((((())))))))))))..)))))))))).))....)...))))) Cryo-EM structure of 90S small ribosomal precursors complex with the DEAH-box RNA helicase Dhr1 (State F); U3 snoRNA 7d5s 3A 175 4.6 RF01846 URS0000B21E09_559292 0006396 0005730 559292 gucgacguacuucauaggaucauuucuauaggaaucgucacucuuugacucuucaaaagagccacugaauccaacuugguugaugagucccauaaccuuuguacccagugagaaauugccguugcuauggcgcgaugaucacccauggguggguacaaauggcagucugacaagu .........................................................................<<<<<.................<<<<<<<<<<..<.........<<<<......>>>>.......>.<<<<..>>>>.>>>>>>>>.>>........>>>>> .........................................................................(((((......(..........(((((((((((.(...(.....((((......)))).)......)((((..))))))))))))).))....)...))))) Cryo-EM structure of 90S preribosome with inactive Utp24 (state A2); U3 snoRNA 7d5t 3A 167 6.0 RF01846 URS0000B21E09_559292 0006396 0005730 559292 ucgacguacuucaaggaucauuucuauaggaaucgucacucuuugacucuucccaacuugguugaugagucccauaaccuuuguaccccagagugagaaauugccguugcauuuuauggcgcgaugaucuugacccauggguggguacaaauggcagucugacaagu .......................................................<<<<<.................<<<<<<<<<<<....<...<.....<<<<..........>>>>.>......>..<..<<..>>.>>>>>>>>>>.>>........>>>>> .......................................................(((((......(..........(((((((((((....(...(.....(((.....().....))).)......)...(..(())..)))))))))).))....)...))))) Cryo-EM structure of 90S preribosome with inactive Utp24 (state F1); U3 snoRNA 7d63 3A 175 12.3 RF01846 URS0000B21E09_559292 0006396 0005730 559292 gucgacguacuucauaggaucauuucuauaggaaucgucacucuuugacucuucaaaagagccacugaauccaacuugguugaugagucccauaaccuuuguacccagugagaaauugccguugcuauggcgcgaugaucacccauggguggguacaaauggcagucugacaagu .........................................................................<<<<<.................<<<<<<<<<<..<.........<<<<......>>>>........><<<<..>>>>.>>>>>>>>.>>........>>>>> .........................................................................(((((......(..........(.(.(((((((.(...(.....((((......)))).)......)((((..))))))))))).)..)....)...))))) Cryo-EM structure of 90S preribosome with inactive Utp24 (state C); U3 snoRNA 7d6z 2 65 3.4 RF00005 URS00021ED932_562 33761323 0030533 0006412 562 gggugauagcucaggggagagcaccucccuacaggaggggucggcggcgaucccgucaucaccca .<<<<<..<<<<......>>>>.<<<<<.....>>>>>....<.<<<.....>>>.>.>>>.>>. ..(.....(((........))).(((((.....)))))....(.(((.....))).)......). Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase and trigger factor; E-site tRNA 7d6z 3 70 3.4 RF00005 URS000009EE82_562 33761323 0030533 0006412 562 ggagcggaguucagucgguuagaauaccugccuuccgcaggggucgcgggcgagucccgccguuccgcca <<<<<<<.<<<<.........>>>>.<<<<<.....>>>>>.....<<<<.....>>>>>>>>>>>.... (((.(((.((((.........)))).(((((.....))))).....((((.....))))))).))).... Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase and trigger factor; P-site tRNA 7d6z 4 66 3.4 RF00005 URS000021B2C1_562 33761323 0030533 0006412 562 gggucguagcucaggguagagcaguugacuuuacaauugcgcaggcgaauccugcacgacccacca <<<<<<<.<<<<......>>>>.<<<<......>>>>...<<<<.......>>>>>>>>>>>.... (((((((.((((......)))).((((......))))....((.........)).))))))).... Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase and trigger factor; A-site tRNA 7d80 X 65 4.1 RF00005 URS00021ED932_562 33761323 0030533 0006412 562 gggugauagcucaggggagagcaccucccuacaggaggggucggcggcgaucccgucaucaccca .<<..<..<<.<......>.>>.<<<<<.....>>>>>....<<...........>>.>..>>.. ..(.(.....(........).....((.......))......(.............)..)...). Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigger factor, and methionine aminopeptidase; E-site tRNA 7d80 Z 66 4.1 RF00005 URS000021B2C1_562 33761323 0030533 0006412 562 gggucguagcucaggguagagcaguugacuuuacaauugcgcaggcgaauccugcacgacccacca <<<<<<<.<<<<......>>>>.<<<<......>>>>..................>>>>>>>.... ..((.((.(((........)))...(........).....(.............))).).)..... Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigger factor, and methionine aminopeptidase; A-site tRNA 7d80 y 70 4.1 RF00005 URS000009EE82_562 33761323 0030533 0006412 562 ggagcggaguucagucgguuagaauaccugccuuccgcaggggucgcgggcgagucccgccguuccgcca <<<<<<<.<<<<.........>>>>.<<<<<.....>>>>>.....<<<<.....>>>>>>>>>>>.... .((.(((..(.(.........).)..(((((.....)))))......(((.....))).))).))..... Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigger factor, and methionine aminopeptidase; P-site tRNA 7da7 C 90 3.47 RF00030 URS00023119C2_10090 3.1.-.- 0000171 0006364 0000172 10090 ugaaggccuguuuccuaggcuacauacgagggacauguuccuuagcagugcgaccuggcucgcaccaaccacacggggcucauucucagc ....<<..<<..<<<..<..<...<.....<<.<..<.<<.<.......>.>>.>..>.>>.....>...>..>.>>>..>>..>>.... .....(..((...((..(..(...(.....(..(..(.((.((....).).)).)..)..).....)...)..).))...))..)..... Mouse Toll-like receptor 3 ectodomain in complex with lncRNA Rmrp in elongated form; RNA component of mitochondrial RNAase P (Rmrp), RNase MRP RNA 7das C 66 3.64 RF00030 URS00023119C2_10090 3.1.-.- 0000171 0006364 0000172 10090 ugaaggccuguuuccuaggcuacauacgagggaccgcaccaaccacacggggcucauucucagcgc <...<<..<<..<<<..<......<...............>......>.>>>..>>..>>....>. .....(..((...((..(..(...(...............)...)..).))...))..)....... Mouse Toll-like receptor 3 ectodomain in complex with lncRNA Rmrp in lapped form; RNA component of mitochondrial RNAase P (Rmrp), RNase MRP RNA 7dco B 179 2.5 RF00020 URS000053F313_4932 33243853 0000244,0000353 0005682,0046540 4932 aagcagcuuuacagaucaauggcggagggaggucaacaucaagaacugugggccuuugccuauagaacuuauaacgaacaugguucuugccuuuuaccagaaccauccggguguugucuccauagaaacagguaaagcuguccguuacugugggcuugccauauuuuuuggaacuuuuc ...<<<<<<.<<<<.......<<<<..<<<<<.<<<<<<<.....<<<<<<<<....>>>>>>>>..............<<<<<<<<...........>>>>>>>>...>>>>>>>>>>>>......<<<<......>>>>>>>>..>>>>>>>>.>>..................... ...((((.(.((((........(((..(((((.(((((((.....((((((((....)))))))).........((...((((((((.(.......).)))))))).))))))))))))))......((((......)))))))...))))).)).))..................... Cryo-EM structure of the activated spliceosome (Bact complex) at an atomic resolution of 2.5 angstrom; U5 snRNA 7dco F 103 2.5 RF00026 URS00006184A9_4932 33243853 0030621 0000244,0000353 0005688,0046540 4932 guucgcgaaguaacccuucguggacauuuggucaauuugaaacaauacagagaugaucagcaguuccccugcauaaggaugaaccguuuuacaaagagauuua <<<<<<<<<<.....>>>>>>>>>>.....................................<<<..<<<.....>>>...>>>................... ((((((((((.....))))))))))......................................((.((((.....)))..))).................... Cryo-EM structure of the activated spliceosome (Bact complex) at an atomic resolution of 2.5 angstrom; U6 snRNA 7dco H 169 2.5 RF00004 URS0000D77944_4932 33243853 0045131 0000348 0005686 4932 acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuuucaguguaacaacugaaaugaccuaggcucauacauuuuuuggcacggacgggaagaggagacgucgcgacccucggagucguucuugacuuggucgcuugauguuucuucuucccguuc ................................................<<<<<<......>>>>>><<<<<<..>>.>>>>...............<<<<<<<<<<...<<<<<<<<<<.<<...<<<<<<....>>>>>>>>>>>>..>>>>>>...>>>>>>>>>>. .................................................(((((......)))))..((.((()))..))...................(((.(((.(..((((.((((.((....(((((....))))).))))))...))))...))).)))).... Cryo-EM structure of the activated spliceosome (Bact complex) at an atomic resolution of 2.5 angstrom; U2 snRNA 7dvq B 90 2.89 RF00020 URS000075BAAE_9606 33509932 0000244,0000353 0005682,0046540 9606 gguuucucuucagaucgcauaaaucuuucgccuuuuacuaaagauuuccguggagaggaacaacccaauuuuuugaggccuugcaaggcu .<<<<<<<<<<<........<<<<<<<<...........>>>>>>>>...>>>>>>>>>>>...............<<<<<<..>>>>>> .(((((((((((...((...((((((((.(.......).)))))))).)))))))))))))...............((((((())))))) Cryo-EM Structure of the Activated Human Minor Spliceosome (minor Bact Complex); U5 snRNA 7dvq F 60 2.89 RF00619 URS00021ED9B2_9606 33509932 0030622,0030627 0000244,0000395 0005691 9606 uguuguaugaaaggagagaagguuagcacuccccuugacaaggauggaagaggccggccu ............................<<<<<<<<...>>>>..>>>.><<<<<>>>>> ............................(((((((.....)))..))).)((((())))) Cryo-EM Structure of the Activated Human Minor Spliceosome (minor Bact Complex); U6atac snRNA 7dvq H 63 2.89 RF00007 URS00006ECA78_9606 33509932 0045131 0000348 0005693 9606 augccuuaaacuuaugaguaaggaaaauaacgauucggggugacgcccgaagaauuuuugagc .................................<<<<<<......>>>>>>............ .................................((((((......))))))............ Cryo-EM Structure of the Activated Human Minor Spliceosome (minor Bact Complex); U12 snRNA 7e8o X 68 2.804 RF00005 URS00023358C4_562 35484139 0030533 0006412 562 gguggcuauagcucagugguagagcccuggauuuccaguugucguggguucgaaucccauuagccacc <<<<<<<<..<<<<.......>>>>.<<<<....>>>>.....<<<<<.......>>>>>>>>>>>>> ((((((((..((((....[..)))).((((....)))).....(((((..]....))))))))))))) Crystal structure of proteinaceous RNase P(PRORP) from Planctomycetes bacterium GWF2_40_8 complexed with Escherichia coli histidine pre-tRNA; histidine pre-tRNA 7eaf A 94 2.85 RF00162 URS0002311979_119072 33978763 0010468 119072 ggcuuaucaagagagggcgagggacuggcccgacgacccccggcaaccagaaauggugccaauuccugcagcggaaacguugaaagaugagccg <<<<<<<<......<<<...<<<...((>>>......>>>.<<<<.<<<....>>>>>>>....))..<<<<<....>>>>>...>>>>>>>>. ((((((((....(.(((...(((.[.[[)))......))))(((..(((....))).)))...(]].](((((....)))))..))))))))). Crystal structure of SAM-I riboswitch with the Actinomyces-1 k-turn; RNA (94-MER) 7eld B 109 4.6 RF00075 URS00023119C5_3702 34593993 0035195 0016442 3702 ugagccaaaaguucaggugaaugaugccuggcucgagaccauucaaucucauguaugagaugugaugaugucggaccaggcuucauuccccucaacuuuugccucaauc <<<<.<<<<<<<<.<<<.<<<<<<.<<<<<<.<<<<.<.<<<<..<<<<<<<..>>>>>>>..>>>>.>.>>>>.>>>>>>.>>>>>>.>>>.>>>>>>>>.>>>>... ((((.((((((((.(((.((((((.((((((..(((.(.((((..(((((((..)))))))..)))).).)))..)))))).)))))).))).)))))))).))))... Cryo-EM structure of Arabidopsis DCL1 in complex with pri-miRNA 166f; pri-miRNA 166f 7ele G 83 4.9 RF00075 URS0002311A32_3702 34593993 0035195 0016442 3702 gaaugaugccuggcucgagaccauucaaucucaugaucucaugauuaugagaugugaugaugucggaccaggcuucauucccc .<<<<<.<<<<<<.<<<<.<.<<<<<.<<<<<<<<<<<....>>>>>>>>>>>>.>>>>.>.>>>>.>>>>>>.>>>>>.... .(((((.((((((..(((.(.(((...(((((((.(((....))).)))))))...))).).)))..)))))).))))).... Cryo-EM structure of Arabidopsis DCL1 in complex with pre-miRNA 166f; pre-miRNA 166f 7eqj A 76 2.043 RF00005 URS000009F4BF_562 34315814 0030533 0006412 562 gggugauuagcucagcugggagagcaccucccuuacaaggagggggucggcgguucgaucccgucaucacccacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).(((((.......))))).....(((((..]....)))))))))))).... crystal structure of E. coli Valine tRNA; RNA (76-MER) 7eqj B 75 2.043 RF00005 URS000009F4BF_562 34315814 0030533 0006412 562 gggugauuagcucagcugggagagcaccucccuuacaaggagggggucggcgguucgaucccgucaucacccacc <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>... (((((((..((((.....[..)))).(((((.......))))).....(((((..]....))))))))))))... crystal structure of E. coli Valine tRNA; RNA (76-MER) 7evo H 148 2.5 RF00004 URS00003EE995_9606 38196034 0045131 0000348 0005686 9606 gccggcuaagaucaaguguaguaucuguucuuaucaguuuaauaucugauuccucgaggaggauuuuuggagcagggagauggaauaggagcuugcuccguccacuccacgcaucgaccugguauugcaguaccuccaggaacggugc <<..>>...<<.<<.<<<...>>>.>>.>>..<<<<<........>>>>><<<<..>>>>...............<<<<.<<<<...<<<<....>>>>.>>>>>>>>..<<<<<<.<<<<<.............>>>>>..>>>>>> ((()))...((.((.((.....)).)).))...((((........)))).((((()))))...............(((..(((....((((....))))..))).)))..(((.((..((((.............))))...)).))) The cryo-EM structure of the human 17S U2 snRNP; U2 snRNA 7ez0 N 387 3.14 RF00028 URS0002311974_5911 34381213 0000372 5911 ggagggaaaaguuaucaggcaugcaccugguagcuagucuuuaaaccaauagauugcaucgguuuaaaaggcaagaccgucaaauugcgggaaaggggucaacagccguucaguaccaagucucaggggaaacuuugagauggccuugcaaaggguaugguaauaagcugacggacaugguccuaaccacgcagccaaguccuaagucaacagaucuucuguugauauggaugcaguucacagacuaaaugucggucggggaagauguauucuucucauaagauauagucggaccucuccuuaaugggagcuagcggaugaagugaugcaacacuggagccgcugggaacuaauuuguaugcgaaaguauauugauuaguuuuggag .........<<<<<<<<<<..(((.>>>>>>>>>>.<<<<<<<<<<<......<<<<<<.>>>>>.>>>>>>..<<<<<.<....<<<<<<...<<<<<<.....<<<.<<<<.<<...<<<<<<<<<....>>>>>>>>>..<<..)))..>>.....>>......>>>>>>>....>>>>>>..>>.>>>><<...<<<<...<<<<<<<<<...>>>>>>>>>..>>>>...>>.....(((((...>.>>>>>.<<<<<<<.....>>>>>>>........)))))...((.<<<<<....>>>>><<<<<<<....<<<<>>>>>>>>>>....>>>>>>>.<<<<<<<<.<<<<<......>>>>>.>>>>>>>>..)).. .........((((((((((..{{{.)))))))))).(((((((((((....(.[[[[[.))))))).)))))..(((((.(....((((((...((((((.....(((.((((.(((..(((((((((....)))))))))..((..}}.}.))....)))......)))))))....))))))..)).))))((...((((...((((((((.....))))))))..))))...))...[.[[[[[...).))))).(((((((.....)))))))........]]]]]]..((.(((((....)))))(((((((....((((.]]]]]))))....))))))).(((((((...(((((....)))))...)))))))..)).. Apo L-21 ScaI Tetrahymena ribozyme; Apo L-21 ScaI Tetrahymena ribozyme 7ez2 N 392 3.05 RF00028 URS00023119AE_5911 34381213 0000372 5911 gguuuggagggaaaaguuaucaggcaugcaccugguagcuagucuuuaaaccaauagauugcaucgguuuaaaaggcaagaccgucaaauugcgggaaaggggucaacagccguucaguaccaagucucaggggaaacuuugagauggccuugcaaaggguaugguaauaagcugacggacaugguccuaaccacgcagccaaguccuaagucaacagaucuucuguugauauggaugcaguucacagacuaaaugucggucggggaagauguauucuucucauaagauauagucggaccucuccuuaaugggagcuagcggaugaagugaugcaacacuggagccgcugggaacuaauuuguaugcgaaaguauauugauuaguuuuggag ..............<<<<<<<<<<..[((.>>>>>>>>>>.<<<<<<<<<<<......<<<<<<.>>>>>.>>>>>>..<<<<<.<....<<<<<<...<<<<<<.....<<<.<<<<.<<...<<<<<<<<<....>>>>>>>>>..<<..)).].>>.....>>......>>>>>>>....>>>>>>..>>.>>>><<...<<<<...<<<<<<<<<...>>>>>>>>>..>>>>...>>.....(((((...>.>>>>>.<<<<<<<.....>>>>>>>........)))))...((.<<<<<....>>>>><<<<<<<....<<<<>>>>>>>>>>....>>>>>>>.<<<<<<<<.<<<<<......>>>>>.>>>>>>>>..)).. ..............((((((((((..{{{.)))))))))).(((((.(((((....(.[[[[[[))))))..)))))..(((((.(....((((((...((((((.....(((.((((.(((..(((((((((....)))))))))..((..}}.}.))....)))......)))))))....))))))..)).))))((...((((...(((((((((...)))))))))..))))...))...[.[[[[[...).))))).(((((((.....)))))))........]]]]]]..((.(((((....)))))(((((((.....(((]]]]]]))).....))))))).((((((((.((((((....)))))).))))))))..)).. Holo L-16 ScaI Tetrahymena ribozyme; Holo L-16 ScaI Tetrahymena ribozyme 7f36 F 76 3.098 RF00005 URS00001ACE3E_562 0030533 0006412 562 gcgggaauagcucaguugguagagcacgaccuugccaaggucggggucgcgaguucgagucucguuucccgcucca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).((((((.....)))))).....(((((..]....)))))))))))).... TacT complexed with acetyl-glycyl-tRNAGly; RNA (76-MER) 7f36 G 76 3.098 RF00005 URS00001ACE3E_562 0030533 0006412 562 gcgggaauagcucaguugguagagcacgaccuugccaaggucggggucgcgaguucgagucucguuucccgcucca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).(((((.......))))).....(((((..]....)))))))))))).... TacT complexed with acetyl-glycyl-tRNAGly; RNA (76-MER) 7f36 H 72 3.098 RF00005 URS00001ACE3E_562 0030533 0006412 562 gcgggaauagcucaguugguagagcacgaccuuaaggucggggucgcgaguucgagucucguuucccgcucc <<<<<<<..<<<<........>>>>.<<<<<....>>>>>.....<<<<<.......>>>>>>>>>>>>... (((((((..((((.....[..)))).(((((....))))).....(((((..]....))))))))))))... TacT complexed with acetyl-glycyl-tRNAGly; RNA (76-MER) 7f36 E 73 3.098 RF00005 URS00001ACE3E_562 0030533 0006412 562 gcgggaauagcucaguugguagagcacgaccuuaaggucggggucgcgaguucgagucucguuucccgcucca <<<<<<<..<<<<........>>>>.<<<<<<..>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).(((((....))))).....(((((..]....)))))))))))).... TacT complexed with acetyl-glycyl-tRNAGly; RNA (76-MER) 7jju A 51 2.604 RF04222 URS00021ED9C7_12045 32848042 0039694 12045 ngaacuagcucagcauacacgaguugcaagcaugggaaguucaagccucgn .<<<<<..<<<<<<...............>>.>>>>.>>>>>......... .(((((.[((((((............]..)).)))).)))))......... Crystal structure of en exoribonuclease-resistant RNA (xrRNA) from Potato leafroll virus (PLRV); Potato leafroll virus xrRNA 7jju B 51 2.604 RF04222 URS00021ED9C7_12045 32848042 0039694 12045 ngaacuagcucagcauacacgaguugcaagcaugggaaguucaagccucgn .<<<<<..<<<<<<...............>>.>>>>.>>>>>......... .(((((.[((((((............]..)).)))).)))))......... Crystal structure of en exoribonuclease-resistant RNA (xrRNA) from Potato leafroll virus (PLRV); Potato leafroll virus xrRNA 7jql 1x 76 3.0 RF00005 URS000041AF00_562 32787108 0030533 0006412 562 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the Thermus thermophilus 70S ribosome in complex with Bac7-001, mRNA, and deacylated P-site tRNA at 3.00A resolution; P-site tRNA 7jql 2x 76 3.0 RF00005 URS000041AF00_562 32787108 0030533 0006412 562 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the Thermus thermophilus 70S ribosome in complex with Bac7-001, mRNA, and deacylated P-site tRNA at 3.00A resolution; P-site tRNA 7jqm 1x 76 3.05 RF00005 URS000041AF00_562 32787108 0030533 0006412 562 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the Thermus thermophilus 70S ribosome in complex with Bac7-002, mRNA, and deacylated P-site tRNA at 3.05A resolution; P-site tRNA 7jqm 2x 76 3.05 RF00005 URS000041AF00_562 32787108 0030533 0006412 562 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(.(((..]....))).)))))))..... Crystal structure of the Thermus thermophilus 70S ribosome in complex with Bac7-002, mRNA, and deacylated P-site tRNA at 3.05A resolution; P-site tRNA 7jss 5 77 3.7 RF00005 URS000041AF00_83333 33144582 0030533 0006412 83333 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))..... ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-II); tRNAfMet 7jsw 5 77 3.8 RF00005 URS000041AF00_83333 33144582 0030533 0006412 83333 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))..... ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-III); tRNAfMet 7jsz 5 77 3.7 RF00005 URS000041AF00_83333 33144582 0030533 0006412 83333 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))..... ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-IV); tRNAfMet 7jt1 5 77 3.3 RF00005 URS000041AF00_83333 33144582 0030533 0006412 83333 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... 70S ribosome stalled on long mRNA with ArfB-1 and ArfB-2 bound (+9-III); tRNAfMet 7jt2 5 77 3.5 RF00005 URS000041AF00_83333 33144582 0030533 0006412 83333 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... 70S ribosome stalled on long mRNA with ArfB bound in the A site; tRNAfMet 7jt3 5 76 3.7 RF00005 URS000041AF00_83333 33144582 0030533 0006412 83333 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacc .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>.>....<<<<.........>>>>>>>>>>.... .((((((..((((.........)))).(((((.......))))).....(((((.......))))))))))).... Rotated 70S ribosome stalled on long mRNA with ArfB-1 and ArfB-2 bound in the A site (+9-IV); tRNAfMet 7k00 Y 74 1.98 RF00005 URS000009F4BF_562 32924932 0030533 0006412 562 gggugauuagcucaggggagagcaccucccuuacaaggagggggucggcgguucgaucccgucaucacccacca <<<<<<<..<<<<......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..(((....[...))).(((((.......))))).....(.(((..]....))).)))))))).... Structure of the Bacterial Ribosome at 2 Angstrom Resolution; A-site tRNA-val 7k00 Z 76 1.98 RF00005 URS00002905B5_562 32924932 0030533 0006412 562 gcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Structure of the Bacterial Ribosome at 2 Angstrom Resolution; P-site tRNA-fMet 7k50 5 77 3.4 RF00005 URS000041AF00_83333 34330903 0030533 0006412 83333 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Pre-translocation non-frameshifting(CCA-A) complex (Structure I); tRNAfMet 7k50 6 77 3.4 RF00005 URS000041AF00_83333 34330903 0030533 0006412 83333 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>........<<.......>>...>>>>>>..... .((((((..((((.........)))).(((((.......)))))........((.......))...))))))..... Pre-translocation non-frameshifting(CCA-A) complex (Structure I); tRNAfMet 7k50 7 77 3.4 RF00005 URS00002E063F_83333 34330903 0030533 0006412 83333 cggcgaguagcgcagcuugguagcgcaacugguuugggaccagugggucggagguucgaauccucucucgccgacca <<<<<<<..<<<<.........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((......[..)))).(((((.......)))))......((((..]....)))).))))))).... Pre-translocation non-frameshifting(CCA-A) complex (Structure I); tRNAPro 7k51 5 77 3.5 RF00005 URS00002E063F_83333 34330903 0030533 0006412 83333 cggcgaguagcgcagcuugguagcgcaacugguuugggaccagugggucggagguucgaauccucucucgccgacca .<<<<<<..<<<<.........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......)))))......((((..]....)))).))))))..... Mid-translocated non-frameshifting(CCA-A) complex with EF-G and GDPCP (Structure II); tRNAPro 7k51 6 77 3.5 RF00005 URS000041AF00_83333 34330903 0030533 0006412 83333 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>.>....<<<<<.......>>>>>>>>>>>..... .((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))..... Mid-translocated non-frameshifting(CCA-A) complex with EF-G and GDPCP (Structure II); tRNAfMet 7k52 5 77 3.4 RF00005 URS00002E063F_83333 34330903 0030533 0006412 83333 cggcgaguagcgcagcuugguagcgcaacugguuugggaccagugggucggagguucgaauccucucucgccgacca <<<<<<<..<<<<.........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((......[..)))).(((((.......)))))......((((..]....)))).))))))).... Near post-translocated non-frameshifting(CCA-A) complex with EF-G and GDPCP (Structure III); tRNAPro 7k52 6 77 3.4 RF00005 URS000041AF00_83333 34330903 0030533 0006412 83333 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<.<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>.>..... .((((((..((.(......[..).)).(((((.......))))).....(((((..]....)))))))))))..... Near post-translocated non-frameshifting(CCA-A) complex with EF-G and GDPCP (Structure III); tRNAfMet 7k53 5 77 3.2 RF00005 URS000041AF00_83333 34330903 0030533 0006412 83333 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Pre-translocation +1-frameshifting(CCC-A) complex (Structure I-FS); tRNAfMet 7k53 6 77 3.2 RF00005 URS000041AF00_83333 34330903 0030533 0006412 83333 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>.>....<<<<<.......>>>>>>>>>>>..... .((((((..((((.........)))).(((((.......))))).......(((.......)))..))))))..... Pre-translocation +1-frameshifting(CCC-A) complex (Structure I-FS); tRNAfMet 7k53 7 77 3.2 RF00005 URS00002E063F_83333 34330903 0030533 0006412 83333 cggcgaguagcgcagcuugguagcgcaacugguuugggaccagugggucggagguucgaauccucucucgccgacca <<<<<<<..<<<<.........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((......[..)))).(((((.......)))))......((((..]....)))).))))))).... Pre-translocation +1-frameshifting(CCC-A) complex (Structure I-FS); tRNAPro 7k54 5 77 3.2 RF00005 URS00002E063F_83333 34330903 0030533 0006412 83333 cggcgaguagcgcagcuugguagcgcaacugguuugggaccagugggucggagguucgaauccucucucgccgacca <<<<<<<..<<<<.........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((......[..)))).(((((.......)))))......((((..]....)))).))))))).... Mid-translocated +1-frameshifting(CCC-A) complex with EF-G and GDPCP (Structure II-FS); tRNAPro 7k54 6 77 3.2 RF00005 URS000041AF00_83333 34330903 0030533 0006412 83333 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Mid-translocated +1-frameshifting(CCC-A) complex with EF-G and GDPCP (Structure II-FS); tRNAfMet 7k55 5 77 3.3 RF00005 URS00002E063F_83333 34330903 0030533 0006412 83333 cggcgaguagcgcagcuugguagcgcaacugguuugggaccagugggucggagguucgaauccucucucgccgacca <<<<<<<..<<<<.........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... .((((((..((((......[..)))).(((((.......)))))......((((..]....)))).))))))..... Near post-translocated +1-frameshifting(CCC-A) complex with EF-G and GDPCP (Structure III-FS); tRNAPro 7k55 6 77 3.3 RF00005 URS000041AF00_83333 34330903 0030533 0006412 83333 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<.........>>>>>>>>>>..... .((((((..((.(......[..).)).(((((.......))))).....(((((..]....)))))))))))..... Near post-translocated +1-frameshifting(CCC-A) complex with EF-G and GDPCP (Structure III-FS); tRNAfMet 7k98 C 77 2.19 RF00005 URS000035A243_83332 33885823 0030533 0006412 83332 ggccagguagcucagucgguaugagcguccgccugaaaagcggaaggucggcgguucgaucccgccccuggccacca <<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[...)))).(((((.......))))).....(((((..]....)))))))))))).... Preaminoacylation complex of M. tuberculosis PheRS with cognate precursor tRNA and 5'-O-(N-phenylalanyl)sulfamoyl-adenosine (F-AMS); tRNA(Phe) 7k98 F 77 2.19 RF00005 URS000035A243_83332 33885823 0030533 0006412 83332 ggccagguagcucagucgguaugagcguccgccugaaaagcggaaggucggcgguucgaucccgccccuggccacca <<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[...)))).(((((.......))))).....(((((..]....)))))))))))).... Preaminoacylation complex of M. tuberculosis PheRS with cognate precursor tRNA and 5'-O-(N-phenylalanyl)sulfamoyl-adenosine (F-AMS); tRNA(Phe) 7k9m C 66 2.5 RF00005 URS000035A243_83332 33885823 0030533 0006412 83332 agguagcucagucgguaugagcguccgccugaaaagcggaaggucggcgguucgaucccgccccug <<<..<<<<<.......>>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>. (((..((((.....[...)))).(((((.......))))).....((((...].....))))))). Crystal structure of the complex of M. tuberculosis PheRS with cognate precursor tRNA and 5'-O-(N-phenylalanyl)sulfamoyl-adenosine; tRNA(Phe) 7ka0 C 66 2.4 RF00005 URS000035A243_83332 33885823 0030533 0006412 83332 agguagcucagucgguaugagcguccgccugaaaagcggaaggucggcgguucgaucccgccccug <<<..<<<<<.......>>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>. (((..(((((....[..))))).(((((.......))))).....((((...].....))))))). Crystal structure of the complex of M. tuberculosis PheRS with cognate precursor tRNA and phenylalanine; tRNA(Phe) 7ka0 F 66 2.4 RF00005 URS000035A243_83332 33885823 0030533 0006412 83332 agguagcucagucgguaugagcguccgccugaaaagcggaaggucggcgguucgaucccgccccug <<<..<<<<<.......>>>>>.<<<<<.......>>>>>.....<<<<.........>>>>>>>. (((..((((.....[...)))).(((((.......))))).....(((....]......)))))). Crystal structure of the complex of M. tuberculosis PheRS with cognate precursor tRNA and phenylalanine; tRNA(Phe) 7kab C 66 2.5 RF00005 URS000035A243_83332 33885823 0030533 0006412 83332 agguagcucagucgguaugagcguccgccugaaaagcggaaggucggcgguucgaucccgccccug <<<..<<<<<.......>>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>. (((..(((((....[..))))).(((((.......))))).....(((((..]....)))))))). M. tuberculosis PheRS complex with cognate precursor tRNA and phenylalanine; tRNA(Phe) 7kd1 A 89 1.9 RF01831 URS000080DF21_210007 33571639 0046653 210007 ggagaguagaugauucgcguuaagugugugugaaugggaugucgucacacaacgaagcgagagcgcggugaaucauugcauccgcucca <<<<....<<<<<<<<<<<<....<<<<<<<<<...(((((...>>>>>>>.>>..<<....>>>>>.>>>>>>>>>.))))).>>>>. ((((....((((((((((((......(((((((...[[[[[...))))))).....((....))))).))))))))).]]]]].)))). Apo structure of the THF riboswitch aptamer domain; tetrahydrofolate riboswitch aptamer domain 7kga A 89 2.1 RF00525 URS00023119B4_985683 34133732 0006412 985683 gggggccagaugucaugucucucaagccuaggagacacuagacacucuggacuaucgguuagaggaaacccccccaaaaauguauaggc <<<<<<<<<<<<<<.<<<<<<<...((((.>>>>>>>...>>>>.>>>>>.<<..........>>.....>>>>>..........)))) ((((((((((((((((((((((...[[[[.))))))).).)))).))))).((..........)).....)))))..........]]]] Crystal structure of a mosquito-borne flavivirus dumbbell RNA; RNA (90-MER) 7kga B 90 2.1 RF00525 URS00023119B4_985683 34133732 0006412 985683 gggggccagaugucaugucucucaagccuaggagacacuagacacucuggacuaucgguuagaggaaacccccccaaaaauguauaggcu <<<<<<<<<<<<<<<<<<<<<<...(((((>>>>>>>.>.>>>>.>>>>>.<<..........>>.....>>>>>.........))))). ((((((((((((((((((((((...[[[[[))))))).).)))).))))).((..........)).....))))).........]]]]]. Crystal structure of a mosquito-borne flavivirus dumbbell RNA; RNA (90-MER) 7kgb y 77 2.7 RF00005 URS000041AF00_83332 36827973 0030533 0006412 83332 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(.(((..]....))).)))))))..... CryoEM structure of A2296-methylated Mycobacterium tuberculosis ribosome bound with SEQ-9; tRNA-initiator Met(CAU) 7ki3 B 19 3.0 URS00001B8558_9606 34824224 0042593,0042632,0045723,0046322,0070328,0106120 9606 uggagugugacaauggugu ................... ................... Human Argonaute2:miR-122 bound to the HCV genotype 1a site-1 RNA; miR-122 7ki3 E 11 3.0 URS00001B8558_9606 34824224 0042593,0042632,0045723,0046322,0070328,0106120 9606 uggaguguggu ........... ........... Human Argonaute2:miR-122 bound to the HCV genotype 1a site-1 RNA; miR-122 7kjt A 70 3.34 RF00005 URS00021ED95A_2190 33277478 0030533 0006412 2190 ggcccguagcucagucuggcagagcgccugaaccagguggucgaggguucaaaucccuucgggcccgcca <<.<<.....<............>.<<<<.....>>>>....<<<<<.......>>>>>..>>.>>.... .(.((.............[......(((((...)))))....(((((..]....)))))..)).)..... KEOPS tRNA modifying sub-complex of archaeal Cgi121 and tRNA; RNA (70-MER) 7kju A 75 3.102 RF00005 URS00021ED95A_2190 33277478 0030533 0006412 2190 ggcccguagcucagucuggcagagcgccuggcuuuuaaccagguggucgaggguucaaaucccuucgggcccgcc <<.<<.....<............>.<<<<<<.......>>>>>>....<<<<<.......>>>>>..>>.>>... ((.((.............[......((((((.......))))))....(((((..]....)))))..)).))... Cgi121-tRNA complex; RNA (75-MER) 7lh5 AV 76 3.27 RF00005 URS00001BBAFC_562 34117352 0030533 0006412 562 gcgggguggagcagccugguagcucgucgggcucauaacccgaagaucgucgguucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))..... Crystal structure of the Thermus thermophilus 70S ribosome in complex with plazomicin, mRNA and tRNAs; P-site tRNA fMet 7lh5 AW 76 3.27 RF00005 URS00005AA258_562 34117352 0030533 0006412 562 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca ...<<<...<<<<........>>>>..<<<<<.....>>>>>........<...........>...>>>....... ............................((.........)).........(...........)............. Crystal structure of the Thermus thermophilus 70S ribosome in complex with plazomicin, mRNA and tRNAs; E-Site tRNA Phe and A-site tRNA Phe 7lh5 AY 19 3.27 RF00005 URS00005AA258_562 34117352 0030533 0006412 562 aggggauugaaaauccccg ..<<<<<.....>>>>>.. .....(.......)..... Crystal structure of the Thermus thermophilus 70S ribosome in complex with plazomicin, mRNA and tRNAs; E-Site tRNA Phe and A-site tRNA Phe 7lh5 CV 77 3.27 RF00005 URS00001BBAFC_562 34117352 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaagaucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the Thermus thermophilus 70S ribosome in complex with plazomicin, mRNA and tRNAs; P-site tRNA fMet 7lh5 CW 76 3.27 RF00005 URS00005AA258_562 34117352 0030533 0006412 562 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<...<<..........>>...<<<<.......>>>.>.......<.<........>>..>>>>>>>.... ((...((...(............).........................................))...)).... Crystal structure of the Thermus thermophilus 70S ribosome in complex with plazomicin, mRNA and tRNAs; E-Site tRNA Phe and A-site tRNA Phe 7lh5 CY 21 3.27 RF00005 URS00005AA258_562 34117352 0030533 0006412 562 gcaggggauugaaaauccccg ...<<<<<<.....>>>>>>. ....((((.......)))).. Crystal structure of the Thermus thermophilus 70S ribosome in complex with plazomicin, mRNA and tRNAs; E-Site tRNA Phe and A-site tRNA Phe 7lj3 A 75 2.9 RF00005 URS00023119A0_9606 34535641 0030533 0006412 9606 ucccugguggucuagugguuaggauucggcgcucucaccgccgcggcccggguucgauucccggucagggaacca <<<<<<<...<<<........>>>..<<<<.........>>>>....<<<<<.......>>>>>>>>>>>>.... (((((((..(.((....[...)).).(((((.......)))))....(((((..]....)))))))))))).... Structure of human transfer RNA visualized in the cytomegalovirus, a DNA virus; RNA (75-MER) 7lj3 B 75 2.9 RF00005 URS00023119A0_9606 34535641 0030533 0006412 9606 ucccugguggucuagugguuaggauucggcgcucucaccgccgcggcccggguucgauucccggucagggaacca <<<<<<<...<<<........>>>..<<<<.........>>>>....<<<<<.......>>>>>>>>>>>>.... (((((((..(.((....[...)).).(((((.......)))))....(((((..]....)))))))))))).... Structure of human transfer RNA visualized in the cytomegalovirus, a DNA virus; RNA (75-MER) 7lj3 C 75 2.9 RF00005 URS00023119A0_9606 34535641 0030533 0006412 9606 ucccugguggucuagugguuaggauucggcgcucucaccgccgcggcccggguucgauucccggucagggaacca <<<<<<<...<<<........>>>..<<<<.........>>>>....<<<<<.......>>>>>>>>>>>>.... (((((((..(.((....[...)).).(((((.......)))))....(((((..]....)))))))))))).... Structure of human transfer RNA visualized in the cytomegalovirus, a DNA virus; RNA (75-MER) 7lma B 156 3.3 RF00025 URS0000402983_5911 33981033 2.7.7.49 0003720 0007004 0000333 5911 cccgcuuaauucauucagaucuguaauagaacugucauucaaccccaaaaaucuagugcugauauaaccuucaccaauuagguucaaauaagugguaaugcgggacaaaagacuaucgacauuugauacacuauuuaucaauggaugucuuauuuu <<<<<..........<<<.<<<<...>>>>.>>>...............................<<<<<..((((.((>>>>>.....)).))))...>>>>>.....<<<<.<<...<<.<<<<<<.......>>>>>>>>.>>>>>>...... (((((..........(((.(((.....))).)))...............................(((((..[[[[.[[))))).....]].]]]]...)))))....(((((.(....(..((((((.......)))))).)..))))))..... Tetrahymena telomerase T3D2 structure at 3.3 Angstrom; Telomerase RNA 7lmb B 151 3.8 RF00025 URS0000402983_5911 33981033 2.7.7.49 0003720 0007004 0000333 5911 cccgcuuaauucauucagaucuguaauagaacugucauucaaccccaaaagugcugauauaaccuucaccaauuagguucaaauaagugguaaugcgggacaaaagacuaucgacauuugauacacuauuuaucaauggaugucuuauuuu <<<<<..........<<<.<<<<...>>>>.>>>..........................<<<<<..((((.((>>>>>.....)).))))...>>>>>.....<<<<.<<<..<<.<<<<<<.......>>>>>>>>>>>>>>>...... (((((..........(((.(((.....))).)))..........................[.[[[..((((.((]]].].....)).))))...)))))....(((((.(((..(..((((((.......)))))).)))))))))..... Tetrahymena telomerase T5D5 structure at 3.8 Angstrom; Telomerase RNA 7ls1 n2 75 3.3 RF00005 URS0000326EAC_10090 34815424 0030533 0006412 10090 agcagaguggcgcagcggaagcgugcugggcccauaacccagaggucgauggaucgaaaccauccucugcuacca <<<<<<<..<<...........>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((.(.......).)).(((((.......))))).....(((((.......)))))))))))).... 80S ribosome from mouse bound to eEF2 (Class II); tRNA 7ls2 n2 75 3.1 RF00005 URS0000326EAC_10090 34815424 0030533 0006412 10090 agcagaguggcgcagcggaagcgugcugggcccauaacccagaggucgauggaucgaaaccauccucugcuacca <<<<<<<..<<<<.......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))).... 80S ribosome from mouse bound to eEF2 (Class I); tRNA 7lv0 5 77 3.2 RF00005 URS00002E063F_83333 34330903 0030533 0006412 83333 cggcgaguagcgcagcuugguagcgcaacugguuugggaccagugggucggagguucgaauccucucucgccgacca <<<<<<<..<<<<.........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Pre-translocation rotated ribosome +1-frameshifting(CCC-A) complex (Structure Irot-FS); tRNAPro 7lv0 6 77 3.2 RF00005 URS000041AF00_83333 34330903 0030533 0006412 83333 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((.........)))).(((((.......))))).....(.(((.......))).)))))))..... Pre-translocation rotated ribosome +1-frameshifting(CCC-A) complex (Structure Irot-FS); tRNAfMet 7lyf A 139 3.4 RF02340,RF00005 URS0002311981_11060 33953197 0030533 0039694 11060 gcccggauagcucagucgguagagcagcggagcuguuagucuacguggaccgacaaagacagauucuuugagggagcuaagcucaacguaguucuaacagcuccgcggguccaggguucaagucccuguucgggcgcca <<<<<<...<<<<........>>>>.<<<<<<<<<<<<<.<<<<<<.<<<<..<<<<<<.....>>>>>>.>>.........>>.>>>>>>..>>>>>>>>>>>>>.....<<<<<.......>>>>>.>>>>>>.... (((((((...(((.....[..)))..(((((((((((((..(((((.((((..((((((.....)))))).)).........)).)))))...))))))))))))).....(((((..]....)))))))))))).... Dengue virus RNA promoter stem-loop A fused with tRNA-scaffold; RNA promoter stem-loop A fused with tRNA 7lyg A 142 3.804 RF02340,RF00005 URS0002311A29_64320 33953197 0030533 0039694 64320 gcccggauagcucagucgguagagcagcgguagcuguugaucugugugaaucagacugcgacaguucgaguuugaagcgaaagcuagcaacaguaucaacagcuaccgcggguccaggguucaagucccuguucgggcgcca <<<<<<<..<<<<........>>>>.<<<<<<<<<<<<<<<<<<<<<...<<<<<<<.<<......>>>>>>>>>.>>...........>>>>.>>>>>>>>>>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((.(..((((.....[..)))).(((((.(((((((((((((((...(((.(((.(((....)))))).))).))...........)))).))))))))).))))).....(((((..]....)))))).))))).... Zika virus RNA promoter stem-loop A with tRNA-scaffold; RNA promoter stem-loop A fused with tRNA 7lyj A 66 2.11 RF00507 URS0002311984_2697049 34845084 0075523 2697049 cgguguaagugcagcccgucuuacaccgugcggcacagcggaaacgcugaugucguauacagggcu <<<<<<<<<...(((((..>>>>>>>>><<<<<<<<<<<<....>>>>>.>>>>>>>....))))) (((((((((...[[[[[..)))))))))((((((((((((....))))).)))))))....]]]]] SARS-CoV-2 frameshifting pseudoknot RNA; RNA (66-MER) 7m4x v 77 2.66 RF00005 URS00002D670D_480119 34044590 0030533 0006412 480119 ggcuaugnagcucaguuggnuagagcaccgcacucauaaugcgggggucacaagnucaagucucgucauagccacca <<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<.<<.......>>.>>>>>>>>>.... (((((((..((((.........)))).(((((.......))))).....((.((.......)).))))))))).... A. baumannii Ribosome-Eravacycline complex: P-site tRNA 70S; tRNA-met 7m4y v 77 2.5 RF00005 URS00002D670D_480119 34044590 0030533 0006412 480119 ggcuaugnagcucaguuggnuagagcaccgcacucauaaugcgggggucacaagnucaagucucgucauagccacca <<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<.<<.......>>.>>>>>>>>>.... (((((((..((((.........)))).(((((.......))))).....((.((.......)).))))))))).... A. baumannii Ribosome-Eravacycline complex: E-site tRNA 70S; tRNA-met 7m5d 5 76 2.8 RF00005 URS0000EEACF3_562 0030533 0006412 562 gcggggungagcagccuggnagcucgucgggnugaaaacccgaagaucgucggnucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(.(((..]....))).)))))))..... Cryo-EM structure of a non-rotated E.coli 70S ribosome in complex with RF3-GTP, RF1 and P-tRNA (state I); P-tRNA 7mdl E 84 2.32 RF01852 URS000014E598_32630 36929010 0030533 0006412 32630 gcccggaugauccucaguggucuggggugcaggaaccuguagcugucuagcgacagagugguucaauuccaccuuucgggcgcc <<<<<<<.....<<<<<....>>>>>.<<<<<<..>>>>>>.<<<<<....>>>>>.<<<<.......>>>>..>>>>>>>... (((((((.(...(((((..[.))))).((((((..)))))).(((((....))))).((((..]....))))).)))))))... High-resolution crystal structure of human SepSecS-tRNASec complex; RNA (90-MER) 7mdz 2 76 3.2 RF00005 URS00005AA258_9986 34403584 0030533 0006412 9986 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((........)))).(((((.......))))).....((.((.......)).))))))))).... 80S rabbit ribosome stalled with benzamide-CHX; P-site tRNA 7mky A 66 1.31 RF00507 URS0002311984_2697049 34845084 0075523 2697049 cgguguaagugcagcccgucuuacaccgugcggcacagcggaaacgcugaugucguauacagggcu <<<<<<<<<...(((((..>>>>>>>>><<<<<<<<<<<<....>>>>>.>>>>>>>....))))) (((((((((...[[[[[..)))))))))((((((((((((....))))).)))))))....]]]]] SARS-CoV-2 frameshifting pseudoknot RNA; RNA (66-MER) 7mlw F 125 2.7 RF00442 URS00023119BD_987057 34257148 0010468 987057 ggaucgcuaggguuccggucgugcggcgucgccgcacgaugcugguccgagagcaauccggucuugccuucgccucguucgcgaggaaacggcgaggcuccacggagggauaaaagcccgggagg <<<<.<<..<<...<<<<<<<<<<<<<<.>>>>>>>>>>>..>>>.>>....>>.>>>>.....<<<<.<..<<<<<....>>>>>..>.>>>>........<...<<<.......>>>....>. ((((.((..((...((((((((((((((.))))))))))).).)).))....)).))))((..(((((.(..(((((....)))))..).)))))..)).(.[...(((.......))).)..]. Burkholderia sp. TJI49 Guanidine-I riboswitch; Guanidine-I riboswitch 7mlx R 65 2.09 RF00507 URS0002311991_2697049 34328734 0075523 2697049 ggcgguguaagugcagcccgucuuacaccgugcggcacagaaacacugaugucguauacagggcg .<<<<<<<<<<....((((..>>>>>>>>>><<<<<<<<<.....>>>.>>>>>>.....)))). .((((((((((....[[[[..))))))))))(((((((((.....))).)))))).....]]]]. SARS-CoV-2 programmed -1 frameshifting element three stem H-type pseudoknot; RNA (65-MER) 7mq8 L0 242 3.6 RF00957 URS0002311998_9606 34516797 0035195 0016442 9606 gaucgauguggugacgucgugcucucccgggccggguccgcggaccccggcccgaccucgcgcgggguccucugacgcggcagacagcccucgcugucgccgacuugcgggcggccccccuccgcggcggugggggugccgucccgccggcccgugcgucggcuccgggcccuugcggugcuccuggagcgcuccggguugcaggugcccgaggccgaugagaaaagccuucucuagcgauc ...................<<.<<....<<<<<<<<<<<<>>>>>>>.>>>>><<<<<<<..>>>>>>>....>>>>.<<<<<......>>.>>><<<<.>>>>...<<<<<<<<<<<<<.<<<...>>>.>>>>>.>>>>>.>>>..<<<<<<..>>..>>>>...................................................<<.>>...................... ..................(((.((....(((((((((((())))))).)))))(((((((())))))))....)))))(((((......)).)))((((.))))..((((.(((((((((.(((...))).))))).)))).).))).((((((()))..))))...................................................(...)...................... Cryo-EM structure of the human SSU processome, state pre-A1; 5'ETS rRNA 7mq8 L2 215 3.6 RF00012,RF01848 URS000053962A_9606 34516797 0006396 0005730 9606 gacuauacuuucagggaucauuucuauaguguguuacuagagaaguuucucugaacguguagagcaccgaaaaccacgaggaagagagguagcguuuucuccugagcgugaagccggcuuucuggcguugcuuggcugcaacugccgucagccauugaugaucguucuucucuccguauuggggagugagagggagagaacgcggucugaguggu .........................................................................<<<<.....<<.......<<<<<<<<<<<<....<.......<<<<....<<<<<<<<......>>>>>.>>>...>>>>.........>..<<<<<<<<<<.....>>>>>>.>>>>>>>>>>>>>>>>...>>..>>>>. .........................................................................((((......(.......((((((((((((....(...(...((((..(.(((((.((......)).)).))))..))))..)......)..((((((((((.....)))))).))))))))))))))))...)...)))). Cryo-EM structure of the human SSU processome, state pre-A1; U3 snoRNA 7mq9 L0 242 3.87 RF00957 URS0002311998_9606 34516797 0035195 0016442 9606 gaucgauguggugacgucgugcucucccgggccggguccgcggaccccggcccgaccucgcgcgggguccucugacgcggcagacagcccucgcugucgccgacuugcgggcggccccccuccgcggcggugggggugccgucccgccggcccgugcgucggcuccgggcccuugcggugcuccuggagcgcuccggguugcaggugcccgaggccgaugagaaaagccuucucuagcgauc ...................<<.<<....<<<<<<<<<<<<>>>>>>>.>>>>><<<<<<<..>>>>>>>....>>>>.<<<<<......>>.>>><<<<.>>>>...<<<<<<<<<<<<<.<<<...>>>.>>>>>.>>>>>.>>>..<<<<<<..>>..>>>>...................................................<<.>>...................... ..................(((.((....(((((((((((())))))).)))))(((((((())))))))....)))))(((((......)).)))((((.))))..((((.(((((((((.(((...))).))))).)))).).))).((((((()))..))))...................................................(...)...................... Cryo-EM structure of the human SSU processome, state pre-A1*; 5'ETS rRNA 7mq9 L2 215 3.87 RF00012,RF01848 URS000053962A_9606 34516797 0006396 0005730 9606 gacuauacuuucagggaucauuucuauaguguguuacuagagaaguuucucugaacguguagagcaccgaaaaccacgaggaagagagguagcguuuucuccugagcgugaagccggcuuucuggcguugcuuggcugcaacugccgucagccauugaugaucguucuucucuccguauuggggagugagagggagagaacgcggucugaguggu .........................................................................<<<<.....<<.......<<<<<<<<<<<<....<.......<<<<....<<<.<<<<......>>>>..>>>...>>>>.........>..<<<<<<<<<<.....>>>>>>.>>>>>>>>>>>>>>>>...>>..>>>>. .........................................................................((((......(........(((((((((((....(...(...((((..(.(((((.((......)).)).))))..))))..)......)..((((((((((.....)))))).)))))))))))))))....)...)))). Cryo-EM structure of the human SSU processome, state pre-A1*; U3 snoRNA 7mqa L0 16 2.7 RF00957 URS0002311998_9606 34516797 0035195 0016442 9606 gaucgauguggugacg ................ ................ Cryo-EM structure of the human SSU processome, state post-A1; 5'ETS rRNA 7mqa L2 177 2.7 RF00012,RF01848 URS000053962A_9606 34516797 0006396 0005730 9606 gacuauacuuucagggaucauaguguguuacuaaaccacgaggaagagagguagcguuuucuccugagcgugaagccggcuuucuggcguugcuuggcugcaacugccgucagccauugaugaucguucuucucuccguauuggggagugagagggagagaacgcggucugaguggu ..................................<<<<<.....<<.......<<<<<<<<<<<<....<.......<<<<....<<<<<<<<......>>>>>.>>>...>>>>.........>..<<<<<<<<<<.....>>>>>>.>>>>>>>>>>>>>>>>...>>..>>>>> ..................................(((((......(.......((((((((((((....(...(...((((..(.((((((((......))))).))))..))))..)......)..((((((((((.....)))))).))))))))))))))))...)...))))) Cryo-EM structure of the human SSU processome, state post-A1; U3 snoRNA 7mrl A 75 3.15 RF00005 URS0002311A18_9606 34384537 0030533 0006412 9606 acccggauagcucagucgguagagcaucagacaggaaacugucugaggguccaggguucaagucccuguucgggu <<<<<<...<<<<........>>>>.<<<<<<<<....>>>>>>>>.....<<<<<.......>>>>>.>>>>>> (((((((..((((.....[..)))).((((((((....)))))))).....(((((..]....)))))))))))) Structure of HIV-1 matrix domain bound to human tRNALys3; tRNA Lys3 7msc y 77 2.97 RF00005 URS000041AF00_83332 35064151 0030533 0006412 83332 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((.........)))).(((((.......))))).....(.(((.......))).)))))))..... Mtb 70SIC in complex with MtbEttA at Pre_R0 state; initiator tRNA (Met) 7msh y 75 3.23 RF00005 URS000041AF00_83332 35064151 0030533 0006412 83332 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaac .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.......<<<.......>>>..>>>>>>... .((((((..((((......[..)))).(((((.......)))))........((..]....))...))))))... Mtb 70SIC in complex with MtbEttA at Pre_R1 state; initiator tRNA (Met) 7msm y 77 2.79 RF00005 URS000041AF00_83332 35064151 0030533 0006412 83332 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Mtb 70SIC in complex with MtbEttA at Trans_R0 state; initiator tRNA (Met) 7msz y 77 3.1 RF00005 URS000041AF00_83332 35064151 0030533 0006412 83332 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))..... Mtb 70SIC in complex with MtbEttA at Trans_R1 state; initiator tRNA (Met) 7mt2 y 77 2.76 RF00005 URS000041AF00_562 35064151 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))..... Mtb 70S initiation complex; initiator tRNA (Met) 7mt3 y 77 2.8 RF00005 URS000041AF00_562 35064151 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))..... Mtb 70S with P/E tRNA; tRNA (Met) 7mt7 x 77 2.71 RF00005 URS000041AF00_562 35064151 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).......(((..]....)))..))))))..... Mtb 70S with P and E site tRNAs; tRNA (Met) 7mt7 y 77 2.71 RF00005 URS000041AF00_562 35064151 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Mtb 70S with P and E site tRNAs; tRNA (Met) 7n1p Pt 76 2.33 RF00005 URS000042DDAB_83333 34234344 0030533 0006412 83333 gggucguuagcucagnnggnagagcaguugacunuunaucaauuggncgcaggnucgaauccugcacgacccacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).((((.........)))).....(((((..]....)))))))))))).... Elongating 70S ribosome complex in a classical pre-translocation (PRE-C) conformation; tRNA 7n1p Dt 76 2.33 RF00005 URS00005AA258_83333 34234344 0030533 0006412 83333 gcccgganagcucagncgguagagcaggggauugaanauccccgunnccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).((((.........)))).....(((((..]....)))))))))))).... Elongating 70S ribosome complex in a classical pre-translocation (PRE-C) conformation; tRNA 7n2c Pt 76 2.72 RF00005 URS000042DDAB_562 34234344 0030533 0006412 562 gggucguuagcucagnnggnagagcaguugacunuunaucaauuggncgcaggnucgaauccugcacgacccacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).((((.........)))).....(((((..]....)))))))))))).... Elongating 70S ribosome complex in a fusidic acid-stalled intermediate state of translocation bound to EF-G(GDP) (INT2); Chains: Pt 7n2c Dt 76 2.72 RF00005 URS0002311A2F_562 34234344 0030533 0006412 562 gcccgganagcucaguugggagagcaggggauugaanauccccgunnccuugguucgaucccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).((((.........)))).....(((((..]....)))))))))))).... Elongating 70S ribosome complex in a fusidic acid-stalled intermediate state of translocation bound to EF-G(GDP) (INT2); tRNA 7n2u Pt 76 2.53 RF00005 URS000042DDAB_83333 34234344 0030533 0006412 83333 gggucguuagcucagnngguagagcaguugacunuunaucaauugnncgcaggnucgaauccugcacgacccacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).((((.........)))).....(((((..]....)))))))))))).... Elongating 70S ribosome complex in a hybrid-H1 pre-translocation (PRE-H1) conformation; tRNA 7n2u Dt 76 2.53 RF00005 URS0002311A2F_83333 34234344 0030533 0006412 83333 gcccgganagcucaguugggagagcaggggauugaanauccccgunnccuugguucgaucccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).((((.........)))).....(((((..]....)))))))))))).... Elongating 70S ribosome complex in a hybrid-H1 pre-translocation (PRE-H1) conformation; tRNA 7n2v Pt 76 2.54 RF00005 URS00023119DE_83333 34234344 0030533 0006412 83333 gggucguuagcucaguugguagagcaguugacunuunaucaauugnncgcagguucgaauccugcacgacccacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..(((......[...)))(((((.........)))))....(((((..]....)))))))))))).... Elongating 70S ribosome complex in a spectinomycin-stalled intermediate state of translocation bound to EF-G in an active, GTP conformation (INT1); tRNA 7n2v Dt 76 2.54 RF00005 URS000231196E_83333 34234344 0030533 0006412 83333 gcccgganagcucaguugggagagcaggggauugaanauccccgunnccuugguucgaucccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).((((.........)))).....(((((..]....)))))))))))).... Elongating 70S ribosome complex in a spectinomycin-stalled intermediate state of translocation bound to EF-G in an active, GTP conformation (INT1); tRNA 7n30 Pt 76 2.66 RF00005 URS000042DDAB_83333 34234344 0030533 0006412 83333 gggucguuagcucagnnggnagagcaguugacunuunaucaauugnncgcaggnucgaauccugcacgacccacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<..<.......>..>>>>>>>>>.... (((((((..((((..[..[..)))).((((.........)))).....(...(..]..].)...)))))))).... Elongating 70S ribosome complex in a hybrid-H2* pre-translocation (PRE-H2*) conformation; tRNA 7n30 Dt 76 2.66 RF00005 URS0002311A2F_83333 34234344 0030533 0006412 83333 gcccgganagcucaguugggagagcaggggauugaanauccccgunnccuugguucgaucccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).((((.........)))).....(((((..]....)))))))))))).... Elongating 70S ribosome complex in a hybrid-H2* pre-translocation (PRE-H2*) conformation; tRNA 7n31 Pt 76 2.69 RF00005 URS000042DDAB_83333 34234344 0030533 0006412 83333 gggucguuagcucagnngguagagcaguugacunuunaucaauugnncgcaggnucgaauccugcacgacccacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).((((.........)))).....(((((..]....)))))))))))).... Elongating 70S ribosome complex in a post-translocation (POST) conformation; tRNA 7n31 Dt 76 2.69 RF00005 URS00005AA258_83333 34234344 0030533 0006412 83333 gcccgganagcucagncgguagagcaggggauugaanauccccgunnccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).((((.........)))).....(((((..]....)))))))))))).... Elongating 70S ribosome complex in a post-translocation (POST) conformation; tRNA 7nbu V 77 3.11 RF00005 URS00001BBAFC_83333 35552387 0030533 0006412 83333 cgcggggnggagcagccuggnagcucgucgggcucauaacccgaagaucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Structure of the HigB1 toxin mutant K95A from Mycobacterium tuberculosis (Rv1955) and its target, the cspA mRNA, on the E. coli Ribosome.; P-site fMet-tRNA(fMet) 7nfx 1 249 3.2 RF00017,RF01856 URS0002311994_9606 34020957 0006617 0005786 9606 gccgggcgcgguggcgcgcgccuguagucccagcuacucgggaggcugaggcaggaggaucgcuucgcuaugccgaucggguguccgcacuaaguucggcaucaauauggugaccucccgggagcgggggaccaccagguugccuaaggaggggugaaccggcccaggucggaaacggagcaggucaaaacucccgugcugaucaguagugggaucgcgccugugaauagccuagcgagaccccgucuc <<<<<<<<<<..(((.>>>>>>>....<<<<.)))....>>>>>>>.<<<<<.<<.<..<<<<<..<<<<.......<.<..<<<<.<<<<<.<.<<<<<<<<<<<.<<<<<..<<<<<<....>>>>>>..>>>>>.>>>>........<<<<<.....<<<.<...<<<....>>>....>>>>...>>>>>.>>>>>>>.>..>>>>>>>...>>...>>....>>>>..>>>>>..>>>.>>>>> ((((((((((..[[[.)))))))....((((.]]..]..))))))).(((.(.((.(..(((((..((.(.........((.(.((.((...((.((.((((((((..((((..((((((....))))))..))))..))))......(.(((((......(.(....(((....))).....).)...)))))))))).)).)..)..))))....)..)).....).).).)))))..))).).))) Mammalian ribosome nascent chain complex with SRP and SRP receptor in early state A; SRP RNA 7SL 7nhk D 74 2.9 RF00005 URS00023119F2_1351 34117249 0030533 0006412 1351 cgcgggguggagcagucagguagcucgucgggcucauaacccgaaggucguagguucaaauccugcccccgcaa .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>.. .((((((..((((......[..)))).(((((.......))))).....(((((..]....))))))))))).. LsaA, an antibiotic resistance ABCF, in complex with 70S ribosome from Enterococcus faecalis; tRNA-fMETi 7nhl D 73 3.1 RF00005 URS000231199A_93061 34117249 0030533 0006412 93061 gcgggguggagcagucagguagcucgucgggcucauaacccgaaggucguagguucaaauccugcccccgcaa <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>.. ((((((..((((......[..)))).(((((.......))))).....(((((..]....))))))))))).. VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureus; P-tRNA fMet 7nhm D 77 3.1 RF00005 URS0002311A33_93061 34117249 0030533 0006412 93061 cgcgggauggagcagucagguagcucgucgggcucauaacccgaaggucggugguucaaauccgccucccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....((.((..]....)).))))))))..... 70S ribosome from Staphylococcus aureus; tRNA-fMet 7nhn D 74 2.9 RF00005 URS0002311A03_169963 34117249 0030533 0006412 169963 gcgggguggagcagucugguagcucgucgggcucauaacccgaaggucguagguucaaauccugcccccgcaac <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))... VgaL, an antibiotic resistance ABCF, in complex with 70S ribosome from Listeria monocytogenes; tRNA-fMet 7nqh BB 67 3.5 RF00005 URS0000D77942_9823 33878294 0030533 0006412 9823 guuaauguagcuuaaucaaagcaaggcacugaaaaugccuagaugagccucagcuccauaaacacca <<<.<<<..<<<.......>>>.<<<<<.......>>>>>....<<<<....>>>>>>>.>>>.... (((.(((..(((.......))).(((((.......)))))....((((....))))))).))).... 55S mammalian mitochondrial ribosome with mtRF1a and P-site tRNAMet; tRNA(Phe) in LSU 7nql BB 67 3.4 RF00005 URS0000D77942_9823 33878294 0030533 0006412 9823 guuaauguagcuuaaucaaagcaaggcacugaaaaugccuagaugagccucagcuccauaaacacca <<<.<<<..<<<.......>>>.<<<<<.......>>>>>....<<<<....>>>>>>>.>>>.... (((.(((..(((.......))).(((((.......)))))....((((....))))))).))).... 55S mammalian mitochondrial ribosome with ICT1 and P site tRNAMet; CP tRNAPhe 7nrc Sm 76 3.9 RF00005 URS000042DDAB_559292 33790014 0030533 0006412 559292 gggucguuagcucaguugguagagcaguugacuuuuaaucaauuggucgcagguucgaauccugcacgacccacca <<<<<<<..<<<<........>>>><<<<<<.......>>>>>>....<<<<<.......>>>>>>>>>>>>.... (((((((..((((........))))(.((((.......)))).)....(((((.......)))))))))))).... Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A; tRNA (76-MER) 7nrc Sn 75 3.9 RF00005 URS00021ED942_559292 33790014 0030533 0006412 559292 agcgccgugacgcaguggaagcgcgcagggcucauaacccugauguccucggaucgaaaccgagcggcgcuacca <<<<<<<...<<<.......>>>..<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((...(((....[..)))..(((((.......))))).....(((((..]....)))))))))))).... Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A; tRNA (75-MER) 7nrd Sn 75 4.36 RF00005 URS00021ED942_559292 33790014 0030533 0006412 559292 agcgccgugacgcaguggaagcgcgcagggcucauaacccugauguccucggaucgaaaccgagcggcgcuacca <<<<<<<...<<<.......>>>.<<<<<<.......>>>>>.>...<<<<<.......>>>>>>>>>>>>.... (((((((...(((....[..)))..(((((.......))))).....(((((..]....)))))))))))).... Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA; tRNA (75-MER) 7nrd Sm 77 4.36 RF00005 URS000041AF00_559292 33790014 0030533 0006412 559292 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(.(((..]....))).)))))))..... Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA; tRNA (77-MER) 7nsh BB 67 3.2 RF00005 URS0000D77942_9823 33878294 0030533 0006412 9823 guuaauguagcuuaaucaaagcaaggcacugaaaaugccuagaugagccucagcuccauaaacacca <<<.<<<..<<<<.....>>>>.<<<<<.......>>>>>....<<<<....>>>>>>>.>>>.... (((.(((..(((.......))).(((((.......)))))....((((....))))))).))).... 39S mammalian mitochondrial large ribosomal subunit with mtRRF (post) and mtEFG2; CP tRNAPhe 7nsi BB 67 4.6 RF00005 URS0000D77942_9823 33878294 0030533 0006412 9823 guuaauguagcuuaaucaaagcaaggcacugaaaaugccuagaugagccucagcuccauaaacacca <<<.<<<..<<<.......>>>.<<<<<.......>>>>>....<<<<....>>>>>>>.>>>.... (((.(((..(((.......))).(((((.......)))))....((((.(.)))))))).))).... 55S mammalian mitochondrial ribosome with mtRRF (pre) and tRNA(P/E); CP tRNAPhe 7nsj BB 67 3.9 RF00005 URS0000D77942_9823 33878294 0030533 0006412 9823 guuaauguagcuuaaucaaagcaaggcacugaaaaugccuagaugagccucagcuccauaaacacca <<<.<<<..<<<.......>>>.<<<<<.......>>>>>....<<<<....>>>>>>>.>>>.... (((.(((..(((.......))).(((((.......)))))....((((.(.)))))))).))).... 55S mammalian mitochondrial ribosome with tRNA(P/P) and tRNA(E*); CP tRNAPhe 7nso 8 87 2.9 RF00005 URS00004630EA_562 34294725 0030533 0006412 562 gccgaggugguggaauugguagacacgcuaccuugaggugguagugcccaauagggcuuacggguucaagucccguccucgguacca <<<<<<<..<<<...........>>><<<<<<.......>>>>>><<<<....>>>>..<<<<<.......>>>>>>>>>>>>.... (((((((..(((......[....))).(((((.......))))).((((....))))..(((((..]....)))))))))))).... Structure of ErmDL-Erythromycin-stalled 70S E. coli ribosomal complex with P-tRNA; PtRNA-Leu 7nsp 8 87 3.5 RF00005 URS00004630EA_562 34294725 0030533 0006412 562 gccgaggugguggaauugguagacacgcuaccuugaggugguagugcccaauagggcuuacggguucaagucccguccucgguacca <<<<<<<..<<<...........>>><<<<<<.......>>>>>><<<<....>>>>..<<<<<.......>>>>>>>>>>>>.... (((((((..(((......[....)))((((((.......))))))((((....))))..(((((..]....)))))))))))).... Structure of ErmDL-Erythromycin-stalled 70S E. coli ribosomal complex with A and P-tRNA; P-tRNA (leu) 7nsp v 77 3.5 RF00005 URS0000349C05_562 34294725 0030533 0006412 562 gcauccguagcucagcuggauagaguacucggcuacgaaccgagcggucggagguucgaauccucccggaugcacca <<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((...(((.........)))..(((((.......))))).....(((((.......)))))))))))).... Structure of ErmDL-Erythromycin-stalled 70S E. coli ribosomal complex with A and P-tRNA; A-tRNA (Arg) 7nsq 8 87 3.1 RF00005 URS00004630EA_562 34294725 0030533 0006412 562 gccgaggugguggaauugguagacacgcuaccuugaggugguagugcccaauagggcuuacggguucaagucccguccucgguacca <<<<<<<..<<<...........>>><<<<<<.......>>>>>><<<<....>>>>..<<<<<.......>>>>>>>>>>>>.... (((((((..(((......[....)))((((((.......))))))((((....))))..(((((..]....)))))))))))).... Structure of ErmDL-Telithromycin-stalled 70S E. coli ribosomal complex with A and P-tRNA; PtRNA (Leu) 7nsq v 77 3.1 RF00005 URS0000349C05_562 34294725 0030533 0006412 562 gcauccguagcucagcuggauagaguacucggcuacgaaccgagcggucggagguucgaauccucccggaugcacca <<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))).... Structure of ErmDL-Telithromycin-stalled 70S E. coli ribosomal complex with A and P-tRNA; AtRNA (Arg) 7nwg 33 75 3.8 RF00005 URS000231197C_9986 34157102 0030533 0006412 9986 gcccggauagcucagcguguagagcaucagacuuuuaaucugaggguccaggguucaagucccuguucgggcgcc <<<.<<.....<.........>......<.........>...........<<.......>>....>>.>>.>... (((..(............................................(.........)....)..)).)... Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.; P/E-Site tRNA 7nwt 5 76 2.66 RF00005 URS00023119AC_562 0030533 0006412 562 gcggggungagcagccuggnagcucgucgggnucauaacccgaagaucgucggnucaaauccggcccccgcaaccn <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Initiated 70S ribosome in complex with 2A protein from encephalomyocarditis virus (EMCV); fMet-NH-tRNA(fMet) 7nww z 88 3.05 RF00005 URS0001DD2ACB_562 34994471 0030533 0006412 562 ggugagguguccgagungcugaaggagcacgccuggaaaguguguauacggcaacguaucgggggnucguaucccccccucaccgcca <<<<<<<..<<<...........>>><<<<<<.......>>>>>><<<<<....>>>>>.<<<<<.......>>>>>>>>>>>>.... (((((((..(((.....[.....)))(((((.........))))).((((....))))..(((((..]....)))))))))))).... CspA-27 cotranslational folding intermediate 1; tRNA-Ser 7o19 B8 77 2.9 RF00005 URS00001DEEBE_83333 34504068 0030533 0006412 83333 cggugauuggcgcagccugguagcgcacuucguucgggacgaaggggucggagguucgaauccucuaucaccgacca <<<<<<<..<<<<.........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))).... Cryo-EM structure of an Escherichia coli TnaC-ribosome complex stalled in response to L-tryptophan; P-site tRNA-Pro 7o1a B8 77 2.4 RF00005 URS00001DEEBE_83333 34504068 0030533 0006412 83333 cggugauuggcgcagccugguagcgcacuucguucggnacgaagggnucggagguucgaauccucuaucaccgacca <<<<<<<..<<<<.........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))).... Cryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome complex stalled in response to L-tryptophan; P-site tRNA-Pro 7o1c B8 77 2.6 RF00005 URS00001DEEBE_83333 34504068 0030533 0006412 83333 cggugauuggcgcagccugguagcgcacuucguucgggacgaaggggucggagguucgaauccucuaucaccgacca <<<<<<<..<<<<.........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))).... Cryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome-RF2 complex stalled in response to L-tryptophan; P-site tRNA-Pro 7o5b U 77 3.33 RF00005 URS00002C7A07_224308 35217658 0030533 0006412 224308 gguccgguaguucaguugguuagaaugccugccugucacgcaggaggucgcggguucgagucccguccggaccgcca <<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.........)))).(((((.......)))))......(((.........))).))))))).... Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound; tRNA 7o5b W 266 3.33 RF01854 URS000086853B_224308 35217658 0006617 0048501 224308 gccgugcuaagcggggagguagcggugcccuguaccugcaauccgcucuagcagggccgaaucccuucucgagguucguuuacuuuaaggccugccuuaaguaagugguguugacguuuggguccugcgcaaugggaauucaugaaccaugucagguccggaaggaagcagcauuaagugaaaccucucaugugccgcaggguugccugggccgagcuaacugcuuaaguaacgcuaggguagcgaaucgacagaaggugcacggu ..<<<<<...<<.<<<......(((..>>>....<<<<<...))).....>>>>>>>......<<<...............<<<<.......<<......<<....<<<.......<.......<<<<<<<.<<<<..<<<<<.............<<<....>>>...........>>>.>>...>>>>..>>.>>>>>..........>....>>>....>>.....>>......>>>>..............>>>.>>>>>.. .((((((...((.(((......[[...)))....(((((....]].....)))))))......(((....(.(........((((....(.((.(..(..(...((((....(..(.....(.((((((((.((.(..(((((.....(........((....)).........)..))).))...).))..)).))))).)....)....))...))).)..)..).).)..))..)))).......)..)...))).)))))). Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound; SRP RNA (266-MER) 7o7y AT 76 2.2 RF00005 URS00001CE4E0_9913 34029205 0030533 0006412 9913 gccgaaauancucngnngggagagcnuuaganunaanaucuaaagnucncuggnucgnucccggguuucggcacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..))))...((.........)).......(((((..]....)))))))))))).... Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution); P-site Phe-tRNA(Phe) 7o7z AH 95 2.4 RF00507 URS0002617719_2697049 34029205 0075523 2697049 gcacaaucguuuuuauaaggguuugcgguguaagugcagcccgucuuacaccgugcggcacaggcacuaguacugaugucguauacagggcuuuu .........................<<<<<<<<<...(((((..>>>>>>>>>.<<<<<<<<<<......>.>>>.>>>>>>.....)))))... .........................(((((((((...[[[[[..)))))))))((((((((((((....)).))).)))))))....]]]]]... Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot); mRNA containing SARS-CoV-2 sequence 7o7z AT 76 2.4 RF00005 URS00001CE4E0_9913 34029205 0030533 0006412 9913 gccgaaauancucngnngggagagcnuuaganunaanaucuaaagnucncuggnucgnucccggguuucggcacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..))))...((.........)).......(((((..]....)))))))))))).... Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot); P-site Phe-tRNA(Phe) 7o80 AH 24 2.9 RF00507 URS0002617731_2697049 34029205 0075523 2697049 caaucguuuuuauaaggguuugcg ........................ ........................ Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site; mRNA containing SARS-CoV-2 sequence 7o80 AT 86 2.9 RF00005 URS00023119CA_9913 34029205 0030533 0006412 9913 accgggauggccgagugguuaaggcguuggacuuaagauccaaugggcuagugcccgcgugggnucgaaccccacucucgguacca <<<<<<<..<<<..........>>><<<<<<.......>>>>>>.<<<....>>>...<<<<<.......>>>>>>>>>>>>.... ((((.((..(((.....[....))).(((((.......)))))..(((....)))...(((((..]....))))))).)))).... Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site; P-site Leu-tRNA(Leu) 7o81 AH 10 3.1 RF00507 URS0002617731_2697049 34029205 0075523 2697049 gaacccaugc .......... .......... Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot; mRNA containing SARS-CoV-2 sequence 7o81 AJ 76 3.1 RF00005 URS0002311A15_9913 34029205 0030533 0006412 9913 gccuucuuagcgcaguaggcagcgcgucagucucauaaucugaagguccugagnucgagccucagagagggcacca <<<<<<<..<<<<........>>>>.<<<<.........>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).((((.........)))).....(((((..]....)))))))))))).... Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot; A-site Met-tRNA(Met) 7o81 AT 75 3.1 RF00005 URS0000416117_9913 34029205 0030533 0006412 9913 ggcucguuggucuagggguaugauucucgcuuagggugcgagaggucccgggnucaaaucccggacgagccccca <<<<<<<...<<.........>><<<<<<<.......>>>>>>>...<<<<<.......>>>>>>>>>>>>.... (((((((..(((.....[...)))((((((.......))))))....(((((..]....)))))))))))).... Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot; P-site tRNA(Pro) 7obq 1 165 3.9 RF00017,RF01856 URS00023119B1_9615 34260909 0006617 0005786 9615 cuaugccgaucggguguccgcacuaaguucggcaucaauauggugaccucccgggagcgggggaccaccagguugccuaaggaggggugaaccggcccaggucggaaacggagcaggucaaaacucccgugcugaucaguagugggaucgcgccugugaauagca .<.........<<<<<<<<.<<<<<.<.<<<<<<<<<<<.<<<<<..<<<<<<....>>>>>>..>>>>>.>>>>........<<<<<.....<<<<..<.<<<....>>>..>.>>>>...>>>>>.>>>>>>>.>..>>>>>>>...>>>>>>.......>.. ............((.((((.(.(((.(.(((((((((((.(((((....((((....))))....))))).))))......(.((.((.....((((....(((....)))....))))...)).)))))))))).)..))).)))...)).))........... SRP-SR at the distal site conformation; SRP RNA 7obr 1 249 2.8 RF00017,RF01856 URS0002311977_9615 34260909 0006617 0005786 9615 gccgggcgcgguggcgcgcgccuguagucccagcuacucgggaggcugaggcaggaggaucgcuucgcuaugccgaucggguguccgcacuaaguucggcaucaauauggugaccucccgggagcgggggaccaccagguugccuaaggaggggugaaccggcccaggucggaaacggagcaggucaaaacucccgugcugaucaguagugggaucgcgccugugaauagccuagcgagaccccgucuc <<<<<<<<<<..(((.>>>>>>>....<<<<.)))....>>>>>>>.<<<<<.<<.<..<<<<<..<<<<.......<.<.<<<<<.<<<<<.<.<<<<<<<<<<<.<<<<<..<<<<<<....>>>>>>..>>>>>.>>>>........<<<<<.....<<<.<.<.<<<....>>>..>.>>>>...>>>>>.>>>>>>>.>..>>>>>>>...>>>..>>....>>>>..>>>>>..>>>.>>>>> ((((((((((..[[[.)))))))....((((.]]..]..))))))).(((.(.((.(..(((((..((.(.........((.(.((.((((..(.(((((((((((..((((..((((((....))))))..))))..))))......(.(((((......(.(....(((....))).....).)...))))))))))))).)...))))))....)..)).....).).).)))))..))).).))) RNC-SRP early complex; SRP RNA 7oi8 z 73 3.5 RF00005 URS000231196C_9606 34315873 0030533 0006412 9606 aguuauguagcuuaaauuaucaaagcaaggcacugaaaaugccuagaugagccucacagcuccauuaacacca (<<<<<<..................<<............>>.....................>>)>>>>.... [((((((....(.........)...((............)).......(..........)..))])))).... Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3A; mitochondrial tRNA 7oia z 73 3.2 RF00005 URS000231196C_9606 34315873 0030533 0006412 9606 aguuauguagcuuaaauuaucaaagcaaggcacugaaaaugccuagaugagccucacagcuccauuaacacca (<<<<<<..................<<............>>.....................>>)>>>>.... [((((((....(.........)...((............)).......(..........)..))])))).... Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3C; mitochondrial tRNA 7oid z 73 3.7 RF00005 URS000231196C_9606 34315873 0030533 0006412 9606 aguuauguagcuuaaauuaucaaagcaaggcacugaaaaugccuagaugagccucacagcuccauuaacacca (<<<<<<..................<<............>>.....................>>)>>>>.... [((((((.................(((............)))......(..........)..))])))).... Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 5A; mitochondrial tRNA 7oif z 88 3.0 RF00005 URS0001DD2ACB_562 34994471 0030533 0006412 562 ggugagguguccgagungcugaaggagcacgccuggaaaguguguauacggcaacguaucgggggnucguaucccccccucaccgcca <<<<<<<..<<<...........>>><<<<<<.......>>>>>><<<<<....>>>>>.<<<<<.......>>>>>>>>>>>>.... (((((((..(((.....[.....))).((((.........))))..((((....))))..(((((..]....)))))))))))).... CspA-27 cotranslational folding intermediate 2; tRNA-Ser 7oig z 88 3.2 RF00005 URS0001DD2ACB_562 34994471 0030533 0006412 562 ggugagguguccgagungcugaaggagcacgccuggaaaguguguauacggcaacguaucgggggnucguaucccccccucaccgcca <<<<<<<..<<<...........>>><<<<<<.......>>>>>><<.<<....>>.>>.<<<<<.......>>>>>>>>>>>>.... (((((((..(((.....[.....)))(((((.........))))).(((.(...))))..(((((..]....)))))))))))).... CspA-27 cotranslational folding intermediate 3; tRNA-Ser 7oii z 85 3.0 RF00005 URS0000036214_562 34994471 0030533 0006412 562 gcgggagnggcgaaauuggnagacgcaccagauuuaggnncnggcgccgcaaggngngcgagnncaagncncgccncccgcacca <<<<<<<..<<<...........>>>.<<<<<.......>>>>>.<<<....>>>..<<<<<.......>>>>>>>>>>>>.... (((((((..(((......[....))).((((.........))))..((....))...(((((..]....)))))))))))).... CspA-70 cotranslational folding intermediate 2; tRNA-Leu 7oiz V 75 2.9 RF00005 URS00023119E1_83333 34403461 0030533 0006412 83333 cggcacguagcgcagcgguagcgcaccgucauggggugucgggggucggaggnucaaauccucucgugccgacca <<<<<<<..<<<<.......>>>>.<<<.<<.....>>.>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((....[..)))).(((.(.......).))).....(((((..]....)))))))))))).... Cryo-EM structure of 70S ribosome stalled with TnaC peptide; tRNA 7oj0 V 75 3.5 RF00005 URS00023119E1_83333 34403461 0030533 0006412 83333 cggcacguagcgcagcgguagcgcaccgucauggggugucgggggucggaggnucaaauccucucgugccgacca <<<<<<<..<<<<.......>>>>.<<<.<<.....>>.>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((....[..)))).(((.(.......).))).....(((((..]....)))))))))))).... Cryo-EM structure of 70S ribosome stalled with TnaC peptide and RF2; tRNA 7okx P 13 3.3 RF00250 URS00023119D7_672471 34265249 0035195 0016442 672471 agggaacccacua ............. ............. Structure of active transcription elongation complex Pol II-DSIF (SPT5-KOW5)-ELL2-EAF1 (composite structure); RNA 7oky P 13 4.14 RF00250 URS00023119D7_672471 34265249 0035195 0016442 672471 agggaacccacua ............. ............. Structure of active transcription elongation complex Pol II-DSIF-ELL2-EAF1(composite structure); RNA 7ol0 P 13 3.0 RF00250 URS00023119D7_672471 34265249 0035195 0016442 672471 agggaacccacua ............. ............. Structure of active transcription elongation complex Pol II-DSIF (SPT5-KOW5); RNA 7old 5 75 3.0 RF00005 URS0000E60BA3_759272 35079002 0030533 0006412 759272 uccgauauagcguaacggcuaucacaucacgcuuucaccguggagaccgggguucgacuccccguaucggagcca <<<<<<<..<..............>.<<<<<.......>>>>>....<<<<<.......>>>>>>>>>>>>.... ((((((...(..............)..((((.......)))).....((((.........)))).)))))).... Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state; pe/E tRNA 7onb H 32 3.1 RF00004 URS00003EE995_9606 34301950 0045131 0000348 0005686 9606 uaguaucuguucuuaucaguuuaauaucugau ..............<<<<<.<....>.>>>>> ..............(((((........))))) Structure of the U2 5' module of the A3'-SSA complex; RNU2 7onu T 66 3.0 RF00005 URS0002311975_9606 34489609 0030533 0006412 9606 gagguaaaauggcugagaagcauuggacuguaaaucuaaagacagggguuaggccucuuuuuacca ..<<<<<<<..<<<....>>>.<<<<<.......>>>>>....<<<<<.....>>>>>>>>>>>>. ..(((((((..(((....))).(((((.......)))))....(((((.....)))))))))))). Structure of human mitochondrial RNase P in complex with mitochondrial pre-tRNA-Tyr; Mitochondrial Precursor tRNA-Tyr 7ope 2 70 3.2 RF00005 URS00002F180C_224308 34255840 0030533 0006412 224308 ggggccuuagcucagggagagcgccugcucacgcaggaggucagcgguucgaucccgcuaggcuccacca <<<<<<<..<<<<.....>>>>.<<<<<....>>>>>.....<<<<<.......>>>>>>>>>>>>.... ((.((((..((((.....)))).(((((....))))).....(((((.......))))))))).)).... RqcH DR variant bound to 50S-peptidyl-tRNA-RqcP RQC complex (rigid body refinement); tRNA-Ala-UGC 7oqb 2 143 9.0 RF00004 URS000023C730_4932 34349264 0045131 0000348 0005686 4932 guguaguaucuguucuuuucaguguaacaacugaaaugaccucgaggcucauacacauuuuuuggcaggacgggaagaggagacgucgcgacccucgcagagucguucuugacuuggucgcuugauguuucuucuucccguuc .................<<<<<<......>>>>>><<<<<<<..>>>.>>>>................<<<<<<<<<<.<<<<<<<<<<<<.<<.....<<<<<<....>>>>>>>>>>>>..>>>>>>>>.>>>>>>>>>>. ..................(((((......))))).(((((((()))).))))...............(.(((((((((.((((((((((((.((......(((((....))))).))))))..)))))))).))))))))).) The U2 part of Saccharomyces cerevisiae spliceosomal pre-A complex (delta BS-A ACT1); U2 snRNA 7oqc 1 558 4.1 RF00488 URS000012D749_4932 34349264 0030627 0000395 0005685 4932 auacuuaccuuaagauaucagaggagaguccuacugaucaaacaugcgcuuccaauaguagaaggacguuaagcauuuaucauugaacuauaauuguucauugaagucauugaugcaaacuccuuggucacacacacauacggcgcggaaggcguguuugcugacguuuccauucccuuguuucaaucauugguuaaucccuugauuccuuuggggauuuuuggguuaaacugauuuuuggggcccuuuguuucuucugccuggagaaguuugacaccaaauucaaauugguguuaggggagcuggggccuuucaaaagagagcuuuguagaggcauucuuuuugacuacuuuucucuagcgugccauuuuaguuuuugacggcagauucgaaugaacuuaaguuuaugaugaagguauggcuguugagauuauuuggucgggauuguaguuugaagaugugcucuuuugagcagucucaacuuugcucguucccguuaugggaaaaauuuuggaaggucuugguaggaacggguggaucuuauaauuuuugauuuau ...........<<<<.<<<<<<<<<...>>>>.>>>>><<<<<<<<<.<<<<<........<<<<<.<<<..<<<<.<.<<<.<<<<<.......>>>>>.>>>.......>>>>>.>>>>>>>>.....................>>>>>>>>>>>>>><<<.<<<<.<<..<<<<<.<<<<<<<..<<<<<<<.<.<<<..<<<<<<<..>>>>>>>...>>>.>.>>>>>>>..>>>>>>>((.......<<<<<....))>>>>>...<<<<<<<<.......>>>>>>>>.>>>>><<<<<<<<<<<<<<<<<..<<<<...<<.<<<<...<<<<<..<<<<<<..<<<<.......<<<<...<<<<<<<.<<<<<<...<<<<.<<<<<<....>>>>>>..>>>>......>>>>>>>>>>>>>..>>>>.>>>>..>>>>>>.>>>>>..<<<<<....>>>>>.>>>>.>>...>>>>.<<<<<<...>>>>>>...>>>>>>>>>>>>>>>>>.>>>>>>..>>>.>>>>................ ...........((((((((((((((...)))).)))))(((((((((.(((((.[......(((((.(((..(((((...((.((((.........)))).))........))))).)))))))).(].................)))))))))))))))(((.((((.((..(((((((.(((((..(((.(((...(((..((((((....))))))...)))...))).)))..))))).)[[.......(((((....]])))))...((((((((.(....)))))))))))))))((((.(.((((.(((((..((((...((.(((((..(((((..((((((..((((.(...).((((...((.(((..(((.((...((((.((((((....))))))..))))......)).))).))).))..)))).))))..)))))).)))))..(((((....)))))))))).))...)))).((((((...))))))...))))).)))).).)))).))))))..))))))))................ The U1 part of Saccharomyces cerevisiae spliceosomal pre-A complex (delta BS-A ACT1); U1 snRNA 7oqe 1 558 5.9 RF00488 URS000012D749_4932 34349264 0030627 0000395 0005685 4932 auacuuaccuuaagauaucagaggagaguccuacugaucaaacaugcgcuuccaauaguagaaggacguuaagcauuuaucauugaacuauaauuguucauugaagucauugaugcaaacuccuuggucacacacacauacggcgcggaaggcguguuugcugacguuuccauucccuuguuucaaucauugguuaaucccuugauuccuuuggggauuuuuggguuaaacugauuuuuggggcccuuuguuucuucugccuggagaaguuugacaccaaauucaaauugguguuaggggagcuggggccuuucaaaagagagcuuuguagaggcauucuuuuugacuacuuuucucuagcgugccauuuuaguuuuugacggcagauucgaaugaacuuaaguuuaugaugaagguauggcuguugagauuauuuggucgggauuguaguuugaagaugugcucuuuugagcagucucaacuuugcucguucccguuaugggaaaaauuuuggaaggucuugguaggaacggguggaucuuauaauuuuugauuuau ...........<<<<.<<<<<<<<<...>>>>.>>>>><<<<<<<<<.<<<<<........<<<<<.<<<..<<<<.<.<<<.<<<<<.......>>>>>.>>>.......>>>>>.>>>>>>>>.....................>>>>>>>>>>>>>><<<.<<<<.<<..<<<<<.<<<<<<<..<<<<<<<.<.<<<..<<<<<<<..>>>>>>>...>>>.>.>>>>>>>..>>>>>>>((.......<<<<<....))>>>>>...<<<<<<<<.......>>>>>>>>.>>>>><<<<<<<<<<<<<<<<<..<<<<...<<.<<<<...<<<<<..<<<<<<..<<<<.......<<<<...<<<<<<<.<<<<<<...<<<<.<<<<<<....>>>>>>..>>>>......>>>>>>>>>>>>>..>>>>.>>>>..>>>>>>.>>>>>..<<<<<....>>>>>.>>>>.>>...>>>>.<<<<<<...>>>>>>...>>>>>>>>>>>>>>>>>.>>>>>>..>>>.>>>>................ ...........((((((((((((((...)))).)))))(((((((((.(((((.[......(((((.(((..(((((...((.((((.........)))).))........))))).)))))))).(].................)))))))))))))))(((.((((.((..(((((((.(((((..(((.(((...(((..((((((....))))))...)))...))).)))..))))).)[[.......(((((....]])))))...((((((((.(....)))))))))))))))((((.(.((((.((((...((((...((.(((((..(((((..((((((..((((.(...).((((...((.(((..(((.((...((((.((((((....))))))..))))......)).))).))).))..)))).))))..)))))).)))))..(((((....)))))))))).))...)))).((((((...))))))....)))).)))).).)))).))))))..))))))))................ Saccharomyces cerevisiae spliceosomal pre-A complex (delta BS-A ACT1); U1 snRNA 7oqe 2 143 5.9 RF00004 URS000023C730_4932 34349264 0045131 0000348 0005686 4932 guguaguaucuguucuuuucaguguaacaacugaaaugaccucgaggcucauacacauuuuuuggcaggacgggaagaggagacgucgcgacccucgcagagucguucuugacuuggucgcuugauguuucuucuucccguuc .................<<<<<<......>>>>>><<<<<<<..>>>.>>>>................<<<<<<<<<<.<<<<<<<<<<<<.<<.....<<<<<<....>>>>>>>>>>>>..>>>>>>>>.>>>>>>>>>>. ..................(((((......))))).(((((((()))).))))...............(.(((((((((.((((((((((((.((......(((((....))))).))))))..)))))))).))))))))).) Saccharomyces cerevisiae spliceosomal pre-A complex (delta BS-A ACT1); U2 snRNA 7osa PSIT 77 3.0 RF00005 URS000057545F_562 34853469 0030533 0006412 562 cgcgggguggagcagcccgguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))..... Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands; Psite tRNA-Phe 7osm ASIT 76 3.0 RF00005 URS00021CC982_4932 34853469 0030533 0006412 4932 gcccggauagcucagucgguagagcaggggauugaagauccccguguccuugguucgauuccgaguccgggcacca .<<<<<<..<<<..........>>>.<<<<<.......>>>>>......<<...........>.>>>>>>>..... .(((((...((.(........).)).((((.........)))).........(........)....)))))..... Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands; PHE tRNA 7osm PSIT 77 3.0 RF00005 URS000057545F_562 34853469 0030533 0006412 562 cgcgggguggagcagcccgguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>......<<<<.......>>>>.>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(.((...].....)).)))))))..... Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands; FMET tRNA 7ot5 z 85 2.9 RF00005 URS0000036214_562 34994471 0030533 0006412 562 gcgggagnggcgaaauuggnagacgcaccagauuuaggnncnggcgccgcaaggngngcgagnncaagncncgccncccgcacca <<<<<<<..<<<...........>>>.<<<<<.......>>>>>.<<<....>>>..<<<<<.......>>>>>>>>>>>>.... (((((((..(((......[....))).((((.........))))..((....))...(((((..]....)))))))))))).... CspA-70 cotranslational folding intermediate 1; tRNA-Leu 7p3k V 75 2.9 RF00005 URS00023119E1_83333 34403461 0030533 0006412 83333 cggcacguagcgcagcgguagcgcaccgucauggggugucgggggucggagguucaaauccucucgugccgacca <<<<<<<..<<<<.......>>>>.<<<.<<.....>>.>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((....[..)))).(((.(.......).))).....(((((..]....)))))))))))).... Cryo-EM structure of 70S ribosome stalled with TnaC peptide (control); tRNA 7p48 5 73 2.9 RF00005 URS00002ECE5B_1280 35137182 0030533 0006412 1280 gcgggauggagcaguucgguagcucgucgggcucauaacccgaaggucggugguucaaauccgccucccgcaa <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>.. ((((((..((((......[..)))).(((((.......))))).....(((((..]....))))))))))).. Staphylococcus aureus ribosome in complex with Sal(B); P-site tRNA 7p6z 7 76 3.5 RF00005 URS000054164D_272634 36171285 0030533 0006412 272634 ggucuuguagcucagucgguagagcaacggucugaagaaccgugugucggcaguucgauucugcccgagaccacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (.(((.(..((((........)))).(((((.......))))).....(((((.......)))))).))).).... Mycoplasma pneumoniae 70S ribosome in untreated cells; tRNA-Phe 7p7q D 76 2.4 RF00005 URS00023119F2_1351 35387982,30404935 0030533 0006412 1351 gcgggguggagcagucagguagcucgucgggcucauaacccgaaggucguagguucaaauccugcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... E. faecalis 70S ribosome bound by PoxtA-EQ2, high-resolution combined volume; fMet-tRNA 7p7r D 76 2.9 RF00005 URS00023119F2_226185 35387982,30404935 0030533 0006412 226185 gcgggguggagcagucagguagcucgucgggcucauaacccgaaggucguagguucaaauccugcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... PoxtA-EQ2 antibiotic resistance ABCF bound to E. faecalis 70S ribosome, state I; tRNA-fMet 7p7s D 76 3.0 RF00005 URS00023358BB_1351 35387982,30404935 0030533 0006412 1351 gcgggguggagcagucagguagcucgucgggcucauaacccgaaggucguagguucaaauccugcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... PoxtA-EQ2 antibiotic resistance ABCF bound to E. faecalis 70S ribosome, state II; tRNA-fMet 7p7t C 72 2.9 RF00005 URS00023358DD_562 35387982,30404935 0030533 0006412 562 gagccguuagcucaguggagcaucugacunuunaucagagggucacaggnucgagcccuguacggcucacca <<<<<<<..<<<<....>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((...[)))).((((.........)))).....(((((..]....)))))))))))).... PoxtA-EQ2 antibiotic resistance ABCF bound to E. faecalis 70S ribosome, state III; A-site tRNA 7p7t D 76 2.9 RF00005 URS00023119F2_1351 35387982,30404935 0030533 0006412 1351 gcgggguggagcagucagguagcucgucgggcucauaacccgaaggucguagguucaaauccugcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... PoxtA-EQ2 antibiotic resistance ABCF bound to E. faecalis 70S ribosome, state III; tRNA-fMet 7p7u D 77 3.1 RF00005 URS00023119F2_1351 35387982,30404935 0030533 0006412 1351 cgcgggguggagcagucagguagcucgucgggcucauaacccgaaggucguagguucaaauccugcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... E. faecalis 70S ribosome with P-tRNA, state IV; tRNA-fMet 7pah 7 76 9.5 RF00005 URS000054164D_272634 36171285 0030533 0006412 272634 ggucuuguagcucagucgguagagcaacggucugaagaaccgugugucggcaguucgauucugcccgagaccacca <<<<<<...<<<<........>>>>..<<<<.......>>>>......<<<<<.......>>>>>.>>>>>>.... (((.(.(..((((........))))..((((.......))))......(((((.......)))))).).))).... 70S ribosome with P- and E-site tRNAs in Mycoplasma pneumoniae cells; tRNA-Phe 7pah 8 76 9.5 RF00005 URS000054164D_272634 36171285 0030533 0006412 272634 ggucuuguagcucagucgguagagcaacggucugaagaaccgugugucggcaguucgauucugcccgagaccacca <<<<<<...<<<<........>>>>..<<<<.......>>>>......<<<<<.......>>>>>.>>>>>>.... (((.(.(..((((........))))..((((.......))))......(((((.......)))))).).))).... 70S ribosome with P- and E-site tRNAs in Mycoplasma pneumoniae cells; tRNA-Phe 7pai 7 76 6.7 RF00005 URS000054164D_272634 36171285,36171285 0030533 0006412 272634 ggucuuguagcucagucgguagagcaacggucugaagaaccgugugucggcaguucgauucugcccgagaccacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((.(..((((........))))..((((.......))))......(((((.......)))))).))))).... 70S ribosome with P-site tRNA in Mycoplasma pneumoniae cells; tRNA-Phe 7paj 6 76 7.3 RF00005 URS000054164D_272634 36171285 0030533 0006412 272634 ggucuuguagcucagucgguagagcaacggucugaagaaccgugugucggcaguucgauucugcccgagaccacca <<<<<<...<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>.>>>>>>.... (((((((..((((........))))..((((.......))))......(((((.......)))))))))))).... 70S ribosome with EF-Tu-tRNA, P- and E-site tRNAs in Mycoplasma pneumoniae cells; tRNA-Phe 7paj 7 76 7.3 RF00005 URS000054164D_272634 36171285 0030533 0006412 272634 ggucuuguagcucagucgguagagcaacggucugaagaaccgugugucggcaguucgauucugcccgagaccacca <<<<<<...<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>.>>>>>>.... (((((((..((((........))))..((((.......))))......(((((.......)))))))))))).... 70S ribosome with EF-Tu-tRNA, P- and E-site tRNAs in Mycoplasma pneumoniae cells; tRNA-Phe 7paj 8 76 7.3 RF00005 URS000054164D_272634 36171285 0030533 0006412 272634 ggucuuguagcucagucgguagagcaacggucugaagaaccgugugucggcaguucgauucugcccgagaccacca <<<<<<...<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>.>>>>>>.... (((((((..((((........))))..((((.......))))......(((((.......)))))))))))).... 70S ribosome with EF-Tu-tRNA, P- and E-site tRNAs in Mycoplasma pneumoniae cells; tRNA-Phe 7pak 6 76 5.3 RF00005 URS000054164D_272634 36171285,36171285 0030533 0006412 272634 ggucuuguagcucagucgguagagcaacggucugaagaaccgugugucggcaguucgauucugcccgagaccacca <<<<<<...<<<<........>>>><<<<<<.......>>>>>.>...<<<<<.......>>>>>.>>>>>>.... .(.((.(..(((((....[).))))(.((((.......))))..).....(((..]....)))..).))..).... 70S ribosome with EF-Tu-tRNA and P-site tRNA in Mycoplasma pneumoniae cells; tRNA-Phe 7pak 7 76 5.3 RF00005 URS000054164D_272634 36171285,36171285 0030533 0006412 272634 ggucuuguagcucagucgguagagcaacggucugaagaaccgugugucggcaguucgauucugcccgagaccacca <<<<<<...<<<<........>>>><<<<<<.......>>>>>.>...<<<<<.......>>>>>.>>>>>>.... .(.((.(..(((((....[).))))(.((((.......))))..).....(((..]....)))..).))..).... 70S ribosome with EF-Tu-tRNA and P-site tRNA in Mycoplasma pneumoniae cells; tRNA-Phe 7pal 6 76 4.7 RF00005 URS000054164D_272634 36171285 0030533 0006412 272634 ggucuuguagcucagucgguagagcaacggucugaagaaccgugugucggcaguucgauucugcccgagaccacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... .((((.(..((((........)))).(((((.......))))).....(((((.......)))))).))).).... 70S ribosome with A- and P-site tRNAs in Mycoplasma pneumoniae cells; tRNA-Phe 7pal 7 76 4.7 RF00005 URS000054164D_272634 36171285 0030533 0006412 272634 ggucuuguagcucagucgguagagcaacggucugaagaaccgugugucggcaguucgauucugcccgagaccacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... .((((.(..((((........)))).(((((.......))))).....(((((.......)))))).))).).... 70S ribosome with A- and P-site tRNAs in Mycoplasma pneumoniae cells; tRNA-Phe 7pam 6 76 6.8 RF00005 URS000054164D_272634 36171285 0030533 0006412 272634 ggucuuguagcucagucgguagagcaacggucugaagaaccgugugucggcaguucgauucugcccgagaccacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (.(((((..((((........))))..((((.......))))......(((((.......)))))))))).).... 70S ribosome with A*- and P/E-site tRNAs in Mycoplasma pneumoniae cells; tRNA-Phe 7pam 8 76 6.8 RF00005 URS000054164D_272634 36171285 0030533 0006412 272634 ggucuuguagcucagucgguagagcaacggucugaagaaccgugugucggcaguucgauucugcccgagaccacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (.(((((..((((........))))..((((.......))))......(((((.......)))))))))).).... 70S ribosome with A*- and P/E-site tRNAs in Mycoplasma pneumoniae cells; tRNA-Phe 7pan 7 76 9.7 RF00005 URS000054164D_272634 36171285 0030533 0006412 272634 ggucuuguagcucagucgguagagcaacggucugaagaaccgugugucggcaguucgauucugcccgagaccacca <<<<<<<..<<<<........>>>>..<<<<.......>>>>......<<<<<.......>>>>>>>>>>>>.... (((((((..((.(........).))..((((.......))))......(((((.......)))))))))))).... 70S ribosome with A/P- and P/E-site tRNAs in Mycoplasma pneumoniae cells; tRNA-Phe 7pan 8 76 9.7 RF00005 URS000054164D_272634 36171285 0030533 0006412 272634 ggucuuguagcucagucgguagagcaacggucugaagaaccgugugucggcaguucgauucugcccgagaccacca <<<<<<<..<<<<........>>>>..<<<<.......>>>>......<<<<<.......>>>>>>>>>>>>.... (((((((..((.(........).))..((((.......))))......(((((.......)))))))))))).... 70S ribosome with A/P- and P/E-site tRNAs in Mycoplasma pneumoniae cells; tRNA-Phe 7pao 6 76 7.0 RF00005 URS000054164D_272634 36171285 0030533 0006412 272634 ggucuuguagcucagucgguagagcaacggucugaagaaccgugugucggcaguucgauucugcccgagaccacca <<<<<<<..<<<<........>>>>..<<<<.......>>>>......<<<<<.......>>>>>>>>>>>>.... .(.((((..((((........))))..((((.......))))......(((((.......)))))))))..).... 70S ribosome with EF-G, A*- and P/E-site tRNAs in Mycoplasma pneumoniae cells; tRNA-Phe 7pao 8 76 7.0 RF00005 URS000054164D_272634 36171285 0030533 0006412 272634 ggucuuguagcucagucgguagagcaacggucugaagaaccgugugucggcaguucgauucugcccgagaccacca <<<<<<<..<<<<........>>>>..<<<<.......>>>>......<<<<<.......>>>>>>>>>>>>.... .(.((((..((((........))))..((((.......))))......(((((.......)))))))))..).... 70S ribosome with EF-G, A*- and P/E-site tRNAs in Mycoplasma pneumoniae cells; tRNA-Phe 7paq 7 76 8.9 RF00005 URS000054164D_272634 36171285 0030533 0006412 272634 ggucuuguagcucagucgguagagcaacggucugaagaaccgugugucggcaguucgauucugcccgagaccacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((.(........).))..((((.......))))......(((((.......)))))))))))).... 70S ribosome with EF-G, A/P- and P/E-site tRNAs in Mycoplasma pneumoniae cells; tRNA-Phe 7paq 8 76 8.9 RF00005 URS000054164D_272634 36171285 0030533 0006412 272634 ggucuuguagcucagucgguagagcaacggucugaagaaccgugugucggcaguucgauucugcccgagaccacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((.(........).))..((((.......))))......(((((.......)))))))))))).... 70S ribosome with EF-G, A/P- and P/E-site tRNAs in Mycoplasma pneumoniae cells; tRNA-Phe 7par 7 76 8.2 RF00005 URS000054164D_272634 36171285 0030533 0006412 272634 ggucuuguagcucagucgguagagcaacggucugaagaaccgugugucggcaguucgauucugcccgagaccacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... .((((((..((((........))))..((((.......))))......(((((.......)))))))))).).... 70S ribosome with EF-G, ap/P- and pe/E-site tRNAs in Mycoplasma pneumoniae cells; tRNA-Phe 7par 8 76 8.2 RF00005 URS000054164D_272634 36171285 0030533 0006412 272634 ggucuuguagcucagucgguagagcaacggucugaagaaccgugugucggcaguucgauucugcccgagaccacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... .((((((..((((........))))..((((.......))))......(((((.......)))))))))).).... 70S ribosome with EF-G, ap/P- and pe/E-site tRNAs in Mycoplasma pneumoniae cells; tRNA-Phe 7pas 8 73 16.0 RF00005 URS000054164D_272634 36171285 0030533 0006412 272634 ggucuuguagcucagucgguagagcaacggucugaagaaccgugugucggcaguucgauucugcccgagacca .....<...<<<..........>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>.>...... .(....(..((............))..((((.......)))).......((((.......)))).).....). 70S ribosome with P/E-site tRNA in Mycoplasma pneumoniae cells; tRNA-Phe 7ph9 7 76 8.7 RF00005 URS000054164D_272634 36171285 0030533 0006412 272634 ggucuuguagcucagucgguagagcaacggucugaagaaccgugugucggcaguucgauucugcccgagaccacca <.<..<...<<<<........>>>>..<<<<.......>>>>......<<<<<.......>>>>>.>..>>..... (((((((..((((........))))..((((.......))))......(((((.......)))))))))))).... 70S ribosome with P-site tRNA in chloramphenicol-treated Mycoplasma pneumoniae cells; tRNA-Phe 7pha 6 76 8.5 RF00005 URS000054164D_272634 36171285 0030533 0006412 272634 ggucuuguagcucagucgguagagcaacggucugaagaaccgugugucggcaguucgauucugcccgagaccacca <<<<.<<..<<<<........>>>>...<<<.......>>>.......<<<<<.......>>>>>>>.>>>>.... ((((..(..((.((.....).).))...(((.......))).......(.(((.......))).))..)))).... 70S ribosome with EF-Tu-tRNA and P-site tRNA in chloramphenicol-treated Mycoplasma pneumoniae cells; tRNA-Phe 7pha 7 76 8.5 RF00005 URS000054164D_272634 36171285 0030533 0006412 272634 ggucuuguagcucagucgguagagcaacggucugaagaaccgugugucggcaguucgauucugcccgagaccacca <<<<<<....<<<........>>>...<<<.........>>>......<<<<.........>>>>.>>>>>>.... .(..(((....((........))....((((.......))))......(((((.......))))))))...).... 70S ribosome with EF-Tu-tRNA and P-site tRNA in chloramphenicol-treated Mycoplasma pneumoniae cells; tRNA-Phe 7phb 6 76 4.9 RF00005 URS000054164D_272634 36171285 0030533 0006412 272634 ggucuuguagcucagucgguagagcaacggucugaagaaccgugugucggcaguucgauucugcccgagaccacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))).... 70S ribosome with A- and P-site tRNAs in chloramphenicol-treated Mycoplasma pneumoniae cells; tRNA-Phe 7phb 7 76 4.9 RF00005 URS000054164D_272634 36171285 0030533 0006412 272634 ggucuuguagcucagucgguagagcaacggucugaagaaccgugugucggcaguucgauucugcccgagaccacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))).... 70S ribosome with A- and P-site tRNAs in chloramphenicol-treated Mycoplasma pneumoniae cells; tRNA-Phe 7phc 6 76 9.9 RF00005 URS000054164D_272634 36171285 0030533 0006412 272634 ggucuuguagcucagucgguagagcaacggucugaagaaccgugugucggcaguucgauucugcccgagaccacca ...<<<<..<<<<........>>>>..<<<<.......>>>>......<<<<<.......>>>>>>>>>....... ....(.(..((((........))))..((((.......))))......(((((.......)))))).)........ 70S ribosome with A*- and P/E-site tRNAs in chloramphenicol-treated Mycoplasma pneumoniae cells; tRNA-Phe 7phc 8 76 9.9 RF00005 URS000054164D_272634 36171285 0030533 0006412 272634 ggucuuguagcucagucgguagagcaacggucugaagaaccgugugucggcaguucgauucugcccgagaccacca ...<<<<..<<<<........>>>>..<<<<.......>>>>......<<<<<.......>>>>>>>>>....... ....(.(..((((........))))..((((.......))))......(((((.......)))))).)........ 70S ribosome with A*- and P/E-site tRNAs in chloramphenicol-treated Mycoplasma pneumoniae cells; tRNA-Phe 7pi8 7 76 8.9 RF00005 URS000054164D_272634 36171285 0030533 0006412 272634 ggucuuguagcucagucgguagagcaacggucugaagaaccgugugucggcaguucgauucugcccgagaccacca <<<<<<<..<<<<........>>>>..<<<<.......>>>>......<<<<<.......>>>>>>>>>>>>.... .((((.(..((.(........).))..((((.......))))......(((((.......)))))).))))..... 70S ribosome with P-site tRNA in spectinomycin-treated Mycoplasma pneumoniae cells; tRNA-Phe 7pi9 6 76 6.3 RF00005 URS000054164D_272634 36171285 0030533 0006412 272634 ggucuuguagcucagucgguagagcaacggucugaagaaccgugugucggcaguucgauucugcccgagaccacca <<<<<<...<<<<........>>>>..<<<<.......>>>>......<<<<<.......>>>>>.>>>>>>.... (((((.(..((((........))))..((((.......))))......(((((.......)))))).))))).... 70S ribosome with EF-Tu-tRNA and P-site tRNA in spectinomycin-treated Mycoplasma pneumoniae cells; tRNA-Phe 7pi9 7 76 6.3 RF00005 URS000054164D_272634 36171285 0030533 0006412 272634 ggucuuguagcucagucgguagagcaacggucugaagaaccgugugucggcaguucgauucugcccgagaccacca <<<<<<...<<<<........>>>>..<<<<.......>>>>......<<<<<.......>>>>>.>>>>>>.... (((((.(..((((........))))..((((.......))))......(((((.......)))))).))))).... 70S ribosome with EF-Tu-tRNA and P-site tRNA in spectinomycin-treated Mycoplasma pneumoniae cells; tRNA-Phe 7pia 7 76 13.6 RF00005 URS000054164D_272634 36171285 0030533 0006412 272634 ggucuuguagcucagucgguagagcaacggucugaagaaccgugugucggcaguucgauucugcccgagaccacca <<<<<....<<<<........>>>>..<<<<.......>>>>......<<<<<.......>>>>>..>>>>>.... ((((..(..((.(........).))..((((.......))))......(((((.......))))))..)))).... 70S ribosome with A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells; tRNA-Phe 7pia 8 76 13.6 RF00005 URS000054164D_272634 36171285 0030533 0006412 272634 ggucuuguagcucagucgguagagcaacggucugaagaaccgugugucggcaguucgauucugcccgagaccacca <<<<<....<<<<........>>>>..<<<<.......>>>>......<<<<<.......>>>>>..>>>>>.... ((((..(..((.(........).))..((((.......))))......(((((.......))))))..)))).... 70S ribosome with A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells; tRNA-Phe 7pib 7 76 4.7 RF00005 URS000054164D_272634 36171285 0030533 0006412 272634 ggucuuguagcucagucgguagagcaacggucugaagaaccgugugucggcaguucgauucugcccgagaccacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((.(..((.(........).)).(((((.......))))).....(((((.......)))))).))))).... 70S ribosome with EF-G, A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells; tRNA-Phe 7pib 8 76 4.7 RF00005 URS000054164D_272634 36171285 0030533 0006412 272634 ggucuuguagcucagucgguagagcaacggucugaagaaccgugugucggcaguucgauucugcccgagaccacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((.(..((.(........).)).(((((.......))))).....(((((.......)))))).))))).... 70S ribosome with EF-G, A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells; tRNA-Phe 7pic 8 76 9.1 RF00005 URS000054164D_272634 36171285 0030533 0006412 272634 ggucuuguagcucagucgguagagcaacggucugaagaaccgugugucggcaguucgauucugcccgagaccacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((.(..(((..........)))..((((.......))))......(((...........)))).))))).... 70S ribosome with P/E-site tRNA in spectinomycin-treated Mycoplasma pneumoniae cells; tRNA-Phe 7pio 7 76 9.5 RF00005 URS000054164D_272634 36171285 0030533 0006412 272634 ggucuuguagcucagucgguagagcaacggucugaagaaccgugugucggcaguucgauucugcccgagaccacca <<<<<<...<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>.>>>>>>.... (((.(((..((((........))))..((((.......))))......(((((.......)))))))).))).... 70S ribosome with P-site tRNA in pseudouridimycin-treated Mycoplasma pneumoniae cells; tRNA-Phe 7pip 6 76 9.3 RF00005 URS000054164D_272634 36171285 0030533 0006412 272634 ggucuuguagcucagucgguagagcaacggucugaagaaccgugugucggcaguucgauucugcccgagaccacca <<<<<<<..<<<<........>>>><<<<<.........>>>>.>...<<<<<.......>>>>>>>>>>>>.... (((((((..((((........))))..(((.........)))......(((((.......)))))))))))).... 70S ribosome with EF-Tu-tRNA and P-site tRNA in pseudouridimycin-treated Mycoplasma pneumoniae cells; tRNA-Phe 7pip 7 76 9.3 RF00005 URS000054164D_272634 36171285 0030533 0006412 272634 ggucuuguagcucagucgguagagcaacggucugaagaaccgugugucggcaguucgauucugcccgagaccacca <<<<<<<..<<<<........>>>><<<<<.........>>>>.>...<<<<<.......>>>>>>>>>>>>.... (((((((..((((........))))..(((.........)))......(((((.......)))))))))))).... 70S ribosome with EF-Tu-tRNA and P-site tRNA in pseudouridimycin-treated Mycoplasma pneumoniae cells; tRNA-Phe 7piq 6 76 9.7 RF00005 URS000054164D_272634 36171285 0030533 0006412 272634 ggucuuguagcucagucgguagagcaacggucugaagaaccgugugucggcaguucgauucugcccgagaccacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (.((..(..((((........))))..((((.......))))......(((((.......))))))..)).).... 70S ribosome with A- and P-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells; tRNA-Phe 7piq 7 76 9.7 RF00005 URS000054164D_272634 36171285 0030533 0006412 272634 ggucuuguagcucagucgguagagcaacggucugaagaaccgugugucggcaguucgauucugcccgagaccacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (.((..(..((((........))))..((((.......))))......(((((.......))))))..)).).... 70S ribosome with A- and P-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells; tRNA-Phe 7pir 6 76 12.1 RF00005 URS000054164D_272634 36171285 0030533 0006412 272634 ggucuuguagcucagucgguagagcaacggucugaagaaccgugugucggcaguucgauucugcccgagaccacca <<<..<<..<<<<........>>>>..<<<<.......>>>>......<<<<<.......>>>>>>>..>>>.... ..(...(..((((........))))...(((.......))).......(((((.......))))))...)...... 70S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells; tRNA-Phe 7pir 8 76 12.1 RF00005 URS000054164D_272634 36171285 0030533 0006412 272634 ggucuuguagcucagucgguagagcaacggucugaagaaccgugugucggcaguucgauucugcccgagaccacca <<<..<<..<<<<........>>>>..<<<<.......>>>>......<<<<<.......>>>>>>>..>>>.... ..(...(..((((........))))...(((.......))).......(((((.......))))))...)...... 70S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells; tRNA-Phe 7pis 6 76 15.0 RF00005 URS000054164D_272634 36171285 0030533 0006412 272634 ggucuuguagcucagucgguagagcaacggucugaagaaccgugugucggcaguucgauucugcccgagaccacca <<<<<<...<<<<........>>>>..<<<<......>.>>>......<<<<<.......>>>>>.>>>>>>.... ((.(..(..((((.....[..))))...((.........)).......(((((..]....))))))..).)).... 70S ribosome with EF-G, A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells; tRNA-Phe 7pis 8 76 15.0 RF00005 URS000054164D_272634 36171285 0030533 0006412 272634 ggucuuguagcucagucgguagagcaacggucugaagaaccgugugucggcaguucgauucugcccgagaccacca <<<<<<...<<<<........>>>>..<<<<......>.>>>......<<<<<.......>>>>>.>>>>>>.... ((.(..(..((((.....[..))))...((.........)).......(((((..]....))))))..).)).... 70S ribosome with EF-G, A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells; tRNA-Phe 7pit 7 76 5.7 RF00005 URS000054164D_272634 36171285 0030533 0006412 272634 ggucuuguagcucagucgguagagcaacggucugaagaaccgugugucggcaguucgauucugcccgagaccacca <<<<<<...<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>.>>>>>>.... (((((((..((.(........).))..((((.......))))......(((((.......)))))))))))).... 70S ribosome with EF-G, A/P- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells; tRNA-Phe 7pit 8 76 5.7 RF00005 URS000054164D_272634 36171285 0030533 0006412 272634 ggucuuguagcucagucgguagagcaacggucugaagaaccgugugucggcaguucgauucugcccgagaccacca <<<<<<...<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>.>>>>>>.... (((((((..((.(........).))..((((.......))))......(((((.......)))))))))))).... 70S ribosome with EF-G, A/P- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells; tRNA-Phe 7pjs v 77 2.35 RF00005 URS00001BBAFC_562 0030533 0006412 562 cgcggggnggagcagccuggnagcucgucgggcucauaacccgaagaucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Structure of the 70S ribosome with tRNAs in the classical pre-translocation state and apramycin (C); P-site tRNA(fMet) 7pjs w 76 2.35 RF00005 URS00021ED99D_562 0030533 0006412 562 gcccgganagcucagucgguagagcaggggauugaanauccccgunuccucggnucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).((((.........)))).....(((((..]....)))))))))))).... Structure of the 70S ribosome with tRNAs in the classical pre-translocation state and apramycin (C); P-site fMet-Phe-tRNA(Phe) 7pjt v 77 6.0 RF00005 URS00001BBAFC_562 34635670 0030533 0006412 562 cgcggggnggagcagccuggnagcucgucgggcucauaacccgaagaucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Structure of the 70S ribosome with tRNAs in hybrid state 1 (H1); P-site tRNA(fMet) 7pjt w 76 6.0 RF00005 URS00021ED99D_562 34635670 0030533 0006412 562 gcccgganagcucagucgguagagcaggggauugaanauccccgunuccucggnucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).((((.........)))).....(((((..]....)))))))))))).... Structure of the 70S ribosome with tRNAs in hybrid state 1 (H1); P-site fMet-Phe-tRNA(Phe) 7pju v 77 9.5 RF00005 URS00001BBAFC_83333 34635670 0030533 0006412 83333 cgcggggnggagcagccuggnagcucgucgggcucauaacccgaagaucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Structure of the 70S ribosome with tRNAs in hybrid state 2 (H2); P-site tRNA(fMet) 7pju w 76 9.5 RF00005 URS00021ED99D_83333 34635670 0030533 0006412 83333 gcccgganagcucagucgguagagcaggggauugaanauccccgunuccucggnucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).((((.........)))).....(((((..]....)))))))))))).... Structure of the 70S ribosome with tRNAs in hybrid state 2 (H2); P-site fMet-Phe-tRNA(Phe) 7pjv v 77 3.1 RF00005 URS00001BBAFC_83333 34635670 0030533 0006412 83333 cgcggggnggagcagccuggnagcucgucgggcucauaacccgaagaucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Structure of the 70S-EF-G-GDP-Pi ribosome complex with tRNAs in hybrid state 1 (H1-EF-G-GDP-Pi); P-site tRNA(fMet) 7pjv w 76 3.1 RF00005 URS00021ED99D_83333 34635670 0030533 0006412 83333 gcccgganagcucagucgguagagcaggggauugaanauccccgunuccucggnucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).((((.........)))).....(((((..]....)))))))))))).... Structure of the 70S-EF-G-GDP-Pi ribosome complex with tRNAs in hybrid state 1 (H1-EF-G-GDP-Pi); P-site fMet-Phe-tRNA(Phe) 7pjw v 77 4.0 RF00005 URS00001BBAFC_562 34635670 0030533 0006412 562 cgcggggnggagcagccuggnagcucgucgggcucauaacccgaagaucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Structure of the 70S-EF-G-GDP-Pi ribosome complex with tRNAs in hybrid state 2 (H2-EF-G-GDP-Pi); P-site tRNA(fMet) 7pjw w 76 4.0 RF00005 URS00021ED99D_562 34635670 0030533 0006412 562 gcccgganagcucagucgguagagcaggggauugaanauccccgunuccucggnucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).((((.........)))).....(((((..]....)))))))))))).... Structure of the 70S-EF-G-GDP-Pi ribosome complex with tRNAs in hybrid state 2 (H2-EF-G-GDP-Pi); P-site fMet-Phe-tRNA(Phe) 7pjx v 77 6.5 RF00005 URS00001BBAFC_562 34635670 0030533 0006412 562 cgcggggnggagcagccuggnagcucgucgggcucauaacccgaagaucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Structure of the 70S-EF-G-GDP ribosome complex with tRNAs in hybrid state 1 (H1-EF-G-GDP); P-site tRNA(fMet) 7pjx w 76 6.5 RF00005 URS00021ED99D_562 34635670 0030533 0006412 562 gcccgganagcucagucgguagagcaggggauugaanauccccgunuccucggnucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).((((.........)))).....(((((..]....)))))))))))).... Structure of the 70S-EF-G-GDP ribosome complex with tRNAs in hybrid state 1 (H1-EF-G-GDP); P-site fMet-Phe-tRNA(Phe) 7pjy v 77 3.1 RF00005 URS00001BBAFC_83333 34635670 0030533 0006412 83333 cgcggggnggagcagccuggnagcucgucgggcucauaacccgaagaucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Structure of the 70S-EF-G-GDP ribosome complex with tRNAs in chimeric state 1 (CHI1-EF-G-GDP); P-site tRNA(fMet) 7pjy w 76 3.1 RF00005 URS00021ED99D_83333 34635670 0030533 0006412 83333 gcccgganagcucagucgguagagcaggggauugaanauccccgunuccucggnucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>><<<<<<<.....>>>>>>.>...<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).((((.........)))).....(((((..]....)))))))))))).... Structure of the 70S-EF-G-GDP ribosome complex with tRNAs in chimeric state 1 (CHI1-EF-G-GDP); P-site fMet-Phe-tRNA(Phe) 7pjz v 77 6.0 RF00005 URS00001BBAFC_562 34635670 0030533 0006412 562 cgcggggnggagcagccuggnagcucgucgggcucauaacccgaagaucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>......<<<<.......>>>>.>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Structure of the 70S-EF-G-GDP ribosome complex with tRNAs in chimeric state 2 (CHI2-EF-G-GDP); P-site tRNA(fMet) 7pjz w 76 6.0 RF00005 URS00021ED99D_562 34635670 0030533 0006412 562 gcccgganagcucagucgguagagcaggggauugaanauccccgunuccucggnucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).((((.........)))).....((((...].....))))))))))).... Structure of the 70S-EF-G-GDP ribosome complex with tRNAs in chimeric state 2 (CHI2-EF-G-GDP); P-site fMet-Phe-tRNA(Phe) 7pks P 17 3.6 RF00250 URS00023119AD_11676 34762484 0035195 0016442 11676 uaacuagggaacccacu ................. ................. Structural basis of Integrator-mediated transcription regulation; TAR RNA 7pwg w 14 2.75 RF00005 URS00023358BC_184922 35100413 0030533 0006412 184922 agcggccgccacca .<<<..>>>..... .(((())))..... Cryo-EM structure of large subunit of Giardia lamblia ribosome at 2.7 A resolution; E-site tRNA 7pzy 10 16 2.32 RF00005 URS0002335908_237561 35613268 0030533 0006412 237561 ggcagcucugcuacca <<<<<..>>>>>.... .(((....)))..... Structure of the vacant Candida albicans 80S ribosome; Mixture of endogenous E-tRNAs 7q0p 10 14 2.77 RF00005 URS0000D22C51_237561 35613268 0030533 0006412 237561 ggcagcugcuacca <<<<..>>>>.... .(((..)))..... Structure of the Candida albicans 80S ribosome in complex with anisomycin; Mixture of endogenous E-tRNA 7q0r 10 14 2.67 RF00005 URS0000D22C51_237561 35613268 0030533 0006412 237561 ggcagcugcuacca <<<<..>>>>.... .(((..)))..... Structure of the Candida albicans 80S ribosome in complex with blasticidin s; Mixture of the endogenous E-tRNA 7q3l 2 41 2.21 RF00004 URS00003EE995_9606 34822310 0045131 0000348 0005686 9606 gaucaaguguaguaucuguucuaucaguuuaauaucugaua <<.<<.<<<...>>>.>>.>>.<<<<<........>>>>>. ((.((.((.....)).)).)).(((((........))))). Human 17S U2 snRNP 5' domain; U2 snRNA 7q4k D2 76 3.0 RF00005 URS000261775C_562 37393329 0030533 0006412 562 ggcuacgnagcucagnnngnnagagcacaucacunaunaugaugggncacaggnucgaaucccgucguagccacca <<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>....<<.<<.......>>.>>>>>>>>>.... (((((((..((((.........)))).((((.........))))....((.((.......)).))))))))).... Erythromycin-stalled Escherichia coli 70S ribosome with streptococcal MsrDL nascent chain; Met-tRNA (P site) 7q4k D3 75 3.0 RF00005 URS00005AA258_562 37393329 0030533 0006412 562 gcccgganagcucagncggnagagcaggggauugaaaauccccgugccuuggnucgauuccgaguccgggcacca <<<<<<...<<<<........>>>>.<<<<<<.....>>>>>>....<<<<<.......>>>>>.>>>>>>.... (((((....((((........)))).((((.........))))....((.((.......)).))..))))).... Erythromycin-stalled Escherichia coli 70S ribosome with streptococcal MsrDL nascent chain; Phe-tRNA (E site) 7q4o 2 35 2.1 RF00004 URS00003EE995_9606 34822310 0045131 0000348 0005686 9606 aaguguaguaunuguucunaucaguuuaauaunug .....................<<<........>>> .....................(((........))) Substrate-bound A-like U2 snRNP; U2 snRNA 7q4p 2 45 2.15 RF00004 URS00003EE995_9606 34822310 0045131 0000348 0005686 9606 ucnnccgcuaanauuaguaunuguucunaucaguuuaauaunuga ..<<<.<<<<....>>>>....>>>....<<<<........>>>> ....(..((......)).....)......((((........)))) U2 snRNP after ATP-dependent remodelling; U2 snRNA 7qg8 A 73 3.97 RF00005 URS00023358F7_83333 35264790 0030533 0006412 83333 gcgcggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgcgca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>. (((((((..((((.....[..)))).(((((.......))))).....(((((..]....)))))))))))). Structure of the collided E. coli disome - VemP-stalled 70S ribosome; A-site tRNA 7qg8 M 75 3.97 RF00005 URS00004FF598_83333 35264790 0030533 0006412 83333 ugggguaucgccaagcgguaaggcaccggauucugauuccggcauuccgagguucgaauccucguaccccagcca <<<<<<<..<<<.........>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..(((.....[...))).(((((.......))))).....(((((..]....)))))))))))).... Structure of the collided E. coli disome - VemP-stalled 70S ribosome; P-site tRNA 7qgg u 76 2.86 RF00005 URS0000EEAD11_10116 36038000 0030533 0006412 10116 gcccggauagcucagucgguagagcaggggauuccguauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... .(.((((..((.(........).))..((((.......))))......((.((.......)).)))))).)..... Neuronal RNA granules are ribosome complexes stalled at the pre-translocation state; RNA (76-MER) 7qgg v 76 2.86 RF00005 URS0000EEAD31_10116 36038000 0030533 0006412 10116 ugcccgguagccccgaagguagagcaggggauuccgaauccccguguccuugguucgauuccgaguccgggcacca .<<<.....<<............>>.<<<<<<.....>>>>>>......<<<<.......>>.>>...>>.>.... ..((.....((.(........).)).(((((.......))))).......(((.(..)..)).)....))...... Neuronal RNA granules are ribosome complexes stalled at the pre-translocation state; RNA (76-MER) 7qgh M 75 4.48 RF00005 URS00004FF598_83333 35264790 0030533 0006412 83333 ugggguaucgccaagcgguaaggcaccggauucugauuccggcauuccgagguucgaauccucguaccccagcca <<<<<<<..<<<.........>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..(((.....[...))).(((((.......))))).....(((((..]....)))))))))))).... Structure of the E. coli disome - collided 70S ribosome; P-site tRNA 7qgh u 73 4.48 RF00005 URS00023358F7_83333 35264790 0030533 0006412 83333 gcgcggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgcgca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>. (((((((..((((.....[..)))).(((((.......))))).....(((((..]....)))))))))))). Structure of the E. coli disome - collided 70S ribosome; A-site tRNA 7qgn A 73 3.37 RF00005 URS00023358F7_562 35264790 0030533 0006412 562 gcgcggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgcgca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>. (((((((..((((.....[..)))).(((((.......))))).....(((((..]....)))))))))))). Structure of the SmrB-bound E. coli disome - stalled 70S ribosome; A-site tRNA 7qgn M 75 3.37 RF00005 URS00004FF598_562 35264790 0030533 0006412 562 ugggguaucgccaagcgguaaggcaccggauucugauuccggcauuccgagguucgaauccucguaccccagcca <<<<<<<..<<<.........>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..(((.....[...))).(((((.......))))).....(((((..]....)))))))))))).... Structure of the SmrB-bound E. coli disome - stalled 70S ribosome; P-site tRNA 7qgr M 75 5.7 RF00005 URS00004FF598_562 35264790 0030533 0006412 562 ugggguaucgccaagcgguaaggcaccggauucugauuccggcauuccgagguucgaauccucguaccccagcca <<<<<<<..<<<.........>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..(((.....[...))).(((((.......))))).....(((((..]....)))))))))))).... Structure of the SmrB-bound E. coli disome - collided 70S ribosome; P-site tRNA 7qgr u 73 5.7 RF00005 URS00023358F7_562 35264790 0030533 0006412 562 gcgcggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgcgca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>. (((((((..((((.....[..)))).(((((.......))))).....(((((..]....)))))))))))). Structure of the SmrB-bound E. coli disome - collided 70S ribosome; A-site tRNA 7qgu z 77 4.75 RF00005 URS00002C7A07_1423 35264790 0030533 0006412 1423 gguccgguaguucaguugguuagaaugccugccugucacgcaggaggucgcggguucgagucccguccggaccgcca <<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))).... Structure of the B. subtilis disome - stalled 70S ribosome; P-site tRNA 7qh4 y 77 5.45 RF00005 URS00002C7A07_1423 35264790 0030533 0006412 1423 gguccgguaguucaguugguuagaaugccugccugucacgcaggaggucgcggguucgagucccguccggaccgcca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ..(((((..((((.........)))).(((((.......))))).....(((((.......))))))))))...... Structure of the B. subtilis disome - collided 70S ribosome; tRNA 7qh4 1 77 5.45 RF00005 URS00002C7A07_1423 35264790 0030533 0006412 1423 gguccgguaguucaguugguuagaaugccugccugucacgcaggaggucgcggguucgagucccguccggaccgcca <<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))).... Structure of the B. subtilis disome - collided 70S ribosome; tRNA 7qi4 Ax 70 2.21 RF00005 URS000268144D_9606 38769321,38769321,37503168 0030533 0006412 9606 uagggaauaguuuaaaaaacaucugacucauauucagaagauggagguucaauuccuccuucccuaacca <<<<<<<..<<<<...>>>>.<<<<<.......>>>>>....<<<<<.......>>>>>>>>>>>>.... (((((((..((((...)))).(((((.......)))))....(((((.......)))))))))))).... Human mitochondrial ribosome at 2.2 A resolution (bound to partly built tRNAs and mRNA); P/P-tRNA 7qi5 Ax 70 2.63 RF00005 URS000268144D_9606 38769321,38769321,37503168 0030533 0006412 9606 uagggaauaguuuaaaaaacaucugacucauauucagaagauggagguucaauuccuccuucccuaacca <<<<<<<..<<<<...>>>>.<<<<<.......>>>>>....<<<<<.......>>>>>>>>>>>>.... (((((((..((.(...).)).(((((.......)))))....(((((.......)))))))))))).... Human mitochondrial ribosome in complex with mRNA, A/A-, P/P- and E/E-tRNAs at 2.63 A resolution; P/P-tRNA 7qi5 Ay 70 2.63 RF00005 URS00021ED990_9606 38769321,38769321,37503168 0030533 0006412 9606 uagggaauaguuuaaaaaacagcugacuuucaaucagcagauggagguucaauuccuccuucccuaacca <<<<<<<..<<<<...>>>>.<<<<<.......>>>>>....<<<<<.......>>>>>>>>>>>>.... (((((((..((((...)))).(.(((.......))).)....(((((.......)))))))))))).... Human mitochondrial ribosome in complex with mRNA, A/A-, P/P- and E/E-tRNAs at 2.63 A resolution; E/E-tRNA 7qi6 Ax 71 2.98 RF00005 URS0002681406_9606 38769321,38769321,37503168 0030533 0006412 9606 uagggaauaguuuaacaaaacuccugacucauccucaggagauggagguucaauuccuccuucccuaacca <<<<<<<...<<<....>>><<<<<<<.......>>>>>>>..<<<<<.......>>>>>>>>>>>>.... (((((((...(((....)))..(((((.......)))))....(((((.......)))))))))))).... Human mitochondrial ribosome in complex with mRNA, A/P- and P/E-tRNAs at 2.98 A resolution; P/E-tRNA 7qp6 w 75 4.7 RF00005 URS0000326EAC_9606 35489072 0030533 0006412 9606 agcagaguggcgcagcggaagcgugcugggcccauaacccagaggucgauggaucgaaaccauccucugcuacca .<<<<<...<<<<.......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>.>>>>>..... .((((((...(((.......)))..(((((.......))))).....(((((.......)))))))))))..... Structure of the human 48S initiation complex in open state (h48S AUG open); Initiator Met-tRNA-i 7qp7 w 75 3.7 RF00005 URS0000326EAC_9606 35489072 0030533 0006412 9606 agcagaguggcgcagcggaagcgugcugggcccauaacccagaggucgauggaucgaaaccauccucugcuacca .<<<<<....<<<.......>>>..<<<<<.......>>>>>.....<<<<<.......>>>>>.>>>>>..... .((((((....((.......))...(((((.......))))).....((.((.......)).))))))))..... Structure of the human 48S initiation complex in closed state (h48S AUG closed); Initiator Met-tRNA-i 7qtt d 93 3.1 RF00026 URS000035C796_9606 37165190 0030621 0000244,0000353 0005688,0046540 9606 gugcucgcuucggcagcacauauacuaaaauuggaacgauacagagaagauuagcauggccccugcgcaaggaugacacgcucgugaagcguu <<<<<.<<<..>>>>>>>>.....................................<<...<<<.....>>>....>>............... (((((.((....))))))).....................................((..((((.....)))..).))............... Structural organization of a late activated human spliceosome (Baqr, core region); U6snRNA 7qtt e 98 3.1 RF00020 URS000075BAAE_9606 37165190 0000244,0000353 0005682,0046540 9606 gguuucucuucagaucgcauaaaucuuucgccuuuuacuaaagauuuccguggagaggaacaaucugagauuuuuugaggccuugcuuuggcaaggcu .<<<<<<<<<<<........<<<<<<<<...........>>>>>>>>...>>>>>>>>>>>.................<<<<<<<<....>>>>>>>> .((((((((((....((...((((((((.(.......).)))))))).)).)))))))))).................((.(((((....)))).))) Structural organization of a late activated human spliceosome (Baqr, core region); U5 snRNA 7qtt f 76 3.1 RF00004 URS00003EE995_9606 37165190 0045131 0000348 0005686 9606 aucgcuucucggccuggcuaagaucaaguguaguaucuguucuuaucaguuuaauaucugauguccucucgaggac .............................................<<<<........>>>>...<<<<..>>>>.. .............................................(((..........)))...((((..)))).. Structural organization of a late activated human spliceosome (Baqr, core region); U2snRNA 7qv1 H 77 3.5 RF00005 URS00002C7A07_224308 35264791 0030533 0006412 224308 gguccgguaguucaguugguuagaaugccugccugucacgcaggaggucgcggguucgagucccguccggaccgcca <<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))).... Bacillus subtilis collided disome (Leading 70S); P-site tRNA 7qv2 H 77 3.5 RF00005 URS00002C7A07_224308 35264791 0030533 0006412 224308 gguccgguaguucaguugguuagaaugccugccugucacgcaggaggucgcggguucgagucccguccggaccgcca <<<<<<<..<<<<.........>>>>..<<<<.......>>>.>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.........)))).(..(.........)..).....(((((.......)))))))))))).... Bacillus subtilis collided disome (Collided 70S); A/P-site tRNA 7qv2 x 76 3.5 RF00005 URS00005477C0_224308 35264791 0030533 0006412 224308 gguccgguaguucaguugguuagaaugccugccugucacgcaggaggucgcggguucgagucccguccggaccgcc ..<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>..... ..((((...((((.........)))).(((...........))).....(((((.......))))).))))..... Bacillus subtilis collided disome (Collided 70S); P/E-site tRNA 7qv3 H 77 5.14 RF00005 URS00002C7A07_224308 35264791 0030533 0006412 224308 gguccgguaguucaguugguuagaaugccugccugucacgcaggaggucgcggguucgagucccguccggaccgcca <<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))).... Bacillus subtilis MutS2-collided disome complex (MutS2 conf.2; Leading 70S); P-site tRNA 7qvp B4 76 3.0 RF00005 URS00005AA258_9606 36302773 0030533 0006412 9606 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>><<<<<<<.....>>>>>>.>...<<<<<.......>>>>>>>>>>>>.... .((((((..((((.....[..)))).(((((.......))))).....((.((..]....)).))))))))..... Human collided disome (di-ribosome) stalled on XBP1 mRNA; tRNA P/P 7qvp B5 75 3.0 RF00005 URS0000326EAC_9606 36302773 0030533 0006412 9606 agcagaguggcgcagcggaagcgugcugggcccauaacccagaggucgauggaucgaaaccauccucugcuacca <<<<<<<..<<<<.......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... ((((.((..((((.......)))).(((((.......))))).....(((((.......))))))).)))).... Human collided disome (di-ribosome) stalled on XBP1 mRNA; tRNA P/E 7qvp CC 75 3.0 RF00005 URS0000E60BA3_9606 36302773 0030533 0006412 9606 uccgauauagcguaacggcuaucacaucacgcuuucaccguggagaccgggguucgacuccccguaucggagcca <<<<<<<....<..........>...<<<<<.......>>>>>....<<<<<.......>>>>>>>>>>>>.... (((((((..(.(.....[....).).(((((.......)))).)...(((((..]....)))))))))))).... Human collided disome (di-ribosome) stalled on XBP1 mRNA; tNRA E/E 7qvp D5 73 3.0 RF00005 URS00005AA258_9606 36302773 0030533 0006412 9606 gcccggauagcucagggagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca .<<<<....<<<.......>>>.<<<<.<....>..>>>>.....<<<...........>>>.>.>>>..... .(.(.(...((.....[...))..(((.........)).).....((.....].......))..)))...... Human collided disome (di-ribosome) stalled on XBP1 mRNA; tRNA P/P 7qwq 1 167 2.83 RF00017,RF01856 URS00023358EA_9606 35201867 0006617 0005786 9606 cgcuaugccgaucggguguccgcacuaaguucggcaucaauauggugaccucccgggagcgggggaccaccagguugccuaaggaggggugaaccggcccaggucggaaacggagcaggucaaaacucccgugcugaucaguagugggaucgcgccugugaauagcc .<<<<.........<..<<<<.<<<<<.<.<<<<<<<<<<<..<<<<..<<<<<<....>>>>>>..>>>>..>>>>........<<<<<......<..<.<.<<<....>>>..>.>.>....>>>>>.>>>>>>>.>..>>>>>>>...>>...>.....>>>>. .((.(.........((.(.((.((((..(..((((.(((.(..((((..((((((....))))))..))))..).))......(.(((((......(.(....(((....))).....).)...))))))).))))..)...))))))....)..)).....).).) Ternary complex of ribosome nascent chain with SRP and NAC; SRP RNA 7SL 7qxa B 253 3.2 RF00024 URS00004A7003_9606 35201900 2.7.7.49 0003720,0003964,0000332,0005515,0044877,0070182,0071987 0007004,0071456,2000773 0000333,0000781,0005737,0015030,0005697,0090661 9606 gggugguggccauuuuuugucuaacccuaacugagaagggcguaggcgccgugcuuuugcuccccgcgcgcuguuuuucucgcugacuuucagcgggcggaaaagccucggccugccgccugagcaaacaaaaaaugucagcugcuggcccguucgccccgaaccccgccgaggccgcggucggcccggggcuucuccggaggcacccacugccaccgcgaagaguugggcucugucagccgcgggucucucg ...<.<.<<<<..........................[[[[.[[[[.......(((((.....[[[[.(((((.......<<<<<<<<<<))))).]]]])))))......]]]]..]]]]...........>>>.>>>>>>.>..>>>>>....>...<<<..<<<<<...<<.<<<<<<.<<<..<<<<<<<......>>>>.>>>...>>>>>>>>>.<<<<.....>>>>.....>>>>>>>....>>> .......(((((..........................((((((((......((((.(.....((((.(((((.......[[[[[[[[[[))))).)))).))))).....))))).)))............]]].]]]]]].].))))).........((((.(((((.......(((((.(((..((((((........))).)))...))))))))..((((.....)))).......)))))..).))) Cryo-EM map of human telomerase-DNA-TPP1 complex (sharpened); human telomerase RNA 7qxb B 256 3.9 RF00024 URS00004A7003_9606 35201900 2.7.7.49 0003720,0003964,0000332,0005515,0044877,0070182,0071987 0007004,0071456,2000773 0000333,0000781,0005737,0015030,0005697,0090661 9606 gggugguggccauuuuuugucuaacccuaacugagaagggcguaggcgccgugcuuuugcuccccgcgcgcuguuuuucucgcugacuuucagcgggcggaaaagccucggccugccgccuuccgagcaaacaaaaaaugucagcugcuggcccguucgccccgaaccccgccgaggccgcggucggcccggggcuucuccggaggcacccacugccaccgcgaagaguugggcucugucagccgcgggucucucg ...<.<.<<<<..........................<<<<<<<<<<.....<<<<<<.....<<<<.<<<<<.......[(((((((((>>>>>.>>>>>>>>>>....>>>>>>.>>>>..............))).)))))).]..>>>>>....>...<<<..<<<<<....<..<<<<<.<<<..<<<<<<........>>>.>>>...>>>>>>>>..<<<<.....>>>>.....>.>>>>>....>>> .......(((((..........................(((((((((.(....(((.(.....((((.(((((.......[[[[[[[[[[))))).)))).))))....))))))).)))...............]]].]]]]]].].))))).........((((.(((((....(..(((((.(((..((((((........))).)))...))))))))..((((.....)))).....).)))))..).))) Cryo-EM map of human telomerase-DNA-TPP1-POT1 complex (sharpened map); human telomerase RNA 7qxs B 256 3.9 RF00024 URS00004A7003_9606 35201900 2.7.7.49 0003720,0003964,0000332,0005515,0044877,0070182,0071987 0007004,0071456,2000773 0000333,0000781,0005737,0015030,0005697,0090661 9606 gggugguggccauuuuuugucuaacccuaacugagaagggcguaggcgccgugcuuuugcuccccgcgcgcuguuuuucucgcugacuuucagcgggcggaaaagccucggccugccgccuuccgagcaaacaaaaaaugucagcugcuggcccguucgccccgaaccccgccgaggccgcggucggcccggggcuucuccggaggcacccacugccaccgcgaagaguugggcucugucagccgcgggucucucg ...<.<.<<<<..........................<<<<<<<<<<.....<<<<<<.....<<<<.<<<<<.......[(((((((((>>>>>.>>>>>>>>>>....>>>>>>.>>>>..............))).)))))).]..>>>>>....>...<<<..<<<<<....<..<<<<<.<<<..<<<<<<........>>>.>>>...>>>>>>>>..<<<<.....>>>>.....>.>>>>>....>>> .......(((((..........................(((((((((.(....(((.(.....((((.(((((.......[[[[[[[[[[))))).)))).))))....))))))).)))...............]]].]]]]]].].))))).........((((.(((((....(..(((((.(((..((((((........))).)))...))))))))..((((.....)))).....).)))))..).))) Cryo-EM structure of human telomerase-DNA-TPP1-POT1 complex (with POT1 side chains); RNA (256-MER) 7r6l A 343 2.85 RF00028 URS00023358E6_5911 35501384 0000372 5911 cggguggagggaaaaguuaucaggcaugcaccugguagcuagucuuuaaaccaauagauugcaucgguuuaaaaggcaagaccgucaaauugcgggaaaggggucaacagccguucaguaccaagucucaggggaaacuuugagauggccuugcaaaggguaugguaauaagcugacggacaugguccuaaccacgcagccaaguccuaagucaagcuugauauggaugcaguucacagacuaaaugucggucggggaagaucuucucauaagauauagucggaccucuccuuaaugggagcuagcggaugaagugaugcaacacuggagccgcugggaacua ..............<<<<<<<<<<..(((.>>>>>>>>>>.<<<<<<<<<<<......<<<<<<.>>>>>.>>>>>>..<<<<<.<....<<<<<<...<<<<<<.....<<<.<<<<.<<...<<<<<<<<<....>>>>>>>>>..<<..)))..>>.....>>......>>>>>>>....>>>>>>..>>.>>>><<...<<<<...<<<<<..>>>>>..>>>>...>>.....(((((...>.>>>>>.<<<<<<..>>>>>>........)))))......<<<<<....>>>>><<<<<<<.(..<<<<>>>>>>>>>>...)>>>>>>>...... ..............((((((((((..{{{.)))))))))).(((((((((((....(.[[[[[[)))))).))))))..(((((.(....((((((...((((((.....(((.((((.(((..(((((((((....)))))))))..((..}}.}.))....)))......)))))))....))))))..)).))))((...((((..((((((()))))).)))))...))...[.[[[[[...).))))).((((((()))))))........]]]]]].....(((((....)))))(((((((....((((]]]]]]))))....)))))))...... 5 prime exon-free pre-2S intermediate of the Tetrahymena group I intron, symmetry-expanded monomer from a synthetic dimeric construct; Group I intron, 5 prime fragment 7r6m A 356 3.68 RF00028 URS00023358E9_5911 35501384 0000372 5911 uggagggaaaaguuaucaggcaugcaccugguagcuagucuuuaaaccaauagauugcaucgguuuaaaaggcaagaccgucaaauugcgggaaaggggucaacagccguucaguaccaagucucaggggaaacuuugagauggccuugcaaaggguaugguaauaagcugacggacaugguccuaaccacgcagccaaguccuaagucaagcuugauauggaugcaguucacagacuaaaugucggucggggaagaucuucucauaagauauagucggaccucuccuuaaugggagcuagcggaugaagugaugcaacacuggagccgcugggaacuauaguuuuggaguacucg ..........<<<<<<<<<<..(((.>>>>>>>>>>.<<<<<<.<<<<........<<<<.>>>>..>>>>>>..<<<<<.<....<<<<<<...<<<<<<.....<<<..<<..<<...<<<<<<<<<....>>>>>>>>>..<<..)))..>>.....>>.......>>.>>>....>>>>>>..>>.>>>><<...<<<<...<.<<<..>>>.>..>>>>...>>.....(((((...>.>>>>>.<<<<<<..>>>>>>........))))).((((.<<<<<....>>>>><<<<<<<.(..<<<.>>>>...>>>...)>>>>>>><<<<<<>>>>>>.)).....)). ..........((((((((((...{{.)))))))))).((((((...((....(....[[[)))....))))))..(((((.(....((((((...((((((.....(((.(..(.(((..((((((..(....)..))))))..((..}}...))....)))......)..))))....))))))..)).))))((...((((......((())).....))))...))...[.[[[[[...).))))).((((((()))))))........]]]]]]((((.(((((....)))))(.(((((.....((.]]]....)).....))))).)(((((()))))).)).....)). Post-2S intermediate of the Tetrahymena group I intron, symmetry-expanded monomer from a synthetic dimeric construct; Group I intron 7r6n A 354 4.1 RF00028 URS0002335905_5911 35501384 0000372 5911 ggaaaaguuaucaggcaugcaccugguagcuagucuuuaaaccaauagauugcaucgguuuaaaaggcaagaccgucaaauugcgggaaaggggucaacagccguucaguaccaagucucaggggaaacuuugagauggccuugcaaaggguaugguaauaagcugacggacaugguccuaaccacgcagccaaguccuaagucaacguugauauggaugcaguucacagacuaaaugucggucggggaagaucuucucauaagauauagucggaccucuccuuaaugggagcuagcggaugaagugaugcaacacuggagccgcugggaacuaauuuaguuuuggaguacucg .....<<<<<<<<<<..[((.>>>>>>>>>>.<<<<<<<<<<<......<<<<<<.>>>>>.>>>>>>..<<<<<.<....<<<<<<...<<<<<<.....<<<.<<<<.<<...<<<<<<<<<....>>>>>>>>>..<<..)).].>>.....>>......>>>>>>>....>>>>>>..>>.>>>><<...<<<<...<<<<<..>>>>>..>>>>...>>.....(((((...>.>>>>>.<<<<<<..>>>>>>........))))).((((.<<<<<....>>>>><<<<<<<....<<<<>>>>>>>>>>....>>>>>>><<<<<<<.>>>>>>>.)).....)). .....((((((((((..{{{.)))))))))).(((((((((((....(.[[[[[[)))))).))))))..(((((.(....((((((...((((((.....(((.((((.(((..(((((((.(....).)))))))..((..}}.}.))....)))......)))))))....))))))..)).))))((...((((....((((()))))...))))...))...[.[[[[[...).))))).((((((()))))))........]]]]]]((((.(((((....)))))(((((((....((((]]]]]]))))....))))))).((((((.))))))..)).....)). Exon-free state of the Tetrahymena group I intron, symmetry-expanded monomer from a synthetic trimeric construct; Group I intron 7r81 t1 76 2.7 RF00005 URS0000E60BDA_5141 34815343 0030533 0006412 5141 uuccucguggcccaauggucacggcgucuggcuacgaaccagaagauuccagguucaaguccuggcggggaagcca <<<<<<<..<<<..........>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... ((((.((..(((.....[....))).(((((.......))))).....(((((..]....))))))).)))).... Structure of the translating Neurospora crassa ribosome arrested by cycloheximide; tRNA 7r81 u1 76 2.7 RF00005 URS0000E60BDA_5141 34815343 0030533 0006412 5141 uuccucguggcccaauggucacggcgucuggcuacgaaccagaagauuccagguucaaguccuggcggggaagcca <<<<<<<..<<<..........>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... ((((.((..(((.....[....))).(((((.......))))).....(((((..]....))))))).)))).... Structure of the translating Neurospora crassa ribosome arrested by cycloheximide; tRNA 7rdx T 46 3.1 RF03125 URS00021ED933_32630 35260847 0039694 32630 augugauuuuaauagcuucuuaggagaaugacguagcaugcuacgc .............................................. .............................................. SARS-CoV-2 replication-transcription complex bound to nsp13 helicase - nsp13(2)-RTC - open class; Template RNA 7rex A 34 2.6 RF00522 URS00023119CB_2126436 0008616 2126436 ugugguucgcaaccaucccacauaaaaaaacuag <<<<<............>>>>>............ (((((............)))))............ PreQ1-1 (type-1) riboswitch in complex with tandem stacked metabolites; RNA (34-MER) 7rex B 33 2.6 RF00522 URS00023119CB_2126436 0008616 2126436 ugugguucgcaaccaucccacauaaaaaaacua <<<<<............>>>>>........... (((((............)))))........... PreQ1-1 (type-1) riboswitch in complex with tandem stacked metabolites; RNA (34-MER) 7rq8 1w 71 2.5 RF00005 URS00005AA258_562 34707295 0030533 0006412 562 gcccgganagcucaggguagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggca <<<<<<<..<<<<......>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>. (((((((..((((...[..)))).((((.........)))).....(((((..]....)))))))))))). Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAs, and aminoacylated P-site tRNA at 2.50A resolution; A-site tRNA 7rq8 1x 76 2.5 RF00005 URS000041AF00_562 34707295 0030533 0006412 562 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaaccn <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAs, and aminoacylated P-site tRNA at 2.50A resolution; P-site tRNA 7rq8 1y 74 2.5 RF00005 URS00005AA258_562 34707295 0030533 0006412 562 gcccgganagcucaggguagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<......>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((...[..)))).((((.........)))).....(((((..]....)))))))))))).... Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAs, and aminoacylated P-site tRNA at 2.50A resolution; E-site tRNA 7rq8 2w 69 2.5 RF00005 URS00005AA258_562 34707295 0030533 0006412 562 cccgganagcucagggagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggca <<<<<<..<<<<.....>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>.. ((((((..((((...[.)))).((((.........)))).....(((((..]....))))))))))).. Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAs, and aminoacylated P-site tRNA at 2.50A resolution; A-site tRNA 7rq8 2x 76 2.5 RF00005 URS000041AF00_562 34707295 0030533 0006412 562 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaaccn <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAs, and aminoacylated P-site tRNA at 2.50A resolution; P-site tRNA 7rq8 2y 73 2.5 RF00005 URS00005AA258_562 34707295 0030533 0006412 562 gcccgganagcucagggagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<.....>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((...[.)))).((((.........)))).....(((((..]....)))))))))))).... Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAs, and aminoacylated P-site tRNA at 2.50A resolution; E-site tRNA 7rq9 1w 72 2.6 RF00005 URS00005AA258_562 34707295 0030533 0006412 562 gcccgganagcucaggguagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcac <<<<<<<..<<<<......>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.. (((((((..((((...[..)))).((((.........)))).....(((((..]....)))))))))))).. Crystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAs, and aminoacylated P-site tRNA at 2.60A resolution; A-site tRNA 7rq9 1x 76 2.6 RF00005 URS000041AF00_562 34707295 0030533 0006412 562 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaaccn <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAs, and aminoacylated P-site tRNA at 2.60A resolution; P-site tRNA 7rq9 1y 74 2.6 RF00005 URS00005AA258_562 34707295 0030533 0006412 562 gcccgganagcucaggguagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<......>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((......)))).((((.........)))).....(((((.......)))))))))))).... Crystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAs, and aminoacylated P-site tRNA at 2.60A resolution; E-site tRNA 7rq9 2w 70 2.6 RF00005 URS00005AA258_562 34707295 0030533 0006412 562 cccgganagcucagggagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcac <<<<<<..<<<<.....>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>... ((((((..((((...[.)))).((((.........)))).....(((((..]....)))))))))))... Crystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAs, and aminoacylated P-site tRNA at 2.60A resolution; A-site tRNA 7rq9 2x 76 2.6 RF00005 URS000041AF00_562 34707295 0030533 0006412 562 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaaccn <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAs, and aminoacylated P-site tRNA at 2.60A resolution; P-site tRNA 7rq9 2y 73 2.6 RF00005 URS00005AA258_562 34707295 0030533 0006412 562 gcccgganagcucagggagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<.....>>>>.<<<<<<<...>>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((...[.)))).((((.........)))).....(((((..]....)))))))))))).... Crystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAs, and aminoacylated P-site tRNA at 2.60A resolution; E-site tRNA 7rr5 A 76 3.23 RF00005 URS0002311986_4932 34706231 0030533 0006412 4932 gggucguuagcucaguugguagagcaguugacuuuuuaucaauuggucgcagguucgaauccugcacgacccacca <<<<<<<..<<<<........>>>><<<<<<.......>>>>>>....<<<<<.......>>>>>>>>>>>>.... ((((((...((((........))))(.((((.......)))).).....((((.......))))..)))))).... Structure of ribosomal complex bound with Rbg1/Tma46; A-tRNA 7rr5 P 76 3.23 RF00005 URS00023119BF_4932 34706231 0030533 0006412 4932 uuccucguggcccaauggucacggcgucuggcuucgaaccagaagauuccagguucaaguccuggcggggaagcca <<<<<<<..<<<..........>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... ((((.((..(((.....[....))).(((((.......))))).....(((((..]....))))))).)))).... Structure of ribosomal complex bound with Rbg1/Tma46; P-tRNA 7ryf v 77 2.65 RF00005 URS00002D670D_480119 35100868 0030533 0006412 480119 ggcuaugnagcucaguuggnuagagcaccgcacucauaaugcgggggucacaagnucaagucucgucauagccacca <<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<.<<.......>>.>>>>>>>>>.... (((((((..((((.........)))).(((((.......))))).....((.((.......)).))))))))).... A. baumannii Ribosome-TP-6076 complex: P-site tRNA 70S; tRNA-met 7ryg v 77 2.38 RF00005 URS00002D670D_480119 35100868 0030533 0006412 480119 ggcuaugnagcucaguuggnuagagcaccgcacucauaaugcgggggucacaagnucaagucucgucauagccacca <<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<.<<.......>>.>>>>>>>>>.... (((((((..((((.........)))).(((((.......))))).....((.((.......)).))))))))).... A. baumannii Ribosome-TP-6076 complex: E-site tRNA 70S; tRNA-met 7s1g A 76 2.48 RF00005 URS000044E875_562 35165456,31588918,29872003,20383002,32881101 0030533 0006412 562 gcccggauagcucaguagguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((...(.......[....).....((.......))........((.((..]....)).))))))))).... wild-type Escherichia coli stalled ribosome with antibiotic linezolid; tRNA(PHE) 7s1i A 76 2.48 RF00005 URS000044E875_562 35165456 0030533 0006412 562 gcccggauagcucaguagguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((...(.......[....).....((.......))........((.((..]....)).))))))))).... Wild-type Escherichia coli stalled ribosome with antibiotic radezolid; tRNA(PHE) 7s1k A 76 2.42 RF00005 URS000044E875_562 35165456 0030533 0006412 562 gcccggauagcucaguagguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((...(.......[....).....((.......))........((.((..]....)).))))))))).... Cfr-modified Escherichia coli stalled ribosome with antibiotic radezolid; tRNA(PHE) 7sa4 5 77 2.55 RF00005 URS000041AF00_562 35858322 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Damaged 70S ribosome with PrfH bound; P-tRNA, E-tRNA 7sa4 6 77 2.55 RF00005 URS000041AF00_562 35858322 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Damaged 70S ribosome with PrfH bound; P-tRNA, E-tRNA 7sam A 169 4.3 RF01084 URS00023119EC_12302 34793227 0045069 12302 cgugguugacacgcagaccucuuacaagagugucuaggugccuuugagaguuacucuuugcucucuucggaagaacccuuagggguucgugcaugggcuugcauagcaagucuuagaaugcggguaccguacaguguugaaaaacacuguaaaucucuaaaagagacca <<<<.....>>>>.<<<<<<<<....>>>>.>>>>.<<<<<<<..<<<<<<..(((((.>>>>>>.......<<<<<<<..>>>>>>>..<<<<<<<<<<<.....>>>>>>>....>>>>>>>>>>>.<<<<<<<<<....>>>>>>>>>.........))))).... ((((.....)))).((((((((....)))).)))).((((((...((((((..[[[[..)))))).......((((((....))))))..((((.(.((((.....)))).).....)))).)))))).(((((((((....)))))))))..........]]]].... tRNA-like Structure from Brome Mosaic Virus; Viral RNA 7sc6 C 169 5.51 RF01084 URS00023119EC_12302 34793227 0045069 12302 cgugguugacacgcagaccucuuacaagagugucuaggugccuuugagaguuacucuuugcucucuucggaagaacccuuagggguucgugcaugggcuugcauagcaagucuuagaaugcggguaccguacaguguugaaaaacacuguaaaucucuaaaagagacca <<<<.....>>>>.<<<<<<<<....>>>>.>>>>.<<<<<<<...<<<<<..((((((>>>>>........<<<<<<....>>>>>>..<<<<<<<<<<<.....>>>>>>>....>>>>>>>>>>>.<<<<<<<<<....>>>>>>>>>........)))))).... ((((.....)))).((((((((....)))).)))).(((((((..((((((..[[[[[[)))))).......((((((....))))))..((((.(.((((.....)))).).....))))))))))).(((((.(.(....).).)))))........]]]]]].... tRNA-like Structure from Brome Mosaic Virus Bound to Tyrosyl-tRNA Synthetase from Phaseolus vulgaris. Conformation: Bound State 1.; tRNA-like structure from brome mosaic virus RNA 3 7scq C 169 6.0 RF01084 URS00023119EC_12302 34793227 0045069 12302 cgugguugacacgcagaccucuuacaagagugucuaggugccuuugagaguuacucuuugcucucuucggaagaacccuuagggguucgugcaugggcuugcauagcaagucuuagaaugcggguaccguacaguguugaaaaacacuguaaaucucuaaaagagacca <<<<.....>>>>.<<<<<<<<....>>>>.>>>>.<<..<<<...<<<<<..(((((.>>>>>........<<<<<<....>>>>>>...<<<<<<<<<<.....>>>>>>>....>>>.>>>..>>.<<<<<<<<<....>>>>>>>>>.........))))).... ((((.....)))).((((((((....)))).)))).[[...[...[[[[[[..((((((]]]]]].......((((((....))))))...(((.((((((.....)))))).....)))..]...]].(((((((((....)))))))))........)))))).... tRNA-like Structure from Brome Mosaic Virus Bound to Tyrosyl-tRNA Synthetase from Phaseolus vulgaris. Conformation: Bound State 2.; tRNA-like structure from brome mosaic virus RNA 3. 7ss9 6 77 3.9 RF00005 URS000041AF00_83333 34903725 0030533 0006412 83333 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))..... Late translocation intermediate with EF-G partially dissociated (Structure V); tRNA fMet 7ss9 5 77 3.9 RF00005 URS00002E063F_83333 34903725 0030533 0006412 83333 cggcgaguagcgcagcuugguagcgcaacugguuugggaccagugggucggagguucgaauccucucucgccgacca .<<<<<...<<<<.........>>>>.<<<<<<.....>>>>>>.....<..<<.......>.>.>.>>>>>..... .((((((..((((.........))))..(((((.....))))).......((((.......)))).))))))..... Late translocation intermediate with EF-G partially dissociated (Structure V); tRNA Pro 7ssd 6 77 3.3 RF00005 URS000041AF00_83333 34903725 0030533 0006412 83333 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))..... Mid translocation intermediate with EF-G bound with GDP (Structure IV); tRNA fMet 7ssd 5 77 3.3 RF00005 URS00002E063F_83333 34903725 0030533 0006412 83333 cggcgaguagcgcagcuugguagcgcaacugguuugggaccagugggucggagguucgaauccucucucgccgacca .<<<<<<..<<<<.........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((.........)))).((((((.....)))))).....(((((.......)))))))))))..... Mid translocation intermediate with EF-G bound with GDP (Structure IV); tRNA Pro 7ssl 5 77 3.8 RF00005 URS00002E063F_83333 34903725 0030533 0006412 83333 cggcgaguagcgcagcuugguagcgcaacugguuugggaccagugggucggagguucgaauccucucucgccgacca ..<<<<...<<<<.........>>>>..<<<<<.....>>>>>.......<<<.........>>>..>>>>...... ..(((((..((((.........)))).(((((.......)))))......((((.......)))).)))))...... Pre translocation intermediate with EF-G bound to GDP and Pi (Structure III); tRNA Pro 7ssl 6 77 3.8 RF00005 URS000041AF00_83333 34903725 0030533 0006412 83333 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>.>....<<<<<.......>>>>>>>>>>>..... .((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))..... Pre translocation intermediate with EF-G bound to GDP and Pi (Structure III); tRNA fMet 7ssn 5 77 3.2 RF00005 URS00002E063F_83333 34903725 0030533 0006412 83333 cggcgaguagcgcagcuugguagcgcaacugguuugggaccagugggucggagguucgaauccucucucgccgacca <<<<<<<..<<<<.........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... .((((((...(((......[..)))..(((((.......)))))......((((..]....)))).))))))..... Pre translocation 70S ribosome with A/P* and P/E tRNA (Structure II-B); tRNA Pro 7ssn 6 77 3.2 RF00005 URS000041AF00_83333 34903725 0030533 0006412 83333 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))..... Pre translocation 70S ribosome with A/P* and P/E tRNA (Structure II-B); tRNA fMet 7sso 5 77 3.2 RF00005 URS00002E063F_83333 34903725 0030533 0006412 83333 cggcgaguagcgcagcuugguagcgcaacugguuugggaccagugggucggagguucgaauccucucucgccgacca <<<<<<<..<<<<.........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Pre translocation 70S ribosome with A/A and P/E tRNA (Structure II-A); tRNA Pro 7sso 6 77 3.2 RF00005 URS000041AF00_83333 34903725 0030533 0006412 83333 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((.........)))).(((((.......))))).....(.(((.......))).)))))))..... Pre translocation 70S ribosome with A/A and P/E tRNA (Structure II-A); tRNA fMet 7ssw 6 77 3.8 RF00005 URS000041AF00_83333 34903725 0030533 0006412 83333 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))..... Late translocation intermediate with EF-G dissociated (Structure VI); tRNA fMet 7ssw 5 77 3.8 RF00005 URS00002E063F_83333 34903725 0030533 0006412 83333 cggcgaguagcgcagcuugguagcgcaacugguuugggaccagugggucggagguucgaauccucucucgccgacca .<<<<<...<<<<.........>>>>.<<<<<<.....>>>>>>.....<..<<.......>.>.>.>>>>>..... ...((((..((((.........))))..(((((.....))))).......((((.......)))).))))....... Late translocation intermediate with EF-G dissociated (Structure VI); tRNA Pro 7st2 6 77 2.9 RF00005 URS000041AF00_83333 34903725 0030533 0006412 83333 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((.........)))).(((((.......))))).......(((.......)))..))))))..... Post translocation, non-rotated 70S ribosome with EF-G dissociated (Structure VII); tRNA fMet 7st2 5 77 2.9 RF00005 URS00002E063F_83333 34903725 0030533 0006412 83333 cggcgaguagcgcagcuugguagcgcaacugguuugggaccagugggucggagguucgaauccucucucgccgacca <<<<<<<..<<<<.........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((......[..)))).(((((.......)))))......((((..]....)))).))))))).... Post translocation, non-rotated 70S ribosome with EF-G dissociated (Structure VII); tRNA Pro 7st6 5 77 3.0 RF00005 URS00002E063F_83333 34903725 0030533 0006412 83333 cggcgaguagcgcagcuugguagcgcaacugguuugggaccagugggucggagguucgaauccucucucgccgacca <<<<<<<..<<<<.........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))).... Pre translocation, non-rotated 70S ribosome (Structure I); tRNA Pro 7st6 7 77 3.0 RF00005 URS000041AF00_83333 34903725 0030533 0006412 83333 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<...<<<<.........>>>>.<<<.<........>>>>.....<<<<<.......>>>>>.>>>>>..... .(((((...((((......[..))))..((.(........))).............]..........)))))..... Pre translocation, non-rotated 70S ribosome (Structure I); tRNA fMet 7st6 6 77 3.0 RF00005 URS000041AF00_83333 34903725 0030533 0006412 83333 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Pre translocation, non-rotated 70S ribosome (Structure I); tRNA fMet 7st7 6 77 3.2 RF00005 URS000041AF00_83333 34903725 0030533 0006412 83333 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))..... Pre translocation intermediate stalled with viomycin and bound with EF-G in a GDP and Pi state (Structure III-vio); tRNA fMet 7st7 5 76 3.2 RF00005 URS0000EC976D_83333 34903725 0030533 0006412 83333 cggcgaguagcgcagcuugguagcgcaacugguuugggaccagugggucggagguucgaauccucucucgccgacc <<<<<<<..<<<<.........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>... (((((((..((((......[..)))).(((((.......)))))......((((..]....)))).)))))))... Pre translocation intermediate stalled with viomycin and bound with EF-G in a GDP and Pi state (Structure III-vio); tRNA Pro 7suk L2 169 3.99 RF01846 URS0000B21E09_4932 35650250,35650250 0006396 0005730 4932 gucgacguacuucauaggaucauuucuauaggaaucgucacucuuugacucuucaaaagagccacugaauccaacuugguugaugagucccauaaccuuuguacccagugagaaaccguauggcgcgaugaucuacccauggguggguacaaauggcagucugacaagu .........................................................................<<<<<......<..........<<<<<<<<<<...........<....>............<<<....>>>.>>>>>>>>.>>....>...>>>>> .........................................................................(((((......(..........((((((...(..(...(....(....)...)......).(((....))).)...)))).))....)...))))) Structure of Bfr2-Lcp5 Complex Observed in the Small Subunit Processome Isolated from R2TP-depleted Yeast Cells; U3 snoRNA 7syr i 75 3.6 RF00005 URS0000326EAC_9986 35822879 0030533 0006412 9986 agcagaguggcgcagcggaagcgugcugggcccauaacccagaggucgauggaucgaaaccauccucugcuacca <<<<<<<..<<<<.......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((....[..)))).(((((.......))))).....(((((..]....)))))))))))).... Structure of the wt IRES eIF2-containing 48S initiation complex, closed conformation. Structure 12(wt).; Met-tRNA-i-Met 7sys i 75 3.5 RF00005 URS0000326EAC_9986 35822879 0030533 0006412 9986 agcagaguggcgcagcggaagcgugcugggcccauaacccagaggucgauggaucgaaaccauccucugcuacca <<<<<<<..<<<<.......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((...(((....[..)))..(((((.......))))).....(((((..]....)))))))))))).... Structure of the delta dII IRES eIF2-containing 48S initiation complex, closed conformation. Structure 12(delta dII).; Met-tRNA-i-Met 7syt i 75 4.4 RF00005 URS0000326EAC_9986 35822879 0030533 0006412 9986 agcagaguggcgcagcggaagcgugcugggcccauaacccagaggucgauggaucgaaaccauccucugcuacca <<<<<<<..<<<<.......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((...(((....[..)))..(((((.......))))).....(((((..]....)))))))))))).... Structure of the wt IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(wt); Met-tRNA-i-Met 7syu i 75 4.6 RF00005 URS0000326EAC_9986 35822879 0030533 0006412 9986 agcagaguggcgcagcggaagcgugcugggcccauaacccagaggucgauggaucgaaaccauccucugcuacca <<<<<<<..<<<<.......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((....[..)))).(((((.......))))).....(((((..]....)))))))))))).... Structure of the delta dII IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(delta dII); Met-tRNA-i-Met 7syv i 75 3.9 RF00005 URS0000326EAC_9986 35822879 0030533 0006412 9986 agcagaguggcgcagcggaagcgugcugggcccauaacccagaggucgauggaucgaaaccauccucugcuacca .<<<<<<..<<<<.......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))).... Structure of the wt IRES eIF5B-containing pre-48S initiation complex, open conformation. Structure 14(wt); Met-tRNA-i-Met 7syw i 75 3.7 RF00005 URS0000326EAC_9986 35822879 0030533 0006412 9986 agcagaguggcgcagcggaagcgugcugggcccauaacccagaggucgauggaucgaaaccauccucugcuacca <<<<<<<..<<<<.......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))).... Structure of the wt IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(wt); Met-tRNA-i-Met 7syx i 75 3.7 RF00005 URS0000326EAC_9986 35822879 0030533 0006412 9986 agcagaguggcgcagcggaagcgugcugggcccauaacccagaggucgauggaucgaaaccauccucugcuacca <<<<<<<..<<<<.......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))).... Structure of the delta dII IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(delta dII); Met-tRNA-i-Met 7too APTN 77 2.7 RF00005 URS000041AF00_562 35589706 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20; tRNAfMet 7top APTN 77 2.4 RF00005 URS000041AF00_562 35589706 0030533 0006412 562 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))..... Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20; tRNAfMet 7toq PTRN 77 3.1 RF00005 URS000041AF00_83333 35589706 0030533 0006412 83333 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR; tRNAfMet 7tor ETRN 77 2.9 RF00005 URS000041AF00_83333 35589706 0030533 0006412 83333 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(.(((..]....))).)))))))..... Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20; tRNAfMet bound to E-site 7tor PTRN 74 2.9 RF00005 URS000041AF00_83333 35589706 0030533 0006412 83333 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaa .<..<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>..>.. .....((..((.(......[..).)).(((((.......))))).....(((((..]....)))))))...... Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20; tRNAfMet bound to E-site 7tql 3 75 3.2 RF00005 URS0000326EAC_9606 35732735 0030533 0006412 9606 agcagaguggcgcagcggaagcgugcugggcccauaacccagaggucgauggaucgaaaccauccucugcuacca <<<<<<<....<.........>...<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..................(((((.......))))).....((.((.......)).))))))))).... CryoEM structure of the human 40S small ribosomal subunit in complex with translation initiation factors eIF1A and eIF5B.; Human Met-tRNAiMet 7trc B 92 3.3 RF00024 URS00004A7003_9606 35418675 2.7.7.49 0003720,0003964,0000332,0005515,0044877,0070182,0071987 0007004,0071456,2000773 0000333,0000781,0005737,0015030,0005697,0090661 9606 ccugcggcggccgcaggaagaggaacggagcgaguccccgcggcgcgauucccugagcugugggacgugcacccaggacucggcucacacau <<<<<<<<.>>>>>>>>..........<<<<<<<<<<.....<<<<<...<<<........>>>.>>>>>.....>>>>>>.>>>>...... (((((((().)))))))..........((((((((((.....(((((...(((........))).))))).....)))))).))))...... Human telomerase H/ACA RNP at 3.3 Angstrom; Telomerase RNA, partial sequence 7trd B 217 3.3 RF00024 URS00004A7003_9606 35418675 2.7.7.49 0003720,0003964,0000332,0005515,0044877,0070182,0071987 0007004,0071456,2000773 0000333,0000781,0005737,0015030,0005697,0090661 9606 ggccauuuuuugucuaacccuaacugagaagggcguaggcgccgugcuuuugcuccccgcgcgcuguuuuucucgcugacuuucagcgggcggaaaagccucggccugccgccuuccgagcaaacaaaaaaugucagcugcuggccgaggccgcggucggcccggggcuucuccggaggcacccacugccaccgcgaagaguugggcucugucagcc <<<<<.........................<<<<<<<<<<.....<<<<<<.....<<<<.<<<<<........(((((((((>>>>>.>>>>>>>>>>....>>>>>.>>>>>..............))).))))))...>>>>>..<<<<<<<<<.<<<..<<<<<<<<....>>>>>.>>>...>>>>>>>>>.<<<<.....>>>>....>>> (((((.........................(((((..(((.(.(..(((((.....((((.(((((.......[[[[[[[[[[))))).))))))))).)..))))...)))))..............]]].]]]]]].].)))))..(((((((((.(((..((((((.(....).))).)))...))))))))).((((.....))))....))) Human telomerase catalytic core structure at 3.3 Angstrom; Telomerase RNA, partial sequence 7tre B 217 3.5 RF00024 URS00004A7003_9606 35418675 2.7.7.49 0003720,0003964,0000332,0005515,0044877,0070182,0071987 0007004,0071456,2000773 0000333,0000781,0005737,0015030,0005697,0090661 9606 ggccauuuuuugucuaacccuaacugagaagggcguaggcgccgugcuuuugcuccccgcgcgcuguuuuucucgcugacuuucagcgggcggaaaagccucggccugccgccuuccgagcaaacaaaaaaugucagcugcuggccgaggccgcggucggcccggggcuucuccggaggcacccacugccaccgcgaagaguugggcucugucagcc <<<<<..........................<<<<<<<<<.....<<<<<<.....<<<<.<<<<<.......[(((((((((>>>>>.>>>>>>>>>>....>>>>>.>>>>...............))).)))))).].>>>>>..<<<.<<<<<.<<<..<<<<<<<<....>>>>>.>>>...>>>>>>>>..<<<<.....>>>>....>>> (((((..........................(((((((((.(.(.((((((.....((((.(((((.......[[[[[[[[.[))))).)))))))))))..)))))).))))...............].].]]]]]].].)))))..(((.(((((.(((..((((((.(....).))).)))...))))))))..((((.....))))....))) Human telomerase catalytic core with shelterin protein TPP1; Telomerase RNA, partial sequence 7trf B 217 3.7 RF00024 URS00004A7003_9606 35418675 2.7.7.49 0003720,0003964,0000332,0005515,0044877,0070182,0071987 0007004,0071456,2000773 0000333,0000781,0005737,0015030,0005697,0090661 9606 ggccauuuuuugucuaacccuaacugagaagggcguaggcgccgugcuuuugcuccccgcgcgcuguuuuucucgcugacuuucagcgggcggaaaagccucggccugccgccuuccgagcaaacaaaaaaugucagcugcuggccgaggccgcggucggcccggggcuucuccggaggcacccacugccaccgcgaagaguugggcucugucagcc <<<<<.........................<<<<<<<<<<.....<<<<<<.....<<<<.<<<<<........(((((((((>>>>>.>>>>>>>>>>....>>>>>.>>>>>..............))).))))))...>>>>>..<<<<<<<<<.<<<..<<<<<<<<....>>>>>.>>>...>>>>>>>>>.<<<<.....>>>>....>>> (((((.........................(((((.((((.(.(..(((((.....((((.(((((.......[[[[[[[[[[))))).))))))))).)..)))))..)))))..............]]].]]]]]].].)))))..(((((((((.(((..((((((.(....).))).)))...))))))))).((((.....))))....))) Human telomerase catalytic core RNP with H2A/H2B; Telomerase RNA, partial sequence 7u2h 1w 73 2.55 RF00005 URS00003845FE_562 35766409 0030533 0006412 562 gcgggcgnaguucaagguagaacgagagcuucccaagcucuauacgagggnucgauucccuucgcccgcuccn <<<<<<<..<<<<......>>>>.<<<<<<.....>>>>>>....<<<<<.......>>>>>>>>>>>>.... (((((((..((((...[..)))).(((((.......))))).....((((..]....)))).))))))).... Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Gly-NH-tRNAgly, aminoacylated P-site fMet-NH-tRNAmet, and deacylated E-site tRNAgly at 2.55A resolution; A-site Aminoacyl-tRNA Gly-NH-tRNAgly 7u2h 1x 77 2.55 RF00005 URS000041AF00_562 35766409 0030533 0006412 562 cgcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaaccn .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Gly-NH-tRNAgly, aminoacylated P-site fMet-NH-tRNAmet, and deacylated E-site tRNAgly at 2.55A resolution; P-site Aminoacyl-tRNA fMet-NH-tRNAmet 7u2h 1y 73 2.55 RF00005 URS00003845FE_562 35766409 0030533 0006412 562 gcgggcgnaguucaagguagaacgagagcuucccaagcucuauacgagggnucgauucccuucgcccgcucca <<<<<<<..<<<<......>>>>.<<<<<<.....>>>>>>....<<<<<.......>>>>>>>>>>>>.... (((((((..((((......)))).(((((.......)))))....(((((.......)))))))))))).... Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Gly-NH-tRNAgly, aminoacylated P-site fMet-NH-tRNAmet, and deacylated E-site tRNAgly at 2.55A resolution; E-site Deacylated tRNAgly 7u2h 2w 72 2.55 RF00005 URS00003845FE_562 35766409 0030533 0006412 562 gcgggcgnaguucaaggagaacgagagcuucccaagcucuauacgagggnucgauucccuucgcccgcuccn <<<<<<<..<<<<.....>>>>.<<<<<<.....>>>>>>....<<<<<.......>>>>>>>>>>>>.... (((((.(..((((...[.)))).(((((.......))))).....((((..]....)))).).))))).... Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Gly-NH-tRNAgly, aminoacylated P-site fMet-NH-tRNAmet, and deacylated E-site tRNAgly at 2.55A resolution; A-site Aminoacyl-tRNA Gly-NH-tRNAgly 7u2h 2x 77 2.55 RF00005 URS000041AF00_562 35766409 0030533 0006412 562 cgcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaaccn .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Gly-NH-tRNAgly, aminoacylated P-site fMet-NH-tRNAmet, and deacylated E-site tRNAgly at 2.55A resolution; P-site Aminoacyl-tRNA fMet-NH-tRNAmet 7u2h 2y 73 2.55 RF00005 URS00003845FE_562 35766409 0030533 0006412 562 gcgggcgnaguucaagguagaacgagagcuucccaagcucuauacgagggnucgauucccuucgcccgcucca <<<<<<<..<<<<......>>>>.<<<<<<.....>>>>>>....<<<<<.......>>>>>>>>>>>>.... (((((((..((((......)))).(((((.......)))))....(((((.......)))))))))))).... Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Gly-NH-tRNAgly, aminoacylated P-site fMet-NH-tRNAmet, and deacylated E-site tRNAgly at 2.55A resolution; E-site Deacylated tRNAgly 7u2i 1w 73 2.55 RF00005 URS00003845FE_562 35766409 0030533 0006412 562 gcgggcgnaguucaagguagaacgagagcuucccaagcucuauacgagggnucgauucccuucgcccgcuccn <<<<<<<..<<<<......>>>>.<<<<<<.....>>>>>>....<<<<<.......>>>>>>>>>>>>.... (((((((..((((...[..)))).(((((.......)))))....(((((..]....)))))))))))).... Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Gly-NH-tRNAgly, aminoacylated P-site fMet-NH-tRNAmet, deacylated E-site tRNAgly, and chloramphenicol at 2.55A resolution; A-site Aminoacyl-tRNA Gly-NH-tRNAgly 7u2i 1x 77 2.55 RF00005 URS000041AF00_562 35766409 0030533 0006412 562 cgcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaaccn .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Gly-NH-tRNAgly, aminoacylated P-site fMet-NH-tRNAmet, deacylated E-site tRNAgly, and chloramphenicol at 2.55A resolution; P-site Aminoacyl-tRNA fMet-NH-tRNAmet 7u2i 1y 73 2.55 RF00005 URS00003845FE_562 35766409 0030533 0006412 562 gcgggcgnaguucaagguagaacgagagcuucccaagcucuauacgagggnucgauucccuucgcccgcucca <<<<<<<..<<<<......>>>>.<<<<<<.....>>>>>>....<<<<<.......>>>>>>>>>>>>.... (((((((..((((......)))).(((((.......))))).....((((.......)))).))))))).... Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Gly-NH-tRNAgly, aminoacylated P-site fMet-NH-tRNAmet, deacylated E-site tRNAgly, and chloramphenicol at 2.55A resolution; E-site Deacylated tRNAgly 7u2i 2w 72 2.55 RF00005 URS00003845FE_562 35766409 0030533 0006412 562 gcgggcgnaguucaaggagaacgagagcuucccaagcucuauacgagggnucgauucccuucgcccgcuccn <<<<<<<..<<<<.....>>>>.<<<<<<.....>>>>>>....<<<<<.......>>>>>>>>>>>>.... (((((((..((((...[.)))).(((((.......))))).....((((..]....)))).))))))).... Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Gly-NH-tRNAgly, aminoacylated P-site fMet-NH-tRNAmet, deacylated E-site tRNAgly, and chloramphenicol at 2.55A resolution; A-site Aminoacyl-tRNA Gly-NH-tRNAgly 7u2i 2x 77 2.55 RF00005 URS000041AF00_562 35766409 0030533 0006412 562 cgcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaaccn .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Gly-NH-tRNAgly, aminoacylated P-site fMet-NH-tRNAmet, deacylated E-site tRNAgly, and chloramphenicol at 2.55A resolution; P-site Aminoacyl-tRNA fMet-NH-tRNAmet 7u2i 2y 73 2.55 RF00005 URS00003845FE_562 35766409 0030533 0006412 562 gcgggcgnaguucaagguagaacgagagcuucccaagcucuauacgagggnucgauucccuucgcccgcucca <<<<<<<..<<<<......>>>>.<<<<<<.....>>>>>>....<<<<<.......>>>>>>>>>>>>.... (((((((..((((......)))).(((((.......))))).....((((.......)))).))))))).... Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Gly-NH-tRNAgly, aminoacylated P-site fMet-NH-tRNAmet, deacylated E-site tRNAgly, and chloramphenicol at 2.55A resolution; E-site Deacylated tRNAgly 7u2j 1w 73 2.55 RF00005 URS00003845FE_562 35766409 0030533 0006412 562 gcgggcgnaguucaagguagaacgagagcuucccaagcucuauacgagggnucgauucccuucgcccgcuccn <<<<<<<..<<<<......>>>>.<<<<<<.....>>>>>>....<<<<<.......>>>>>>>>>>>>.... (((((((..((((...[..)))).(((((.......))))).....((((..]....)))).))))))).... Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Gly-NH-tRNAgly, peptidyl P-site fMAC-NH-tRNAmet, deacylated E-site tRNAgly, and chloramphenicol at 2.55A resolution; A-site Aminoacyl-tRNA Gly-NH-tRNAgly 7u2j 1x 77 2.55 RF00005 URS000041AF00_562 35766409 0030533 0006412 562 cgcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaaccn .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Gly-NH-tRNAgly, peptidyl P-site fMAC-NH-tRNAmet, deacylated E-site tRNAgly, and chloramphenicol at 2.55A resolution; P-site Peptidyl-tRNA fMAC-NH-tRNAmet RNA-part 7u2j 1y 73 2.55 RF00005 URS00003845FE_562 35766409 0030533 0006412 562 gcgggcgnaguucaagguagaacgagagcuucccaagcucuauacgagggnucgauucccuucgcccgcucca <<<<<<<..<<<<......>>>>.<<<<<<.....>>>>>>....<<<<<.......>>>>>>>>>>>>.... (((((((..((((......)))).(((((.......)))))....(((((.......)))))))))))).... Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Gly-NH-tRNAgly, peptidyl P-site fMAC-NH-tRNAmet, deacylated E-site tRNAgly, and chloramphenicol at 2.55A resolution; E-site Deacylated tRNAgly 7u2j 2w 72 2.55 RF00005 URS00003845FE_562 35766409 0030533 0006412 562 gcgggcgnaguucaaggagaacgagagcuucccaagcucuauacgagggnucgauucccuucgcccgcuccn <<<<<<<..<<<<.....>>>>.<<<<<<.....>>>>>>....<<<<<.......>>>>>>>>>>>>.... (((((((..((((...[.)))).(((((.......))))).....((((..]....)))).))))))).... Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Gly-NH-tRNAgly, peptidyl P-site fMAC-NH-tRNAmet, deacylated E-site tRNAgly, and chloramphenicol at 2.55A resolution; A-site Aminoacyl-tRNA Gly-NH-tRNAgly 7u2j 2x 77 2.55 RF00005 URS000041AF00_562 35766409 0030533 0006412 562 cgcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaaccn .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Gly-NH-tRNAgly, peptidyl P-site fMAC-NH-tRNAmet, deacylated E-site tRNAgly, and chloramphenicol at 2.55A resolution; P-site Peptidyl-tRNA fMAC-NH-tRNAmet RNA-part 7u2j 2y 73 2.55 RF00005 URS00003845FE_562 35766409 0030533 0006412 562 gcgggcgnaguucaagguagaacgagagcuucccaagcucuauacgagggnucgauucccuucgcccgcucca <<<<<<<..<<<<......>>>>.<<<<<<.....>>>>>>....<<<<<.......>>>>>>>>>>>>.... (((((((..((((......)))).(((((.......)))))....(((((.......)))))))))))).... Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Gly-NH-tRNAgly, peptidyl P-site fMAC-NH-tRNAmet, deacylated E-site tRNAgly, and chloramphenicol at 2.55A resolution; E-site Deacylated tRNAgly 7ucj 2 72 3.1 RF00005 URS00023359AF_9986 35679869 0030533 0006412 9986 gagcagaguggcgcaggagcgugcugggcccaunacccagaggcgauggaucgaaaccauccucugcuacca <....<...<...........>.<<<<<.......>>>>>....<<<<<.......>>>>>.>....>.... .........(......[....).(((((.......)))))....(((((..]....)))))........... Mammalian 80S translation initiation complex with mRNA and Harringtonine; P-site tRNA 7uck 2 72 2.8 RF00005 URS00023359AF_9986 35679869 0030533 0006412 9986 gagcagaguggcgcaggagcgugcugggcccaunacccagaggcgauggaucgaaaccauccucugcuacca <....<...<...........>.<<<<<.......>>>>>....<<<<<.......>>>>>.>....>.... .........(......[....).(((((.......)))))....(((((..]....)))))........... 80S translation initiation complex with ac4c(-1) mRNA and Harringtonine; P-site tRNA 7ug7 Dt 77 2.58 RF00005 URS000057545F_562 35500116 0030533 0006412 562 cgcggggnggagcagcccggnagcucgucgggnucauaacccgaagnucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... 70S ribosome complex in an intermediate state of translocation bound to EF-G(GDP) stalled by Argyrin B; tRNA-fMet 7ug7 Pt 76 2.58 RF00005 URS00005AA258_562 35500116 0030533 0006412 562 gcccgganagcucagncgguagagcaggggauugaanauccccgunnccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>><<<<<<<.....>>>>>>.>...<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).((((.........)))).....(((((..]....)))))))))))).... 70S ribosome complex in an intermediate state of translocation bound to EF-G(GDP) stalled by Argyrin B; tRNA-Phe 7uim B 541 3.1 RF00029 URS0002617790_39491 36356138 0000373 39491 guuugcgcgccaugggcgcgcucuaacggguguaagucccgaacaugcccagguagugggaaauguauagccgaacagcaagggugucuacugugagguggaaucugaaggaagcuguaagcgaaucucugguccgacggacagaaaucgcauauaaggcuaggcuucggugauaagcuggcaaagaacagugaagucuaauaacugaagcagaguaaaugcggcggauauauggagagaaagagcgugcaccuuaagcguggaggucucacagagguuagccuaguaacaacgaacugugagaagucagccgagcccauaguagugaagaagucucuguaauggggauggagcgaaggggcgaacaaucauaaugucucguauugcagaaaugacaacaucugccguaaccaaucggguaaaagguggucaaaucaagcgagacggaaaggaguugauugaaccgccguauacggaaccguacguacgguggugugagaggucggaauuucucaauuaagagaaauucuuccuacucgau .....<<<<<...<<<<<<<<<<<..<<<<.......>>>>.<<<<.<<<.....((>>>..>>>>...<<....<<<<..<<<<.<<<<<<....>>>>>>>>>>.......>>>>...>>...<<<<<.<<<<<...........<<<<<......<<<..<<<<<...<<<..<<<<........>>>>...>>>.....)).>>>>>..>>>...>>>>>>>>>>....>>>>>...>>>>>>>>>.>>....>>>>>..<.<<<<<<<<<<<<..>>>>.<......>...>>>>>>>>..>....<..<<<<......<<......<<<<<<.....>>>>>>...>>....>>>>>..<<<<<<.......<<<<.<<<<.<<..<<<<..<<<<<.<<<........>>>.....>>>>>>>>>..>>..>>>.>>>>>.......>.>>>>>.<<<<<<<<<<<<<....>>>..>>>>>>>>>>..<<<<<<..<<<<<<<<<<......>>>>>>>>>>.>>>.>>>... ..[<.((((({..((((.((((((..((((.......)))).((((.(((.....[[)))..))))...((....((((..((((.((((((....))))))))))...>}..))))...))...(((((((((((.(.....)...(((((......(((..(((((...((...((((........))))....)).....]].)))))..)))...))))))))))...))))))...)))))).)).))...])))))(...((((..(((((....))).((....))...))..))))...)(.....((((.(....((......(((((.......)))))...))...)))))...((((.(.......((((.((((.....((((..(((((.(((........))).....)))))))))......)))).))))........).)))).(((((((((((((....)))..))))))))))..((((((..((((((((((......)))))))))).))).)))..) CryoEM Structure of an Group II Intron Retroelement (apo-complex); E.r IIC Intron 7uin B 541 2.8 RF00029 URS0002617790_39491 36356138 0000373 39491 guuugcgcgccaugggcgcgcucuaacggguguaagucccgaacaugcccagguagugggaaauguauagccgaacagcaagggugucuacugugagguggaaucugaaggaagcuguaagcgaaucucugguccgacggacagaaaucgcauauaaggcuaggcuucggugauaagcuggcaaagaacagugaagucuaauaacugaagcagaguaaaugcggcggauauauggagagaaagagcgugcaccuuaagcguggaggucucacagagguuagccuaguaacaacgaacugugagaagucagccgagcccauaguagugaagaagucucuguaauggggauggagcgaaggggcgaacaaucauaaugucucguauugcagaaaugacaacaucugccguaaccaaucggguaaaagguggucaaaucaagcgagacggaaaggaguugauugaaccgccguauacggaaccguacguacgguggugugagaggucggaauuucucaauuaagagaaauucuuccuacucgau .....<<<<<...<<<<<<<<<<<..<<<<.......>>>>.<<<<.<<<....(((>>>..>>>>...<<....<<<<..<<<<.<<<<<<....>>>>>>>>>>.......>>>>...>>...<<<<<<<<<<<...........<<<<<......<<<..<<<<<...<<<..<<<<........>>>>...>>>.....)))>>>>>..>>>...>>>>>>>>>>...>>>>>>...>>>>>>>>>.>>....>>>>>..<.<<<<<<<<<<<<..>>>>.<......>...>>>>>>>>..>....<..<<<<......<<......<<<<<<.....>>>>>>...>>....>>>>>..<<<<<<...<.<.<<<<.<<<<.<<..<<<<..<<<<<.<<<........>>>.....>>>>>>>>>..>>..>>>>.>>>>.>..>...>>>>>>.<<<<<<<<<<<<<....>>>..>>>>>>>>>>..<<<<<<..<<<<<<<<<<......>>>>>>>>>>.>>>.>>>... ..[<.((((({..(((((((((((..((((.......)))).((((.(((.....[[)))..))))...((....((((..((((.((((((....))))))))))...>}..))))...))...(((((((((((.(.....)...(((((.....[(((..(((((...(((..((((.]......))))...))).....]].)))))..)))...))))))))))...))))))...))))))))).))...])))))(...((((((((((((..)))).((....))...))))))))...)(.....((((.(....((......((((((.....))))))...))...)))))...((((((.......((((.((((.((..((((..(((((.(((........))).....)))))))))..))..)))).))))........)))))).(((((((((((((....)))..))))))))))..((((((..((((((((((......)))))))))).))).)))..) CryoEM Structure of an Group II Intron Retroelement; E.r IIC Intron 7umc A 70 NA RF02340 URS00023359CE_11053 35750488 0039694 11053 ggagugguuagucuacguggaccgacaagacuucggucgaaucggaaggaaacuuaacguaguucuaacc .....<<<<<<.<<<<<<...<<<<...<<<....>>>...>>>><<<....>>>.>>>>>>..>>>>>> .....((((((.((((((...((((...(((....)))...)))).((....))..))))))..)))))) DENV1 SLA RNA (DenvSLATL); RNA (70-MER) 7unr v 76 2.9 RF00005 URS000041AF00_562 0030533 0006412 562 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-A); P-site initiator tRNA 7unu v 76 2.9 RF00005 URS000041AF00_562 0030533 0006412 562 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-B); P-site initiator tRNA 7unv v 76 2.7 RF00005 URS000041AF00_562 0030533 0006412 562 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-A); P-site initiator tRNA 7unw v 76 2.6 RF00005 URS000041AF00_562 0030533 0006412 562 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-B); P-site initiator tRNA 7uo0 B 373 3.4 RF00010 URS0000803A36_562 36045135 3.1.26.5 0004526 0008033 0030680 562 gaagcugaccagacagucgccgcuucgucgucguccucuucgggggagacgggcggaggggaggaaaguccgggcuccauagggcagggugccagguaacgccugggggggaaacccacgaccagugcaacagagagcaaaccgccgauggcccgcgcaagcgggaucagguaagggugaaagggugcgguaagagcgcaccgcgcggcugguaacaguccguggcacgguaaacuccacccggagcaaggccaaauagggguucauaagguacggcccguacugaacccggguaggcugcuugagccagugagcgauugcuggccuagaugaaugacuguccacgacagaacccggcuuaucggucaguuuc <<<.<<<<<<...((((..<<.<<<<<.<<<<..<<<.<...>>>>.>>>>..>>>>>.>>........<<<<<<<..........<.<<.<<<<.......>>>>..<......>..................................<<<<........>>>.>.................<.<<.........>>.>...<<<<<<<....>>>.>>>>...............>>.>..>>...<<<............................................>>>......<<<<<<........>>>>>>...........))))............>>>>>......>>>>>>.>>> (((.(((.((...[[[...((.((.((.((((.(((((....)))))))))..)).)).)).{....(.((((((..(...[.[..(((((.(((.......))).(((......)).)......................(..(....(((((((....))))).))..)....).......((.((.........)).))((.((((((....))).))).).)...........))))).).)....(((......((((((.....((((..].])))).)))))).....))).......(((((..(....)..)))))............]]].......}....)))))).....)).))).))) E.coli RNaseP Holoenzyme with Mg2+; RNase P RNA 7uo0 C 82 3.4 RF00005 URS000261771D_562 36045135 0030533 0006412 562 ucuggggcuacguagcucaguugguuagagcacaucacucauaaugauggggucacagguucgaaucccgucguagccacca .....<<<<<<...<<<<.........>>>>.<<<<.........>>>>.....<<.............>>.>>>>>>.... .....((((((([.((((.]...[...)))).((((.........)))).....((.((..]....)).))))))))).... E.coli RNaseP Holoenzyme with Mg2+; Precursor tRNA substrate G(-1) G(-2) 7uo1 B 373 3.2 RF00010 URS0000803A36_562 36045135 3.1.26.5 0004526 0008033 0030680 562 gaagcugaccagacagucgccgcuucgucgucguccucuucgggggagacgggcggaggggaggaaaguccgggcuccauagggcagggugccagguaacgccugggggggaaacccacgaccagugcaacagagagcaaaccgccgauggcccgcgcaagcgggaucagguaagggugaaagggugcgguaagagcgcaccgcgcggcugguaacaguccguggcacgguaaacuccacccggagcaaggccaaauagggguucauaagguacggcccguacugaacccggguaggcugcuugagccagugagcgauugcuggccuagaugaaugacuguccacgacagaacccggcuuaucggucaguuuc .<<<<<<<<<.<<<<<<<.<<.<<<<<<<<<<..<<<......>>>.>>>>.>>>>>>.>>.{...[[.(((((((.....<<<<.<<<<<<<<<<.....>>>>>.<<......>>..<<.....<..............<...........<<<....>>>.............>......<<<<<.........>>>>>......<<......>>............>....>>>>>>>..))...((((.......[[........((((.>>>>))))....]]......))))......<<<<<<<<....>>>>>>>>..........>>>>>>>.....}....)))))]]....>>>>>>>>>. ..(.((((((.(((((...((.((((((((((.(((.(....).))))))).)))))).)).{...[[.[[[[[(..(...[[[..((((((.(((.....))).).((......))..(.................................(((....)).)...................((.((.........)).)).....(...(...)....)...............)))))))..)...((((..................(((..]]]))).............))))....(.(((((.((....)).))))))...........))))).....}....]]]]]]]....)))))).).. E.coli RNaseP Holoenzyme with Mg2+; E.coli RNase P RNA 7uo1 C 82 3.2 RF00005 URS000261773C_562 36045135 0030533 0006412 562 ucuauggcuacguagcucaguugguuagagcacaucacucauaaugauggggucacagguucgaaucccgucguagccacca .....<<<<<<<..<<<<.........>>>>.<<<<.........>>>>.....<<.<<.......>>.>>>>>>>>>.... .....(((((((..((((.....[...)))).((((.........)))).....((.((..]....)).))))))))).... E.coli RNaseP Holoenzyme with Mg2+; Precursor tRNA substrate U(-1) and A(-2) 7uo2 B 271 3.1 RF00010 URS000261772A_562 36045135 3.1.26.5 0004526 0008033 0030680 562 gaagcugaccagacagucgccgcuucgucgucguccucuucgggggagacgggcggaggggaggaaaguccgggcuccauagggcagggugccagguaacgccugggggggaaacccacgaccaguaaacuccacccggagcaaggccaaauagggguucauaagguacggcccguacugaacccggguaggcugcuugagccagugagcgauugcuggccuagaugaaugacuguccacgacagaacccggcuuaucggucaguuucccu <<<<<<<<<<.[.((....<<.<<<<<.<<<<.<<<<<....>>>>>>>>>..>>>>>.>>.{...<<.<<<<<<<<<...<<<<.<<<<<<<<<<.....>>>>>.<<......>>..<...<<<..>>>>>>>>>>>>>...<<<<.......((.(...........>>>>......).))......>>>>......<<<<<<<<....>>>>>>>>.............))]......}....>>>>>>>....>>>>>>>>>>... ((((((((((.{.......((.(((((.((((.(((((....)))))))))..))))).)).[...((.(((((((((...[[[[.((((((((((.....)))))((((....))).)(...(((..)))))))))))))....(((......(((.((.....(.((.]]]])).).)).))).....))).......((((((((....))))))))...............}......]....)))))))....))))))))))... E.coli RNaseP Holoenzyme with Mg2+; RNase P RNA 7uo5 B 373 3.1 RF00010 URS0000803A36_562 36045135 3.1.26.5 0004526 0008033 0030680 562 gaagcugaccagacagucgccgcuucgucgucguccucuucgggggagacgggcggaggggaggaaaguccgggcuccauagggcagggugccagguaacgccugggggggaaacccacgaccagugcaacagagagcaaaccgccgauggcccgcgcaagcgggaucagguaagggugaaagggugcgguaagagcgcaccgcgcggcugguaacaguccguggcacgguaaacuccacccggagcaaggccaaauagggguucauaagguacggcccguacugaacccggguaggcugcuugagccagugagcgauugcuggccuagaugaaugacuguccacgacagaacccggcuuaucggucaguuuc ..<<<<<<<<...[..[..<<.<<<<<.<<<.................>>>..>>>>>.>>.{...<<.<<<<<<<<<...((((.<<<<<<<<<<.....>>>>>.<<......>>..<<..............................<.<<<....>>>>...................<<<<<.........>>>>>...<<<<<<....>>>.>>>.............>>>>>>>>>>>...<<<<................<<<<<.))))>>>>>...........>>>>......<<<<<<<......>>>>>>>..........]...].......}....>>>>>>>....>>>>>>>>.. .(((((((((..[[.....((.(((((.(((...((((....))))..)))..))))).)).{...((.(((((((((....[[[.(((((.((((.....)))).(((......)).)......(...............(..(........(((....))).......)....).......(((((.........)))))((.((((((....))).))).).).......)...)))))))))...((((...........(.....((.(.]]].).)).)..........))))......((((((((....))))))))..............]](...).}....)))))))....))))))))). E.coli RNaseP Holoenzyme with Mg2+; RNase P RNA 7uq6 B 86 2.951 RF00005 URS00023359C4_1462 0030533 0006412 1462 ncggaaguaguucagugguagaacaccggguggaaccccaggaaacuggcccgggucgcgcggguucgagucccgucuuccgcucc <<<<<<<..<<<<.......>>>>.<<<<<.......<<<<....>>>>>>>>>.....<<<<<.......>>>>>>>>>>>>... (((((((..((((....[..)))).(((((.......((((....))))))))).....(((((..]....))))))))))))... tRNA T-box antiterminator fusion, construct #4; RNA (86-MER) 7ur5 v 90 2.6 RF01852 URS0002349D67_256318 35882385 0030533 0006412 256318 ggaggggaacuucuaucuggugauagacgggaacucuaaauuccuugaaaugccucgccgcauuggguucgauucccuuccccuccgcca <<<<<<<<<..<<<<<<....>>>>>>.<<<<<.......>>>>>...<<<<<......>>>>><<<.......>>>>>>>>>>>>.... (((((((((..((((((..[.))))))((((((.......))))).).(((((......)))))(((..]....)))))))))))).... allo-tRNAUTu1 in the A, P, and E sites of the E. coli ribosome; allo-tRNAUTu1 7ur5 y 90 2.6 RF01852 URS0002349D67_256318 35882385 0030533 0006412 256318 ggaggggaacuucuaucuggugauagacgggaacucuaaauuccuugaaaugccucgccgcauuggguucgauucccuuccccuccgcca <<<<<<<<<..<<<<<<....>>>>>>.<<<<<.......>>>>>...<<<<<......>>>>><<<.......>>>>>>>>>>>>.... (((((((((..((((((..[.))))))((((((.......))))).).(((((......)))))(((..]....)))))))))))).... allo-tRNAUTu1 in the A, P, and E sites of the E. coli ribosome; allo-tRNAUTu1 7ur5 w 90 2.6 RF01852 URS0002349D67_256318 35882385 0030533 0006412 256318 ggaggggaacuucuaucuggugauagacgggaacucuaaauuccuugaaaugccucgccgcauuggguucgauucccuuccccuccgcca <<<<<<<<<..<<<<<<....>>>>>>.<<<<<.......>>>>>...<<<<<......>>>>><<<.......>>>>>>>>>>>>.... (((((((((..((((((..[.))))))((((((.......))))).).(((((......)))))(((..]....)))))))))))).... allo-tRNAUTu1 in the A, P, and E sites of the E. coli ribosome; allo-tRNAUTu1 7uri y 90 2.6 RF01852 URS0002349D68_256318 35882385 0030533 0006412 256318 ggaggggaaauucuaucuggugauagacgggaacucuaaauuccuugaaaugccucgccgcauuggguucgauucccuuccccuccgcca <<<<<<<<<..<<<<<<....>>>>>>.<<<<<.......>>>>>...<<<<<......>>>>><<<.......>>>>>>>>>>>>.... (((..((((..((((((..[.))))))((((((.......))))).).(((((......)))))(((..]....)))))))..))).... allo-tRNAUTu1A in the A site of the E. coli ribosome; Allo-tRNAUTu1A 7urm v 90 3.0 RF01852 URS0002349D68_256318 35882385 0030533 0006412 256318 ggaggggaaauucuaucuggugauagacgggaacucuaaauuccuugaaaugccucgccgcauuggguucgauucccuuccccuccgcca <<<<<<<<<..<<<<<<....>>>>>>.<<<<<.......>>>>>...<<<<<......>>>>><<<.......>>>>>>>>>>>>.... (((((((((..((((((..[.))))))((((((.......))))).).(((((......)))))(((..]....)))))))))))).... allo-tRNAUTu1A in the P site of the E. coli ribosome; allo-tRNAUTU1A 7uvt A 386 3.9 RF00028 URS0002311974_5911 36026457 0000372 5911 gagggaaaaguuaucaggcaugcaccugguagcuagucuuuaaaccaauagauugcaucgguuuaaaaggcaagaccgucaaauugcgggaaaggggucaacagccguucaguaccaagucucaggggaaacuuugagauggccuugcaaaggguaugguaauaagcugacggacaugguccuaaccacgcagccaaguccuaagucaacagaucuucuguugauauggaugcaguucacagacuaaaugucggucggggaagauguauucuucucauaagauauagucggaccucuccuuaaugggagcuagcggaugaagugaugcaacacuggagccgcugggaacuaauuuguaugcgaaaguauauugauuaguuuuggag ........<<<<<<<<<...(((..>>>>>>>>>.<<<<<<<<<<<......<<<<<<.>>>>>>.>>>>>..<<<<<.<....<<<<<<...<<<<<<.....<<<.<<<<.<<...<<<<<<<<......>>>>>>>>..<<..)))..>>.....>>......>>>>>>>....>>>>>>..>>.>>>><....<<<<...<<<<<<<<<...>>>>>>>>>..>>>>....>.....(((((...>.>>>>>.<<<<<<<.....>>>>>>>........)))))...((.<<<<<....>>>>><<<<<<<....<<<<>>>>>>>>>>....>>>>>>>.<<<<<<<<.<<<<<......>>>>>.>>>>>>>>..)).. ........(((((((((...{{{..))))))))).(.(((((((((....(.[.[[[[))))))).))).)..(((((.(....((((((...((((((.....(((.((((.(((..(((((((.(....).)))))))..((..}}.}.))....)))......)))))))....))))))..)).))))(.(..((((....(((((((.....)))))))...))))...)).....[[[[[...).))))).(((((((.....)))))))........]]]]]...((.(((((....)))))(.(((((....((((]]]].]))))....))))).).((((((((...(.((....)).)...))))))))..)).. Kinetically trapped misfolded state of the Tetrahymena ribozyme; RNA (386-MER) 7uvv v 77 2.5 RF00005 URS00002D670D_480119 37192172 0030533 0006412 480119 ggcuaugnagcucaguuggnuagagcaccgcacucauaaugcgggggucacaagnucaagucucgucauagccacca <<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<.<<.......>>.>>>>>>>>>.... (((((((..((((.........)))).(((((.......))))).....((.((.......)).))))))))).... A. baumannii ribosome-Streptothricin-F complex: 70S with P-site tRNA; tRNA-met 7uvw v 77 2.37 RF00005 URS00002D670D_480119 37192172 0030533 0006412 480119 ggcuaugnagcucaguuggnuagagcaccgcacucauaaugcgggggucacaagnucaagucucgucauagccacca <<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<.<<.......>>.>>>>>>>>>.... (((((((..((((.........)))).(((((.......))))).....((.((.......)).))))))))).... A. baumannii ribosome: 70S with E-site tRNA; tRNA-met 7uvy v 77 2.39 RF00005 URS00002D670D_480119 37192172 0030533 0006412 480119 ggcuaugnagcucaguuggnuagagcaccgcacucauaaugcgggggucacaagnucaagucucgucauagccacca <<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<.<<.......>>.>>>>>>>>>.... (((((((..((((.........)))).(((((.......))))).....((.((.......)).))))))))).... A. baumannii ribosome-Streptothricin-D complex: 70S with P-site tRNA; tRNA-met 7uvz v 77 2.21 RF00005 URS00002D670D_480119 37192172 0030533 0006412 480119 ggcuaugnagcucaguuggnuagagcaccgcacucauaaugcgggggucacaagnucaagucucgucauagccacca <<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<.<<.......>>.>>>>>>>>>.... (((((((..((((.........)))).(((((.......))))).....((.((.......)).))))))))).... A. baumannii ribosome-Streptothricin-D complex: 70S with E-site tRNA; tRNA-met 7uxa E 78 3.28 RF00005 URS00006314D1_32630 37231153 0030533 0006412 32630 ggcucuguggcgcaauggauagcgcauuggacuucuagagcaauucaaagguuguggguucgaaucccaccagagucg <<<<<<<..<<<<........>>>>.<<<<.<<<...>>>....>>>>.....<<<<<.......>>>>>>>>>>>>. (((((((..((((........)))).((((((((...)))...))))).....(((((.......)))))))))))). Human tRNA Splicing Endonuclease Complex bound to pre-tRNA-ARG; RNA (78-MER) 7uy5 B 156 3.5 RF00025 URS0000402983_5911 35831498 2.7.7.49 0003720 0007004 0000333 5911 cccgcuuaauucauucagaucuguaauagaacugucauucaaccccaaaaaucuagugcugauauaaccuucaccaauuagguucaaauaagugguaaugcgggacaaaagacuaucgacauuugauacacuauuuaucaauggaugucuuauuuu <<<<<..........<<<.<<<<...>>>>.>>>...............................<<<<<..((((.((>>>>>.....)).))))...>>>>>..<..<<<<.<<<...<.<<<<<<.......>>>>>>>.>>>>>>>>..... (((((..........(((.((.......)).)))...............................(((((..[[[[..[))))).....]..]]]]...)))))....(((((.(((..(.(.(((((.......)))))).)))))))))..... Tetrahymena telomerase with CST; Telomerase RNA 7uy6 B 156 2.9 RF00025 URS0000402983_5911 35831498 2.7.7.49 0003720 0007004 0000333 5911 cccgcuuaauucauucagaucuguaauagaacugucauucaaccccaaaaaucuagugcugauauaaccuucaccaauuagguucaaauaagugguaaugcgggacaaaagacuaucgacauuugauacacuauuuaucaauggaugucuuauuuu <<<<<..........<<<.<<<.....>>>.>>>...............................<<<<<..((((.((>>>>>.....)).))))...>>>>>....<<<<<.<<....<.<<<<<<.......>>>>>>>..>>>>>>>..... (((((..........(((.(((.....))).)))...............................(((((..[[[[..[))))).....]..]]]]...)))))....(((((.((...(.(.(((((.......)))))).).)))))))..... Tetrahymena telomerase at 2.9 Angstrom resolution; Telomerase RNA 7uz0 A 87 3.03 RF00005 URS00023359B3_1462 0030533 0006412 1462 ncggaaguaguucagugguagaacaccuacuggcccgaaaggguggaaccccaguagggggucgcggguucgagucccgucuuccgc <<<<<<<..<<<<.......>>>>.<<<<<<<<<<<....>>>.......>>>>>>>>.....<<<<<.......>>>>>>>>>>>> (((((((..((((....[..)))).(((((((((((....))).......)))))))).....(((((..]....)))))))))))) AntiT-tRNA flip UCCA; AntiT-tRNA flip UCCA 7v99 R 243 3.54 RF00024 URS00004A7003_9606 34782750 2.7.7.49 0003720,0003964,0000332,0005515,0044877,0070182,0071987 0007004,0071456,2000773 0000333,0000781,0005737,0015030,0005697,0090661 9606 ggccauuuuuugucuaacccuaacugagaagggcguaggcgccgugcuuuugcuccccgcgcgcuguuuuucucgcugacuuucagcgggcggaaaagccucggccugccgccuugagcaaacaaaaaaugucagcugcuggcccccgaaccccgccuggaggccgcggucggcccggggcuucuccggaggcacccacugccaccgcgaagaguugggcucugucagccgcgggucucucgg <<<<<...........................<<<<<<<<.....<<<<<<......<<<.<<<<<........(((((((((>>>>>.>>>.>>>>>>....>>>>>.>>>..............))).))))))...>>>>>.<<<<...<<<<.....<<<.<<<<<.<<<..<<<<<<<<....>>>>>.>>>...>>>>>>>>..<<<<.....>>>>....>>>>>>>.....>>>> (((((........................(.((((.((((...(.((((((......(((..((((........[[[[[[[[.))))..))).)))))))...))))..)))).)............]].]]]]]]...))))).((((...((((.....(((((((((.(((..(((((.((....)).)).)))...))))))))).((((.....))))....))))))).....)))) catalytic core of human telomerase holoenzyme; Telomerase RNA component 7v9a R 146 3.94 RF00024 URS00004A7003_9606 34782750 2.7.7.49 0003720,0003964,0000332,0005515,0044877,0070182,0071987 0007004,0071456,2000773 0000333,0000781,0005737,0015030,0005697,0090661 9606 ggguugcggagggugggccugggaucccggggaccugcggcgggucaggccuuucaggccgcaggaagaggaacggagcgaguccccgcgcgcggcgcgauucccugagcugugggacgugcacccaggacucggcucacacaugc ...<<<<.....>>>>..<<<<<..>>>>>...<<<<<<<<<<<<...>>>>.....>>>>>>>>..........<<<<<<<<<<.............<..<<<<........>>>>..>.......>>>>>>.>>>>........ ......(.....)....(..(((())))..)...(((((((.((.(.).))......)))))).)..........((((((((((........(..(((..((((........))))..))).)...))))))).)))........ biogenesis module of human telomerase holoenzyme; Telomerase RNA component 7vnv A 78 1.9 RF00005 URS00023359C9_111955 35477761 0030533 0006412 111955 gggccngncnucuancnugguuaggacnccgccnunacaaggcggaggnnnugggnunnngucccagcgggcccacca <<<<<<<..<<<<..........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..(((.......[....))).(((((.......))))).....(((((..]....)))))))))))).... Crystal Structure of tRNAVal from Sulfolobus Tokodaii; RNA (78-MER) 7vnv B 78 1.9 RF00005 URS00023359C9_111955 35477761 0030533 0006412 111955 gggccngncnucuancnugguuaggacnccgccnunacaaggcggaggnnnugggnunnngucccagcgggcccacca <<<<<<<..<<<<..........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..(((.......[....))).(((((.......))))).....(((((..]....)))))))))))).... Crystal Structure of tRNAVal from Sulfolobus Tokodaii; RNA (78-MER) 7vnw A 78 2.61 RF00005 URS00023359C9_111955 35477761 0030533 0006412 111955 gggccngucnucuancnugguuaggacnccgccnunacaaggcggaggunnuggguunnngucccagcgggcccacca <<<<<<<..<<<<..........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..(((.......[....))).(((((.......))))).....(((((..]....)))))))))))).... Crystal Structure of tRNAVal from Sulfolobus Tokodaii(Dephosphorylated); RNA (78-MER) 7vnw B 78 2.61 RF00005 URS00023359C9_111955 35477761 0030533 0006412 111955 gggccngucnucuancnugguuaggacnccgccnunacaaggcggaggunnuggguunnngucccagcgggcccacca <<<<<<<..<<<<..........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..(((.......[....))).(((((.......))))).....(((((..]....)))))))))))).... Crystal Structure of tRNAVal from Sulfolobus Tokodaii(Dephosphorylated); RNA (78-MER) 7vpx H 130 3.0 RF00004 URS00003EE995_9606 38196034 0045131 0000348 0005686 9606 uaguaucuguucuuaucaguuuaauaucugauuccucgaggaggauuuuuggagcagggagauggaauaggagcuugcuccguccacuccacgcaucgaccugguauugcaguaccuccaggaacggugc ..............<<<<<.<....>.>>>>><<<<..>>>>...............<<<<.<<<<...<<<<....>>>>.>>>>>>>>..<<<<<<.<<<<<.............>>>>>..>>>>>> ..............(((((........)))))((((()))))...............(((..(((....((((....))))..))).)))..(((.((..((((.............))))...)).))) The cryo-EM structure of the human pre-A complex; U2 snRNA 7vpx L 164 3.0 RF00003 URS000032B6B6_9606 38196034 0030627 0000395 0005685 9606 auacuuaccuggcaggggagauaccaugaucacgaaggugguuuucccagggcgaggcuuauccauugcacuccggaugugcugaccccugcgauuuccccaaaugugggaaacucgacugcauaauuugugguagugggggacugcguucgcgcuuuccccug ...........<<<<.<<<<<.<<<<<..........>>>>>>>>>>.<<<<...<<<.<<<<<..........>>>>>.>>>...>>>>.<<<<<<<<<.......>>>>>>.>>>.>>>>...............<<<<<<..<<<....>>>..>>>>>>. ............(((.(((((..((((..........)))).))))).((((...(((.(((((..........))))).)))...))))..(.((((((.......))))))..)..)))................((((((..(((....)))..)))))). The cryo-EM structure of the human pre-A complex; U1 snRNA 7w59 B 84 3.6 RF00020 URS000075BAAE_9606 35705093 0000244,0000353 0005682,0046540 9606 gguuucucuucagaucgcauaaaucuuucgccuuuuacuaaagauuuccguggagaggaacaacccaauuuuuugaggccuugc .<<<<<<<<<<<........<<<<<<<<...........>>>>>>>>...>>>>>>>>>>>....................... .(((.(((((((....(...((((((((.(.......).)))))))).).))))))).)))....................... The cryo-EM structure of human pre-C*-I complex; U5 snRNA 7w59 F 97 3.6 RF00026 URS00001EC8D7_9606 35705093 0030621 0000244,0000353 0005688,0046540 9606 gugcucgcuucggcagcacauauacuaaaauuggaacgauacagagaagauuagcauggccccugcgcaaggaugacacgcaaauucgugaagcguu <<<<<.<<<..>>>>>>>>.....................................<<...<<<.....>>>....>>................... (((((.((....))))))).....................................((..((((.....)))..).))................... The cryo-EM structure of human pre-C*-I complex; U6 snRNA 7w59 H 140 3.6 RF00004 URS00003EE995_9606 35705093 0045131 0000348 0005686 9606 aucgcuucucggccuuuuggcuaagaucaaguguaguaucuguucuuuuaauaucguccucuaccgaggacaauauuaaggauuuuuggagcagggagccacgcaucgaccugguauugcaguaccuccaggaacggugc ...............................................<<<<<<<.<<<<<<....>>>>>>.>>>>>>>...............<......><<<<<<.<<<<<.............>>>>>..>>>>>> ...............................................(((((((.((((((....)))))).)))))))...............(..()..)(((.((.(((((.............)))))..)).))) The cryo-EM structure of human pre-C*-I complex; U2 snRNA 7w5a B 84 3.6 RF00020 URS000075BAAE_9606 35705093 0000244,0000353 0005682,0046540 9606 gguuucucuucagaucgcauaaaucuuucgccuuuuacuaaagauuuccguggagaggaacaacccaauuuuuugaggccuugc .<<<<<<<<<<<........<<<<<<<<...........>>>>>>>>...>>>>>>>>>>>....................... .(((.(((((((....(...((((((((.(.......).)))))))).).))))))).)))....................... The cryo-EM structure of human pre-C*-II complex; U5 snRNA 7w5a F 97 3.6 RF00026 URS00001EC8D7_9606 35705093 0030621 0000244,0000353 0005688,0046540 9606 gugcucgcuucggcagcacauauacuaaaauuggaacgauacagagaagauuagcauggccccugcgcaaggaugacacgcaaauucgugaagcguu <<<<<.<<<..>>>>>>>>.....................................<<...<<<.....>>>....>>................... (((((.((....))))))).....................................((..((((.....)))..).))................... The cryo-EM structure of human pre-C*-II complex; U6 snRNA 7w5a H 140 3.6 RF00004 URS00003EE995_9606 35705093 0045131 0000348 0005686 9606 aucgcuucucggccuuuuggcuaagaucaaguguaguaucuguucuuuuaauaucguccucuaccgaggacaauauuaaggauuuuuggagcagggagccacgcaucgaccugguauugcaguaccuccaggaacggugc ...............................................<<<<<<..<<<<<<....>>>>>>..>>>>>>...............<......><<<<<<.<<<<<.............>>>>>..>>>>>> ...............................................(((((((.((((((....)))))).)))))))...............(..()..)(((.((.(((((.............)))))..)).))) The cryo-EM structure of human pre-C*-II complex; U2 snRNA 7w5b B 84 4.3 RF00020 URS000075BAAE_9606 35705093 0000244,0000353 0005682,0046540 9606 gguuucucuucagaucgcauaaaucuuucgccuuuuacuaaagauuuccguggagaggaacaacccaauuuuuugaggccuugc .<<<<<<<<<<<........<<<<<<<<...........>>>>>>>>...>>>>>>>>>>>....................... .(((.(((((((....(...((((((((.(.......).)))))))).).))))))).)))....................... The cryo-EM structure of human C* complex; U5 snRNA 7w5b F 97 4.3 RF00026 URS00001EC8D7_9606 35705093 0030621 0000244,0000353 0005688,0046540 9606 gugcucgcuucggcagcacauauacuaaaauuggaacgauacagagaagauuagcauggccccugcgcaaggaugacacgcaaauucgugaagcguu <<<<<.<<<..>>>>>>>>.....................................<<...<<<.....>>>....>>................... (((((.((....))))))).....................................((..((((.....)))..).))................... The cryo-EM structure of human C* complex; U6 snRNA 7w5b H 140 4.3 RF00004 URS00003EE995_9606 35705093 0045131 0000348 0005686 9606 aucgcuucucggccuuuuggcuaagaucaaguguaguaucuguucuuuuaauaucguccucuaccgaggacaauauuaaggauuuuuggagcagggagccacgcaucgaccugguauugcaguaccuccaggaacggugc ...............................................<<<<<<..<<<<<<....>>>>>>..>>>>>>...............<......><<<<<<.<<<<<.............>>>>>..>>>>>> ...............................................(((((((.((((((....)))))).)))))))...............(..()..)(((.((.(((((.............)))))..)).))) The cryo-EM structure of human C* complex; U2 snRNA 7wi9 V 50 2.98 RF02977 URS000268136C_381 36620887 0010468 381 ngcgugguccguucaacucguuccucgaaagaggaacuacgggagacgcc <<<<<..<<<<<.......<<<<<<<....>>>>>>>.>>>>>..>>>>> (((((..(((((.......(((((((....))))))).)))))..))))) The THF-II riboswitch bound to THF and soaking with SeUrea; RNA (50-MER) 7wia V 50 3.22 RF02977 URS000268137F_381 36620887 0010468 381 ngcgugguccguucaagucguuccucgaaagaggaacuacgggagacgcc <<<<<..<<<<<.......<<<<<<<....>>>>>>>.>>>>>..>>>>> (((((..(((((.......(((((((....))))))).)))))..))))) The apo-form of THF-II C22G riboswitch; RNA (50-MER) 7wib V 50 2.83 RF02977 URS000268136C_381 36620887 0010468 381 ngcgugguccguucaacucguuccucgaaagaggaacuacgggagacgcc <<<<<..<<<<<.......<<<<<<<....>>>>>>>.>>>>>..>>>>> (((((..(((((.......(((((((....))))))).)))))..))))) The THF-II riboswitch bound to THF; RNA (50-MER) 7wie V 50 2.9 RF02977 URS000268136C_381 36620887 0010468 381 ngcgugguccguucaacucguuccucgaaagaggaacuacgggagacgcc <<<<<..<<<<<.......<<<<<<<....>>>>>>>.>>>>>..>>>>> (((((..(((((.......(((((((....))))))).)))))..))))) The THF-II riboswitch bound to 7DG; RNA (50-MER) 7wif V 50 2.86 RF02977 URS000268136C_381 36620887 0010468 381 ngcgugguccguucaacucguuccucgaaagaggaacuacgggagacgcc <<<<<..<<<<<.......<<<<<<<....>>>>>>>.>>>>>..>>>>> (((((..(((((.......(((((((....))))))).)))))..))))) The THF-II riboswitch bound to H4B; RNA (50-MER) 7wii V 50 2.75 RF02977 URS000268136C_381 36620887 0010468 381 ngcgugguccguucaacucguuccucgaaagaggaacuacgggagacgcc <<<<<..<<<<<.......<<<<<<<....>>>>>>>.>>>>>..>>>>> (((((..(((((.......(((((((....))))))).)))))..))))) The THF-II riboswitch bound to NPR; RNA (50-MER) 7xd3 N 423 4.05 RF00028 URS00026813BF_5911 0000372 5911 cucucuaaauagcaauauuuaccuuuggagggaaaaguuaucaggcaugcaccugguagcuagucuuuaaaccaauagauugcaucgguuuaaaaggcaagaccgucaaauugcgggaaaggggucaacagccguucaguaccaagucucaggggaaacuuugagauggccuugcaaaggguaugguaauaagcugacggacaugguccuaaccacgcagccaaguccuaagucaacagaucuucuguugauauggaugcaguucacagacuaaaugucggucggggaagauguauucuucucauaagauauagucggaccucuccuuaaugggagcuagcggaugaagugaugcaacacuggagccgcugggaacuaauuuguaugcgaaaguauauugauuaguuuuggaguacucguaag <<<<<<<<<..<.<<...>>.>.>>>>>>>>>...<<<<<<<<<<..(((.>>>>>>>>>>.<<<<<<<<<<<......<<<<<<.>>>>>.>>>>>>..<<<<<.<....<<<<<<...<<<<<<.....<<<.<<<<.<<...<<<<<<<<<....>>>>>>>>>..<...)))...>.....>>......>>>>>>>....>>>>>>..>>.>>>><<...<<<<...<<<<<<<<<...>>>>>>>>>..>>>>...>>.....(((((...>.>>>>>.<<<<<<<.....>>>>>>>........))))).((((.<<<<<....>>>>><<<<<<<....<<<<>>>>>>>>>>....>>>>>>>.<<<<<<<<.<<<<<......>>>>>.>>>>>>>>..)).....))..... (((((((((..(.((...)).).)))))))))...((((((((((..{{{.)))))))))).(((((((((((....(.[[[[[[))))))).)))))..(((((.(....((((((...((((((.....(((.((((.(((..(((((((((....)))))))))..(...}}.}..)....)))......)))))))....))))))..)).))))((...((((...((((((((.....))))))))..))))...))...[.[[[[[...).))))).(((((((.....)))))))........]]]]]]((((.(((((....)))))(((((((....((((]]]]]]))))....))))))).((((((((.((((.(....).)))).))))))))..)).....))..... The relaxed pre-Tet-S1 state of wild-type Tetrahymena group I intron with 6nt 3'/5'-exon; The relaxed pre-Tet-S1 state molecule of co-transcriptional folded wild-type Tetrahymena group I intron with 6nt 3'/5'-exon 7xd4 N 423 3.89 RF00028 URS00026813BE_5911 0000372 5911 cucucuaaauagcaauauuuaccuuuggagggaaaaguuaucaggcaugcaccugguagcuagucuuuaaaccaauagauugcaucgguuuaaaaggcaagaccgucaaauugcgggaaaggggucaacagccguucaguaccaagucucaggggaaacuuugagauggccuugcaaaggguaugguaauaagcugacggacaugguccuaaccacgcagccaaguccuaagucaacagaucuucuguugauauggaugcaguucacagacuaaaugucggucggggaagauguauucuucucauaagauauagucggaccucuccuuaaugggagcuagcggaugaagugaugcaacacuggagccgcugggaacuaauuuguaugcgaaaguauauugauuaguuuuggaguacucguaag <<<<<<<<<..<.<<...>>.>.>>>>>>>>>...<<<<<<<<<<..(((.>>>>>>>>>>.<<<<<<<<<<<......<<<<<<.>>>>>.>>>>>>..<<<<<.<....<<<<<<...<<<<<<.....<<<.<<<<.<<...<<<<<<<<<....>>>>>>>>>..<...)))...>.....>>......>>>>>>>....>>>>>>..>>.>>>><<...<<<<...<<<<<<<<<...>>>>>>>>>..>>>>...>>.....(((((...>.>>>>>.<<<<<<<.....>>>>>>>........))))).((((.<<<<<....>>>>><<<<<<<....<<<<>>>>>>>>>>....>>>>>>>.<<<<<<<<.<<<<<......>>>>>.>>>>>>>>..)).....))..... (((((.(((..(.((...)).).))).)))))...((((((((((..{{{.)))))))))).(((((((((((....(.[[[[[[))))))).)))))..(((((.(....((((((...((((((.....(((.((((.(((..(((((((((....)))))))))..(...}}.}..)....)))......)))))))....))))))..)).)))).(...((((...((((((((.....))))))))..))))...)....[.[[[[[...).))))).(((((((.....)))))))........]]]]]]((((.(((((....)))))(((((((.....(((]]]]]]))).....))))))).((((((((.((((.(....).)))).))))))))..)).....))..... The intermediate pre-Tet-S1 state of wild-type Tetrahymena group I intron with 6nt 3'/5'-exon; Co-transcriptional folded wild-type Tetrahymena group I intron with 6nt 3'/5'-exon 7xd5 N 400 2.84 RF00028 URS00026813DA_5911 0000372 5911 uuuggagggaaaaguuaucaggcaugcaccugguagcuagucuuuaaaccaauagauugcaucgguuuaaaaggcaagaccgucaaauugcgggaaaggggucaacagccguucaguaccaagucucaggggaaacuuugagauggccuugcaaaggguaugguaauaagcugacggacaugguccuaaccacgcagccaaguccuaagucaacagaucuucuguugauauggaugcaguucacagacuaaaugucggucggggaagauguauucuucucauaagauauagucggaccucuccuuaaugggagcuagcggaugaagugaugcaacacuggagccgcugggaacuaauuuguaugcgaaaguauauugauuaguuuuggaguacucguaag ............<<<<<<<<<<..[((.>>>>>>>>>>.<<<<<<<<<<<......<<<<<<.>>>>>>.>>>>>..<<<<<.<....<<<<<<...<<<<<<.....<<<.<<<<.<<...<<<<<<<<<....>>>>>>>>>..<<..)).].>>.....>>......>>>>>>>....>>>>>>..>>.>>>><<...<<<<...<<<<<<<<<...>>>>>>>>>..>>>>...>>.....(((((...>.>>>>>.<<<<<<<.....>>>>>>>........))))).((((.<<<<<....>>>>><<<<<<<....<<<<>>>>>>>>>>....>>>>>>>.<<<<<<<<.<<<<<......>>>>>.>>>>>>>>..)).....))..... ............((((((((((..{{{.)))))))))).(((((((((((....(.[[[[[[))))))).)))))..(((((.(....((((((...((((((.....(((.((((.(((..(((((((((....)))))))))..((..}}.}.))....)))......)))))))....))))))..)).))))((...((((...(((((((((...)))))))))..))))...))...[.[[[[[...).))))).(((((((.....)))))))........]]]]]]((((.(((((....)))))(((((((.....(((]]]]]]))).....))))))).(((((((..((((.(....).))))..)))))))..)).....))..... The Tet-S2 state of wild-type Tetrahymena group I intron with 30nt 3'/5'-exon; The Tet-S2 state molecule of co-transcriptional folded wild-type Tetrahymena group I intron with 30nt 3'/5'-exon (intron and 3'-exon) 7xd6 N 434 2.84 RF00028 URS00026813D8_5911 0000372 5911 auagcaauauuuaccuuuggagggaaaaguuaucaggcaugcaccugguagcuagucuuuaaaccaauagauugcaucgguuuaaaaggcaagaccgucaaauugcgggaaaggggucaacagccguucaguaccaagucucaggggaaacuuugagauggccuugcaaaggguaugguaauaagcugacggacaugguccuaaccacgcagccaaguccuaagucaacagaucuucuguugauauggaugcaguucacagacuaaaugucggucggggaagauguauucuucucauaagauauagucggaccucuccuuaaugggagcuagcggaugaagugaugcaacacuggagccgcugggaacuaauuuguaugcgaaaguauauugauuaguuuuggaguacucguaagguagccaaaugccucguca ............<<.............<<<<<<<<<<..[((.>>>>>>>>>>.<<<<<<<<<<<......<<<<<<.>>>>>>.>>>>>..<<<<<.<....<<<<<<...<<<<<<.....<<<.<<<<.<<...<<<<<<<<<....>>>>>>>>>..<<..)).].>>.....>>......>>>>>>>....>>>>>>..>>.>>>><<...<<<<...<<<<<<<<<...>>>>>>>>>..>>>>...>>.....(((((...>.>>>>>.<<<<<<<.....>>>>>>>........))))).((((.<<<<<....>>>>><<<<<<<....<<<<>>>>>>>>>>....>>>>>>>.<<<<<<<<..<<<<......>>>>..>>>>>>>>..)).....)).....>>................. ............((.............((((((((((..{{{.)))))))))).(((((((((((....(.[[[[[[))))))).)))))..(((((.(....((((((...((((((.....(((.((((.(((..(((((((((....)))))))))..((..}}.}.))....)))......)))))))....))))))..)).))))((...((((...(((((((((...)))))))))..))))...))...[.[[[[[...).))))).(((((((.....)))))))........]]]]]]((((.(((((....)))))(((((((.....(((]]]]]]))).....))))))).((((((((..(((((....)))))..))))))))..)).....)).....))..(.....)........ The Tet-S2 state with a pseudoknotted 4-way junction of wild-type Tetrahymena group I intron with 30nt 3'/5'-exon; The Tet-S2 state with a pseudoknotted 4-way junction molecule of co-transcriptional folded wild-type Tetrahymena group I intron with 30nt 3'/5'-exon (intron and 3'-exon) 7xd7 N 405 3.02 RF00028 URS00026813BB_5911 0000372 5911 auauuuaccuuuggagggaaaaguuaucaggcaugcaccugguagcuagucuuuaaaccaauagauugcaucgguuuaaaaggcaagaccgucaaauugcgggaaaggggucaacagccguucaguaccaagucucaggggaaacuuugagauggccuugcaaaggguaugguaauaagcugacggacaugguccuaaccacgcagccaaguccuaagucaacagaucuucuguugauauggaugcaguucacagacuaaaugucggucggggaagauguauucuucucauaagauauagucggaccucuccuuaaugggagcuagcggaugaagugaugcaacacuggagccgcugggaacuaauuuguaugcgaaaguauauugauuaguuuuggaguacucg .<.<<........>>.>....<<<<<<<<<<..(((.>>>>>>>>>>.<<<<<<<<<<<......<<<<<<.>>>>>.>>>>>>..<<<<<.<....<<<<<<...<<<<<<.....<<<.<<<<.<<...<<<<<<<<<....>>>>>>>>>..<<..)))..>>.....>>......>>>>>>>....>>>>>>..>>.>>>><<...<<<<...<<<<<<<<<...>>>>>>>>>..>>>>...>>.....(((((...>.>>>>>.<<<<<<<.....>>>>>>>........))))).((((.<<<<<....>>>>><<<<<<<....<<<<>>>>>>>>>>....>>>>>>>.<<<<<<<<...<<<......>>>...>>>>>>>>..)).....)). .(.(..(....)..).)....((((((((((..{{{.)))))))))).(((((((((((....(.[[[[[[))))))).)))))..(((((.(....((((((...((((((.....(((.((((.(((..(((((((((....)))))))))..((..}}.}.))....)))......)))))))....))))))..)).))))((...((((...(((((((((...)))))))))..))))...))...[.[[[[[...).))))).(((((((.....)))))))........]]]]]](((..(((((....)))))(((((((.....(((]]]]]]))).....))))))).((((((((.(.(..(....)..).).))))))))..)......)). The pre-Tet-C state of wild-type Tetrahymena group I intron with 30nt 3'/5'-exon; The pre-Tet-C state molecule of co-transcriptional folded wild-type Tetrahymena group I intron with 30nt 3'/5'-exon 7xjz B 73 3.9 RF00005 URS00026813F8_4530 36912079 0030533 0006412 4530 ncgagcguaguucaaugguaaaacaucuccuugccaaggagaagauacggguucgauucccgccgcucgcccc <<<<<<<..<<<.........>>>.<<<<<<.....>>>>>>.....<<<<.......>>>>.>>>>>>>... (((((((..(((.....[...))).(((((.......))))).....((((..]....)))).)))))))... Cryo-EM strucrture of Oryza sativa plastid glycyl-tRNA synthetase in complex with tRNA (tRNA binding state); tRNA(gly) 7xk0 B 71 3.59 RF00005 URS00026813F8_4530 36912079 0030533 0006412 4530 ncgagcguaguucaaugguaaaacaucuccuugccaaggagaagauacggguucgauucccgccgcucgcc <<<<<<<..<<<.........>>>.<<<<<<.....>>>>>>.....<<<<.......>>>>.>>>>>>>. (((((((..((......[....)).(((((.......))))).....((((..]....)))).))))))). Cryo-EM strucrture of Oryza sativa plastid glycyl-tRNA synthetase in complex with tRNA (tRNA locked state); tRNA(gly) 7xk1 B 73 4.3 RF00005 URS00026813F8_4530 36912079 0030533 0006412 4530 ncgagcguaguucaaugguaaaacaucuccuugccaaggagaagauacggguucgauucccgccgcucgcccc <<<<<<<..<<<.........>>>.<<<<<<.....>>>>>>.....<<<<.......>>>>.>>>>>>>... (((((((..(((.....[...))).(((((.......))))).....((((..]....)))).)))))))... Cryo-EM structure of Oryza sativa plastid glycyl-tRNA synthetase in complex with two tRNAs (both in tRNA binding states); tRNA(gly) 7xk1 D 73 4.3 RF00005 URS00026813F8_4530 36912079 0030533 0006412 4530 ncgagcguaguucaaugguaaaacaucuccuugccaaggagaagauacggguucgauucccgccgcucgcccc <<<<<<<..<<<.........>>>.<<<<<<.....>>>>>>.....<<<<.......>>>>.>>>>>>>... (((((((..(((.....[...))).(((((.......))))).....((((..]....)))).)))))))... Cryo-EM structure of Oryza sativa plastid glycyl-tRNA synthetase in complex with two tRNAs (both in tRNA binding states); tRNA(gly) 7xnx CC 75 2.7 RF00005 URS0000E60BA3_9606 36259929 0030533 0006412 9606 uccgauauagcguaacggcuaucacaucacgcuuucaccguggagaccgggguucgacuccccguaucggagcca <<<<<<<..<.<..........>.>.<<<<<.......>>>>>....<<<<<.......>>>>>>>>>>>>.... (((((((..(.(.....[....).).(((((.......)))).)...(((((..]....)))))))))))).... High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells; tRNA 7xsk N 388 3.53 RF00028 URS0001A24B65_5911 36067294 0000372 5911 ggagggaaaaguuaucaggcaugcaccugguagcuagucuuuaaaccaauagauugcaucgguuuaaaaggcaagaccgucaaauugcgggaaaggggucaacagccguucaguaccaagucucaggggaaacuuugagauggccuugcaaaggguaugguaauaagcugacggacaugguccuaaccacgcagccaaguccuaagucaacagaucuucuguugauauggaugcaguucacagacuaaaugucggucggggaagauguauucuucucauaagauauagucggaccucuccuuaaugggagcuagcggaugaagugaugcaacacuggagccgcugggaacuaauuuguaugcgaaaguauauugauuaguuuuggagu .........<<<<<<<<<<..(((.>>>>>>>>>>.<<<<<<<<<<<......<<<<<<.>>>>>.>>>>>>..<<<<<.<....<<<<<<...<<<<<<.....<<<.<<<<.<<...<<<<<<<<<....>>>>>>>>>..<<..)))..>>.....>>......>>>>>>>....>>>>>>..>>.>>>><<...<<<<...<<<<<<<<<...>>>>>>>>>..>>>>...>>.....(((((...>.>>>>>.<<<<<<<.....>>>>>>>........)))))...((.<<<<<....>>>>><<<<<<<....<<<<>>>>>>>>>>....>>>>>>>.<<<<<<<<.<<<<<......>>>>>.>>>>>>>>..))... .........((((((((((..{{{.)))))))))).(((((((((((....(.[[[[[[))))))).)))))..(((((.(....((((((...((((((.....(((.((((.(((..(((((((((....)))))))))..((..}}.}.))....)))......)))))))....))))))..)).))))((...((((...(((((((((...)))))))))..))))...))...[.[[[[[...).))))).(((((((.....)))))))........]]]]]]...(.(((((....)))))(.(((((....((((]]]]]]))))....))))).).(((((((....((((....))))....)))))))...)... Misfolded Tetrahymena ribozyme conformation 1; RNA (388-MER) 7xsl N 388 3.84 RF00028 URS0001A24B65_5911 36067294 0000372 5911 ggagggaaaaguuaucaggcaugcaccugguagcuagucuuuaaaccaauagauugcaucgguuuaaaaggcaagaccgucaaauugcgggaaaggggucaacagccguucaguaccaagucucaggggaaacuuugagauggccuugcaaaggguaugguaauaagcugacggacaugguccuaaccacgcagccaaguccuaagucaacagaucuucuguugauauggaugcaguucacagacuaaaugucggucggggaagauguauucuucucauaagauauagucggaccucuccuuaaugggagcuagcggaugaagugaugcaacacuggagccgcugggaacuaauuuguaugcgaaaguauauugauuaguuuuggagu .........<<<<<<<<<<..(((.>>>>>>>>>>.<<<<<<<<<<<......<<<<<<.>>>>>.>>>>>>..<<<<<.<....<<<<<<...<<<<<<.....<<<.<<<<.<<...<<<<<<<<......>>>>>>>>..<<..)))..>>.....>>......>>>>>>>....>>>>>>..>>.>>>><<...<<<<...<<<<<<<<<...>>>>>>>>>..>>>>...>>...[.(((((...>.>>>>>.<<<<<<<.....>>>>>>>........)))))]..((.<<<<<....>>>>><<<<<<<....<<<<>>>>>>>>>>....>>>>>>>.<<<<<<<<.<<<<<......>>>>>.>>>>>>>>..))... .........((((((((((..{{{.)))))))))).(((((((((((....(.[[[[[[))))))).)))))..(((((.(....((((((....(((((.....(((.((((.(((..(((((((((....)))))))))..((..}}.}.))....)))......)))))))....)))))...)).))))((....(((..((((((((((...))))))))).))))....))...[.[[[[[...).))))).(((((((.....)))))))........]]]]]]..((.(((((....)))))(.(((((....((((]]]]]]))))....))))).).(((((((..((((((....))))))..)))))))..))... Misfolded Tetrahymena ribozyme conformation 2; RNA (388-MER) 7xsm N 388 4.01 RF00028 URS0001A24B65_5911 36067294 0000372 5911 ggagggaaaaguuaucaggcaugcaccugguagcuagucuuuaaaccaauagauugcaucgguuuaaaaggcaagaccgucaaauugcgggaaaggggucaacagccguucaguaccaagucucaggggaaacuuugagauggccuugcaaaggguaugguaauaagcugacggacaugguccuaaccacgcagccaaguccuaagucaacagaucuucuguugauauggaugcaguucacagacuaaaugucggucggggaagauguauucuucucauaagauauagucggaccucuccuuaaugggagcuagcggaugaagugaugcaacacuggagccgcugggaacuaauuuguaugcgaaaguauauugauuaguuuuggagu .........<<<<<<<<<<..(((.>>>>>>>>>>.<<<<<<<<<<<......<<<<<<.>>>>>.>>>>>>..<<<<<.<....<<<<<<...<<<<<<.....<<<.<<<<.<<...<<<<<<<<......>>>>>>>>..<<..)))..>>.....>>......>>>>>>>....>>>>>>..>>.>>>><<...<<<<...<<<<<<<<<...>>>>>>>>>..>>>>...>>.....(((((...>.>>>>>.<<<<<<<.....>>>>>>>........)))))...((.<<<<<....>>>>><<<<<<<....<<<<>>>>>>>>>>....>>>>>>>.<<<<<<<<.<<<<<......>>>>>.>>>>>>>>..))... .........((((((((((..{{{.)))))))))).(((((((((((....(.[[[[[[))))))).)))))..(((((.(....((((((...((((((.....(((.((((.(((..(((((((((....)))))))))..((..}}.}.))....)))......)))))))....))))))..)).)))).(...((((..(.((((((((...))))))))..)))))...)....[.[[[[....).))))).(((((((.....))))))).........]]]]]..((.(((((....)))))(((((((....((((]]]]]]))))....))))))).((((((((..(((((....)))))..))))))))..))... Misfolded Tetrahymena ribozyme conformation 3; RNA (388-MER) 7xsn N 387 3.01 RF00028 URS0001A24B65_5911 36067294 0000372 5911 ggagggaaaaguuaucaggcaugcaccugguagcuagucuuuaaaccaauagauugcaucgguuuaaaaggcaagaccgucaaauugcgggaaaggggucaacagccguucaguaccaagucucaggggaaacuuugagauggccuugcaaaggguaugguaauaagcugacggacaugguccuaaccacgcagccaaguccuaagucaacagaucuucuguugauauggaugcaguucacagacuaaaugucggucggggaagauguauucuucucauaagauauagucggaccucuccuuaaugggagcuagcggaugaagugaugcaacacuggagccgcugggaacuaauuuguaugcgaaaguauauugauuaguuuuggag .........<<<<<<<<<<..(((.>>>>>>>>>>.<<<<<<<<<<<......<<<<<<.>>>>>>.>>>>>..<<<<<.<....<<<<<<...<<<<<<.....<<<.<<<<.<<...<<<<<<<<<....>>>>>>>>>..<<..)))..>>.....>>......>>>>>>>....>>>>>>..>>.>>>><<...<<<<...<<<<<<<<<...>>>>>>>>>..>>>>...>>.....(((((...>.>>>>>.<<<<<<<.....>>>>>>>........)))))...((.<<<<<....>>>>><<<<<<<....<<<<>>>>>>>>>>....>>>>>>>.<<<<<<<<.<<<<<......>>>>>.>>>>>>>>..)).. .........((((((((((..{{{.)))))))))).(((((((((((....(.[[[[[[))))))).)))))..(((((.(....((((((...((((((.....(((.((((.(((..(((((((((....)))))))))..((..}}.}.))....)))......)))))))....))))))..)).))))((...((((...((((((((.....))))))))..))))...))...[.[[[[[...).))))).(((((((.....)))))))........]]]]]]..((.(((((....)))))(((((((....((((]]]]]]))))....))))))).(((((((..((((.(....).))))..)))))))..)).. Native Tetrahymena ribozyme conformation; RNA (387-MER) 7xw2 C 54 3.04 RF00027 URS000268139B_9606 36813958 0035195 0016442 9606 ugagguaguagguuguaucgcuuuagagauagccauacaaucuacugucuuucu .<<<<<<<<<<<<<<<<<.<<<........>>>.>>>>>>>>>>>>>>>>>... .(((..((((((((((...(((.(....).)))...))))))))))..)))... Cryo-EM structure of human DICER-pre-miRNA in a dicing state; RNA (73-MER) 7y7c Z 77 2.51 RF00005 URS00001BBAFC_562 37992713 0030533 0006412 562 cgcggggnggagcagccuggnagcucgucgggnucauaacccgaagaucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Structure of the Bacterial Ribosome with human tRNA Asp(G34) and mRNA(GAU); P-site tRNA-fMet 7y7c V 75 2.51 RF00005 URS0002915684_9606 37992713 0030533 0006412 9606 uccucnuunguauaguggngaguauccccgccugucangcgggagannggggnucgnuuccccgacggggagcca <<<<<<<..<<<<........>>>><<<<<<.......>>>>>.>..<<<<<.......>>>>>>>>>>>>.... (((((((..(((.....[....))).(((((.......)))))....(((((..]....)))))))))))).... Structure of the Bacterial Ribosome with human tRNA Asp(G34) and mRNA(GAU); A-site tRNA-Asp 7y7d Z 77 2.58 RF00005 URS00001BBAFC_562 37992713 0030533 0006412 562 cgcggggnggagcagccuggnagcucgucgggnucauaacccgaagaucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Structure of the Bacterial Ribosome with human tRNA Asp(Q34) and mRNA(GAU); P-site tRNA-fMet 7y7e Z 77 2.41 RF00005 URS00001BBAFC_562 37992713 0030533 0006412 562 cgcggggnggagcagccuggnagcucgucgggnucauaacccgaagaucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Structure of the Bacterial Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU); P-site tRNA-fMet 7y7f Z 77 2.43 RF00005 URS00001BBAFC_562 37992713 0030533 0006412 562 cgcggggnggagcagccuggnagcucgucgggnucauaacccgaagaucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Structure of the Bacterial Ribosome with human tRNA Asp(ManQ34) and mRNA(GAC); P-site tRNA-fMet 7y7g Z 77 2.34 RF00005 URS00001BBAFC_562 37992713 0030533 0006412 562 cgcggggnggagcagccuggnagcucgucgggnucauaacccgaagaucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Structure of the Bacterial Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU); P-site tRNA-fMet 7y7h Z 77 2.51 RF00005 URS00001BBAFC_562 37992713 0030533 0006412 562 cgcggggnggagcagccuggnagcucgucgggnucauaacccgaagaucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Structure of the Bacterial Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAC); P-site tRNA-fMet 7yc8 N 388 4.14 RF00028 URS00026813C7_5890 36660826 0000372 5890 ggagggaaaaguuaucaggcaugcaccugguagcuagucuuuaaaccaauagauugcaucgguuuaaaaggcaagaccgucaaauugcgggaaaggggucaacagccguucaguaccaagucucaggggaaacuuugagauggccuugcaaaggguaugguaauaagcugacggacaugguccuaaccacgcagccaaguccuaagucaacagaucuucuguugauauggaugcaguucacagacuaaaugucggucggggaagauguauucuucucauaagauauagucggaccucuccuuaaugggagcuagcggaugaagugaugcaacacuggagccgcugggaacuaauuuguaugcgaaaguauauugauuaguuuuggagu .........<<<<<<<<<<..[((.>>>>>>>>>>.<<<<<<<<<<<......<<<<<<.>>>>>>.>>>>>..<<<<<.<....<<<<<<...<<<<<<.....<<<.<<<<.<<...<<<<<<<<<....>>>>>>>>>..<<..)).].>>.....>>......>>>>>>>....>>>>>>..>>.>>>><<...<<<<...<<<<<<<<<...>>>>>>>>>..>>>>...>>.....(((((...>.>>>>>.<<<<<<<.....>>>>>>>........)))))...((.<<<<<....>>>>><<<<<<<....<<<<>>>>>>>>>>....>>>>>>>.<<<<<<<<.<<<<<......>>>>>.>>>>>>>>..))... .........((((((((((..{{{.)))))))))).(.(((((((((......[[[[[[.))))).)))).)..(((((.(....((((((...((((((.....(((.((((.(((...(((((.((....)).)))))...((..}}.}.))....)))......)))))))....))))))..)).)))).(...((((..(.((((((((...))))))))..)))))...)....[.[[[[[...).))))).(((((((.....)))))))........]]]]]]..((.((((......))))(((((((....((((]]]]]]))))....))))))).((((((((.((((.(....).)))).))))))))..))... Cryo-EM structure of Tetrahymena ribozyme conformation 1 undergoing the first-step self-splicing; RNA (388-MER) 7ycg N 393 3.18 RF00028 URS00026813C7_5890 36660826 0000372 5890 gguuuggagggaaaaguuaucaggcaugcaccugguagcuagucuuuaaaccaauagauugcaucgguuuaaaaggcaagaccgucaaauugcgggaaaggggucaacagccguucaguaccaagucucaggggaaacuuugagauggccuugcaaaggguaugguaauaagcugacggacaugguccuaaccacgcagccaaguccuaagucaacagaucuucuguugauauggaugcaguucacagacuaaaugucggucggggaagauguauucuucucauaagauauagucggaccucuccuuaaugggagcuagcggaugaagugaugcaacacuggagccgcugggaacuaauuuguaugcgaaaguauauugauuaguuuuggagu ..............<<<<<<<<<<..(((.>>>>>>>>>>.<<<<<<<<<<<......<<<<<<.>>>>>>.>>>>>..<<<<<.<....<<<<<<...<<<<<<.....<<<.<<<<.<<...<<<<<<<<<....>>>>>>>>>..<<..)))..>>.....>>......>>>>>>>....>>>>>>..>>.>>>><<...<<<<...<<<<<<<<<...>>>>>>>>>..>>>>...>>.....(((((...>.>>>>>.<<<<<<<.....>>>>>>>........)))))...(..<<<<<....>>>>><<<<<<<....<<<<>>>>>>>>>>....>>>>>>>.<<<<<<<<.<<<<<......>>>>>.>>>>>>>>..).... ..............((((((((((..{{{.)))))))))).(((((((((((......[[[[[[.)))))).)))))..(((((.(....((((((...((((((.....(((.((((.(((..((((((.((....)).))))))..((..}}.}.))....)))......)))))))....))))))..)).))))((...((((..((((((((((...))))))))).)))))...))...[.[[[[[...).))))).(((((((.....)))))))........]]]]]]..((.(((((....)))))(((((((....((((]]]]]]))))....))))))).((((((((..(((.(....).)))..))))))))..))... Cryo-EM structure of Tetrahymena ribozyme conformation 2 undergoing the first-step self-splicing; RNA (393-MER) 7ych N 393 3.09 RF00028 URS00026813C7_5890 36660826 0000372 5890 gguuuggagggaaaaguuaucaggcaugcaccugguagcuagucuuuaaaccaauagauugcaucgguuuaaaaggcaagaccgucaaauugcgggaaaggggucaacagccguucaguaccaagucucaggggaaacuuugagauggccuugcaaaggguaugguaauaagcugacggacaugguccuaaccacgcagccaaguccuaagucaacagaucuucuguugauauggaugcaguucacagacuaaaugucggucggggaagauguauucuucucauaagauauagucggaccucuccuuaaugggagcuagcggaugaagugaugcaacacuggagccgcugggaacuaauuuguaugcgaaaguauauugauuaguuuuggagu ..............<<<<<<<<<<..(((.>>>>>>>>>>.<<<<<<<<<<<......<<<<<<.>>>>>>.>>>>>..<<<<<.<....<<<<<<...<<<<<<.....<<<.<<<<.<<...<<<<<<<<......>>>>>>>>..<<..)))..>>.....>>......>>>>>>>....>>>>>>..>>.>>>><<...<<<<...<<<<<<<<<...>>>>>>>>>..>>>>...>>.....(((((...>.>>>>>.<<<<<<<.....>>>>>>>........)))))...((.<<<<<....>>>>><<<<<<<....<<<<>>>>>>>>>>....>>>>>>>.<<<<<<<<.<<<<<......>>>>>.>>>>>>>>..))... ..............((((((((((..{{{.)))))))))).(((((((((((......[[[[[[.)))))).)))))..(((((.(....((((((...((((((.....(((.((((.(((..((((((.((....)).))))))..((..}}.}.))....)))......)))))))....))))))..)).)))).(...((((..((((((((((...))))))))).)))))...)....[.[[[[[...).))))).(((((((.....)))))))........]]]]]]..((.(((((....)))))(((((((....((((]]]]]]))))....))))))).((((((((..(((.(....).)))..))))))))..))... Cryo-EM structure of Tetrahymena ribozyme conformation 3 undergoing the first-step self-splicing; RNA (393-MER) 7yci N 389 2.98 RF00028 URS00026813C7_5890 36660826 0000372 5890 uggagggaaaaguuaucaggcaugcaccugguagcuagucuuuaaaccaauagauugcaucgguuuaaaaggcaagaccgucaaauugcgggaaaggggucaacagccguucaguaccaagucucaggggaaacuuugagauggccuugcaaaggguaugguaauaagcugacggacaugguccuaaccacgcagccaaguccuaagucaacagaucuucuguugauauggaugcaguucacagacuaaaugucggucggggaagauguauucuucucauaagauauagucggaccucuccuuaaugggagcuagcggaugaagugaugcaacacuggagccgcugggaacuaauuuguaugcgaaaguauauugauuaguuuuggagu ..........<<<<<<<<<<..(((.>>>>>>>>>>.<<<<<<<<<<<......<<<<<<.>>>>>>.>>>>>..<<<<<.<....<<<<<<...<<<<<<.....<<<.<<<<.<<...<<<<<<<<......>>>>>>>>..<<..)))..>>.....>>......>>>>>>>....>>>>>>..>>.>>>><<...<<<<...<<<<<<<<<...>>>>>>>>>..>>>>...>>.....(((((...>.>>>>>.<<<<<<<.....>>>>>>>........)))))...(..<<<<<....>>>>><<<<<<<....<<<<>>>>>>>>>>....>>>>>>>.<<<<<<<<.<<<<<......>>>>>.>>>>>>>>...)... ..........((((((((((..{{{.)))))))))).(((((((((((......[[[[[[.)))))).)))))..(((((.(....((((((...((((((.....(((.((((.(((..((((((.((....)).))))))..((..}}.}.))....)))......)))))))....))))))..)).)))).(...((((..((((((((((...))))))))).)))))...)....[.[[[[[...).))))).(((((((.....)))))))........]]]]]]..((.(((((....)))))(((((((....((((]]]]]]))))....))))))).(((((((...(((.(....).)))...)))))))..))... Cryo-EM structure of Tetrahymena ribozyme conformation 4 undergoing the first-step self-splicing; RNA (389-MER) 7yg8 N 387 2.97 RF00028 URS00026813C7_5890 36928031 0000372 5890 gagggaaaaguuaucaggcaugcaccugguagcuagucuuuaaaccaauagauugcaucgguuuaaaaggcaagaccgucaaauugcgggaaaggggucaacagccguucaguaccaagucucaggggaaacuuugagauggccuugcaaaggguaugguaauaagcugacggacaugguccuaaccacgcagccaaguccuaagucaacagaucuucuguugauauggaugcaguucacagacuaaaugucggucggggaagauguauucuucucauaagauauagucggaccucuccuuaaugggagcuagcggaugaagugaugcaacacuggagccgcugggaacuaauuuguaugcgaaaguauauugauuaguuuuggagu ........<<<<<<<<<<..(((.>>>>>>>>>>.<<<<<<<<<<<......<<<<<<.>>>>>>.>>>>>..<<<<<.<....<<<<<<...<<<<<<.....<<<.<<<<.<<...<<<<<<<<<....>>>>>>>>>..<<..)))..>>.....>>......>>>>>>>....>>>>>>..>>.>>>><<...<<<<...<<<<<<<<<...>>>>>>>>>..>>>>...>>.....(((((...>.>>>>>.<<<<<<<.....>>>>>>>........)))))...(..<<<<<....>>>>><<<<<<<....<<<<>>>>>>>>>>....>>>>>>>.<<<<<<<<.<<<<<......>>>>>.>>>>>>>>..).... ........((((((((((..{{{.)))))))))).(((((((((((......[[[[[[.)))))).)))))..(((((.(....((((((...((((((.....(((.((((.(((..(((((((((....)))))))))..((..}}.}.))....)))......)))))))....))))))..)).))))((...((((..((((((((((...))))))))).)))))...))...[.[[[[[...).))))).(((((((.....)))))))........]]]]]]..(..((((......))))(((((((....((((]]]]]]))))....))))))).(((((((...(((.(....).)))...)))))))..).... Cryo-EM structure of Tetrahymena ribozyme conformation 5 undergoing the second-step self-splicing; RNA (387-MER) 7yg9 N 391 2.68 RF00028 URS00026813C7_5890 36928031 0000372 5890 uuuggagggaaaaguuaucaggcaugcaccugguagcuagucuuuaaaccaauagauugcaucgguuuaaaaggcaagaccgucaaauugcgggaaaggggucaacagccguucaguaccaagucucaggggaaacuuugagauggccuugcaaaggguaugguaauaagcugacggacaugguccuaaccacgcagccaaguccuaagucaacagaucuucuguugauauggaugcaguucacagacuaaaugucggucggggaagauguauucuucucauaagauauagucggaccucuccuuaaugggagcuagcggaugaagugaugcaacacuggagccgcugggaacuaauuuguaugcgaaaguauauugauuaguuuuggagu ............<<<<<<<<<<..(((.>>>>>>>>>>.<<<<<<<<<<<......<<<<<<.>>>>>.>>>>>>..<<<<<.<....<<<<<<...<<<<<<.....<<<.<<<<.<<...<<<<<<<<<....>>>>>>>>>..<<..)))..>>.....>>......>>>>>>>....>>>>>>..>>.>>>><<...<<<<...<<<<<<<<<...>>>>>>>>>..>>>>...>>.....(((((...>.>>>>>.<<<<<<<.....>>>>>>>........)))))...(..<<<<<....>>>>><<<<<<<....<<<<>>>>>>>>>>....>>>>>>>.<<<<<<<<.<<<<<......>>>>>.>>>>>>>>..).... ............((((((((((..{{{.)))))))))).(((((((((((....(.[[[[[[))))))).)))))..(((((.(....((((((...((((((.....(((.((((.(((..(((((((((....)))))))))..((..}}.}.))....)))......)))))))....))))))..)).))))((...((((..((((((((((...))))))))).)))))...))...[.[[[[[...).))))).(((((((.....)))))))........]]]]]]..(..(((((....)))))(((((((.....(((]]]]]]))).....))))))).((((((((..(((.(....).)))..))))))))..).... Cryo-EM structure of Tetrahymena ribozyme conformation 1 undergoing the second-step self-splicing; RNA (391-MER) 7yga N 393 2.35 RF00028 URS00026813C7_5890 36928031 0000372 5890 gguuuggagggaaaaguuaucaggcaugcaccugguagcuagucuuuaaaccaauagauugcaucgguuuaaaaggcaagaccgucaaauugcgggaaaggggucaacagccguucaguaccaagucucaggggaaacuuugagauggccuugcaaaggguaugguaauaagcugacggacaugguccuaaccacgcagccaaguccuaagucaacagaucuucuguugauauggaugcaguucacagacuaaaugucggucggggaagauguauucuucucauaagauauagucggaccucuccuuaaugggagcuagcggaugaagugaugcaacacuggagccgcugggaacuaauuuguaugcgaaaguauauugauuaguuuuggagu ..............<<<<<<<<<<..(((.>>>>>>>>>>.<<<<<<<<<<<......<<<<<<.>>>>>.>>>>>>..<<<<<.<....<<<<<<...<<<<<<.....<<<.<<<<.<<...<<<<<<<<<....>>>>>>>>>..<<..)))..>>.....>>......>>>>>>>....>>>>>>..>>.>>>><<...<<<<...<<<<<<<<<...>>>>>>>>>..>>>>...>>.....(((((...>.>>>>>.<<<<<<<.....>>>>>>>........)))))...(..<<<<<....>>>>><<<<<<<....<<<<>>>>>>>>>>....>>>>>>>.<<<<<<<<.<<<<<......>>>>>.>>>>>>>>..).... ..............((((((((((..{{{.)))))))))).(((((((((((....(.[[[[[[))))))).)))))..(((((.(....((((((...((((((.....(((.((((.(((..(((((((((....)))))))))..((..}}.}.))....)))......)))))))....))))))..)).))))((...((((..((((((((((...))))))))).)))))...))...[.[[[[[...).))))).(((((((.....)))))))........]]]]]]..(..(((((....)))))(((((((....((((]]]]]]))))....))))))).(((((((..((((.(....).))))..)))))))..).... Cryo-EM structure of Tetrahymena ribozyme conformation 2 undergoing the second-step self-splicing; RNA (393-MER) 7ygb N 393 2.62 RF00028 URS00026813C7_5890 36928031 0000372 5890 gguuuggagggaaaaguuaucaggcaugcaccugguagcuagucuuuaaaccaauagauugcaucgguuuaaaaggcaagaccgucaaauugcgggaaaggggucaacagccguucaguaccaagucucaggggaaacuuugagauggccuugcaaaggguaugguaauaagcugacggacaugguccuaaccacgcagccaaguccuaagucaacagaucuucuguugauauggaugcaguucacagacuaaaugucggucggggaagauguauucuucucauaagauauagucggaccucuccuuaaugggagcuagcggaugaagugaugcaacacuggagccgcugggaacuaauuuguaugcgaaaguauauugauuaguuuuggagu ..............<<<<<<<<<<..(((.>>>>>>>>>>.<<<<<<<<<<<......<<<<<<.>>>>>>.>>>>>..<<<<<.<....<<<<<<...<<<<<<.....<<<.<<<<.<<...<<<<<<<<<....>>>>>>>>>..<<..)))..>>.....>>......>>>>>>>....>>>>>>..>>.>>>><<...<<<<...<<<<<<<<<...>>>>>>>>>..>>>>...>>.....(((((...>.>>>>>.<<<<<<<.....>>>>>>>........)))))...(..<<<<<....>>>>><<<<<<<.(..<<<<>>>>>>>>>>...)>>>>>>>.<<<<<<<<.<<<<<......>>>>>.>>>>>>>>..).... ..............((((((((((..{{{.)))))))))).(((((((((((......[[[[[[.)))))).)))))..(((((.(....((((((...((((((.....(((.((((.(((..(((((((((....)))))))))..((..}}.}.))....)))......)))))))....))))))..)).))))((...((((..((((((((((...))))))))).)))))...))...[.[[[[[...).))))).(((((((.....)))))))........]]]]]]..(..(((((....)))))(((((((....((((]]]]]]))))....))))))).(((((((..((((((....))))))..)))))))..).... Cryo-EM structure of Tetrahymena ribozyme conformation 3 undergoing the second-step self-splicing; RNA (393-MER) 7ygc N 393 2.65 RF00028 URS00026813C7_5911 36928031 0000372 5911 gguuuggagggaaaaguuaucaggcaugcaccugguagcuagucuuuaaaccaauagauugcaucgguuuaaaaggcaagaccgucaaauugcgggaaaggggucaacagccguucaguaccaagucucaggggaaacuuugagauggccuugcaaaggguaugguaauaagcugacggacaugguccuaaccacgcagccaaguccuaagucaacagaucuucuguugauauggaugcaguucacagacuaaaugucggucggggaagauguauucuucucauaagauauagucggaccucuccuuaaugggagcuagcggaugaagugaugcaacacuggagccgcugggaacuaauuuguaugcgaaaguauauugauuaguuuuggagu ..............<<<<<<<<<<..(((.>>>>>>>>>>.<<<<<<<<<<<......<<<<<<.>>>>>>.>>>>>..<<<<<.<....<<<<<<...<<<<<<.....<<<.<<<<.<<...<<<<<<<<<....>>>>>>>>>..<<..)))..>>.....>>......>>>>>>>....>>>>>>..>>.>>>><<...<<<<...<<<<<<<<<...>>>>>>>>>..>>>>...>>.....(((((...>.>>>>>.<<<<<<<.....>>>>>>>........)))))...(..<<<<<....>>>>><<<<<<<....<<<<>>>>>>>>>>....>>>>>>>.<<<<<<<<.<<<<<......>>>>>.>>>>>>>>..).... ..............((((((((((..{{{.)))))))))).(((((((((((......[[[[[[.)))))).)))))..(((((.(....((((((...((((((.....(((.((((.(((..(((((((((....)))))))))..((..}}.}.))....)))......)))))))....))))))..)).))))((...((((..((((((((((...))))))))).)))))...))...[.[[[[[...).))))).(((((((.....)))))))........]]]]]]..(..(((((....)))))(((((((....((((]]]]]]))))....))))))).((((((((.((((((....)))))).))))))))..).... Cryo-EM structure of Tetrahymena ribozyme conformation 4 undergoing the second-step self-splicing; RNA (393-MER) 7ygd N 384 3.41 RF00028 URS00026813C7_5890 36928031 0000372 5890 ggaaaaguuaucaggcaugcaccugguagcuagucuuuaaaccaauagauugcaucgguuuaaaaggcaagaccgucaaauugcgggaaaggggucaacagccguucaguaccaagucucaggggaaacuuugagauggccuugcaaaggguaugguaauaagcugacggacaugguccuaaccacgcagccaaguccuaagucaacagaucuucuguugauauggaugcaguucacagacuaaaugucggucggggaagauguauucuucucauaagauauagucggaccucuccuuaaugggagcuagcggaugaagugaugcaacacuggagccgcugggaacuaauuuguaugcgaaaguauauugauuaguuuuggagu .....<<<<<<<<<<..(((.>>>>>>>>>>.<<<<<<<<<<<......<<<<<<.>>>>>>.>>>>>..<<<<<.<....<<<<<<...<<<<<<.....<<<.<<<<.<<...<<<<<<<<<....>>>>>>>>>..<<..)))..>>.....>>......>>>>>>>....>>>>>>..>>.>>>><<...<<<<...<<<<<<<<<...>>>>>>>>>..>>>>...>>.....(((((...>.>>>>>.<<<<<<<.....>>>>>>>........)))))...(..<<<<<....>>>>><<<<<<<....<<<<>>>>>>>>>>....>>>>>>>.<<<<<<<<.<<<<<......>>>>>.>>>>>>>>..).... .....((((((((((..{{{.)))))))))).(((((((((((......[[[[[..)))))).)))))..(((((.(....((((((...((((((.....(((.((((.(((...((((((((....))))))))...((..}}.}.))....)))......)))))))....))))))..)).))))((...((((..((((((((((...))))))))).)))))...))...[.[[[[[...).))))).(.(((((.....))))).)........]]]]]]..(..(((((....)))))(((((((....((((.]]]]]))))....))))))).((((((((..(((.(....).)))..))))))))..).... Cryo-EM structure of Tetrahymena ribozyme conformation 6 undergoing the second-step self-splicing; RNA (384-MER) 7yr6 A 118 4.8 RF00166 URS0002681400_287 36828938 0006109,0006401 287 gcguacagggaacacgcaaccccgaaggaucggggaagggacgucgccagggaggcgauuccaucaggaugaugacgagggacugaagagugggcgggguaauaccccgccccuuuuu <<<<.........>>>>..<<<<<<....>>>>>>........<<<<<.....>>>>>....<<<.....>>>..<<......>><<<<<.<<<<<<<<<...>>>>>>>>>>>>>>. ((((.........))))..(((((......))))).........((((.....)))).....(((.....)))..(........)(((((.((((((((.....))))))))))))). Cryo-EM structure of Pseudomonas aeruginosa RsmZ RNA in complex with two RsmA protein dimers; RsmZ RNA 7yr7 A 118 3.8 RF00166 URS0002681400_287 36828938 0006109,0006401 287 gcguacagggaacacgcaaccccgaaggaucggggaagggacgucgccagggaggcgauuccaucaggaugaugacgagggacugaagagugggcgggguaauaccccgccccuuuuu <<<<.........>>>>..<<<<<......>>>>>.......<<<<<.......>>>>>...<<<.....>>>............<<<<<.<<<<<<<<.....>>>>>>>>>>>>>. ((((.........))))..(((((......)))))........(((.(......))))....((.......))............(((((.((((((((.....))))))))))))). Cryo-EM structure of Pseudomonas aeruginosa RsmZ RNA in complex with three RsmA protein dimers; RsmZ RNA (118-MER) 7yse E 76 2.907 RF00005 URS00001ACE3E_562 36753552 0030533 0006412 562 gcgggaauagcucaguugguagagcacgaccuugccaaggucggggucgcgaguucgagucucguuucccgcucca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).((((((.....)))))).....(((((..]....)))))))))))).... Crystal structure of E. coli heterotetrameric GlyRS in complex with tRNA; RNA (76-MER) 7yse F 64 2.907 RF00005 URS00001ACE3E_562 36753552 0030533 0006412 562 gcgggaauagcucaggguagagcacgcaaggucggggcgaguucgagucucguuucccgcucca <<<<<<<..<<<<......>>>>.<........>..<<<<<.......>>>>>>>>>>>>.... (((((((..((((...[..)))).............((.((..]....)).))))))))).... Crystal structure of E. coli heterotetrameric GlyRS in complex with tRNA; RNA (76-MER) 7yym B 55 4.19 RF00455 URS000230F82A_32630 36332606 0035195 0016442 32630 uagcagcacauaaugguuuguggauguugggugcaggccauacugugcugccuca ..<<<<<<<<..<<<<<<<<<<.........>>>>>>>>>>..>>>>>>>>.... ..((((((((..((((((((((.........))))))))))..)))))))).... Mammalian Dicer in the ""pre-dicing state"" with pre-miR-15a substrate; 59-nt precursor of miR-15a 7yyn B 55 6.21 RF00455 URS000230F82A_10090 36332606 0035195 0016442 10090 uagcagcacauaaugguuuguggauguugggugcaggccauacugugcugccuca ..<<<<<<<<..<<<<<<<<<<.........>>>>>>>>>>..>>>>>>>>.... ..((((((((..((((((((((.........))))))))))..)))))))).... Mammalian Dicer in the dicing state with pre-miR-15a substrate; 59-nt precursor of miR-15a 7z20 v 77 2.29 RF00005 URS00001DEEBE_562 35869078 0030533 0006412 562 cggugauuggcgcagccugguagcgcacuucguucgggacgaaggggucggagguucgaauccucuaucaccgacca <<<<<<<..<<<<.........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (.(((((...(((......[..)))..((((.........)))).....(((((..]....)))))))))).).... 70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia and a stalled filamin domain 5 nascent chain; Pro-tRNA 7zag 4 77 2.77 RF00005 URS0000B21E07_272844 35694843 0030533 0006412 272844 agcggggnggagcagccuggnagcucgucgggnucauaacccgaagaucgucggnucaaauccggcccccgcuacca <<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.........)))).(((((.......))))).......(((.......)))..))))))).... Cryo-EM structure of a Pyrococcus abyssi 30S bound to Met-initiator tRNA,mRNA, aIF1A and the C-terminal domain of aIF5B.; Met-tRNAiMET 7zah 4 77 2.7 RF00005 URS0000B21E07_272844 35694843 0030533 0006412 272844 agcggggnggagcagccuggnagcucgucgggnucauaacccgaagaucgucggnucaaauccggcccccgcuacca <<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))).... Cryo-EM structure of a Pyrococcus abyssi 30S bound to Met-initiator tRNA, mRNA, aIF1A and aIF5B; tRNA-MET 7zai 4 77 2.6 RF00005 URS0000B21E07_272844 35694843 0030533 0006412 272844 agcggggnggagcagccuggnagcucgucgggnucauaacccgaagaucgucggnucaaauccggcccccgcuacca <<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>......<<<<.......>>>>.>>>>>>>.... (((((((..((((......[..)))).(((((.......))))).......(((..]....)))..))))))).... Cryo-EM structure of a Pyrococcus abyssi 30S bound to Met-initiator tRNA, mRNA and aIF1A.; tRNA-MET 7zhg 4 19 2.25 RF00005 URS0000B21E07_272844 35694843 0030533 0006412 272844 gucgggnucauaacccgaa .<<<<<.......>>>>>. .(((((.......))))). High-resolution cryo-EM structure of Pyrococcus abyssi 30S ribosomal subunit bound to mRNA and initiator tRNA anticodon stem-loop; Met-tRNAiMet 7zjw F 90 2.8 RF01852 URS000014E598_9606 35709277 0030533 0006412 9606 gcccggaugauccucaguggucuggggugcaggcuucaaaccuguagcugucuagcgacagagugguucaauuccaccuuucgggcgcca <<<<<<<.....<<<<......>>>>..<<<<<.......>>>>>..<<<<<....>>>>>.<<<<.......>>>>..>>>>>>>.... (.(((((.(...(.((...[..))..).(((((.......)))))..(((((....))))).((((..]....))))).))))).).... Rabbit 80S ribosome as it decodes the Sec-UGA codon; human Ser-tRNA-Sec 7zjw S 46 2.8 RF00031 URS0002616B65_10116 35709277 0001514 10116 caugacggucugccugaaaaccagcccgcugguggggcagucccga ......<<.<<........<<<<<....>>>>>.....>>.>>... ......((.(..........(((......))).......).))... Rabbit 80S ribosome as it decodes the Sec-UGA codon; GPX4 SECIS element 7zjx S 46 3.1 RF00031 URS0002616B65_10116 35709277 0001514 10116 caugacggucugccugaaaaccagcccgcugguggggcagucccga ......<..<<<<......<<.<......>.>>...>>>>..>... ..........(..........(.........).......)...... Rabbit 80S ribosome programmed with SECIS and SBP2; GPX4 SECIS element 7zki 4 77 3.6 RF00005 URS0000B21E07_562 35694843 0030533 0006412 562 agcggggnggagcagccuggnagcucgucgggnucauaacccgaagaucgucggnucaaauccggcccccgcuacca <<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))).... Cryo-EM structure of aIF1A:aIF5B:Met-tRNAiMet complex from a Pyrococcus abyssi 30S initiation complex; Met-tRNAiMet 7zod v 77 2.56 RF00005 URS00001DEEBE_562 35869078 0030533 0006412 562 cggugauuggcgcagccugguagcgcacuucguucgggacgaaggggucggagguucgaauccucuaucaccgacca ..<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>...... ..(((((...(((......[..)))..((((.........)))).....(((((..]....))))))))))...... 70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia; Pro-tRNA 7zp8 v 76 2.2 RF00005 URS00001DEEBE_562 35869078 0030533 0006412 562 ggugauuggcgcagccugguagcgcacuucguucgggacgaaggggucggagguucgaauccucuaucaccgacca ..........<.............>.<<<<<.......>>>>>.....<<<<<.......>>>>>........... .(....(...........[.......((((.........)))).....(((((..]....))))))....)..... 70S E. coli ribosome with a stalled filamin domain 5 nascent chain; Pro-tRNA 7zpi B 55 5.91 RF00455 URS000230F82A_10090 36332606 0035195 0016442 10090 uagcagcacauaaugguuuguggauguugggugcaggccauacugugcugccuca ..<<<<<<<<..<<<<<<<<<<.........>>>>>>>>>>..>>>>>>>>.... ..((((((((..((((((((((.........))))))))))..)))))))).... Mammalian Dicer in the ""dicing state"" with pre-miR-15a substrate; 59-nt precursor of miR-15a 7zpj B 55 3.81 RF00455 URS000230F82A_10090 36332606 0035195 0016442 10090 uagcagcacauaaugguuuguggauguugggugcaggccauacugugcugccuca ..<<<<<<<<..<<<<<<<<<<.........>>>>>>>>>>..>>>>>>>>.... ..((((((((..((((((((((.........))))))))))..)))))))).... Mammalian Dicer in the ""pre-dicing state"" with pre-miR-15a substrate and TARBP2 subunit; 59-nt precursor of miR-15a 7zpk B 55 3.81 RF00455 URS000230F82A_10090 36332606 0035195 0016442 10090 uagcagcacauaaugguuuguggauguugggugcaggccauacugugcugccuca ..<<<<<<<<..<<<<<<<<<<.........>>>>>>>>>>..>>>>>>>>.... ..((((((((..((((((((((.........))))))))))..)))))))).... Mammalian Dicer in the ""pre-dicing state"" with pre-miR-15a substrate and TARBP2 subunit; 59-nt precursor of miR-15a 7zpq 6 76 3.47 RF00005 URS00023119BF_4932 36801861 0030533 0006412 4932 uuccucguggcccaauggucacggcgucuggcuucgaaccagaagauuccagguucaaguccuggcggggaagcca <<<<<<<..<<<..........>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... ((((.((..(((.....[....))).(((((.......))))).....(((((..]....))))))).)))).... Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1); tRNA 7zq6 M 76 2.75 RF00005 URS00001ACE3E_562 35869078 0030533 0006412 562 gcgggaauagcucaguugguagagcacgaccuugccaaggucggggucgcgaguucgagucucguuucccgcucca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).(((((.......))))).....(((((..]....)))))))))))).... 70S E. coli ribosome with truncated uL23 and uL24 loops and a stalled filamin domain 5 nascent chain; Gly-tRNA 7zrs 6 75 4.8 RF00005 URS0000E60BA3_4932 36801861 0030533 0006412 4932 uccgauauagcguaacggcuaucacaucacgcuuucaccguggagaccgggguucgacuccccguaucggagcca <<<<<<<..<.<..........>.>.<<<<<.......>>>>>....<<<<<.......>>>>>>>>>>>>.... (((((((..(.(.....[....).).(((((.......)))))....(((((..]....)))))))))))).... Structure of the RQT-bound 80S ribosome from S. cerevisiae (C2) - composite map; tRNA 7zrz ZN1 77 3.09 RF00005 URS0002681405_9606 37231152 0030533 0006412 9606 ggcucuguggcgcaauggauagcgcauuggacuucuagagaaauucaaagguuguggguucgagucccaccagaguc <<<<<<<..<<<<........>>>>.<<<<.<<<...>>>....>>>>.....<<<<<.......>>>>>>>>>>>> (((((((..((((........)))).((((((((...)))...))))).....(((((.......)))))))))))) Structure of the human tRNA splicing endonuclease defines substrate recognition; pre-tRNA Arg TCT 3-2 7zs5 2 76 3.2 RF00005 URS00023119BF_4932 36801861 0030533 0006412 4932 uuccucguggcccaauggucacggcgucuggcuucgaaccagaagauuccagguucaaguccuggcggggaagcca <<<<<<<..<<<..........>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..(((.....[....))).(((((.......))))).....(((((..]....)))))))))))).... Structure of 60S ribosomal subunit from S. cerevisiae with eIF6 and tRNA; tRNA 7zta ATR1 68 2.7 URS000003E908_83333 37322159 0030533 0006412 83333 ggcgcgunaacaaagcggauguagcggauugcanauccgucuaguccggnugacuccggaacgcgccu <<<<<<<..<<<.......>>>.<<<<<<.....>>>>>>....<<<<<......>>>>>>>>>>>>. (((((((..(((.......))).((((.........))))....(((((......)))))))))))). Structure of an Escherichia coli 70S ribosome stalled by Tetracenomycin X during translation of an MAAAPQK(C) peptide; tRNA-Cys 7zta PTR1 73 2.7 RF00005 URS000042DDAB_83333 37322159 0030533 0006412 83333 gggucguuagcucagggnagagcaguugacunuunaucaauugncgcaggnucgaauccugcacgacccacca <<<<<<<..<<<<......>>>>.<<<<<.......>>>>>....<<<<<.......>>>>>>>>>>>>.... (((((((..((((...[..))))(((((.........)))))...(((((..]....)))))))))))).... Structure of an Escherichia coli 70S ribosome stalled by Tetracenomycin X during translation of an MAAAPQK(C) peptide; tRNA-Lys 7zta ETR1 68 2.7 RF00005 URS00004FF598_83333 37322159 0030533 0006412 83333 ugggguancgccaagngaaggcaccgganucugnuuccggcauccgaggnucgaauccucguacccag <.<<<<<..<<<.......>>>.<<<<<.......>>>>>....<<<<<.......>>>>>>>>>>>. (.(((((..(((....[..))).((((.........))))....(((((..]....))))))))))). Structure of an Escherichia coli 70S ribosome stalled by Tetracenomycin X during translation of an MAAAPQK(C) peptide; tRNA-Gln 7zuw 6 76 4.3 RF00005 URS00023119BF_4932 36801861 0030533 0006412 4932 uuccucguggcccaauggucacggcgucuggcuucgaaccagaagauuccagguucaaguccuggcggggaagcca <<<<<<<..<<<..........>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... ((((.((..(((.....[....))).(((((.......))))).....(((((..]....))))))).)))).... Structure of RQT (C1) bound to the stalled ribosome in a disome unit from S. cerevisiae; tRNA 7zux 6 76 2.5 RF00005 URS00008FED3A_4932 36801861 0030533 0006412 4932 gcccggauagcucagucgguagagcaggggauuaggaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... ..(((.(..((((........)))).(((((.......))))).....((.(.........).))).)))...... Collided ribosome in a disome unit from S. cerevisiae; A/P tRNA 7zux 7 77 2.5 RF00005 URS000041AF00_4932 36801861 0030533 0006412 4932 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(.(((..]....))).)))))))..... Collided ribosome in a disome unit from S. cerevisiae; P/E tRNA 7zw0 sl 76 2.4 RF00005 URS0000EEAD03_580240 36113412 0030533 0006412 580240 gggcguguggcguagucgguagcgcgcucccuuagcaugggagaggucuccgguucgauuccggacucguccgcca <<<<<.<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>.>>>>>.... ((.((.(..((((....[...)))).(((((.......))))).....(((((..]....)))))).)).)).... FAP-80S Complex - Rotated state; tRNA 7zw0 sn 76 2.4 RF00005 URS0000EEAD03_580240 36113412 0030533 0006412 580240 gggcguguggcguagucgguagcgcgcucccuuagcaugggagaggucuccgguucgauuccggacucguccgcca <<<<<.<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>.>>>>>.... ((.((.(..((((....[...)))).(((((.......))))).....(((((..]....)))))).)).)).... FAP-80S Complex - Rotated state; tRNA 8a3l V 77 3.42 RF00005 URS00001BBAFC_83333 36840711 0030533 0006412 83333 cgcggggnggagcagccuggnagcucgucgggcucauaacccgaagaucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Structural insights into the binding of bS1 to the ribosome; P-site fMet-tRNA(fMet) 8a3l W 77 3.42 RF00005 URS000041AF00_83333 36840711 0030533 0006412 83333 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Structural insights into the binding of bS1 to the ribosome; E-site tRNA 8agt x 75 2.6 RF00005 URS00026813B4_4932 36804914 0030533 0006412 4932 gggcguguggcguagucgagcgcgcucccuuagcaugggagaggucuccgguucgauuccggacucguccgccaA <<<<<....<<<<......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>..>>>>>..... ((.((.(..(((.....[..))).(((((.......))))).....(((((..]....)))))).)).)).... Yeast RQC complex in state F; A-site Ala aminoacyl-tRNA 8agt y 73 2.6 RF00005 URS0000EEAD03_4932 36804914 0030533 0006412 4932 gggcguguggcguagucagcgcgcucccuuagcaugggagaggucuccgguucgauuccggacucguccgcca <<<<<....<<<<.....>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>..>>>>>.... (((((.(..((((.....)))).(((((.......))))).....(((((.......)))))).))))).... Yeast RQC complex in state F; P-site petidyl-tRNA 8agu y 73 2.7 RF00005 URS0000EEAD03_4932 36804914 0030533 0006412 4932 gggcguguggcguagucagcgcgcucccuuagcaugggagaggucuccgguucgauuccggacucguccgcca <<<<<....<<<<.....>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>..>>>>>.... (((((.(..((((.....)))).(((((.......))))).....(((((.......)))))).))))).... Yeast RQC complex in state E; P-site tRNA 8agv x 74 2.6 RF00005 URS0000EEAD03_4932 36804914 0030533 0006412 4932 gggcguguggcguagucgagcgcgcucccuuagcaugggagaggucuccgguucgauuccggacucguccgcca <<<<<....<<<<......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>..>>>>>.... (((((.(..((((....[.)))).(((((.......))))).....(((((..]....)))))).))))).... Yeast RQC complex in state H; Ala tRNA 8agv y 73 2.6 RF00005 URS0000EEAD03_4932 36804914 0030533 0006412 4932 gggcguguggcguagucagcgcgcucccuuagcaugggagaggucuccgguucgauuccggacucguccgcca <<<<<....<<<<.....>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>..>>>>>.... (((((.(..((((.....)))).(((((.......))))).....(((((.......)))))).))))).... Yeast RQC complex in state H; Ala tRNA 8agw x 74 2.6 RF00005 URS0000EEAD03_4932 36804914 0030533 0006412 4932 gggcguguggcguagucgagcgcgcucccuuagcaugggagaggucuccgguucgauuccggacucguccgcca <<<<<....<<<<......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>..>>>>>.... (((((.(..((((....[.))))..((((.......))))......(((((..]....)))))).))))).... Yeast RQC complex in state D; Ala tRNA 8agw y 73 2.6 RF00005 URS0000EEAD03_4932 36804914 0030533 0006412 4932 gggcguguggcguagucagcgcgcucccuuagcaugggagaggucuccgguucgauuccggacucguccgcca <<<<<....<<<<.....>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>..>>>>>.... (((((.(..((((.....)))).(((((.......))))).....(((((.......)))))).))))).... Yeast RQC complex in state D; Ala tRNA 8akn X 76 2.3 RF00005 URS00005AA258_679895 36997646 0030533 0006412 679895 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>><<<<<<<.....>>>>>>.>...<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).(((((.......))))).....(((((..]....)))))))))))).... Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the terminating ribosome; Phenylalanine-tRNA 8akn Z 76 2.3 RF00005 URS0002681392_679895 36997646 0030533 0006412 679895 ggccccuuagcucagugguuagagcaggcgacuuauaaucgcuuggucgcugguucaaguccagcaggggccacca <<<<<<<...<<<........>>>..<<<<<.......>>>>>.....<<<<.........>>>>>>>>>>>.... (((((((..((............)).(((((.......))))).....((((.........))))))))))).... Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the terminating ribosome; Isoleucine-tRNA 8am9 Y 76 2.8 RF00005 URS00002905B5_679895 36997646 0030533 0006412 679895 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the elongating ribosome; Initiator tRNA 8am9 8 75 2.8 RF00005 URS0000181AEC_679895 36997646 0030533 0006412 679895 gccgaaguggcgaaaucgguagacgcaguugauucaaaaucaaccgugccgguucgaguccggccuucggcacca <<<<<<<..<<<...........>>>.<<<<<<.....>>>>>>...<<<<<.......>>>>>>>>>>>>.... (((((((..(((......[....))).(((((.......)))))...(((((..]....)))))))))))).... Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the elongating ribosome; Leucine tRNA 8any Ax 70 2.85 RF00005 URS0002681461_9606 39134711 0030533 0006412 9606 uagggaauaguuuaaaaaacaucugacuuacauucagaagauggagguucaauuccuccuucccuaacca <<<<<<<..<<<<...>>>>.<<<<<.......>>>>>....<<<<<.......>>>>>>>>>>>>.... (((((((..((((...)))).(((((.......)))))....(((((.......)))))))))))).... Human mitochondrial ribosome in complex with LRPPRC, SLIRP, A-site, P-site, E-site tRNAs and mRNA; P/P-tRNA 8any Ay 70 2.85 RF00005 URS00021ED990_9606 39134711 0030533 0006412 9606 uagggaauaguuuaaaaaacagcugacuuucaaucagcagauggagguucaauuccuccuucccuaacca <<<<<<<..<<<<...>>>>.<<<<<.......>>>>>....<<<<<.......>>>>>>>>>>>>.... (((((((..((((...)))).(.(((.......))).)....(((((.......)))))))))))).... Human mitochondrial ribosome in complex with LRPPRC, SLIRP, A-site, P-site, E-site tRNAs and mRNA; E/E-tRNA 8ap4 Z 71 3.0 RF00005 URS00002905B5_83333 36370110 0030533 0006412 83333 gcgggguggagcagccgguagcucgucgggcaacccgaaggucgucgguucaaauccggcccccgcaacca <<<<<<..<<<<........>>>>.<<<<<...>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((.....[..)))).(((((...))))).....(.(((..]....))).)))))))..... Structure of Escherischia coli heat shock protein Hsp15 in complex with ribosomal 50S subunits bearing peptidyl-tRNA; P-tRNA 8apn C1 73 3.1 RF00005 URS0000334CEC_353565 36253367 0030533 0006412 353565 aaauacauagcuuagcggcuaaagcacugguuucauaagccagcuaucaacaguucgagucuguuuguauuua <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>. (((((((..(((.....[....))).(((((.......))))).....(((((..]....)))))))))))). Structure of the mitochondrial ribosome from Polytomella magna with tRNA bound to the P site; P-site tRNA 8asw X 73 3.96 RF00005 URS0000118FF0_4932 36617428 0030533 0006412 4932 gggcacauggcgcaguugguagcgcgcuucccuugcaaggaagaggucaucgguucgauuccgguugcgucca <<<<.<<..<<<<........>>>>.<<<<<.......>>>>>......<<<<.......>>>>.>>.>>>>. ((...((..((((........)))).((((.........)))).......(((.......)))..))...)). Cryo-EM structure of yeast Elp123 in complex with alanine tRNA; Alanine tRNA 8aw3 1 73 3.6 RF00005 URS0002617770_5691 36347890 0030533 0006412 5691 ggccgcuuagcacaguggcagugcaccacucucguaaagugggggucgcgaguucgauucucgcaguggccuc <<<<<<<..<<<<.......>>>>.<<<<<.......>>>.>>....<<<<<.......>>>>>>>>>>>>.. ((((.((..((((....[..))))..((((.......)))).......((((..]....)))).)).)))).. Cryo-EM structure of the Tb ADAT2/3 deaminase in complex with tRNA; RNA (75-MER) 8aye Z 76 1.96 RF00005 URS00002905B5_562 36806263 0030533 0006412 562 gcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... E. coli 70S ribosome bound to thermorubin and fMet-tRNA; P-site tRNA-fMet 8b0x Z 75 1.55 RF00005 URS0002617796_37762 36841832 0030533 0006412 37762 gcgggguggagcagccugguagcucgucgggcuuacaacccgaaggcgucgguucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......)))))....(((((..]....)))))))))))..... Translating 70S ribosome in the unrotated state (P and E, tRNAs); P-site tRNA 8b2l i2 76 2.2 RF00005 URS00001504D0_4097 37156858 0030533 0006412 4097 gcggggauagcucaguugggagagcgucagacugaagaucugaaggucgcguguucgauccacgcucaccgcacca <<<<.<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>.>>>>.... ((((.((..((((.....[..)))).(((((.......))))).....(((((..]....))))))).)))).... Cryo-EM structure of the plant 80S ribosome; tRNA 8b2l W2 76 2.2 RF00005 URS00001504D0_4097 37156858 0030533 0006412 4097 gcggggauagcucaguugggagagcgucagacugaagaucugaaggucgcguguucgauccacgcucaccgcacca <<<<.<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>.>>>>.... ((((.((..((((.....[..)))).(((((.......))))).....(((((..]....))))))).)))).... Cryo-EM structure of the plant 80S ribosome; tRNA 8b7y n 76 3.0 RF00005 URS00002905B5_83333 36603206 0030533 0006412 83333 gcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Cryo-EM structure of the E.coli 70S ribosome in complex with the antibiotic Myxovalargin B.; P-tRNA fMet 8bf7 4 77 2.33 RF00005 URS000041AF00_83333 37553384 0030533 0006412 83333 cgcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))..... Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site; Deacylated P-site tRNA(fMet) 8bf7 5 76 2.33 RF00005 URS000042DDAB_83333 37553384 0030533 0006412 83333 gggucguuagcucagnnggnagagcaguugacunuunaucaauuggucgcaggnucgaauccugcacgacccacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).(((((.......))))).....(((((..]....)))))))))))).... Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site; Dipeptidyl A-site tRNA(Lys) 8bge 4 77 2.11 RF00005 URS000041AF00_83333 37553384 0030533 0006412 83333 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAm6A mRNA codon in the A-site after uncompleted di-peptide formation; Acylated P-site tRNA(fMet) 8bgh 4 77 2.88 RF00005 URS000041AF00_83333 37553384 0030533 0006412 83333 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAA mRNA codon in the A-site after uncompleted di-peptide formation; Acylated P-site tRNA(fMet) 8bh4 4 77 2.62 RF00005 URS000041AF00_83333 37553384 0030533 0006412 83333 cgcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..(((...........))).(((((.......))))).....(((((.......)))))))))))..... Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAm6A mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site; Deacylated P-site tRNA(fMet) 8bh4 5 76 2.62 RF00005 URS000042DDAB_83333 37553384 0030533 0006412 83333 gggucguuagcucagnnggnagagcaguugacunuunaucaauuggucgcaggnucgaauccugcacgacccacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..))))((((((.......))))))....(((((..]....)))))))))))).... Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAm6A mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site; Dipeptidyl A-site tRNA(Lys) 8bhf 21 76 3.1 URS0002681486_9986 37653241 0030533 0006412 9986 accaggauggccuagugguuaaggcguuggacuuaagauccaauggacauguguccgcgucgguuuucgaacccca ....<<<..<<<<........>>>><<<<<<.......>>>>>>....<..<<.......>>..>>>>........ ....(.(..((((........)))).(((((.......))))).....(..((.......))..)).)........ Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4; P-site tRNA 8bhj 4 77 2.81 RF00005 URS000041AF00_83333 37553384 0030533 0006412 83333 cgcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..(((...........))).(((((.......))))).....(((((.......)))))))))))..... Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and Am6AA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site; Deacylated P-site tRNA(fMet) 8bhj 5 76 2.81 RF00005 URS000042DDAB_83333 37553384 0030533 0006412 83333 gggucguuagcucagnnggnagagcaguugacunuunaucaauuggucgcaggnucgaauccugcacgacccacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((.(.....[..).))((((((.......))))))....(((((..]....)))))))))))).... Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and Am6AA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site; Dipeptidyl A-site tRNA(Lys) 8bhl 4 77 2.21 RF00005 URS000041AF00_83333 37553384 0030533 0006412 83333 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and Am6AA mRNA codon in the A-site after uncompleted di-peptide formation; Acylated P-site tRNA(fMet) 8bhn 4 77 2.85 RF00005 URS000041AF00_83333 37553384 0030533 0006412 83333 cgcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca .<<<<<...<<<<.........>>>>.<<<<<.......>>>>.>....<<<<<.......>>>>>.>>>>>..... .((((((..((((.........)))).(((((.......))))).....(.(((.......))).)))))))..... Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and m6AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site; Deacylated P-site tRNA(fMet) 8bhn 5 76 2.85 RF00005 URS000042DDAB_83333 37553384 0030533 0006412 83333 gggucguuagcucagnnggnagagcaguugacunuunaucaauuggucgcaggnucgaauccugcacgacccacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>.>....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..))))..((((.......))))......(((((..]....)))))))))))).... Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and m6AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site; Dipeptidyl A-site tRNA(Lys) 8bhp 4 77 2.37 RF00005 URS000041AF00_83333 37553384 0030533 0006412 83333 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and m6AAA mRNA codon in the A-site after uncompleted di-peptide formation; Deacylated P-site tRNA(fMet) 8bil 4 77 2.04 RF00005 URS000041AF00_83333 37553384 0030533 0006412 83333 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Initiation complex of the E. coli 70S ribosome with mRNA containing AAA codon in the A-site.; Acylated P-site tRNA(fMet) 8bim 4 77 2.04 RF00005 URS000041AF00_83333 37553384 0030533 0006412 83333 cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Initiation complex of the E. coli 70S ribosome with mRNA containing AAm6A codon in the A-site; Acylated P-site tRNA(fMet) 8br8 Lu 57 3.35 URS0000326EAC_184922 36912103 0030533 0006412 184922 agcagaguggcgcagcggaagcguaggucgauggaucgaaaccauccucugcuacca <<<<<<<..<<<<.......>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((....[..)))).....(((((..]....)))))))))))).... Giardia ribosome in POST-T state (A1); E-site tRNA 8bsi Lu 75 3.4 RF00005 URS0000326EAC_5741 36912103 0030533 0006412 5741 agcagaguggcgcagcggaagcgugcugggcccauaacccagaggucgauggaucgaaaccauccucugcuacca <<<<<<<..<<<<.......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((....[..)))).(((((.......))))).....(((((..]....)))))))))))).... Giardia ribosome chimeric hybrid-like GDP+Pi bound state (B1); E-site tRNA 8bsj u 75 6.49 RF00005 URS0000326EAC_5741 36912103 0030533 0006412 5741 agcagaguggcgcagcggaagcgugcugggcccauaacccagaggucgauggaucgaaaccauccucugcuacca <<<<<<<..<<<<.......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... ((((((...(((.........)))..((((.......))))......((.............)).)))))).... Giardia Ribosome in PRE-T Classical State (C); tRNA 8bsj v 75 6.49 RF00005 URS0000326EAC_5741 36912103 0030533 0006412 5741 agcagaguggcgcagcggaagcgugcugggcccauaacccagaggucgauggaucgaaaccauccucugcuacca <<<<<<<..<<<<.......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... ..(((((..(((.........))).(((((.......))))).....((((.........)))))))))...... Giardia Ribosome in PRE-T Classical State (C); tRNA 8btd u 75 4.9 RF00005 URS0000326EAC_184922 36912103 0030533 0006412 184922 agcagaguggcgcagcggaagcgugcugggcccauaacccagaggucgauggaucgaaaccauccucugcuacca <<<<<<<..<<<<.......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..(((.....[...))).(((((.......))))).......(((..]....)))..))))))).... Giardia Ribosome in PRE-T Hybrid State (D1); tRNA 8btd v 75 4.9 RF00005 URS00026813BC_184922 36912103 0030533 0006412 184922 agcagaguggcgcagcggaagcgugcugggcccucaacccagaggucgauggaucgaaaccauccucugcuacca ..<<<<<..<<<<.......>>>>.<<<<<.......>>>>>.....<<.<.........>.>>>>>>>...... ...((((...(((.......)))...((((.......)))).......((.(.......).)).))))....... Giardia Ribosome in PRE-T Hybrid State (D1); tRNA 8btk AT 75 3.5 RF00005 URS0002681408_9986 37170030 0030533 0006412 9986 gccgugaucguauagugguuaguacucugcguuguggccgcagcaacnucggnucgaauccgagucacggcacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>....<<<<<.......>>>>>>>>>>>>.... (((((((...(((....[...)))..(((((.......)))))....(((((..]....)))))))))))).... Structure of the TRAP complex with the Sec translocon and a translating ribosome; P-site tRNA 8btr u 75 3.25 RF00005 URS0000326EAC_184922 36912103 0030533 0006412 184922 agcagaguggcgcagcggaagcgugcugggcccauaacccagaggucgauggaucgaaaccauccucugcuacca <<<<<<<..<<<<.......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..(((.....[...))).(((((.......))))).....(((((..]....)))))))))))).... Giardia Ribosome in PRE-T Hybrid State (D2); tRNA 8btr v 75 3.25 RF00005 URS00026813BC_184922 36912103 0030533 0006412 184922 agcagaguggcgcagcggaagcgugcugggcccucaacccagaggucgauggaucgaaaccauccucugcuacca <<<<<<<..<<<<.......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... .((((((..((((....[..))))..((((.......))))......(((((..]....)))))))))))..... Giardia Ribosome in PRE-T Hybrid State (D2); tRNA 8buu V 73 2.9 RF00005 URS00004A5E97_224308 36951104 0030533 0006412 224308 gcgggguggagcaguucgguagcucgucgggcucauaacccgaaggucgcagguucaaauccugcccccgcaa <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>.. ((((((..((((......[..)))).(((((.......))))).....(((((..]....))))))))))).. ARE-ABCF VmlR2 bound to a 70S ribosome; tRNA-fMet 8c6j 2 142 2.8 RF00004 URS00003EE995_9606 36867703 0045131 0000348 0005686 9606 aucgcuucucggccuuuuggcuaagaucaaguguaguaucuguucuuaucaguuuaauauauauuaaauggauuuuuggagcagggagauggaguccacuccacgcaucgaccugguauugcaguaccuccaggaacggugc .....................................................<<<<<<..>>>>>>.................<<<<.<<<<.>>>>>>>>..<<<<<<.<<<<<.............>>>>>..>>>>>> .....................................................((((((())))))).................((((.((((.))))))))..(((.((.(((((.............)))))..)).))) Human spliceosomal PM5 C* complex; U2 snRNA 8c6j 5 113 2.8 RF00020 URS0000118C49_9606 36867703 0000244,0000353 0005682,0046540 9606 acucugguuucucuucagaucgcauaaaucuuucgccuuuuacuaaagauuuccguggagaggaacaacucugagucuuaacccaauuuuuugagccuugccuuggcaaggcu <<<<.<<<<<<<<<<<<........<<<<<<<<...........>>>>>>>>...>>>>>>>>>>>....>.>>>>.................<<<<<<<<....>>>>>>>> ((((.((((((((((((...((...((((((((.(.......).)))))))).)))))))))))))....).)))).................((((((((....)))))))) Human spliceosomal PM5 C* complex; U5 snRNA 8c6j 6 97 2.8 RF00026 URS000035C796_9606 36867703 0030621 0000244,0000353 0005688,0046540 9606 gugcucgcuucggcagcacauauacuaaaauuggaacgauacagagaagauuagcauggccccugcgcaaggaugacacgcaaauucgugaagcguu <<<<<.<<....>>>>>>>.....................................<<...<<<.....>>>....>>................... ((((..((....)).)))).....................................((..((((.....)))..).))................... Human spliceosomal PM5 C* complex; U6 snRNA 8cas 1 75 3.3 RF00005 URS00002CB170_580240 37169754 0030533 0006412 580240 agcgccgunncgcagnggaagcgcncagggcucaunacccugaunnnnucggaucgnaaccgngcggcgcuacca <<<<<<<..<<<<.......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((....[..)))).(((((.......))))).....(((((..]....)))))))))))).... Cryo-EM structure of native Otu2-bound ubiquitinated 48S initiation complex (partial); tRNA 8ccs Bb 76 1.97 RF00005 URS000011107D_4932 38030725 0030533 0006412 4932 gcggauuuagcucaguugggagagcgccagacugaanaucuggagguccuguguucgauccacagaauucgcacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<.........>>>>>>>>>>>.... (((((((..((((........)))).(((((.......))))).....(((...........)))))))))).... 80S S. cerevisiae ribosome with ligands in hybrid-1 pre-translocation (PRE-H1) complex; Transfer RNA Phe 8ccs Cc 77 1.97 RF00005 URS000057545F_562 38030725 0030533 0006412 562 cgcgggguggagcagcccgguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... 80S S. cerevisiae ribosome with ligands in hybrid-1 pre-translocation (PRE-H1) complex; Transfer RNA fMet 8cd1 Dt 76 3.0 RF00005 URS00005AA258_208964 38443577 0030533 0006412 208964 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).((((.........)))).....(((((..]....)))))))))))).... 70S-PHIKZ014; tRNA 8cdl Bb 76 2.72 RF00005 URS000011107D_4932 38030725 0030533 0006412 4932 gcggauuuagcucaguugggagagcgccagacugaanaucuggagguccuguguucgauccacagaauucgcacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))).... 80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex; Transfer RNA Phe 8cdl Cc 77 2.72 RF00005 URS000057545F_562 38030725 0030533 0006412 562 cgcgggguggagcagcccgguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(.((...].....)).)))))))..... 80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex; Transfer RNA fMet 8cdr Bb 76 2.04 RF00005 URS000011107D_4932 38030725 0030533 0006412 4932 gcggauuuagcucaguugggagagcgccagacugaanaucuggagguccuguguucgauccacagaauucgcacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<.........>>>>>>>>>>>.... (((((((..((((........)))).(((((.......))))).....(((...........)))))))))).... Translocation intermediate 2 (TI-2) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin; Transfer RNA Phe 8cdr Cc 77 2.04 RF00005 URS000057545F_562 38030725 0030533 0006412 562 cgcgggguggagcagcccgguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))..... Translocation intermediate 2 (TI-2) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin; Transfer RNA fMet 8ceh Bb 76 2.05 RF00005 URS000011107D_4932 38030725 0030533 0006412 4932 gcggauuuagcucaguugggagagcgccagacugaanaucuggagguccuguguucgauccacagaauucgcacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<.........>>>>>>>>>>>.... (((.(((..((((........)))).(((((.......))))).....(((...........)))))).))).... Translocation intermediate 4 (TI-4) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin; Transfer RNA Phe 8ceh Cc 77 2.05 RF00005 URS000057545F_562 38030725 0030533 0006412 562 cgcgggguggagcagcccgguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))..... Translocation intermediate 4 (TI-4) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin; Transfer RNA fMet 8cf5 Bb 76 2.71 RF00005 URS000011107D_4932 38030725 0030533 0006412 4932 gcggauuuagcucaguugggagagcgccagacugaanaucuggagguccuguguucgauccacagaauucgcacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((.(((..((((........)))).((((.........)))).....(((((.......)))))))).))).... Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin; Transfer RNA Phe 8cf5 Cc 77 2.71 RF00005 URS000057545F_562 38030725 0030533 0006412 562 cgcgggguggagcagcccgguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((.........)))).(((((.......))))).....(.(((.......))).)))))))..... Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin; Transfer RNA fMet 8cg8 Bb 76 2.57 RF00005 URS000011107D_4932 38030725 0030533 0006412 4932 gcggauuuagcucaguugggagagcgccagacugaanaucuggagguccuguguucgauccacagaauucgcacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<.........>>>>>>>>>>>.... (((((((..((((........)))).(((((.......))))).....(((...........)))))))))).... Translocation intermediate 3 (TI-3) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin; Transfer RNA Phe 8cg8 Cc 77 2.57 RF00005 URS000057545F_562 38030725 0030533 0006412 562 cgcgggguggagcagcccgguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((.........)))).(((((.......))))).....(.((.........)).)))))))..... Translocation intermediate 3 (TI-3) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin; Transfer RNA fMet 8cgn Bb 77 2.28 RF00005 URS000057545F_562 38030725 0030533 0006412 562 cgcgggguggagcagcccgguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((.........)))).(((((.......))))).....((((.........))))))))))..... Non-rotated 80S S. cerevisiae ribosome with ligands; Transfer RNA fMet 8cgn Cc 77 2.28 RF00005 URS000057545F_562 38030725 0030533 0006412 562 cgcgggguggagcagcccgguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((.........)))).(((((.......))))).....((((.........))))))))))..... Non-rotated 80S S. cerevisiae ribosome with ligands; Transfer RNA fMet 8ch6 d 93 5.9 RF00026 URS000035C796_9606 37165190 0030621 0000244,0000353 0005688,0046540 9606 gugcucgcuucggcagcacauauacuaaaauuggaacgauacagagaagauuagcauggccccugcgcaaggaugacacgcucgugaagcguu <<<<<.<<<..>>>>>>>>.....................................<<...<<<.....>>>....>>............... (((((.((....))))))).....................................((..((((.....)))..).))............... Structure of a late-stage activated spliceosome (BAqr) arrested with a dominant-negative Aquarius mutant (state B complex).; RNU6-1 8ch6 e 98 5.9 RF00020 URS000075BAAE_9606 37165190 0000244,0000353 0005682,0046540 9606 gguuucucuucagaucgcauaaaucuuucgccuuuuacuaaagauuuccguggagaggaacaaucugagauuuuuugaggccuugcuuuggcaaggcu .<<<<<<<<<<.........<<<<<<<<...........>>>>>>>>....>>>>>>>>>>.................<<<<<<<......>>>>>>> .((((((((((....((...((((((((.(.......).)))))))).)).)))))))))).................(...(((......)))...) Structure of a late-stage activated spliceosome (BAqr) arrested with a dominant-negative Aquarius mutant (state B complex).; RNU5A-1 8ch6 f 137 5.9 RF00004 URS00003EE995_9606 37165190 0045131 0000348 0005686 9606 aucgcuucucggccuggcuaagaucaaguguaguaucuguucuuaucaguuuaauaucugauguccucucgaggacggauuuuuggagcagggagccacgcaucgaccugguauugcaguaccuccaggaacggugc .............................................<<<..........>>>...<<<<..>>>>.................<......><<<<<<.<<<<<.............>>>>>..>>>>>> .............................................(((..........)))...((((..)))).................(......)((((((.(((((.............)))))..)))))) Structure of a late-stage activated spliceosome (BAqr) arrested with a dominant-negative Aquarius mutant (state B complex).; RNU2-1 8civ Bb 76 2.47 RF00005 URS000011107D_4932 38030725 0030533 0006412 4932 gcggauuuagcucaguugggagagcgccagacugaanaucuggagguccuguguucgauccacagaauucgcacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<.........>>>>>>>>>>>.... (((((((..((((........)))).(((((.......))))).....(((...........)))))))))).... Translocation intermediate 5 (TI-5) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin; Transfer RNA Phe 8civ Cc 77 2.47 RF00005 URS000057545F_562 38030725 0030533 0006412 562 cgcgggguggagcagcccgguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((.........)))).(((((.......))))).....(.((.........)).)))))))..... Translocation intermediate 5 (TI-5) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin; Transfer RNA fMet 8cku Bb 76 3.11 RF00005 URS000011107D_4932 38030725 0030533 0006412 4932 gcggauuuagcucaguugggagagcgccagacugaanaucuggagguccuguguucgauccacagaauucgcacca <<<<<<<..<<<<........>>>>.<<.<<.......>>.>>.....<<<<<.......>>>>>>>>>>>>.... ((((.((..((((........)))).((.(.........).)).....(((((.......))))))).)))).... Translocation intermediate 1 (TI-1*) of 80S S. cerevisiae ribosome with ligands and eEF2 in the absence of sordarin; Transfer RNA Phe 8cku Cc 77 3.11 RF00005 URS000057545F_562 38030725 0030533 0006412 562 cgcgggguggagcagcccgguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((.........)))).(((((.......))))).....(.(((.......))).)))))))..... Translocation intermediate 1 (TI-1*) of 80S S. cerevisiae ribosome with ligands and eEF2 in the absence of sordarin; Transfer RNA fMet 8cq1 A 44 NA RF03120 URS00026814A2_2697049 37791874 0039694 2697049 ggguguggcugucacucggcugcaugcuuagugcacucacgccc <<<<<<<<.<<.<<<<.<<<.....>>>.>>>>>>.>>>>>>>> ((((((((.((.((((.(((.....))).)))))).)))))))) Stem-Loop 4 of the 5'-UTR of the SARS-CoV2 genomic RNA; 5_SL4 8crx C 76 2.78 RF00005 URS000041AF00_562 36864821 0030533 0006412 562 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Cutibacterium acnes 70S ribosome with mRNA, P-site tRNA and Sarecycline bound; P-site initiator tRNA 8cth C 74 3.3 RF00005 URS000011107D_4932 36599985 0030533 0006412 4932 gcggauuuancucagnngggagagcnccagacunaagaunuggagnucnugugnucgnuccacagaauucgcac <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.. (((((((..((((.....[..)))).((((.........)))).....(((((..]....)))))))))))).. Cryo-EM structure of human METTL1-WDR4-tRNA(Phe) complex; Phe-tRNA 8cti C 71 3.6 RF00005 URS000038803E_9606 36599985 0030533 0006412 9606 gguuccauaguguagcgguuaucacgucugcuuuacacgcagaagguccuggguucgagccccaguggaac .<<<<<<..<<<..........>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>> .((((((..(((.....[....))).(((((.......))))).....(((((..]....))))))))))) Cryo-EM structure of human METTL1-WDR4-tRNA(Val) complex; tRNA-Val-TAC-2-1 8cvj 1w 74 2.4 RF00005 URS00005AA258_562 36316410 0030533 0006412 562 gcccgganagcucaggguagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcaccn <<<<<<<..<<<<......>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((...[..)))).((((.........)))).....(((((..]....)))))))))))).... Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMSEAC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution; A-site Aminoacyl-tRNA Phe-NH-tRNAphe 8cvj 1x 77 2.4 RF00005 URS000041AF00_562 36316410 0030533 0006412 562 cgcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaaccn .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMSEAC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution; P-site Peptidyl-tRNA fMSEAC-NH-tRNAmet RNA-part 8cvj 1y 74 2.4 RF00005 URS00005AA258_562 36316410 0030533 0006412 562 gcccgganagcucaggguagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<......>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((......)))).((((.........)))).....(((((.......)))))))))))).... Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMSEAC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution; E-site Deacylated tRNAphe 8cvj 2w 72 2.4 RF00005 URS00005AA258_562 36316410 0030533 0006412 562 cccgganagcucagggagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcaccn <<<<<<..<<<<.....>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((...[.)))).((((.........)))).....(((((..]....)))))))))))..... Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMSEAC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution; A-site Aminoacyl-tRNA Phe-NH-tRNAphe 8cvj 2x 77 2.4 RF00005 URS000041AF00_562 36316410 0030533 0006412 562 cgcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaaccn .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMSEAC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution; P-site Peptidyl-tRNA fMSEAC-NH-tRNAmet RNA-part 8cvj 2y 73 2.4 RF00005 URS00005AA258_562 36316410 0030533 0006412 562 gcccgganagcucagggagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<.....>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((...[.)))).((((.........)))).....(((((..]....)))))))))))).... Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMSEAC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution; E-site Deacylated tRNAphe 8cvk 1w 74 2.5 RF00005 URS00005AA258_562 36316410 0030533 0006412 562 gcccgganagcucaggguagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcaccn <<<<<<<..<<<<......>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((...[..)))).((((.........)))).....(((((..]....)))))))))))).... Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution; A-site Aminoacyl-tRNA Phe-NH-tRNAphe 8cvk 1x 77 2.5 RF00005 URS000041AF00_562 36316410 0030533 0006412 562 cgcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaaccn .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution; P-site Peptidyl-tRNA fMRC-NH-tRNAmet RNA-part 8cvk 1y 74 2.5 RF00005 URS00005AA258_562 36316410 0030533 0006412 562 gcccgganagcucaggguagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<......>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((......)))).((((.........)))).....(((((.......)))))))))))).... Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution; E-site Deacylated tRNAphe 8cvk 2w 72 2.5 RF00005 URS00005AA258_562 36316410 0030533 0006412 562 cccgganagcucagggagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcaccn <<<<<<..<<<<.....>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((...[.)))).((((.........)))).....(((((..]....)))))))))))..... Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution; A-site Aminoacyl-tRNA Phe-NH-tRNAphe 8cvk 2x 77 2.5 RF00005 URS000041AF00_562 36316410 0030533 0006412 562 cgcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaaccn .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution; P-site Peptidyl-tRNA fMRC-NH-tRNAmet RNA-part 8cvk 2y 73 2.5 RF00005 URS00005AA258_562 36316410 0030533 0006412 562 gcccgganagcucagggagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<.....>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((...[.)))).((((.........)))).....(((((..]....)))))))))))).... Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution; E-site Deacylated tRNAphe 8cvl 1w 74 2.3 RF00005 URS00005AA258_562 36316410 0030533 0006412 562 gcccgganagcucaggguagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcaccn <<<<<<<..<<<<......>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((...[..)))).((((.........)))).....(((((..]....)))))))))))).... Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMTHSMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.30A resolution; A-site Aminoacyl-tRNA Phe-NH-tRNAphe 8cvl 1x 77 2.3 RF00005 URS000041AF00_562 36316410 0030533 0006412 562 cgcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaaccn .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMTHSMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.30A resolution; P-site Peptidyl-tRNA fMTHSMRC-NH-tRNAmet RNA-part 8cvl 1y 74 2.3 RF00005 URS00005AA258_562 36316410 0030533 0006412 562 gcccgganagcucaggguagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<......>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((......)))).((((.........)))).....(((((.......)))))))))))).... Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMTHSMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.30A resolution; E-site Deacylated tRNAphe 8cvl 2w 72 2.3 RF00005 URS00005AA258_562 36316410 0030533 0006412 562 cccgganagcucagggagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcaccn <<<<<<..<<<<.....>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((...[.)))).((((.........)))).....(((((..]....)))))))))))..... Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMTHSMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.30A resolution; A-site Aminoacyl-tRNA Phe-NH-tRNAphe 8cvl 2x 77 2.3 RF00005 URS000041AF00_562 36316410 0030533 0006412 562 cgcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaaccn .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMTHSMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.30A resolution; P-site Peptidyl-tRNA fMTHSMRC-NH-tRNAmet RNA-part 8cvl 2y 73 2.3 RF00005 URS00005AA258_562 36316410 0030533 0006412 562 gcccgganagcucagggagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<.....>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((...[.)))).((((.........)))).....(((((..]....)))))))))))).... Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMTHSMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.30A resolution; E-site Deacylated tRNAphe 8cvm C 76 2.66 RF00005 URS000041AF00_562 36864821 0030533 0006412 562 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Cutibacterium acnes 50S ribosomal subunit with P-site tRNA and Sarecycline bound in the local refined map; Initiator fMet RNA 8d9k C 65 3.72 RF00005 URS00002222F7_9606 36599982 0030533 0006412 9606 gcccggauagcucagucgguagagcaucagaucugaggguccaggguucaagucccuguucgggc <<<<<<<..<<<<........>>>>.<<<<<>>>>>.....<<<<<.......>>>>>>>>>>>> (((((((..((((.....[..)))).((((())))).....(((((..]....)))))))))))) CryoEM structure of human METTL1-WDR4 in complex with Lys-tRNA; RNA (65-MER) 8d9l C 65 4.04 RF00005 URS000022DD4A_9606 36599982 0030533 0006412 9606 gcccggauagcucagucgguagagcaucagaucugaggguccaggguucaagucccuguucgggc <<<<<<<..<<<<........>>>>.<<<<<>>>>>.....<<<<<.......>>>>>>>>>>>> (((((((..((((.....[..)))).((((())))).....(((((..]....)))))))))))) CryoEM structure of human METTL1-WDR4 in complex with Lys-tRNA and SAM; Lys-tRNA 8dfv E 60 3.06 RF00027 URS0002617785_7227 36182693 0035195 0016442 7227 ugagguaguagguuguauaguaguaauuacacaucauacuauacaaccuacuaccucucu .<<<<<<<<<<<<<<<<<<<<<<...........>.>>>>>>>>>>>>>>>>>>>>>... .((((((((((((((((((((((...........).)))))))))))))))))))))... Structural Basis of MicroRNA Biogenesis by Dicer-1 and Its Partner Protein Loqs-PB - complex IIa; RNA (60-MER) 8dg5 E 50 3.26 RF00027 URS000261776B_7227 36182693 0035195 0016442 7227 gagguaguagguuguauaguaguacauacuauacaaccuacuaccucucu <<<<<<<<<<<<<<<<<<<<<.....>>>>>>>>>>>>>>>>>>>>>... (((((((((((((((((((((.....)))))))))))))))))))))... Structural Basis of MicroRNA Biogenesis by Dicer-1 and Its Partner Protein Loqs-PB - complex IIb; RNA (60-MER) 8dp3 R 90 1.91 RF00386 URS00026813F1_12072 37029118 0039689 12072 gguaaaacagccugugggugaaacacacccacagggcccauugggcgcuagcacucugguaucaccguaccuuugugcgccuguuuuacc <<<<<<<<<<<<<<<<<<<<.....>>>>>>>>>><<<<...>>>><<..<<<<...<<<<<....>>>>>...>>>>>>>>>>>>>>>> ((((((((((((((((((((.....))))))))))((((...))))((..((((...(((((....)))))...)))))))))))))))) Crystal structure of coxsackievirus B3 cloverleaf RNA replication element; RNA (90-MER) 8eg0 C 65 3.53 RF00005 URS00002222F7_9606 36599982 0030533 0006412 9606 gcccggauagcucagucgguagagcaucagaucugaggguccaggguucaagucccuguucgggc <<<<<<<..<<<<........>>>>.<<<<<>>>>>.....<<<<<.......>>>>>>>>>>>> (((((((..((((.....[..)))).((((())))).....(((((..]....)))))))))))) CryoEM structure of human METTL1-WDR4 in complex with Lys-tRNA and SAH; RNA (65-MER) 8eiu Y 74 2.24 RF00005 URS00026813B1_562 36660825 0030533 0006412 562 gcgggguggagcagccgguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacc <<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>.... ((((((..((((.....[..)))).(((((.......))))).....(((((..]....))))))))))).... E. coli 70S ribosome with A-loop mutations U2554C and U2555C; tRNA-fMET 8eiu Z 74 2.24 RF00005 URS00026813B1_562 36660825 0030533 0006412 562 gcgggguggagcagccgguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacc <<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>.... ((((((..((((.....[..)))).(((((.......))))).....(((((..]....))))))))))).... E. coli 70S ribosome with A-loop mutations U2554C and U2555C; tRNA-fMET 8ekb 1x 76 2.7 RF00005 URS000041AF00_562 36546783 0030533 0006412 562 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, deacylated P-site tRNAmet, and thermorubin at 2.70A resolution; P-site deacylated tRNAmet 8ekb 2x 76 2.7 RF00005 URS000041AF00_562 36546783 0030533 0006412 562 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, deacylated P-site tRNAmet, and thermorubin at 2.70A resolution; P-site deacylated tRNAmet 8ekc w 74 2.7 RF00005 URS00005AA258_562 36546783 0030533 0006412 562 gcccgganagcucaggguagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<......>>>><<<<<<<.....>>>>>>.>...<<<<<.......>>>>>>>>>>>>.... (((((((..((((...[..)))).((((.........)))).....(((((..]....)))))))))))).... Escherichia coli 70S ribosome bound to thermorubin, deacylated P-site tRNAfMet and aminoacylated A-site Phe-tRNA; A-site phenylalanine tRNA 8ekc x 76 2.7 RF00005 URS000041AF00_562 36546783 0030533 0006412 562 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Escherichia coli 70S ribosome bound to thermorubin, deacylated P-site tRNAfMet and aminoacylated A-site Phe-tRNA; P-site initiator tRNA 8emm Y 76 2.1 RF00005 URS00002905B5_562 37308707 0030533 0006412 562 gcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaaccn <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Composite 70S ribosome structure for ""Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates; Met-NH-tRNA 8emm Z 76 2.1 RF00005 URS00002905B5_562 37308707 0030533 0006412 562 gcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaaccn <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Composite 70S ribosome structure for ""Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates; Met-NH-tRNA 8esq 2 150 2.8 RF00002 URS0000249ACE_4896 36423630 0003735 0002181 0005840,0022626 4896 aaaacuuucagcaacggaucucuuggcucucgcaucgaugaagaacgcagcgaaaugcgauacguaaugugaauugcagaagaaucaucgaaucuuugaacgcacugcgccuuuggguucuaccaaaggcaugccuguuugagugucauu ..........................................<<<<<<.<<.....>>>.....(.<<<......>>........>>>..)...>>>....<<<.>>><<<<<<<<......>>>>>>>>.................... ..........................................((((((.[[.....))).....(.((((.....]]......).)))..)...)))....((...))((((((((......)))))))).................... Ytm1 associated nascent 60S ribosome State 2; RNA (150-MER) 8esr 2 150 3.2 RF00002 URS0000249ACE_4896 36423630 0003735 0002181 0005840,0022626 4896 aaaacuuucagcaacggaucucuuggcucucgcaucgaugaagaacgcagcgaaaugcgauacguaaugugaauugcagaagaaucaucgaaucuuugaacgcacugcgccuuuggguucuaccaaaggcaugccuguuugagugucauu ..........................................<<<<<<.<<.....>>>.....(.<<<......>>........>>>..)...>>>....<<...>><<<<<<<<......>>>>>>>>.................... ..........................................((((((.[[.....))).....(.((((.....]]......).)))..)...)))....((...))((((((((......)))))))).................... Ytm1 associated nascent 60S ribosome (-fkbp39) State 2; RNA (150-MER) 8etc 2 147 3.1 RF00002 URS0000249ACE_4896 36423630 0003735 0002181 0005840,0022626 4896 aaaacuuucagcaacggaucucuuggcucucgcaucgaugaagaacgcagcgaaaugcgauacguaaugugaauugcagaagaaucaucgaaucuuugaacgcacauugcgccuuugggaccaaaggcaugccuguuugagugucau ..........................................<<<<<<.<<.....>>>.....(.<<<(.....>>......).>>>..)...>>>....<<.....>><<<<<<<<..>>>>>>>>................... ..........................................((((((.[[.....))).....(.((((...(.]].)....).)))..)...)))....((.....))((((((((..))))))))................... Fkbp39 associated nascent 60S ribosome State 4; RNA (147-MER) 8etg 2 146 3.4 RF00002 URS0000249ACE_4896 36423630 0003735 0002181 0005840,0022626 4896 aaaacuuucagcaacggaucucuuggcucucgcaucgaugaagaacgcagcgaaaugcgauacguaaugugaauugcagaaucaucgaaucuuugaacgcacgcgccuuuggguucuaccaaaggcaugccuguuugagugucauu ..........................................<<<<<<.<<.....>>>.....(.<<<......>>.....>>>..)...>>>....<<..>><<<<<<<<......>>>>>>>>.................... ..........................................((((((.[[.....))).....(.((((.....]]...).)))..)...)))....((..))((((((((......)))))))).................... Fkbp39 associated 60S nascent ribosome State 3; RNA (146-MER) 8eth 2 130 3.8 RF00002 URS0000249ACE_4896 36423630 0003735 0002181 0005840,0022626 4896 aaacuuucagcaacggaucucuuggcucucgcaucgaugaagaacgcagcgaaaugcgauacguaaugugaauugaaucaucgaaucuuugaacgcagcgccuuuaaaggcaugccuguuugagugucau .........................................<<<<<<<......>>>>.....<.<<<..........>>>..>...>>>....<<.>><<<<<..>>>>>................... .........................................(((((((......)))).....(.((((.......).)))..)...)))....((.))(((((())))))................... Ytm1 associated 60S nascent ribosome State 1B; RNA (130-MER) 8eti 2 152 3.7 RF00002 URS0000249ACE_4896 36423630 0003735 0002181 0005840,0022626 4896 aaacuuucagcaacggaucucuuggcucucgcaucgaugaagaacgcagcgaaaugcgauacguaaugugaauugcagaaugaaucaucgaaucuuugaacgcacauugcgccuuuggguucuaccaaaggcaugccuguuugagugucauu .........................................<<<<<<<<<....>>>>.....<.<<<......>>.........>>>..>...>>>....<<<...>>><<<<<<<<......>>>>>>>>.................... .........................................((((((.[[.....))).....(.((((...(.]].).....).)))..)...)))....((.....))((((((((......)))))))).................... Fkbp39 associated 60S nascent ribosome State 1; RNA (152-MER) 8etj 2 144 3.2 RF00002 URS0000249ACE_4896 36423630 0003735 0002181 0005840,0022626 4896 aaaacuuucagcaacggaucucuuggcucucgcaucgaugaagaacgcagcgaaaugcgauacguaaugugaauugcagaagaaucaucgaaucuuugaacgcacgcgccuuugggaccaaaggcaugccuguuugagugucau ..........................................<<<<<<<<<....>>>>.....<.<<<......>>........>>>..>...>>>....<<..>><<<<<<<<..>>>>>>>>................... ..........................................((((((.[[.....))).....(.((((...(.]].)....).)))..)...)))....((..))((((((((..))))))))................... Fkbp39 associated 60S nascent ribosome State 2; RNA (144-MER) 8eug 2 151 2.8 RF00002 URS0000249ACE_4896 36423630 0003735 0002181 0005840,0022626 4896 aaaacuuucagcaacggaucucuuggcucucgcaucgaugaagaacgcagcgaaaugcgauacguaaugugaauugcagaagaaucaucgaaucuuugaacgcacauugcgccuuuggguucuaccaaaggcaugccuguuugagugucau ..........................................<<<<<<.<<.....>>>.....(.<<<......>>........>>>..)...>>>....<<.....>><<<<<<<<......>>>>>>>>................... ..........................................((((((.[[.....))).....(.((((.....]]......).)))..)...)))....((.....))((((((((......))))))))................... Ytm1 associated nascent 60S ribosome State 3; RNA (152-MER) 8eug 9 118 2.8 RF00001 URS000024F61C_4896 36423630 0003735 0002181 0005840,0022626 4896 gucuacggccauaccuaggcgaaaacaccaguucccguccgaucacugcaguuaagcgucugagggccucguuaguacuaugguuggagacaacaugggaauccggggugcuguaggc <<<<<<<<<....<<<<<<<<.....<<<<<<............>>>>..>>....>>>>>>.>><<<<<<......<<<<<..<<....>>.>>>>>.....>>>>>>>>>>>>>>> (((((((((....((((((((.....((((((...(....)...))))..))....)))))).))((((((......(((((..((....)).))))).....))))))))))))))) Ytm1 associated nascent 60S ribosome State 3; RNA (118-MER) 8eui 2 158 3.1 RF00002 URS0000249ACE_4896 36423630 0003735 0002181 0005840,0022626 4896 aaaacuuucagcaacggaucucuuggcucucgcaucgaugaagaacgcagcgaaaugcgauacguaaugugaauugcagaauuccgugaaucaucgaaucuuugaacgcacauugcgccuuuggguucuaccaaaggcaugccuguuugagugucauu ..........................................<<<<<<.<<.....>>>.....(.<<<......>>..............>>>..)...>>>....<<.....>><<<<<<<<......>>>>>>>>.................... ..........................................((((((.[[.....))).....(.((((.....]]............).)))..)...)))....((.....))((((((((......)))))))).................... Ytm1 associated nascent 60S ribosome (-fkbp39) State 3; RNA (152-MER) 8eui 9 118 3.1 RF00001 URS000024F61C_4896 36423630 0003735 0002181 0005840,0022626 4896 gucuacggccauaccuaggcgaaaacaccaguucccguccgaucacugcaguuaagcgucugagggccucguuaguacuaugguuggagacaacaugggaauccggggugcuguaggc <<<<<<<<<....<<<<<<<<.....<<<<<..............>>>..>>....>>>>>>.>><<<<<<......<<<<<..<<....>>.>>>>>.....>>>>>>>>>>>>>>> (((((((((....((((((((.....((((((...(....)...))))..))....)))))).))((((((......(((((..((....)).))))).....))))))))))))))) Ytm1 associated nascent 60S ribosome (-fkbp39) State 3; RNA (118-MER) 8eup 2 146 3.1 RF00002 URS0000249ACE_4896 36423630 0003735 0002181 0005840,0022626 4896 aaaacuuucagcaacggaucucuuggcucucgcaucgaugaagaacgcagcgaaaugcgauacguaaugugaauugcagaagaaucaucgaaucuuugaacgcacugcgccuuugggaccaaaggcaugccuguuugagugucauu ..........................................<<<<<<<<.....>>>>.....<.<<<.......>........>>>..>...>>>....<<...>><<<<<<<<..>>>>>>>>.................... ..........................................((((((.[[.....))).....(.((((.....]]......).)))..)...)))....((...))((((((((..)))))))).................... Ytm1 associated 60S nascent ribosome State 1A; RNA (146-MER) 8euy 2 130 3.0 RF00002 URS0000249ACE_4896 36423630 0003735 0002181 0005840,0022626 4896 aaacuuucagcaacggaucucuuggcucucgcaucgaugaagaacgcagcgaaaugcgauacguaaugugaauugaaucaucgaaucuuugaacgcacugcgccuuaaggcaugccuguuugagugucau .........................................<<<<<<<......>>>>.....<.<<<..........>>>..>...>>>....<<<.>>><<<<..>>>>................... .........................................(((((((......)))).....(.((((.......).)))..)...)))....(((.)))((((()))))................... Ytm1 associated nascent 60S ribosome (-fkbp39) State 1A; RNA (148-MER) 8ev3 2 150 3.0 RF00002 URS0000249ACE_4896 36423630 0003735 0002181 0005840,0022626 4896 aaaacuuucagcaacggaucucuuggcucucgcaucgaugaagaacgcagcgaaaugcgauacguaaugugaauugcagaagaaucaucgaaucuuugaacgcacugcgccuuuggguucuaccaaaggcaugccuguuugagugucauu ..........................................<<<<<<<<.....>>>>.....<.<<<.......>........>>>..>...>>>....<<...>><<<<<<<<......>>>>>>>>.................... ..........................................((((((.[[.....))).....(.((((.....]]......).)))..)...)))....((...))((((((((......)))))))).................... Ytm1 associated 60S nascent ribosome (-Fkbp39) State 1B; RNA (150-MER) 8ev6 1w 74 2.946 RF00005 URS00005AA258_562 37537169 0030533 0006412 562 gcccgganagcucaggguagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<......>>>><<<<<<<.....>>>>>>.>...<<<<<.......>>>>>>>>>>>>.... (((((((..((((...[..)))).((((.........)))).....(((((..]....)))))))))))).... Crystal structure of the Thermus thermophilus 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs; A-site and E-site tRNAs 8ev6 1x 76 2.946 RF00005 URS000041AF00_562 37537169 0030533 0006412 562 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the Thermus thermophilus 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs; P-site tRNA 8ev6 1y 74 2.946 RF00005 URS00005AA258_562 37537169 0030533 0006412 562 gcccgganagcucaggguagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<......>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((......)))).((((.........)))).....(((((.......)))))))))))).... Crystal structure of the Thermus thermophilus 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs; A-site and E-site tRNAs 8ev6 2w 72 2.946 RF00005 URS00005AA258_562 37537169 0030533 0006412 562 cccgganagcucagggagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<..<<<<.....>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((...[.)))).((((.........))))......((((..]....)))).))))))..... Crystal structure of the Thermus thermophilus 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs; A-site and E-site tRNAs 8ev6 2x 76 2.946 RF00005 URS000041AF00_562 37537169 0030533 0006412 562 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the Thermus thermophilus 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs; P-site tRNA 8ev6 2y 73 2.946 RF00005 URS00005AA258_562 37537169 0030533 0006412 562 gcccgganagcucagggagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<.....>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((...[.)))).((((.........)))).....(((((..]....)))))))))))).... Crystal structure of the Thermus thermophilus 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs; A-site and E-site tRNAs 8ev7 1w 74 2.89 RF00005 URS00005AA258_562 37537169 0030533 0006412 562 gcccgganagcucaggguagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<......>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((...[..)))).((((.........)))).....(((((..]....)))))))))))).... Crystal structure of the Thermus thermophilus 70S ribosome in complex with kanamycin, mRNA, and A-, P-, and E-site tRNAs; A-site and E-site tRNAs 8ev7 1x 76 2.89 RF00005 URS000041AF00_562 37537169 0030533 0006412 562 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the Thermus thermophilus 70S ribosome in complex with kanamycin, mRNA, and A-, P-, and E-site tRNAs; P-site tRNA 8ev7 1y 74 2.89 RF00005 URS00005AA258_562 37537169 0030533 0006412 562 gcccgganagcucaggguagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<......>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((......)))).((((.........)))).....(((((.......)))))))))))).... Crystal structure of the Thermus thermophilus 70S ribosome in complex with kanamycin, mRNA, and A-, P-, and E-site tRNAs; A-site and E-site tRNAs 8ev7 2w 72 2.89 RF00005 URS00005AA258_562 37537169 0030533 0006412 562 cccgganagcucagggagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<..<<<<.....>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((...[.)))).((((.........))))......((((..]....)))).))))))..... Crystal structure of the Thermus thermophilus 70S ribosome in complex with kanamycin, mRNA, and A-, P-, and E-site tRNAs; A-site and E-site tRNAs 8ev7 2x 76 2.89 RF00005 URS000041AF00_562 37537169 0030533 0006412 562 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the Thermus thermophilus 70S ribosome in complex with kanamycin, mRNA, and A-, P-, and E-site tRNAs; P-site tRNA 8ev7 2y 73 2.89 RF00005 URS00005AA258_562 37537169 0030533 0006412 562 gcccgganagcucagggagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<.....>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((...[.)))).((((.........)))).....(((((..]....)))))))))))).... Crystal structure of the Thermus thermophilus 70S ribosome in complex with kanamycin, mRNA, and A-, P-, and E-site tRNAs; A-site and E-site tRNAs 8f3c R 47 3.4 RF00522 URS000268143D_562 37264140 0008616 562 gcagagguucuagcuacacccucuauaaaaaacuaaggaccacacga ..<<<<<....((......>>>>>........))............. ...((((....[[......)))).........]]............. Cryo-EM consensus structure of Escherichia coli que-PEC (paused elongation complex) RNA Polymerase minus preQ1 ligand; RNA (47-MER) 8fb3 A 34 3.0 RF00522 URS00023119CB_2126436 36762498,35017488,36227562 0008616 2126436 ugugguucgcaaccaucccacauaaaaaaacuag <<<<<............>>>>>............ (((((....[.......)))))...........] PreQ1-1 (type-1) riboswitch with stacked metabolites and a C10-G34 base pair in the expression platform; RNA (34-MER) Riboswitch 8fcs A 71 NA RF00661,RF04091 URS0000001EB3_9606 36711709 0035195 0016442 9606 ggagaggaggcaagaugcuggcauagcuguugaacugggaaccugcuaugccaacauauugccaucuuucc <<<<<<<.<<<<<.<<<.<<<<<<<<<.<<<........>>>..>>>>>>>>>.>>>.>>>>>.>>>>>>> (((((((.(((((.(((.(((((((((.(((........)))..))))))))).))).))))).))))))) Structure of pre-miR-31 reveals an active role in Dicer processing; microRNA 31 8fiz BB 75 3.8 RF00005 URS000041AF00_562 36931247 0030533 0006412 562 cgcgggguggagcagccgguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacc .<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>.... .(((.((..((((........)))).(((((.......))))).....(.(((.......))).))).))).... Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex); P-site tRNA 8fli A 828 3.8 RF00029 URS0002915696_146786 38057551 0000373 146786 ggguuggccgagcguugcgacgcgaaagcuagccagaugauugucccacuagcccaacaagcuagaacgggaccgguuguucccccaaccguagccuagggaggcaugcgugacugguaacggucaggugugaagcccucccgacaauguagcccgaaccgcaagguugaagcugaauccgugaggaggaagcaacuucaccagugucaggugauagggaacuaggcuugaggguauggugagcacaugcgaagugaugucagaagccucgucacagaccaacaggccaaagacacugauaggccugagccaaaacggcaaauggauaggcuacaucgcucgcucgucgguguacggggacgucaauccaucggggcacagucaccaccuaaccccucgugucaucugguuggaacgcgguaagcccguauccucgccuugaacacucaaggcaggcaugcugaugggggugcggguaugggaugcaggagaaagcgaaugccggucuguaauggaccggauagggguugaggagacaauccaacaucaccccgcccgaaagggagcagacuuccugcuggucucucuuugcgagauagccuguagaaccucuugaauggagacaaggcaaauggcaguggaacaaaccacuggugcggucaccaaccaaacggccgugagguaaagaggcugcaagugcguaucgcaaaggcguucgcgccgguuccucuugaaagaggggcuuugagaggccugagccggauguggggaaacucacaaguccgguucuuagggggcggggauggcauucgugccucccugcuaccc .{{{{...((((((..{{..<<<.....<<<<<<<<<<<<<.<<<<<.<<<<<.......>>>>>...>>>>>.<<<<..[[[[[.>>>>..<<<<..<<<<<<<<<<<..<<<<......>>>>..>>>>>..}}>>>>>>..........<<<.<<<<....>>>><..<<<...<<<....>>>...>>>..>.<<<<<.......>>>>>..>>>.....>>>><<<<<<...<<<<.<<....>>...<<<<<.......<<<<<......}}}}..<<<<<<.............>>>>>>.<<<.....>>>..<<<<<..<..<<<<<<<..)))))).>>>>>>>.]]]]]>.....>>>>>.>>>>>...>>>>>>>>>....>>>>>>.>>>>>>>>>>>>>...>>>....<<<<<<<<<<<...<<..........>>...<......>....>>>>>>>>>>>.......<<<<<.....<<.....<<<<<<<.....>>>>>>>...<<<<<....<.......>.......>>>>>.<<<....>>>.>>......>>>>>.<<<<<<<<.<<<<<<..<.<<.<<<<<..<<<<<<...<<<.<<<...<<<.....<<<<<<......>>>>>>.>>>.>>>.>>>...................>>>>>>>>>>>.>>....>>>>>>>.<<<<....>>>><<<<<<<<<....>>>>>>>>>..>>>>>>>>.<<<<<<<<<<<<<<....>>>>>..>>>>>>>>>...<<<<<<<<<<<.<<<<....>>>>>>>>>>>>.>>> .<<.<<..[[[[[[..[[...((......((((((((((((.(((((.(((((.......)))))...))))).(((.(.{{{{{).)))..((((..(((((((((.(.((((((....)))))).).)))..]]))))))..........(((.((.(....).))(..(((...(((....)))...)))..)..((((...[[[.))))...))).....))))((((((...((((.((....))...(.(.(.......(((.((...>.>.>>..((((((...]]].......))))))..((.....))...((((((.((.(((..((..]]]]]].))..))))}}}}})...).))))))).)))...).).)))))....)))))).))))))))))))....)).....(((((((((((...((..........))....(....).....))))))))))).......((((.......(.....(((((.(......))))))..[((((.(.................].))))).(((....))).)........)))).((((((((.(..(((....((.(((((...(((((...(((.(((...(((.....((((((......)))))).))).))).)))...................))))).))))).)).....)))..).((((....)))).(((((((......)))))))...)))))))).((((((((((((((....)))))..)))))))))....((.(..((((.((((....))))))))..)..)). Cryo-EM structure of a group II intron immediately before branching; Group II Intron 8fmw X 76 2.86 RF00005 URS0002915681_224326 37907464 0030533 0006412 224326 gucgcuguagcucaguugguagagcauaggacugaaaauccuugugucaggaguucgauucuccucggcgacacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>.>....<<<<<.......>>>>>>>>>>>>.... (((((.(..((((.....[..))))..(((.........)))......(((((..]....)))))).))))).... The structure of a hibernating ribosome in the Lyme disease pathogen; E-site t-RNA 8fon QV 74 3.64 RF00005 URS000077A941_562 36924943 0030533 0006412 562 gggucguuagcucaggguagagcaguugauunuunaucaauuggucgcagguucgaauccugcacgacccacca <<<<<<<..<<<<......>>>>.<<<<<<.....>>>>>>.....<<<<.........>>>>>>>>>>>.... (((((((..((((......))))((((((.......))))))....(((.(.......).)))))))))).... Crystal structure of tRNA^Lys(SUU) bound to AUA codon in the ribosomal P site; P-site tRNA^Lys(SUU) 8fon XV 74 3.64 RF00005 URS000077A941_562 36924943 0030533 0006412 562 gggucguuagcucaggguagagcaguugauunuunaucaauuggucgcagguucgaauccugcacgacccacca <<<<<<<..<<<<......>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((......))))((((((.......))))))....(((.(.......).)))))))))).... Crystal structure of tRNA^Lys(SUU) bound to AUA codon in the ribosomal P site; P-site tRNA^Lys(SUU) 8fr8 E 77 2.76 RF00005 URS000043C91B_246196 37216503 0030533 0006412 246196 cgcgggguggagcagcucgguagcucgcugggcucauaacccagaggucgcagguucgaauccuguccccgcuacca .........<<<<.........>>>>.<<<<........>>.>>......<<<........>.>>............ .........((((.........)))).(.((........))..)......(.(........)..)............ Structure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complex; fMet tRNA (77-MER) 8fto Z 76 1.85 RF00005 URS00002905B5_562 37419664 0030533 0006412 562 gcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaaccn <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))..... E. coli 70S ribosome with an improved MS2 tag inserted in H98; P-site tRNA-fMet 8fuk 1 60 3.36 RF01317 URS0002915674_256318 0006952 256318 cuuagaaaaguacagcgcggcugaaaucaucauuaaagcgguucacugccgcacaggcag .............................................<<<<<.....>>>>> .............................................(((((.....))))) V. cholerae TniQ-Cascade complex with Type III-B crRNA; Type III-B crRNA 8fvy g 74 2.94 RF00005 URS00029156E7_941442 38242118 0030533 0006412 941442 ggguaauuggcgcaguugguuagcgcgcgggucucauaaucccgagcucgugaguucgauccgcacauucccca <<<<.....<<...........>><.<............>.>....<..<<.......>>..>...>>>>.... (..(.....((...........))(................)....(...(.......)...)...)..).... 40S subunit of the Giardia lamblia 80S ribosome; tRNA 8fzr R 77 3.6 RF00005 URS00003199EC_562 37076488 0030533 0006412 562 gcgcccuuagcucaguuggauagagcaacgaccuucuaagucgugggccgcagguucgaauccugcagggcgcgcca <<<<<.....<<<.........>>>..<<<...........>>>......<<<.........>>>...>>>>>.... ....(......(...........)....((...........)).......(.............)...)........ CryoEM structure of yeast Arginyltransferase 1 (ATE1); Arg tRNA 8g00 R 47 3.4 RF00522 URS000268143D_562 37264140 0008616 562 gcagagguucuagcuacacccucuauaaaaaacuaaggaccacacga ..<<<<<....((......>>>>>........))............. ...((((....[[......)))).........]]............. Cryo-EM structure of 3DVA component 0 of Escherichia coli que-PEC (paused elongation complex) RNA Polymerase minus preQ1 ligand; RNA (47-MER) 8g1s R 47 3.7 RF00522 URS000268143D_1423 37264140 0008616 1423 gcagagguucuagcuacacccucuauaaaaaacuaaggaccacacga ..<<<<<....((......>>>>>........))............. ...((((....[[......)))).........]]............. Cryo-EM structure of 3DVA component 1 of Escherichia coli que-PEC (paused elongation complex) RNA Polymerase minus preQ1 ligand; RNA (47-MER) 8g29 1w 74 2.55 RF00005 URS00005AA258_562 38238495 0030533 0006412 562 gcccgganagcucaggguagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcaccn <<<<<<<..<<<<......>>>><<<<<<<.....>>>>>>.>...<<<<<.......>>>>>>>>>>>>.... (((((((..((((...[..)))).((((.........)))).....(((((..]....)))))))))))).... Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.55A resolution; A-site Aminoacylated Phe-tRNAphe 8g29 1x 77 2.55 RF00005 URS000041AF00_562 38238495 0030533 0006412 562 cgcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaaccn .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.55A resolution; P-site Aminoacylated fMet-tRNAmet 8g29 1y 74 2.55 RF00005 URS00005AA258_562 38238495 0030533 0006412 562 gcccgganagcucaggguagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<......>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((...[..)))).((((.........)))).....(((((..]....)))))))))))).... Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.55A resolution; E-site Deacylated tRNAphe 8g29 2w 72 2.55 RF00005 URS00005AA258_562 38238495 0030533 0006412 562 cccgganagcucagggagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcaccn <<<<<<..<<<<.....>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((...[.)))).((((.........)))).....(((((..]....)))))))))))..... Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.55A resolution; A-site Aminoacylated Phe-tRNAphe 8g29 2x 77 2.55 RF00005 URS000041AF00_562 38238495 0030533 0006412 562 cgcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaaccn .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.55A resolution; P-site Aminoacylated fMet-tRNAmet 8g29 2y 73 2.55 RF00005 URS00005AA258_562 38238495 0030533 0006412 562 gcccgganagcucagggagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<.....>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((...[.)))).((((.........)))).....(((((..]....)))))))))))).... Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.55A resolution; E-site Deacylated tRNAphe 8g2a 1w 74 2.45 RF00005 URS00005AA258_562 38238495 0030533 0006412 562 gcccgganagcucaggguagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcaccn <<<<<<<..<<<<......>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((...[..)))).((((.........)))).....(((((..]....)))))))))))).... Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-tRNAphe, peptidyl P-site fMTHSMRC-tRNAmet, and deacylated E-site tRNAphe at 2.45A resolution; A-site Aminoacylated Phe-tRNAphe 8g2a 1x 77 2.45 RF00005 URS000041AF00_562 38238495 0030533 0006412 562 cgcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaaccn .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-tRNAphe, peptidyl P-site fMTHSMRC-tRNAmet, and deacylated E-site tRNAphe at 2.45A resolution; P-site Peptidyl-tRNA fMTHSMRC-tRNAmet RNA-part 8g2a 1y 74 2.45 RF00005 URS00005AA258_562 38238495 0030533 0006412 562 gcccgganagcucaggguagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<......>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((...[..)))).((((.........)))).....(((((..]....)))))))))))).... Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-tRNAphe, peptidyl P-site fMTHSMRC-tRNAmet, and deacylated E-site tRNAphe at 2.45A resolution; E-site Deacylated tRNAphe 8g2a 2w 72 2.45 RF00005 URS00005AA258_562 38238495 0030533 0006412 562 cccgganagcucagggagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcaccn <<<<<<..<<<<.....>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((...[.)))).((((.........)))).....(((((..]....)))))))))))..... Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-tRNAphe, peptidyl P-site fMTHSMRC-tRNAmet, and deacylated E-site tRNAphe at 2.45A resolution; A-site Aminoacylated Phe-tRNAphe 8g2a 2x 77 2.45 RF00005 URS000041AF00_562 38238495 0030533 0006412 562 cgcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaaccn .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-tRNAphe, peptidyl P-site fMTHSMRC-tRNAmet, and deacylated E-site tRNAphe at 2.45A resolution; P-site Peptidyl-tRNA fMTHSMRC-tRNAmet RNA-part 8g2a 2y 73 2.45 RF00005 URS00005AA258_562 38238495 0030533 0006412 562 gcccgganagcucagggagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<.....>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((...[.)))).((((.........)))).....(((((..]....)))))))))))).... Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-tRNAphe, peptidyl P-site fMTHSMRC-tRNAmet, and deacylated E-site tRNAphe at 2.45A resolution; E-site Deacylated tRNAphe 8g2b 1w 73 2.55 RF00005 URS00005AA258_562 38238495 0030533 0006412 562 gcccgganagcucaggguagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacc <<<<<<<..<<<<......>>>><<<<<<<.....>>>>>>.>...<<<<<.......>>>>>>>>>>>>... (.(((((..((((...[..)))).((((.........)))).....(((((..]....)))))))))).)... Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAphe, and aminoacylated P-site fMet-tRNAmet at 2.55A resolution; A-site and E-site Deacylated tRNAphe 8g2b 1x 76 2.55 RF00005 URS000041AF00_562 38238495 0030533 0006412 562 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaaccn <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAphe, and aminoacylated P-site fMet-tRNAmet at 2.55A resolution; P-site Aminoacylated fMet-tRNAmet 8g2b 1y 74 2.55 RF00005 URS00005AA258_562 38238495 0030533 0006412 562 gcccgganagcucaggguagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<......>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((...[..)))).((((.........)))).....(((((..]....)))))))))))).... Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAphe, and aminoacylated P-site fMet-tRNAmet at 2.55A resolution; A-site and E-site Deacylated tRNAphe 8g2b 2w 70 2.55 RF00005 URS00005AA258_562 38238495 0030533 0006412 562 cccgganagcucagggagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcac <<<<<<..<<<<.....>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>... ((((((..((((...[.)))).((((.........)))).....(((((..]....)))))))))))... Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAphe, and aminoacylated P-site fMet-tRNAmet at 2.55A resolution; A-site and E-site Deacylated tRNAphe 8g2b 2x 76 2.55 RF00005 URS000041AF00_562 38238495 0030533 0006412 562 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaaccn <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAphe, and aminoacylated P-site fMet-tRNAmet at 2.55A resolution; P-site Aminoacylated fMet-tRNAmet 8g2b 2y 73 2.55 RF00005 URS00005AA258_562 38238495 0030533 0006412 562 gcccgganagcucagggagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<.....>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....)))).((((.........)))).....(((((.......)))))))))))).... Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAphe, and aminoacylated P-site fMet-tRNAmet at 2.55A resolution; A-site and E-site Deacylated tRNAphe 8g2c 1w 74 2.65 RF00005 URS00005AA258_562 38238495 0030533 0006412 562 gcccgganagcucaggguagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcaccn <<<<<<<..<<<<......>>>><<<<<<<.....>>>>>>.>...<<<<<.......>>>>>>>>>>>>.... (((((((..((((...[..)))).((((.........)))).....(((((..]....)))))))))))).... Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with tylosin, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.65A resolution; A-site Aminoacylated Phe-tRNAphe 8g2c 1x 77 2.65 RF00005 URS000041AF00_562 38238495 0030533 0006412 562 cgcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaaccn .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with tylosin, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.65A resolution; P-site Aminoacylated fMet-tRNAmet 8g2c 1y 74 2.65 RF00005 URS00005AA258_562 38238495 0030533 0006412 562 gcccgganagcucaggguagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<......>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((...[..)))).((((.........)))).....(((((..]....)))))))))))).... Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with tylosin, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.65A resolution; E-site Deacylated tRNAphe 8g2c 2w 72 2.65 RF00005 URS00005AA258_562 38238495 0030533 0006412 562 cccgganagcucagggagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcaccn <<<<<<..<<<<.....>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((...[.)))).((((.........)))).....(((((..]....)))))))))))..... Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with tylosin, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.65A resolution; A-site Aminoacylated Phe-tRNAphe 8g2c 2x 77 2.65 RF00005 URS000041AF00_562 38238495 0030533 0006412 562 cgcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaaccn .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with tylosin, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.65A resolution; P-site Aminoacylated fMet-tRNAmet 8g2c 2y 73 2.65 RF00005 URS00005AA258_562 38238495 0030533 0006412 562 gcccgganagcucagggagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<.....>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((...[.)))).((((.........)))).....(((((..]....)))))))))))).... Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with tylosin, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.65A resolution; E-site Deacylated tRNAphe 8g2d 1w 74 2.7 RF00005 URS00005AA258_562 38238495 0030533 0006412 562 gcccgganagcucaggguagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<......>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((...[..)))).((((.........)))).....(((((..]....)))))))))))).... Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with tylosin, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.70A resolution; A-site and E-site Deacylated tRNAphe 8g2d 1x 76 2.7 RF00005 URS000041AF00_562 38238495 0030533 0006412 562 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with tylosin, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.70A resolution; P-site Deacylated tRNAmet 8g2d 1y 74 2.7 RF00005 URS00005AA258_562 38238495 0030533 0006412 562 gcccgganagcucaggguagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<......>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((...[..)))).((((.........)))).....(((((..]....)))))))))))).... Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with tylosin, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.70A resolution; A-site and E-site Deacylated tRNAphe 8g2d 2w 72 2.7 RF00005 URS00005AA258_562 38238495 0030533 0006412 562 cccgganagcucagggagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<..<<<<.....>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((...[.)))).((((.........))))......((((..]....)))).))))))..... Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with tylosin, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.70A resolution; A-site and E-site Deacylated tRNAphe 8g2d 2x 76 2.7 RF00005 URS000041AF00_562 38238495 0030533 0006412 562 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with tylosin, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.70A resolution; P-site Deacylated tRNAmet 8g2d 2y 73 2.7 RF00005 URS00005AA258_562 38238495 0030533 0006412 562 gcccgganagcucagggagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<.....>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((...[.)))).((((.........)))).....(((((..]....)))))))))))).... Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with tylosin, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.70A resolution; A-site and E-site Deacylated tRNAphe 8g2w R 47 3.7 RF00522 URS000268143D_562 37264140 0008616 562 gcagagguucuagcuacacccucuauaaaaaacuaaggaccacacga ..<<<<<....((......>>>>>........))............. ...((((....[[......)))).........]]............. Cryo-EM structure of 3DVA component 2 of Escherichia coli que-PEC (paused elongation complex) RNA Polymerase minus preQ1 ligand; RNA (47-MER) 8g4i g 74 3.24 RF00005 URS00029156E7_941442 38242118 0030533 0006412 941442 ggguaauuggcgcaguugguuagcgcgcgggucucauaaucccgagcucgugaguucgauccgcacauucccca <<<<.....<<...........>><.<..<......>...>>....<..<.........>..>...>>>>.... (..(.....((...........))(.(.............))....(...(.......)...)...)..).... 40S ribosomal subunit of the 80S Giardia intestinalis assemblage A ribosome with Emetine bound in V1 conformation; tRNA 8g4s g 74 3.14 RF00005 URS00029156E7_941442 38242118 0030533 0006412 941442 ggguaauuggcgcaguugguuagcgcgcgggucucauaaucccgagcucgugaguucgauccgcacauucccca <<<<.....<<...........>><.<............>.>.......<.........>......>>>>.... (..(.....((...........))(................)....(...(.......)...)...)..).... 40S ribosomal subunit of the 80S Giardia intestinalis assemblage A ribosome with Emetine bound in V2 conformation with mRNA and three tRNAs.; E-site tRNA 8g4s h 74 3.14 RF00005 URS00029156CD_941442 38242118 0030533 0006412 941442 gcgggguggagcagcgguagcucgucgggcucauaacccgaaggucgucggnucaaauccggcccccgcaacca <<<<<<..<<<<.......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((....[..)))).(((((.......))))).....(.(((..]....))).)))))))..... 40S ribosomal subunit of the 80S Giardia intestinalis assemblage A ribosome with Emetine bound in V2 conformation with mRNA and three tRNAs.; P-site tRNA 8g4s i 75 3.14 RF00005 URS00029156C9_941442 38242118 0030533 0006412 941442 gcccggauagcucagucgguagagcaggggauuuaaaauccccguguccuugguucgauuccgaguccgggcacc <<.<<<<..<<<..........>>>.<<<<<<.....>>>>>>......<<<<.......>>>>.>>>>.>>... .(..((....(............)...((((.......))))........(((.......)).)..))..).... 40S ribosomal subunit of the 80S Giardia intestinalis assemblage A ribosome with Emetine bound in V2 conformation with mRNA and three tRNAs.; A-site tRNA 8g4w R 47 3.8 RF00522 URS000268143D_562 37264140 0008616 562 gcagagguucuagcuacacccucuauaaaaaacuaaggaccacacga ...<<<<....((......>>>>.........))............. ..(((((....[[......)))))........]]............. Cryo-EM consensus structure of Escherichia coli que-PEC (paused elongation complex) RNA Polymerase plus preQ1 ligand; RNA (47-MER) 8g5y Pt 77 2.29 RF00005 URS000057545F_9606 37020024 0030533 0006412 9606 cgcggggnggagcagcccggnagcucgucgggnucauaacccgaagnucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... mRNA decoding in human is kinetically and structurally distinct from bacteria (IC state); P-site tRNA 8g5z At 76 2.64 RF00005 URS00005AA258_562 37020024 0030533 0006412 562 gcccgganagcucagncggnagagcaggggauugaanauccccgunuccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>><<<<<<<.....>>>>>>.>...<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..))))(((((.........)))).)...(((((..]....)))))))))))).... mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state); A-site tRNA Phe 8g5z Pt 77 2.64 RF00005 URS000057545F_562 37020024 0030533 0006412 562 cgcggggnggagcagcccggnagcucgucgggnucauaacccgaagnucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state); P-site tRNA fMet 8g60 At 76 2.54 RF00005 URS00005AA258_9606 37020024 0030533 0006412 9606 gcccgganagcucagncggnagagcaggggauugaanauccccgunuccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<.........>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..))))(((((.........)))).)...(((((..]....)))))))))))).... mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state); A-site tRNA 8g60 Pt 77 2.54 RF00005 URS000057545F_9606 37020024 0030533 0006412 9606 cgcggggnggagcagcccggnagcucgucgggnucauaacccgaagnucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))..... mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state); P-site tRNA 8g61 At 76 2.94 RF00005 URS00005AA258_562 37020024 0030533 0006412 562 gcccgganagcucagncggnagagcaggggauugaaaauccccgunuccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((............)).((((.........)))).....(((((.......)))))))))))).... mRNA decoding in human is kinetically and structurally distinct from bacteria (AC state); A-site tRNA 8g61 Pt 77 2.94 RF00005 URS000057545F_562 37020024 0030533 0006412 562 cgcggggnggagcagcccggnagcucgucgggnucauaacccgaagnucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))..... mRNA decoding in human is kinetically and structurally distinct from bacteria (AC state); RNA (77-MER) 8g6j At 76 2.8 RF00005 URS00005AA258_9606 37020024 0030533 0006412 9606 gcccgganagcucagncggnagagcaggggauugaanauccccgunuccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>><<<<<<<.....>>>>>>.>...<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..))))(((((.........)))).)...(((((..]....)))))))))))).... mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state 2); A-site tRNA 8g6j Pt 77 2.8 RF00005 URS000057545F_9606 37020024 0030533 0006412 9606 cgcggggnggagcagcccggnagcucgucgggnucauaacccgaagnucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state 2); P-site tRNA 8g6w Y 74 2.02 RF00005 URS00005AA258_562 37396857 0030533 0006412 562 gcccggauagcucaggguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<...<<<<......>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>.>>>>>>.... ((((((...(((........))).(((((.......))))).....((.((.......)).)).)))))).... Structure of WT E.coli 70S ribosome complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site ortho-aminobenzoic acid charged NH-tRNAPhe; A-site oABZ-tRNAPhe 8g6w Z 75 2.02 RF00005 URS00026813D0_562 37396857 0030533 0006412 562 gcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacc <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>.... ((((((..((((......[..)))).(((((.......))))).....(.(((..]....))).))))))).... Structure of WT E.coli 70S ribosome complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site ortho-aminobenzoic acid charged NH-tRNAPhe; P-site fMet-tRNAfMet 8g6x Y 74 2.31 RF00005 URS00005AA258_562 37396857 0030533 0006412 562 gcccggauagcucaggguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<...<<<<......>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>.>>>>>>.... ((((((...((((......)))).((((.........)))).....((.((.......)).)).)))))).... Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site meta-aminobenzoic acid charged NH-tRNAPhe; A-site tRNA Phe 8g6x Z 75 2.31 RF00005 URS00026813D0_562 37396857 0030533 0006412 562 gcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacc <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>.... ((((((..((((......[..)))).(((((.......))))).....(((((..]....))))))))))).... Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site meta-aminobenzoic acid charged NH-tRNAPhe; P-site tRNA fMet 8g6y Y 74 2.09 RF00005 URS00005AA258_562 37396857 0030533 0006412 562 gcccggauagcucaggguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<...<<<<......>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>.>>>>>>.... ((((((...((((......)))).((((.........)))).....((.((.......)).)).)))))).... Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site 3-aminopyridine-4-carboxylic acid charged NH-tRNAPhe; A-site tRNA Phe 8g6y Z 75 2.09 RF00005 URS00026813D0_562 37396857 0030533 0006412 562 gcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacc <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>.... ((((((..((((......[..)))).(((((.......))))).....(((((..]....))))))))))).... Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site 3-aminopyridine-4-carboxylic acid charged NH-tRNAPhe; P-site tRNA fMet 8g7e R 47 3.9 RF00522 URS000268143D_562 37264140 0008616 562 gcagagguucuagcuacacccucuauaaaaaacuaaggaccacacga ...<<<<...(((......>>>>.........)))............ ..(((((....[[......)))))........]]............. Cryo-EM structure of 3DVA component 0 of Escherichia coli que-PEC (paused elongation complex) RNA Polymerase plus preQ1 ligand; RNA (47-MER) 8g8z R 48 4.3 RF00522 URS0002681450_562 37264140 0008616 562 gcagagguucuagcuacacccucuauaaaaaacuaaggaccacacgag ...<<<<...(((......>>>>.........)))............. ..(((((....[[......)))))........]].............. Cryo-EM structure of 3DVA component 1 of Escherichia coli que-PEC (paused elongation complex) RNA Polymerase plus preQ1 ligand; RNA (48-MER) 8g9z E 87 2.07 RF01852 URS000014E598_9606 36929010 0030533 0006412 9606 gcccggaugauccucaguggucuggggugcaggcuaaaccuguagcugucuagcgacagagugguucaauuccaccuuucgggcgcc <<<<<<<....<<<<<<....>>>>>><<<<<<.....>>>>>>.<<<<<....>>>>>.<<<<.......>>>>..>>>>>>>... (((((((.(..((((((..[.))))))((((((.....)))))).(((((....))))).((((..]....))))).)))))))... High-resolution crystal structure of the human selenomethionine-derived SepSecS-tRNASec complex; RNA (90-MER) 8gap B 159 3.8 RF00025 URS0000402983_5911 37330293 2.7.7.49 0003720 0007004 0000333 5911 auacccgcuuaauucauucagaucuguaauagaacugucauucaaccccaaaaaucuagugcugauauaaccuucaccaauuagguucaaauaagugguaaugcgggacaaaagacuaucgacauuugauacacuauuuaucaauggaugucuuauuuu ...<<<<<..........<<<.<<<<...>>>>.>>>...............................<<<<<..((((.((>>>>>.....)).))))...>>>>>.....<<<<.<<<..<<<.<<<<<.......>>>>>>>>>>>>>>>...... .(.(((((..........(((.(((.....))).)))...............................(((((..[[[[.[[))))).....]].]]]]...))))))....((((.((...(((.((((.........))))))).))))))...... Structure of LARP7 protein p65-telomerase RNA complex in telomerase; Telomerase RNA 8glp Pt 77 1.67 RF00005 URS000057545F_9606 37020024 0030533 0006412 9606 cgcggggnggagcagcccggnagcucgucgggnucauaacccgaagnucgucgguucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure); P-site tRNA 8gzp S 67 3.6 RF02340 URS0002681453_32630 37478848 0039694 32630 aguuguuagucuguguggaccgacaaggacaguuccaaaucggaagcugcuuaacacaguucuaaca ...<<<<<<.<<<<<<...<<<<...<<<....>>>...>>>><<<...>>>.>>>>>>..>>>>>> ....(((((..(((((...((((...(((....)))...))))((((.)))).)))))...))))). Cryo-EM structure of the NS5-SLA complex; RNA 8gzq S 66 3.9 RF02340 URS0002681453_32630 37478848 0039694 32630 aguuguuagucuguguggaccgacaaggacaguuccaaaucggaagcugcuuaacacaguucuaac ....<<<<<.<<<<<<...<<<<...<<<....>>>...>>>><<<...>>>.>>>>>>..>>>>> ....(((((..(((((...((((...(((....)))...))))((((.)))).)))))...))))) Cryo-EM structure of the NS5-NS3-SLA complex; RNA 8h1c C 73 4.5 RF00005 URS00026813F8_4530 36912079 0030533 0006412 4530 ncgagcguaguucaaugguaaaacaucuccuugccaaggagaagauacggguucgauucccgccgcucgcccc <<<<<<<..<<<.........>>>.<<<<<<.....>>>>>>.....<<<<.......>>>>.>>>>>>>... (((((((..(((.....[...))).(((((.......))))).....((((..]....)))).)))))))... Cryo-EM structure of Oryza sativa plastid glycyl-tRNA synthetase in complex with two tRNAs (one in tRNA binding state and the other in tRNA locked state); tRNA(gly) (74-MER) 8h1c D 71 4.5 RF00005 URS00026813F8_4530 36912079 0030533 0006412 4530 ncgagcguaguucaaugguaaaacaucuccuugccaaggagaagauacggguucgauucccgccgcucgcc <<<<<<<..<<<.........>>>.<<<<<<.....>>>>>>.....<<<<.......>>>>.>>>>>>>. (((((((..((......[....)).(((((.......))))).....((((..]....)))).))))))). Cryo-EM structure of Oryza sativa plastid glycyl-tRNA synthetase in complex with two tRNAs (one in tRNA binding state and the other in tRNA locked state); tRNA(gly) (74-MER) 8h2h A 692 3.2 RF00029 URS00021ED979_1358 36344519 0000373 1358 gugcgcccagauaggguguuaagucaaguaguuuaagguacuacucuguaagauaacacagaaaacagccaaccuaaccgaaaagcgaaagcugauacgggaacagagcacgguuggaaagcgaugaguuaccuaaagacaaucggguacgacugagucgcaauguuaaucagauauaagguauaaguuguguuuacugaacgcaaguuucuaauuucgguuaugugucgauagaggaaagugucugaaaccucuaguacaaagaaagguaaguuaugguuguggacuuaucuguuaucaccacauuuguacaaucuguaggagaaccuaugggaacgaaacgaaagcgaugccgagaaucugaauuuaccaagacuuaacacuaacuggggauacccuaaacaagaaugccuaaaggaggaaaaaggcuauagcacuagagcuugaaaaucuugcaaggguacggaguacucguaguagucugagaaggguaacgcccuuuacauggcaaagggguacaguuauuguguacuaaaauuaaaaauugauuagggaggaaaaccucaaaccaacaauggcaauuuuagacaauaacagagccguauacuccgagagggguacguacgguucccgaagaggguggugcaaaccagucacaguaaugugaacaaggcgguaccucccuacuucac ..[..<<<<<....<<<<<<<<<<<..<<<<<.......>>>>><<<<.....((((.>>>>.<<<<.<<<<<<...<...<<.<<....>>>..>..>.........]..>>>>>>...<<<<....<.......(((............>.....>>>>..>>>>...<<<<.....<<<<<.<<<.......>>>...<<<..<<.<........<.........>..............)))............<<<<<<...<<<<<<<<.........>>>>>>>>.))))......>.>>>>>........<<<......>>>.........>>>....>>>>>>>>.....>>>>..........>>>>>>>>>>>..>>>>>...<<<......<.......<....>..........<<<...<..>...>>>.........>.....>>.>.....<<<<<.............<<<<<.......>>>>>...........>>.>>>.<<<<<<<................<<.............................>>............>>>>>>>.<<<<<<<<<<<<<<....>>>>>..>>>>>>>>>..<<<<<<<<..<<<............<....>.............>>>..>>>>.>>>>.. .....(((((....(((((((((((..((((.........))))((((.....[.[[.)))).((((.((((((....(.....((....))......)............))))))...((((....(..(((.....[....)))....).....))))..))))...((((.....((....((.(......)))...(((...(..................................]................((..(...(.((((((.........)))))).).]].]......)...)).........(..........)..........).....)))...)).....))))..........)))))))))))..)))))(...((......(.(......(..)..........((..............)).......).)....))...)...(.................((((((.....))))))................).((((((..................(..........((.....))..........)..............))))))..(((((((((((((....)))))..))))))))...((((((((..(.((....(......(......).......)..))..).)))).)))).. Cryo-EM structure of a Group II Intron Complexed with its Reverse Transcriptase; LtrB 8h6e 6A 59 3.2 RF00026 38658629 0030621 0000244,0000353 0005688,0046540 9606 acgauacagagaagauuagcauggccccugcgcaaggaugacauucgugaagcguauuu ........................................................... ........................................................... Cryo-EM structure of human exon-defined spliceosome in the late pre-B state.; U6 snRNA 8h6e 5A 114 3.2 RF00020 38658629 0000244,0000353 0005682,0046540 9606 cucugguuucucuucagaucgcauaaaucuuucgccuuuuacuaaagauuuccguggagaggaacaacucugagucuuaacccaauuuuuugaggccuugcuuuggcaaggcua <<<.<<<<<<<<<<<<........<<<<<<<<...........>>>>>>>>...>>>>>>>>>>>....>.>>>...................<<<<<<<<....>>>>>>>>. (((.((((((((((((...((...((((((((.(.......).)))))))).)))))))))))))....).)))....................(((((((....))))))).. Cryo-EM structure of human exon-defined spliceosome in the late pre-B state.; U5 snRNA 8h6e 4A 125 3.2 RF00015 38658629 0017070 0000244,0000353 0005687,0046540 9606 agcuuugcgcaguggcaguaucguagccaaugaggucuauccgaggcgcgauuugcuaauugaaaacuucccaauagccgugacgacuagucggcacuggcaauuuuugacagucucgagacugg ...................<<<<<.<<<.....<<.....>>..>>>>>>>>........................<<<<<<.<<<<..>>>>.>>>.>>>.........<<<<<<..>>>>>>. ...................(((((.(((.....((.....))..))))))))........................((((((.((((())))).))).))).........((((((())))))). Cryo-EM structure of human exon-defined spliceosome in the late pre-B state.; U4 snRNA 8h6e 2A 109 3.2 RF00004 URS00003EE995_9606 38658629 0045131 0000348 0005686 9606 cgcuucucggccaguguaguaucuguucuuaucaguuuaauaucugauggauuuuuggagcagggagccacgcaucgaccugguauugcaguaccuccaggaacggugc ..............................<<<<<........>>>>>...............<......><<<<<<.<<<<<.............>>>>>..>>>>>> ..............................(((((........)))))...............(..()..)(((.((.(((((.............)))))..)).))) Cryo-EM structure of human exon-defined spliceosome in the late pre-B state.; U2 snRNA 8h6j 6A 54 3.25 RF00026 38658629 0030621 0000244,0000353 0005688,0046540 9606 uuggaaaagauuagcauggccccugcgcaaggaugacauucgugaagcguauuu ...................................................... ...................................................... Cryo-EM structure of human exon-defined spliceosome in the mature pre-B state.; U6 snRNA 8h6j 5A 114 3.25 RF00020 38658629 0000244,0000353 0005682,0046540 9606 cucugguuucucuucagaucgcauaaaucuuucgccuuuuacuaaagauuuccguggagaggaacaacucugagucuuaacccaauuuuuugaggccuugcuuuggcaaggcua <<<.<<<<<<<<<<<<........<<<<<<<<...........>>>>>>>>...>>>>>>>>>>>....>.>>>...................<<<<<<<<....>>>>>>>>. (((.((((((((((((...((...((((((((...........)))))))).)))))))))))))....).)))....................(((((((....))))))).. Cryo-EM structure of human exon-defined spliceosome in the mature pre-B state.; U5 snRNA 8h6j 4A 125 3.25 RF00015 38658629 0017070 0000244,0000353 0005687,0046540 9606 agcuuugcgcaguggcaguaucguagccaaugaggucuauccgaggcgcgauuuugcuaauugaaaacuucccaauagccgugacgacuagucggcacuggcaauuuuugacagucucgagacug ...................<<<<<.<<<.....<<.....>>..>>>>>>>>.........................<<<<<<.<<<<..>>>>.>>>.>>>.........<<<<<<<>>>>>>> ...................(((((.(((.....((.....))..)))))))).........................((((((.((((())))).))).))).........((((((())))))) Cryo-EM structure of human exon-defined spliceosome in the mature pre-B state.; U4 snRNA 8h6j 2A 109 3.25 RF00004 URS00003EE995_9606 38658629 0045131 0000348 0005686 9606 cgcuucucggccaguguaguaucuguucuuaucaguuuaauaucugauggauuuuuggagcagggagccacgcaucgaccugguauugcaguaccuccaggaacggugc ..............................<<<<<........>>>>>...............<......><<<<<<.<<<<<.............>>>>>..>>>>>> ..............................(((((........)))))...............(..()..)(((.((.(((((.............)))))..)).))) Cryo-EM structure of human exon-defined spliceosome in the mature pre-B state.; U2 snRNA 8h6k 5A 115 2.7 RF00020 URS000075BAAE_9606 38658629 0000244,0000353 0005682,0046540 9606 acucugguuucucuucagaucgcauaaaucuuucgccuuuuacuaaagauuuccguggagaggaacaacucugagucuuaacccaauuuuuugaggccuugcuuuggcaaggcua .<<<..<<<<<<<<<<<........<<<<<<<<...........>>>>>>>>...>>>>>>>>>>>......>>>...................<<<<<<<<....>>>>>>>>. .(((..(((((((((((...((...((((((((.(.......).)))))))).)))))))))))))......)))....................(((((((....))))))).. Cryo-EM structure of human exon-defined spliceosome in the mature B state.; U5 snRNA 8h6k 6A 60 2.7 RF00026 38658629 0030621 0000244,0000353 0005688,0046540 9606 aacgauacagagaagauuagcauggccccugcgcaaggaugacauucgugaagcguauuu ............................................................ ............................................................ Cryo-EM structure of human exon-defined spliceosome in the mature B state.; U6 snRNA 8h6k 4A 129 2.7 RF00015 38658629 0017070 0000244,0000353 0005687,0046540 9606 nagcuuugcgcaguggcaguaucguagccaaugaggucuauccgaggcgcgauuauugcuaauuuuuucccccgccgugacgacuugcaauauagucggcacuggcaauuuuugacagucucgagacug ....................<<<<<.<<<.....<<.....>>..>>>>>>>>....................<<<<<<.<<<<<........>>>>>.>>>.>>>.........<<<<<<<>>>>>>> ...................(((((.(((.....((.....))..))))))))....................((((((.(((((........))))).))).)))..........(((((()))))). Cryo-EM structure of human exon-defined spliceosome in the mature B state.; U4 snRNA 8h6k 2A 109 2.7 RF00004 URS00003EE995_9606 38658629 0045131 0000348 0005686 9606 cgcuucucggccaguguaguaucuguucuuaucaguuuaauaucugauggauuuuuggagcagggagccacgcaucgaccugguauugcaguaccuccaggaacggugc ..............................<<<<<........>>>>>...............<......><<<<<<.<<<<<.............>>>>>..>>>>>> ..............................(((((........)))))...............(..()..)(((.((.(((((.............)))))..)).))) Cryo-EM structure of human exon-defined spliceosome in the mature B state.; U2 snRNA 8h6l 5A 115 2.6 RF00020 URS000075BAAE_9606 38658629 0000244,0000353 0005682,0046540 9606 acucugguuucucuucagaucgcauaaaucuuucgccuuuuacuaaagauuuccguggagaggaacaacucugagucuuaacccaauuuuuugaggccuugcuuuggcaaggcua .<<<..<<<<<<<<<<<........<<<<<<<<...........>>>>>>>>...>>>>>>>>>>>......>>>...................<<<<<<<<....>>>>>>>>. .(.(..(((((((((((...((...((((((((.(.......).)))))))).)))))))))))))......).)....................(((((((....))))))).. Cryo-EM structure of human exon-defined spliceosome in the early B state.; U5 snRNA 8h6l 6A 59 2.6 RF00026 38658629 0030621 0000244,0000353 0005688,0046540 9606 acgauacagagaagauuagcauggccccugcgcaaggaugacauucgugaagcguauuu ........................................................... ........................................................... Cryo-EM structure of human exon-defined spliceosome in the early B state.; U6 snRNA 8h6l 4A 129 2.6 RF00015 38658629 0017070 0000244,0000353 0005687,0046540 9606 nagcuuugcgcaguggcaguaucguagccaaugaggucuauccgaggcgcgauuauugcuaauuuuuucccccgccgugacgacuugcaauauagucggcacuggcaauuuuugacagucucgagacug ....................<<<<<.<<<.....<<.....>>..>>>>>>>>....................<<<<<<.<<<<<........>>>>>.>>>.>>>.........<<<<<<<>>>>>>> ...................(((((.(((.....((.....))..))))))))....................((((((.(((((........))))).))).)))..........(((((()))))). Cryo-EM structure of human exon-defined spliceosome in the early B state.; U4 snRNA 8h6l 2A 109 2.6 RF00004 URS00003EE995_9606 38658629 0045131 0000348 0005686 9606 cgcuucucggccaguguaguaucuguucuuaucaguuuaauaucugauggauuuuuggagcagggagccacgcaucgaccugguauugcaguaccuccaggaacggugc ..............................<<<<<........>>>>>...............<......><<<<<<.<<<<<.............>>>>>..>>>>>> ..............................(((((........)))))...............(..()..)(((.((.(((((.............)))))..)).))) Cryo-EM structure of human exon-defined spliceosome in the early B state.; U2 snRNA 8hd6 N 419 3.73 RF00028 URS00026813C3_5911 0000372 5911 cucucuaaauagcaauauuuaccuuuggagggaaaaguuaucaggcaugcaccugguagcuagucuuuaaaccaauagauugcaucgguuuaaaaggcaagaccgucaaauugcgggaaaggggucaacagccguucaguaccaagucucaggggaaacuuugagauggccuugcaaaggguaugguaauaagcugacggacaugguccuaaccacgcagccaaguccuaagucaacagaucuucuguugauauggaugcaguucacaaacuaaaugucggucggggaagauguauucuucucauaagauauagucggaccucuccuuaaugggagcuagcggaugaagugaugcaacacuggagccgcugggaacuaauuuguaugcgaaaguauauugauuaguuuuggaguacucg <<<<<<<<<....<.....>...>>>>>>>>>...<<<<<<<<<<..(((.>>>>>>>>>>.<<<<<<<<<<<......<<<<<<.>>>>>.>>>>>>..<<<<<.<....<<<<<<...<<<<<<.....<<<.<<<<.<<...<<<<<<<<<....>>>>>>>>>..<<..)))..>>.....>>......>>>>>>>....>>>>>>..>>.>>>><<...<<<<...<<<<<<<<<...>>>>>>>>>..>>>>...>>......((((...>.>>>>>.<<<<<<<.....>>>>>>>........))))..((((.<<<<<....>>>>><<<<<<<....<<<<>>>>>>>>>>....>>>>>>>.<<<<<<<<.<<<<<......>>>>>.>>>>>>>>..)).....)). (((((((((....((...))...)))))))))...((((((((((..{{{.)))))))))).(((((((((((....(.[[[[[[))))))).)))))..(((((.(....((((((...((((((.....(((.((((.(((..(((((((((....)))))))))..((..}}.}.))....)))......)))))))....))))))..)).))))((...((((...((((((((.....))))))))..))))...))...[..[[[[...).))))).(((((((.....)))))))........]]]].]((((.(((((....)))))(((((((.....(((]]]]]]))).....))))))).(((((((..((((((....))))))..)))))))..)).....)). The relaxed pre-Tet-S1 state of G264A mutated Tetrahymena group I intron with 6nt 3'/5'-exon and 2-aminopurine nucleoside; The relaxed pre-Tet-S1 state molecule of co-transcriptional folded G264A mutant Tetrahymena group I intron with 6nt 3'/5'-exon and 2-aminopurine nucleoside 8hd7 N 419 3.52 RF00028 URS00026813C3_5911 0000372 5911 cucucuaaauagcaauauuuaccuuuggagggaaaaguuaucaggcaugcaccugguagcuagucuuuaaaccaauagauugcaucgguuuaaaaggcaagaccgucaaauugcgggaaaggggucaacagccguucaguaccaagucucaggggaaacuuugagauggccuugcaaaggguaugguaauaagcugacggacaugguccuaaccacgcagccaaguccuaagucaacagaucuucuguugauauggaugcaguucacaaacuaaaugucggucggggaagauguauucuucucauaagauauagucggaccucuccuuaaugggagcuagcggaugaagugaugcaacacuggagccgcugggaacuaauuuguaugcgaaaguauauugauuaguuuuggaguacucg <<<<<<<<<..<.<<...>>.>.>>>>>>>>>...<<<<<<<<<<..(((.>>>>>>>>>>.<<<<<<<<<<<......<<<<<<.>>>>>.>>>>>>..<<<<<.<....<<<<<<...<<<<<<.....<<<.<<<<.<<...<<<<<<<<<....>>>>>>>>>..<...)))...>.....>>......>>>>>>>....>>>>>>..>>.>>>><<...<<<<...<<<<<<<<<...>>>>>>>>>..>>>>...>>......((((...>.>>>>>.<<<<<<<.....>>>>>>>........))))..((((.<<<<<....>>>>><<<<<<<....<<<<>>>>>>>>>>....>>>>>>>.<<<<<<<<.<<<<<......>>>>>.>>>>>>>>..)).....)). (((((.(((..(.((...)).).))).)))))...((((((((((..{{{.)))))))))).(((((((((((....(.[[[[[[))))))).)))))..(((((.(....((((((...((((((.....(((.((((.(((..(((((((((....)))))))))..(...}}.}..)....)))......)))))))....))))))..)).))))((...((((...((((((((.....))))))))..))))...))...[..[[[[...).))))).(((((((.....)))))))........]]]].]((((.(((((....)))))(((((((.....(((]]]]]]))).....))))))).(((((((...(((.(....).)))...)))))))..)).....)). The intermediate pre-Tet-S1 state of G264A mutated Tetrahymena group I intron with 6nt 3'/5'-exon and 2-aminopurine nucleoside; The intermediate pre-Tet-S1 state molecule of co-transcriptional folded G264A mutant Tetrahymena group I intron with 6nt 3'/5'-exon and 2-aminopurine nucleoside 8hj4 B 113 3.1 RF01344 URS000197CF53_604162 36744495 0006952 604162 uaacuuuacguuguagcucccuuucucgaaagagaaccguugcuacaauaaggccgucugaaaagaugugccgcaacgcucugccccuuaaagcgcuuuaaggggcaucguuu .........<<<<<<<<..<..<<<<<....>>>>>..>..>>>>>>>>..<<<.<.<<....>>.>..>>>..<<<<...<<<<<<<<<<<<..>>>>>>>>>>>>.>>>>. .........((((((((..(..(..((....))..)..)..))))))))..(((((.((....)).)).)))..((((...((((((((((((())))))))))))).)))). CryoEM structure of an anti-CRISPR protein AcrIIC5 bound to Nme1Cas9-sgRNA complex; sgRNA 8hk1 H 148 2.7 RF00004 URS00003EE995_9606 36797247 0045131 0000348 0005686 9606 gccggcuaagaucaaguguaguaucuguucuuaucaguuuaauaucugauuccucgaggaggauuuuuggagcagggagauggaauaggagcuugcuccguccacuccacgcaucgaccugguauugcaguaccuccaggaacggugc <<..>>...<<.<<.<<<...>>>.>>.>>..<<<<<........>>>>><<<<..>>>>...............<<<<.<<<<...<<<<....>>>>.>>>>>>>>..<<<<<<.<<<<<.............>>>>>..>>>>>> ((()))...((.((.((.....)).)).))...((((........)))).((((()))))...............(((..(((....((((....))))..))).)))..(((.((..((((.............))))...)).))) The cryo-EM structure of human pre-17S U2 snRNP; U2 snRNA 8hky AATN 76 4.45 RF00005 URS00005AA258_330779 37604686 0030533 0006412 330779 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<...<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>.>>>>>>.... ((((((...((((........)))).(((((.......))))).....((.((.......)).)).)))))).... Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome; tRNA (76-MER) 8hky APTN 76 4.45 RF00005 URS00005AA258_330779 37604686 0030533 0006412 330779 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<...<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>.>>>>>>.... ((((((...((((.....[..)))).(((((.......))))).....(((((..]....))))).)))))).... Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome; tRNA (76-MER) 8hky AETN 76 4.45 RF00005 URS00005AA258_330779 37604686 0030533 0006412 330779 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<...<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>.>>>>>>.... ((((((...((((.....[..)))).(((((.......))))).....((.((..]....)).)).)))))).... Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome; tRNA (76-MER) 8hkz APTN 76 4.78 RF00005 URS00005AA258_330779 37604686 0030533 0006412 330779 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<...<<<<........>>>><<<<<<<.....>>>>>>.>...<<<<<.......>>>>>.>>>>>>.... ((((((...((((.....[..)))).(((((.......))))).....((.((..]....)).)).)))))).... Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome; tRNA (76-MER) 8hkz AETN 76 4.78 RF00005 URS00005AA258_330779 37604686 0030533 0006412 330779 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<...<<<<........>>>>.<<<<<<.....>>>>>>......<<<<.......>>>>..>>>>>>.... ((((((...((((.....[..)))).(((((.......))))).....(((((..]....))))).)))))).... Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome; tRNA (76-MER) 8hl1 APTN 76 3.93 RF00005 URS00005AA258_330779 37604686 0030533 0006412 330779 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<...<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>.>>>>>>.... ((((((...((((.....[..)))).(((((.......))))).....((.((..]....)).)).)))))).... Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome; tRNA (76-MER) 8hl1 AETN 76 3.93 RF00005 URS00005AA258_330779 37604686 0030533 0006412 330779 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>......<<<<.......>>>>.>>>>>>>.... (((((((..((((........)))).(((((.......))))).....((.((.......)).))))))))).... Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome; tRNA (76-MER) 8hl2 APTN 76 4.1 RF00005 URS00005AA258_330779 37604686 0030533 0006412 330779 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<...<<<<........>>>><<<<<<<.....>>>>>>.>...<<<<<.......>>>>>.>>>>>>.... ((((((...((((.....[..)))).(((((.......))))).....(((((..]....))))).)))))).... Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome; tRNA (76-MER) 8hl2 AETN 76 4.1 RF00005 URS00005AA258_330779 37604686 0030533 0006412 330779 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>......<<<<.......>>>>.>>>>>>>.... (((((((..((((........)))).(((((.......))))).....((.((.......)).))))))))).... Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome; tRNA (76-MER) 8hl3 APTN 76 4.8 RF00005 URS00005AA258_330779 37604686 0030533 0006412 330779 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<...<<<<........>>>><<<<<<<.....>>>>>>.>...<<<<<.......>>>>>.>>>>>>.... ((((((...((((.....[..)))).(((((.......))))).....(((((..]....))))).)))))).... Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome; tRNA (76-MER) 8hl3 AETN 76 4.8 RF00005 URS00005AA258_330779 37604686 0030533 0006412 330779 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<...<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>.>>>>>>.... ((((((...((((........)))).(((((.......))))).....((.((.......)).)).)))))).... Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome; tRNA (76-MER) 8hl4 APTN 76 4.62 RF00005 URS00005AA258_330779 37604686 0030533 0006412 330779 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<...<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>.>>>>>>.... ((((((...((((.....[..)))).(((((.......))))).....((.((..]....)).)).)))))).... Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome; tRNA (76-MER) 8hl5 AATN 76 5.72 RF00005 URS00005AA258_330779 37604686 0030533 0006412 330779 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<...<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>.>>>>>>.... ((((((...((((........)))).(((((.......))))).....((.((.......)).)).)))))).... Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome; tRNA (76-MER) 8hl5 APTN 76 5.72 RF00005 URS00005AA258_330779 37604686 0030533 0006412 330779 gcccggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcacca <<<<<<...<<<<........>>>>.<<<<<<.....>>>>>>......<<<<.......>>>>..>>>>>>.... ((((((...((((.....[..)))).(((((.......))))).....((.((..]....)).)).)))))).... Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome; tRNA (76-MER) 8hmy T 90 2.94 RF00005 URS00026813F2_9606 37028420 0030533 0006412 9606 gggcucuguggcgcaauggauagcgcauuggacuucuagugacgaauagagcaauucaaagguuguggguucgaaucccaccagagucgg .<<<<<<<..<<<<........>>>>.<<<<...<<<<........>>>>.....>>>>.....<<<<<.......>>>>>>>>>>>>.. .(((((((..((((........)))).((((((.(((..........))))...))))).....(((((.......)))))))))))).. Cryo-EM structure of the human pre-catalytic TSEN/pre-tRNA complex; Pre-tRNA 8i0p B 98 3.4 RF00020 39068178 0000244,0000353 0005682,0046540 9606 gguuucucuucagaucgcauaaaucuuucgccuuuuacuaaagauuuccguggagaggaacaaccccaauuuuuugaggccuugcuuuggcaaggcua .<<<<<<<<<<<........<<<<<<<<.<.......>.>>>>>>>>...>>>>>>>>>>>................<<<<<<<<....>>>>>>>>. .(((.((((.((....(...((((((((.(.......).)))))))).).)).)))).))).................(((((((....))))))).. The cryo-EM structure of human pre-Bact complex; U5 snRNA 8i0p F 95 3.4 RF00026 URS00001EC8D7_9606 39068178 0030621 0000244,0000353 0005688,0046540 9606 gugcucgcuucggcagcacauauacuaaaauuggaacgauacagagaagauuagcauggccccugcgcaaggaugacacgcaaauucgugaagcg <<<<<.<<<..>>>>>>>>..........................................<<<.....>>>....................... (((((.((....))))))).....................................(....(((.....))).....)................. The cryo-EM structure of human pre-Bact complex; U6 snRNA 8i0p H 165 3.4 RF00004 39068178 0045131 0000348 0005686 9606 cgcuucucggccuuuuggcuaagaucaaguguaguaucuguucuuaucaguuuaauaucugauguccucucgaggacggauuuuuggagcagggagauggaauaggagcuugcuccguccacuccacgcaucgaccugguauugcaguaccuccaggaacggugc ..............................................<<<<........>>>>..<<<<<..>>>>>................<<<..<<<<...<<<<....>>>>.>>>>.>>>..<<<<<<.<<<<<.............>>>>>..>>>>>> ...............................................(((........)))..(.((((..)))).)...............(((..(((....((((....))))..))).)))..(((.((..((((.............))))...)).))) The cryo-EM structure of human pre-Bact complex; U2 snRNA 8i0r B 98 3.0 RF00020 39068178 0000244,0000353 0005682,0046540 9606 gguuucucuucagaucgcauaaaucuuucgccuuuuacuaaagauuuccguggagaggaacaaccccaauuuuuugaggccuugcuuuggcaaggcua .<<<<<<<<<<<........<<<<<<<<.<.......>.>>>>>>>>...>>>>>>>>>>>................<<<<<<<<....>>>>>>>>. .(((.(((((((....(...((((((((.(.......).)))))))).).))))))).))).................(((((((....))))))).. The cryo-EM structure of human Bact-I complex; U5 snRNA 8i0r F 97 3.0 RF00026 39068178 0030621 0000244,0000353 0005688,0046540 9606 gugcucgcuucggcagcacauauacuaaaauuggaacgauacagagaagauuagcauggccccugcgcaaggaugacacgcaaauucgugaagcguu <<<<<.<<....>>>>>>>.....................................<<...<<<.....>>>....>>................... (((((.((....))))))).....................................((..((((.....)))..).))................... The cryo-EM structure of human Bact-I complex; U6 snRNA 8i0r H 167 3.0 RF00004 39068178 0045131 0000348 0005686 9606 aucgcuucucggccuuuuggcuaagaucaaguguaguaucuguucuuaucaguuuaauaucugauguccucucgaggacggauuuuuggagcagggagauggaauaggagcuugcuccguccacuccacgcaucgaccugguauugcaguaccuccaggaacggugc ................................................<<<<........>>>>..<<<<<..>>>>>................<<<..<<<....<<<<....>>>>..>>>.>>>..<<<<<<.<<<<<.............>>>>>..>>>>>> .................................................(((........)))..(.((((..)))).)...............((...(((....((((....))))..)))..))..(((.((..((((.............))))...)).))) The cryo-EM structure of human Bact-I complex; U2 snRNA 8i0s B 98 4.2 RF00020 39068178 0000244,0000353 0005682,0046540 9606 gguuucucuucagaucgcauaaaucuuucgccuuuuacuaaagauuuccguggagaggaacaaccccaauuuuuugaggccuugcuuuggcaaggcua .<<<<<<<<<<<........<<<<<<<<...........>>>>>>>>...>>>>>>>>>>>................<<<<<<<<....>>>>>>>>. .(((.(((((((....(...((((((((.(.......).)))))))).).))))))).))).................(((((((....))))))).. The cryo-EM structure of human Bact-II complex; U5 snRNA 8i0s F 97 4.2 RF00026 39068178 0030621 0000244,0000353 0005688,0046540 9606 gugcucgcuucggcagcacauauacuaaaauuggaacgauacagagaagauuagcauggccccugcgcaaggaugacacgcaaauucgugaagcguu <<<<<.<......>>>>>>.....................................<<...<<<.....>>>....>>................... (((((.((....))))))).....................................((..((((.....)))..).))................... The cryo-EM structure of human Bact-II complex; U6 snRNA 8i0s H 167 4.2 RF00004 39068178 0045131 0000348 0005686 9606 aucgcuucucggccuuuuggcuaagaucaaguguaguaucuguucuuaucaguuuaauaucugauguccucucgaggacggauuuuuggagcagggagauggaauaggagcuugcuccguccacuccacgcaucgaccugguauugcaguaccuccaggaacggugc ................................................<<<<........>>>>.<<<<<<..>>>>>>...............<<<<.<<<<...<<<<....>>>>.>>>>>>>>..<<<<<<.<<<<<.............>>>>>..>>>>>> .................................................(((........)))..(.((((..)))).)...............(((..((((...((((....)))).)))).)))..(((.((..((((.............))))...)).))) The cryo-EM structure of human Bact-II complex; U2 snRNA 8i0t B 98 3.0 RF00020 39068178 0000244,0000353 0005682,0046540 9606 gguuucucuucagaucgcauaaaucuuucgccuuuuacuaaagauuuccguggagaggaacaaccccaauuuuuugaggccuugcuuuggcaaggcua .<<<<<<<<<<<........<<<<<<<<...........>>>>>>>>...>>>>>>>>>>>................<<<<<<<<....>>>>>>>>. .(((.(((((((....(...((((((((.(.......).)))))))).).))))))).))).................(((((((....))))))).. The cryo-EM structure of human Bact-III complex; U5 snRNA 8i0t F 97 3.0 RF00026 39068178 0030621 0000244,0000353 0005688,0046540 9606 gugcucgcuucggcagcacauauacuaaaauuggaacgauacagagaagauuagcauggccccugcgcaaggaugacacgcaaauucgugaagcguu <<<<<.<......>>>>>>.....................................<<...<<<.....>>>....>>................... (((((.((....))))))).....................................((..((((.....)))..).))................... The cryo-EM structure of human Bact-III complex; U6 snRNA 8i0t H 167 3.0 RF00004 39068178 0045131 0000348 0005686 9606 aucgcuucucggccuuuuggcuaagaucaaguguaguaucuguucuuaucaguuuaauaucugauguccucucgaggacggauuuuuggagcagggagauggaauaggagcuugcuccguccacuccacgcaucgaccugguauugcaguaccuccaggaacggugc ................................................<<<<........>>>>.<<<<<<..>>>>>>...............<<<<.<<<<...<<<<....>>>>.>>>>>>>>..<<<<<<.<<<<<.............>>>>>..>>>>>> .................................................(((........)))..(.((((..)))).)...............(((..((((...((((....)))).)))).)))..(((.((..((((.............))))...)).))) The cryo-EM structure of human Bact-III complex; U2 snRNA 8i0u B 98 3.3 RF00020 39068178 0000244,0000353 0005682,0046540 9606 gguuucucuucagaucgcauaaaucuuucgccuuuuacuaaagauuuccguggagaggaacaaccccaauuuuuugaggccuugcuuuggcaaggcua .<<<<<<<<<<<........<<<<<<<<...........>>>>>>>>...>>>>>>>>>>>................<<<<<<<<....>>>>>>>>. .(((.(((((((....(...((((((((.(.......).)))))))).).))))))).))).................(((((((....))))))).. The cryo-EM structure of human Bact-IV complex; U5 snRNA 8i0u F 97 3.3 RF00026 39068178 0030621 0000244,0000353 0005688,0046540 9606 gugcucgcuucggcagcacauauacuaaaauuggaacgauacagagaagauuagcauggccccugcgcaaggaugacacgcaaauucgugaagcguu <<<<<.<<....>>>>>>>.....................................<<...<<<.....>>>....>>................... (((((.((....))))))).....................................((..((((.....)))..).))................... The cryo-EM structure of human Bact-IV complex; U6 snRNA 8i0u H 167 3.3 RF00004 39068178 0045131 0000348 0005686 9606 aucgcuucucggccuuuuggcuaagaucaaguguaguaucuguucuuaucaguuuaauaucugauguccucucgaggacggauuuuuggagcagggagauggaauaggagcuugcuccguccacuccacgcaucgaccugguauugcaguaccuccaggaacggugc ................................................<<<<........>>>>.<<<<<<..>>>>>>...............<<<<.<<<<...<<<<....>>>>.>>>>>>>>..<<<<<<.<<<<<.............>>>>>..>>>>>> .................................................(((........)))..(.((((..)))).)...............(((..((((...((((....)))).)))).)))..(((.((..((((.............))))...)).))) The cryo-EM structure of human Bact-IV complex; U2 snRNA 8i0v B 98 3.0 RF00020 39068178 0000244,0000353 0005682,0046540 9606 gguuucucuucagaucgcauaaaucuuucgccuuuuacuaaagauuuccguggagaggaacaaccccaauuuuuugaggccuugcuuuggcaaggcua .<<<<<<<<<<<........<<<<<<<<...........>>>>>>>>...>>>>>>>>>>>................<<<<<<<<....>>>>>>>>. .(((.(((((((....(...((((((((.(.......).)))))))).).))))))).))).................(((((((....))))))).. The cryo-EM structure of human post-Bact complex; U5 snRNA 8i0v F 97 3.0 RF00026 39068178 0030621 0000244,0000353 0005688,0046540 9606 gugcucgcuucggcagcacauauacuaaaauuggaacgauacagagaagauuagcauggccccugcgcaaggaugacacgcaaauucgugaagcguu <<<<<.<<....>>>>>>>.....................................<<...<<<.....>>>....>>................... (((((.((....))))))).....................................((..((((.....)))..).))................... The cryo-EM structure of human post-Bact complex; U6 snRNA 8i0v H 151 3.0 RF00004 39068178 0045131 0000348 0005686 9606 aucgcuucucggccuuuuggcuaagaucaaguguaguaucuguuuaucaguuuaauaucugauggauuuuuggagcagggagauggaauaggagcuugcuccguccacuccacgcaucgaccugguauugcaguaccuccaggaacggugc ..............................................<<<<........>>>>................<<<<.<<<<...<<<<....>>>>.>>>>>>>>..<<<<<<.<<<<<.............>>>>>..>>>>>> ...............................................(((........))).................(((..((((...((((....)))).)))).)))..(((.((..((((.............))))...)).))) The cryo-EM structure of human post-Bact complex; U2 snRNA 8i0w B 98 3.4 RF00020 39068178 0000244,0000353 0005682,0046540 9606 gguuucucuucagaucgcauaaaucuuucgccuuuuacuaaagauuuccguggagaggaacaaccccaauuuuuugaggccuugcuuuggcaaggcua .<<<<<<<<<<<........<<<<<<<<...........>>>>>>>>...>>>>>>>>>>>................<<<<<<<<....>>>>>>>>. .(((.(((((((....(...((((((((.(.......).)))))))).).))))))).))).................(((((((....))))))).. The cryo-EM structure of human C complex; U5 snRNA 8i0w F 97 3.4 RF00026 39068178 0030621 0000244,0000353 0005688,0046540 9606 gugcucgcuucggcagcacauauacuaaaauuggaacgauacagagaagauuagcauggccccugcgcaaggaugacacgcaaauucgugaagcguu <<<<<.<<<..>>>>>>>>.....................................<<...<<<.....>>>....>>................... (((((.((....))))))).....................................((..((((.....)))..).))................... The cryo-EM structure of human C complex; U6 snRNA 8i0w H 139 3.4 RF00004 URS00003EE995_9606 39068178 0045131 0000348 0005686 9606 aucgcuucucggccuuuuggcuaagaucaaguguaguaucuguucuuuuaauauguccucuaccgaggacaauauuaaggauuuuuggagcagggagccacgcaucgaccugguauugcaguaccuccaggaacggugc ...............................................<<<<<<<<<<<<<....>>>>>>.>>>>>>>...............<......><<<<<<.<<<<<.............>>>>>..>>>>>> ...............................................(((((((((((((....)))))).)))))))...............(..()..)(((.((.(((((.............)))))..)).))) The cryo-EM structure of human C complex; U2 snRNA 8i7n N 418 2.98 RF00028 URS00026813C8_5911 0000372 5911 cucucuaaauagcaauauuuaccuuuggagggaaaaguuaucaggcaugcaccugguagcuagucuuuaaaccaauagauugcaucgguuuaaaaggcaagaccgucaaauugcgggaaaggggucaacagccguucaguaccaagucucaggggaaacuuugagauggccuugcaaaggguaugguaauaagcugacggacaugguccuaaccacgcagccaaguccuaagucaacagaucuucuguugauauggaugcaguucacaaacuaaaugucggucggggaagauguauucuucucauaagauauagucggaccucuccuuaaugggagcuagcggaugaagugaugcaacacuggagccgcugggaacuaauuuguaugcgaaaguauauugauuaguuuuggaguacuc <<<<<<<<<..............>>>>>>>>>...<<<<<<<<<<..[((.>>>>>>>>>>.<<<<<<<<<<<......<<<<<<.>>>>>>.>>>>>..<<<<<.<....<<<<<<...<<<<<<.....<<<.<<<<.<<...<<<<<<<<<....>>>>>>>>>..<<..)).].>>.....>>......>>>>>>>....>>>>>>..>>.>>>><<...<<<<...<<<<<<<<<...>>>>>>>>>..>>>>...>>......((((...>.>>>>>.<<<<<<<.....>>>>>>>........))))..((((.<<<<<....>>>>><<<<<<<....<<<<>>>>>>>>>>....>>>>>>>.<<<<<<<<...<<<......>>>...>>>>>>>>..)).....)) (((((((((..............)))))))))...((((((((((..{{{.)))))))))).(((((((((((....(.[[[[[[))))))).)))))..(((((.(....((((((...((((((.....(((.((((.(((..(((((((((....)))))))))..((..}}.}.))....)))......)))))))....))))))..)).))))((...((((...((((((((.....))))))))..))))...))...[..[[[[...).))))).(((((((.....)))))))........]]]].]((((.(((((....)))))(((((((.....(((]]]]]]))).....))))))).((((((((...((.(....).))...))))))))..)).....)) The Tet-S1 state of G264A mutated Tetrahymena group I intron with 6nt 3'/5'-exon and 2-aminopurine nucleoside; The Tet-S1 state molecule of co-transcriptional folded G264A mutated Tetrahymena group I intron with 6nt 3'/5'-exon and 2-aminopurine nucleoside 8ifb 5 76 2.43 RF00005 URS00005AA258_562 38227611 0030533 0006412 562 gcccgganagcucagucgguagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).((((.........)))).....((.((..]....)).))))))))).... Dibekacin-bound E.coli 70S ribosome in the PURE system; A-site tRNA-Phe 8ifb 6 77 2.43 RF00005 URS00001BBAFC_562 38227611 0030533 0006412 562 cgcggggnggagcagccuggnagcucgucgggnucauaacccgaagaucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((.........)))).(((((.......))))).....(.(((.......))).)))))))..... Dibekacin-bound E.coli 70S ribosome in the PURE system; P-site tRNA-fMet 8ifc 5 76 2.9 RF00005 URS00005AA258_562 38227611 0030533 0006412 562 gcccgganagcucagucgguagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).((((.........)))).....((.((..]....)).))))))))).... Arbekacin-bound E.coli 70S ribosome in the PURE system; A-site tRNA-Phe 8ifc 6 77 2.9 RF00005 URS00001BBAFC_562 38227611 0030533 0006412 562 cgcggggnggagcagccuggnagcucgucgggnucauaacccgaagaucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(.(((..]....))).)))))))..... Arbekacin-bound E.coli 70S ribosome in the PURE system; P-site tRNAf-Met 8iss E 80 3.19 RF00005 URS00006314D1_9606 37770519 0030533 0006412 9606 ggcucuguggcgcaauggauagcgcauuggacuucuagagagcaauucaaagguuguggguucgaaucccaccagagucg <<<<<<<..<<<<........>>>>.<<<<.<<<.....>>>....>>>>.....<<<<<.......>>>>>>>>>>>>. (((((((..((((....[...)))).((((((((.....)))...))))).....(((((..]....)))))))))))). Cryo-EM structure of wild-type human tRNA Splicing Endonuclease Complex bound to pre-tRNA-ARG at 3.19 A resolution; RNA (88-MER) 8ja0 B 115 3.52 RF01344 URS0002681459_487 0006952 487 uaacuuuacguuguagcucccuuucucgaaagagaaccguugcuacaauaaggccgucugaaaagaugugccgcaacgcucugccccuuaaagcucgcuuuaaggggcaucguuu .........<<<<<<<<..<...<<<<....>>>>...>..>>>>>>>>..<<<<<<<......>>>>.>>>..<<<<...<<<<<<<<<<<<....>>>>>>>>>>>>.>>>>. ..........(((((((..(..(((((....)))))..)..)))))))...((((((((...).)))).)))..((((...((((((((((((....)))))))))))).)))). Cryo-EM structure of the NmeCas9-sgRNA-AcrIIC4 ternary complex; RNA (117-MER) 8k0p A 542 2.99 RF00029 38301022 0000373 150248 gugcgcucggcaugggugcaaucucuagggugaaagucccgaacugcgaaggcagaaguagcaguuagcuuaacgcaaggguguccguggugacgcggaaucugaaggaagcgggcggcaaacuuccggucugaggaacacgaacuucauauaaggcuagguaucauuggaugaguuugcaagacaaaacaaaguccuuucugccgaaggugauacagaguaaaugaagcagauagauggaaggaaagauuguacucuuacccgaggaggucugauggauacgugaagugcgcuucauaaccuacuuagugauaaguaacugaaccaucagaagucagcagaggucauaguacgaaucggucuagaacgauucggaaggacugaacaaucaagagaaaauagcgaaaggaaacggugaaucccgugggaaucgcuauuuacggaaggaagcuugcgucauuaucuugauugaaccgccguauacggaaccguacguacgguggugugagaggacggagguuaaucaccuccuccuacucgau .....<<<<<...<<<<<<<<<<<...<<<.......>>>..(((((...<<<<<<<...)))))..<<<...<<<..<<<<..<<<<<....>>>>>.>>>>.......>>>...>>>...[[[[[[[[[[[...........[[[[[......[[[..(((((((.<<<<..<<<<........>>>>...>>>>.>>>>>>>....)))))))..]]]...]]]]]]]]]]...]]]]]]...>>>>>>>>>>>....>>>>>...<<<<<<<<<.....<<<<<<..>>>>>>.....<<<<<<....>>>>>>......>>>>>>>>..>.......<<<<......<<<<<<<........>>>>>>>....>>>>...<<<<<<<<<..<<<<<<..<......<<<<......>>>>.....>..>>>>>><<<.<<<....>>>.>>>.....>>>>>>>>>.<<<<<<<<<<<<<....>>>..>>>>>>>>>>..<<<<<<<.<<<<<<.....>>>>>>>>>>.>>>... ..[<.((((({..(((((((((((...(((.......)))..(((((...[[[[[[[...)))))..(((...(((..((((..(((((....))))).))))...>}..)))...)))...(((((((((((.(.....)...(((((.....[(((..((((((((((((..((((.]......))))...)))).]]]]]]].{.))))))))..)))...))))))))))...))))))...)))))))))))...])))))(...((((((((.......(((....))).......((((.(....).))))......))))))))...)(.....((((.(....(((((((........)))))))...)))))...(((((((((..(((((((((......((((....}.)))).....)))))))))(((.(((....))).))).....))))))))).(((((((((((((....)))..))))))))))..(((((((.((((((.....)))))))))).)))..) The Anoxybacillus pushchinoensis ORF-less Group IIC Intron HYER1 at symmetric apo state; RNA (542-MER) 8k0p C 542 2.99 RF00029 38301022 0000373 150248 gugcgcucggcaugggugcaaucucuagggugaaagucccgaacugcgaaggcagaaguagcaguuagcuuaacgcaaggguguccguggugacgcggaaucugaaggaagcgggcggcaaacuuccggucugaggaacacgaacuucauauaaggcuagguaucauuggaugaguuugcaagacaaaacaaaguccuuucugccgaaggugauacagaguaaaugaagcagauagauggaaggaaagauuguacucuuacccgaggaggucugauggauacgugaagugcgcuucauaaccuacuuagugauaaguaacugaaccaucagaagucagcagaggucauaguacgaaucggucuagaacgauucggaaggacugaacaaucaagagaaaauagcgaaaggaaacggugaaucccgugggaaucgcuauuuacggaaggaagcuugcgucauuaucuugauugaaccgccguauacggaaccguacguacgguggugugagaggacggagguuaaucaccuccuccuacucgau .....<<<<<...<<<<<<<<<<<...<<<.......>>>..(((((...<<<<<<<...)))))..<<<...<<<..<<<<..<<<<<....>>>>>.>>>>.......>>>...>>>...[[[[[[[[[[[...........[[[[[......[[[..(((((((.<<<<..<<<<........>>>>...>>>>.>>>>>>>....)))))))..]]]...]]]]]]]]]]...]]]]]]...>>>>>>>>>>>....>>>>>...<<<<<<<<<.....<<<<<<..>>>>>>.....<<<<<<....>>>>>>......>>>>>>>>..>.......<<<<......<<<<<<<........>>>>>>>....>>>>...<<<<<<<<<..<<<<<<..<......<<<<......>>>>.....>..>>>>>><<<.<<<....>>>.>>>.....>>>>>>>>>.<<<<<<<<<<<<<....>>>..>>>>>>>>>>..<<<<<<<.<<<<<<.....>>>>>>>>>>.>>>... ..[<.((((({..(((((((((((...(((.......)))..(((((...[[[[[[[...)))))..(((...(((..((((..(((((....))))).))))...>}..)))...)))...(((((((((((.(.....)...(((((.....[(((..((((((((((((..((((.]......))))...)))).]]]]]]].{.))))))))..)))...))))))))))...))))))...)))))))))))...])))))(...((((((((.......(((....))).......((((.(....).))))......))))))))...)(.....((((.(....(((((((........)))))))...)))))...(((((((((..(((((((((......((((....}.)))).....)))))))))(((.(((....))).))).....))))))))).(((((((((((((....)))..))))))))))..(((((((.((((((.....)))))))))).)))..) The Anoxybacillus pushchinoensis ORF-less Group IIC Intron HYER1 at symmetric apo state; RNA (542-MER) 8k0q A 542 3.14 RF00029 38301022 0000373 150248 gugcgcucggcaugggugcaaucucuagggugaaagucccgaacugcgaaggcagaaguagcaguuagcuuaacgcaaggguguccguggugacgcggaaucugaaggaagcgggcggcaaacuuccggucugaggaacacgaacuucauauaaggcuagguaucauuggaugaguuugcaagacaaaacaaaguccuuucugccgaaggugauacagaguaaaugaagcagauagauggaaggaaagauuguacucuuacccgaggaggucugauggauacgugaagugcgcuucauaaccuacuuagugauaaguaacugaaccaucagaagucagcagaggucauaguacgaaucggucuagaacgauucggaaggacugaacaaucaagagaaaauagcgaaaggaaacggugaaucccgugggaaucgcuauuuacggaaggaagcuugcgucauuaucuugauugaaccgccguauacggaaccguacguacgguggugugagaggacggagguuaaucaccuccuccuacucgau .....<<<<<...<<<<<<<<<<<...<<<.......>>>..(((((...<<<<<<<...)))))..<<<...<<<..<<<<..<<<<<....>>>>>.>>>>.......>>>...>>>...[[[[[[[[[[[...........[[[[[......[[[..(((((((.<<<<..<<<<........>>>>...>>>>.>>>>>>>....)))))))..]]]...]]]]]]]]]]...]]]]]]...>>>>>>>>>>>....>>>>>...<<<<<<<<<.....<<<<<<..>>>>>>.....<<<<<<....>>>>>>......>>>>>>>>..>.......<<<<......<<<<<<<........>>>>>>>....>>>>...<<<<<<<<<..<<<<<<..<......<<<<......>>>>.....>..>>>>>><<<.<<<....>>>.>>>.....>>>>>>>>>.<<<<<<<<<<<<<....>>>..>>>>>>>>>>..<<<<<<<.<<<<<<.....>>>>>>>>>>.>>>... ..[<.((((({..(((((((((((...(((.......)))..(((((...[[[[[[[...)))))..(((...(((..((((..(((((....))))).))))...>}..)))...)))...(((((((((((.(.....)...(((((.....[(((..((((((((((((..((((.]......))))...)))).]]]]]]].{.))))))))..)))...))))))))))...))))))...)))))))))))...])))))(...((((((((.......(((....))).......((((.(....).))))......))))))))...)(.....((((.(....(((((((........)))))))...)))))...(((((((((..(((((((((......((((....}.)))).....)))))))))(((.(((....))).))).....))))))))).(((((((((((((....)))..))))))))))..(((((((.((((((.....)))))))))).)))..) The Anoxybacillus pushchinoensis ORF-less Group IIC Intron HYER1 at symmetric pre-cleavage state; RNA (542-MER) 8k0q C 542 3.14 RF00029 38301022 0000373 150248 gugcgcucggcaugggugcaaucucuagggugaaagucccgaacugcgaaggcagaaguagcaguuagcuuaacgcaaggguguccguggugacgcggaaucugaaggaagcgggcggcaaacuuccggucugaggaacacgaacuucauauaaggcuagguaucauuggaugaguuugcaagacaaaacaaaguccuuucugccgaaggugauacagaguaaaugaagcagauagauggaaggaaagauuguacucuuacccgaggaggucugauggauacgugaagugcgcuucauaaccuacuuagugauaaguaacugaaccaucagaagucagcagaggucauaguacgaaucggucuagaacgauucggaaggacugaacaaucaagagaaaauagcgaaaggaaacggugaaucccgugggaaucgcuauuuacggaaggaagcuugcgucauuaucuugauugaaccgccguauacggaaccguacguacgguggugugagaggacggagguuaaucaccuccuccuacucgau .....<<<<<...<<<<<<<<<<<...<<<.......>>>..(((((...<<<<<<<...)))))..<<<...<<<..<<<<..<<<<<....>>>>>.>>>>.......>>>...>>>...[[[[[[[[[[[...........[[[[[......[[[..(((((((.<<<<..<<<<........>>>>...>>>>.>>>>>>>....)))))))..]]]...]]]]]]]]]]...]]]]]]...>>>>>>>>>>>....>>>>>...<<<<<<<<<.....<<<<<<..>>>>>>.....<<<<<<....>>>>>>......>>>>>>>>..>.......<<<<......<<<<<<<........>>>>>>>....>>>>...<<<<<<<<<..<<<<<<..<......<<<<......>>>>.....>..>>>>>><<<.<<<....>>>.>>>.....>>>>>>>>>.<<<<<<<<<<<<<....>>>..>>>>>>>>>>..<<<<<<<.<<<<<<.....>>>>>>>>>>.>>>... ..[<.((((({..(((((((((((...(((.......)))..(((((...[[[[[[[...)))))..(((...(((..((((..(((((....))))).))))...>}..)))...)))...(((((((((((.(.....)...(((((.....[(((..((((((((((((..((((.]......))))...)))).]]]]]]].{.))))))))..)))...))))))))))...))))))...)))))))))))...])))))(...((((((((.......(((....))).......((((.(....).))))......))))))))...)(.....((((.(....(((((((........)))))))...)))))...(((((((((..(((((((((......((((....}.)))).....)))))))))(((.(((....))).))).....))))))))).(((((((((((((....)))..))))))))))..(((((((.((((((.....)))))))))).)))..) The Anoxybacillus pushchinoensis ORF-less Group IIC Intron HYER1 at symmetric pre-cleavage state; RNA (542-MER) 8k0r A 542 2.65 RF00029 38301022 0000373 150248 gugcgcucggcaugggugcaaucucuagggugaaagucccgaacugcgaaggcagaaguagcaguuagcuuaacgcaaggguguccguggugacgcggaaucugaaggaagcgggcggcaaacuuccggucugaggaacacgaacuucauauaaggcuagguaucauuggaugaguuugcaagacaaaacaaaguccuuucugccgaaggugauacagaguaaaugaagcagauagauggaaggaaagauuguacucuuacccgaggaggucugauggauacgugaagugcgcuucauaaccuacuuagugauaaguaacugaaccaucagaagucagcagaggucauaguacgaaucggucuagaacgauucggaaggacugaacaaucaagagaaaauagcgaaaggaaacggugaaucccgugggaaucgcuauuuacggaaggaagcuugcgucauuaucuugauugaaccgccguauacggaaccguacguacgguggugugagaggacggagguuaaucaccuccuccuacucgau .....<<<<<...<<<<<<<<<<<...<<<.......>>>..(((((...<<<<<<<...)))))..<<<...<<<..<<<<..<<<<<....>>>>>.>>>>.......>>>...>>>...[[[[[[[[[[[...........[[[[[......[[[..(((((((.<<<<..<<<<........>>>>...>>>>.>>>>>>>....)))))))..]]]...]]]]]]]]]]...]]]]]]...>>>>>>>>>>>....>>>>>...<<<<<<<<<......<<<<....>>>>......<<<<<<....>>>>>>......>>>>>>>>..>.......<<<<......<<<<<<<........>>>>>>>....>>>>...<<<<<<<<<..<<<<<<..<......<<<<......>>>>.....>..>>>>>><<<.<<<....>>>.>>>.....>>>>>>>>>.<<<<<<<<<<<<<....>>>..>>>>>>>>>>..<<<<<<<.<<<<<<.....>>>>>>>>>>.>>>... ..[<.((((({..(((((((((((...(((.......)))..(((((...[[[[[[[...)))))..(((...(((...(((..(((((....))))).)))....>}..)))...)))...(((((((((((.(.....)...(((((.....[(((..((((((((((((..((((.]......))))...)))).]]]]]]].{.))))))))..)))...))))))))))...))))))...)))))))))))...])))))(...((((((((......((((....))))......((((.(....).))))......))))))))...)(.....((((.(....(((((((........)))))))...)))))...(((((((((..(((((((((......((((....}.)))).....)))))))))(((.(((....))).))).....))))))))).(((((((((((((....)))..))))))))))..(((((((.((((((.....)))))))))).)))..) The Anoxybacillus pushchinoensis ORF-less Group IIC Intron HYER1 at symmetric post cleavge state; RNA (542-MER) 8k0r C 542 2.65 RF00029 38301022 0000373 150248 gugcgcucggcaugggugcaaucucuagggugaaagucccgaacugcgaaggcagaaguagcaguuagcuuaacgcaaggguguccguggugacgcggaaucugaaggaagcgggcggcaaacuuccggucugaggaacacgaacuucauauaaggcuagguaucauuggaugaguuugcaagacaaaacaaaguccuuucugccgaaggugauacagaguaaaugaagcagauagauggaaggaaagauuguacucuuacccgaggaggucugauggauacgugaagugcgcuucauaaccuacuuagugauaaguaacugaaccaucagaagucagcagaggucauaguacgaaucggucuagaacgauucggaaggacugaacaaucaagagaaaauagcgaaaggaaacggugaaucccgugggaaucgcuauuuacggaaggaagcuugcgucauuaucuugauugaaccgccguauacggaaccguacguacgguggugugagaggacggagguuaaucaccuccuccuacucgau .....<<<<<...<<<<<<<<<<<...<<<.......>>>..(((((...<<<<<<<...)))))..<<<...<<<..<<<<..<<<<<....>>>>>.>>>>.......>>>...>>>...[[[[[[[[[[[...........[[[[[......[[[..(((((((.<<<<..<<<<........>>>>...>>>>.>>>>>>>....)))))))..]]]...]]]]]]]]]]...]]]]]]...>>>>>>>>>>>....>>>>>...<<<<<<<<<......<<<<....>>>>......<<<<<<....>>>>>>......>>>>>>>>..>.......<<<<......<<<<<<<........>>>>>>>....>>>>...<<<<<<<<<..<<<<<<..<......<<<<......>>>>.....>..>>>>>><<<.<<<....>>>.>>>.....>>>>>>>>>.<<<<<<<<<<<<<....>>>..>>>>>>>>>>..<<<<<<<.<<<<<<.....>>>>>>>>>>.>>>... ..[<.((((({..(((((((((((...(((.......)))..(((((...[[[[[[[...)))))..(((...(((...(((..(((((....))))).)))....>}..)))...)))...(((((((((((.(.....)...(((((.....[(((..((((((((((((..((((.]......))))...)))).]]]]]]].{.))))))))..)))...))))))))))...))))))...)))))))))))...])))))(...((((((((......((((....))))......((((.(....).))))......))))))))...)(.....((((.(....(((((((........)))))))...)))))...(((((((((..(((((((((......((((....}.)))).....)))))))))(((.(((....))).))).....))))))))).(((((((((((((....)))..))))))))))..(((((((.((((((.....)))))))))).)))..) The Anoxybacillus pushchinoensis ORF-less Group IIC Intron HYER1 at symmetric post cleavge state; RNA (542-MER) 8k0s A 543 3.41 RF00029 38301022 0000373 150248 gugcgcucggcaugggugcaaucucuagggugaaagucccgaacugcgaaggcagaaguagcaguuagcuuaacgcaaggguguccguggugacgcggaaucugaaggaagcgggcggcaaacuuccggucugaggaacacgaacuucauauaaggcuagguaucauuggaugaguuugcuaagacaaaacaaaguccuuucugccgaaggugauacagaguaaaugaagcagauagauggaaggaaagauuguacucuuacccgaggaggucugauggauacgugaagugcgcuucauaaccuacuuagugauaaguaacugaaccaucagaagucagcagaggucauaguacgaaucggucuagaacgauucggaaggacugaacaaucaagagaaaauagcgaaaggaaacggugaaucccgugggaaucgcuauuuacggaaggaagcuugcgucauuaucuugauugaaccgccguauacggaaccguacguacgguggugugagaggacggagguuaaucaccuccuccuacucgau .....<<<<<...<<<<<<<<<<<...<<<.......>>>..(((((...<<<<<<<...)))))..<<<...<<<..<<<<..<<<<<....>>>>>.>>>>.......>>>...>>>...[[[[[[[[[[[...........[[[[[......[[[..(((((((.<<<<..<<<<.........>>>>...>>>>.>>>>>>>....)))))))..]]]...]]]]]]]]]]...]]]]]]...>>>>>>>>>>>....>>>>>...<<<<<<<<<.....<<<<<<..>>>>>>.....<<<<<<....>>>>>>......>>>>>>>>..>.......<<<<......<<<<<<<........>>>>>>>....>>>>...<<<<<<<<<..<<<<<<..<......<<<<......>>>>.....>..>>>>>><<<.<<<....>>>.>>>.....>>>>>>>>>.<<<<<<<<<<<<<....>>>..>>>>>>>>>>..<<<<<<<.<<<<<<.....>>>>>>>>>>.>>>... ..[<.((((({..(((((((((((...(((.......)))..(((((...[[[[[[[...)))))..(((...(((..((((..(((((....))))).))))...>}..)))...)))...(((((((((((.(.....)...(((((......(((..((((((((((((..((((.........))))...)))).]]]]]]].{.))))))))..)))...))))))))))...))))))...)))))))))))...])))))(...((((((((.......(((....))).......((((.(....).))))......))))))))...)(.....((((.(....(((((((........)))))))...)))))...(((((((((..(((((((((......((((....}.)))).....)))))))))(((.(((....))).))).....))))))))).(((((((((((((....)))..))))))))))..(((((((.((((((.....)))))))))).)))..) The Anoxybacillus pushchinoensis ORF-less Group IIC Intron HYER1 with 10-nt TRS at symmetric apo state; RNA (543-MER) 8k0s C 543 3.41 RF00029 38301022 0000373 150248 gugcgcucggcaugggugcaaucucuagggugaaagucccgaacugcgaaggcagaaguagcaguuagcuuaacgcaaggguguccguggugacgcggaaucugaaggaagcgggcggcaaacuuccggucugaggaacacgaacuucauauaaggcuagguaucauuggaugaguuugcuaagacaaaacaaaguccuuucugccgaaggugauacagaguaaaugaagcagauagauggaaggaaagauuguacucuuacccgaggaggucugauggauacgugaagugcgcuucauaaccuacuuagugauaaguaacugaaccaucagaagucagcagaggucauaguacgaaucggucuagaacgauucggaaggacugaacaaucaagagaaaauagcgaaaggaaacggugaaucccgugggaaucgcuauuuacggaaggaagcuugcgucauuaucuugauugaaccgccguauacggaaccguacguacgguggugugagaggacggagguuaaucaccuccuccuacucgau .....<<<<<...<<<<<<<<<<<...<<<.......>>>..(((((...<<<<<<<...)))))..<<<...<<<..<<<<..<<<<<....>>>>>.>>>>.......>>>...>>>...[[[[[[[[[[[...........[[[[[......[[[..(((((((.<<<<..<<<<.........>>>>...>>>>.>>>>>>>....)))))))..]]]...]]]]]]]]]]...]]]]]]...>>>>>>>>>>>....>>>>>...<<<<<<<<<.....<<<<<<..>>>>>>.....<<<<<<....>>>>>>......>>>>>>>>..>.......<<<<......<<<<<<<........>>>>>>>....>>>>...<<<<<<<<<..<<<<<<..<......<<<<......>>>>.....>..>>>>>><<<.<<<....>>>.>>>.....>>>>>>>>>.<<<<<<<<<<<<<....>>>..>>>>>>>>>>..<<<<<<<.<<<<<<.....>>>>>>>>>>.>>>... ..[<.((((({..(((((((((((...(((.......)))..(((((...[[[[[[[...)))))..(((...(((..((((..(((((....))))).))))...>}..)))...)))...(((((((((((.(.....)...(((((......(((..((((((((((((..((((.........))))...)))).]]]]]]].{.))))))))..)))...))))))))))...))))))...)))))))))))...])))))(...((((((((.......(((....))).......((((.(....).))))......))))))))...)(.....((((.(....(((((((........)))))))...)))))...(((((((((..(((((((((......((((....}.)))).....)))))))))(((.(((....))).))).....))))))))).(((((((((((((....)))..))))))))))..(((((((.((((((.....)))))))))).)))..) The Anoxybacillus pushchinoensis ORF-less Group IIC Intron HYER1 with 10-nt TRS at symmetric apo state; RNA (543-MER) 8k15 C 470 2.58 RF00029 38301022 0000373 1579424 guacgacgggcaugucguacaucugaggugcaaguccucuguggacaccugcuaccggugaacccaauagcgacucccaagccugacuaucgcgagguaacggggagaggaagggauagcgaaaucguggcucuacgaacagaaacgugauauuaaggcguauauaguggaugagggggcuaggcacucuaaaguccaaaaagguagucguaaucuaugugcguaaaucacgagaguaaacgaggaaagauguacgacuuaucccgugaggucucaugagcgucaguagacguaguaauaacgaaucaugagaagucagccgaggucauaguagugaugaaguuucuguaauggaaacggagcgaaggaccgaacgauuaaacagaacguaugcuguuuaguugaaccgccgugugccgaacggcacgcacgguggugugagagggacuaucaauuagucccuacucgau .....<<<<<...<<<<<<<<<<<<<<<.......>>>>.<.<<.<<<<.((((((>>>>..>>>....<<...<<<<...<<<<..<<<<....>>>>.>>>>........>>>>..>>....<<<<.<<<<<...........<<<<<.......<<<<<<<<<<.<<<<..<<<<........>>>>...>>>>.....))))))(.....>>>>>>>>>>...>>>>>>>>>>..>>>>....>>>>>>>>>>>....>>>>>..<.<<<<<<<<<<<<<....>>>>>.<......>...>>>>>>>>..>....<..<<<<......<<......<<<<<<.....>>>>>>...>>....>>>>>..<<<<<<<..<<...)....>>..>>>>>>>.<<<<<<<<<<<<<....>>>..>>>>>>>>>>..<<<<<<<<<<<.....>>>>>>>>.>>>... ..{<.((((({..((((((((((((.((.......)).).(.((.((((..[[[[[))))..)))....((...((((...(((...((((....))))..)))....>}..))))..))....((((.(((((.(.....)...(((((......[((((.(((((.((((..((((.]......))))...)))).....]]]]].[[....))))).))))...))))))))))..))))....)))))))))))...})))))(...(((((((((((((....))))).((....))...))))))))...)(.....((((.(....((......((((((.....))))))...))...)))))...((((((((((...]].....)))))))))).(((((((((((((....)))..))))))))))..(((((((((((.....)))))))).)))..) The Streptococcus azizii ORF-less Group IIC intron HYER2 at apo state; RNA (470-MER) 8k82 C5 75 3.0 RF00005 URS00002CB170_559292 38942792 0030533 0006412 4932 agcgccgunncgcagnggaagcgcncagggcucaunacccugaunnncucggaucgnaaccgagcggcgcuacca <<<<<<<..<<<<.......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((....[..)))).(((((.......))))).....(((((..]....)))))))))))).... Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA; tRNA 8ogj 10 14 3.1 RF00005 URS0000D22C51_237561 0030533 0006412 5476 ggcagcugcuacca <<<<..>>>>.... .(((())))..... Structure of Candida albicans 80S ribosome in complex with mefloquine; Mixture of endogenous E-tRNAs 8oin B9 73 3.6 URS0000D77942_9823 37141370 0030533 0006412 9823 guuaauguagcuuaaauuaucaaagcaaggcacugaanaugccuagaugagccucacagcuccauaaacacca <<<.<<<..<<<...........>>>.<<<<<.......>>>>>....<<<<......>>>>>>>.>>>.... (((.(((..(((...........))).(((((.......)))))....((((......))))))).))).... 55S mammalian mitochondrial ribosome with mtRF1 and P-site tRNA; CP Phe-tRNA 8oiq B9 73 3.5 URS0000D77942_9823 37141370 0030533 0006412 9823 guuaauguagcuuaaauuaucaaagcaaggcacugaanaugccuagaugagccucacagcuccauaaacacca <<<.<<<..<<<...........>>>.<<<<<.......>>>>>....<<<<......>>>>>>>.>>>.... (((.(((..(((...........))).(((((.......)))))....((((......))))))).))).... 39S mammalian mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA; CP Phe-tRNA 8ols A 390 3.0 RF02001,RF01998 URS000080DF32_182710 38898052 0000373 182710 ugugcccggcaugggugcagucuauagggugagagucccgaacugugaaggcagaaguaacaguuagccuaacgcaaggguguccguggcgacauggaaucugaaggaagcggacggcaaaccuucggucugaggaacacgaacuucauaugaggcuagguaucaauggaugaguuugcauaacaaaacaaaguccuuucugccaaaguugguacagaguaaaugaagcagauugaugaagggaaagacugcauucuuacccggggaggucuggaaacagaagucagcagaagucauaguacccuguucgcaggggaaggacggaacaaguauggcguucgcgccuaagcuugaaccgccguauaccgaacgguacguacgguggugugg ....<<<<<...<<<<<<<<<<<...<<<.......>>>..<<<<<...(((((((...>>>>>..<<<...<<<..<<<<.<<<<<<....>>>>>>>>>>.......>>>...>>>...<<<<<<<<<<<...........<<<<<......<<<..<<<<<<<<<<<<..<<<<........>>>>...>>>>.)))))))...>>>>>>>>..>>>...>>>>>>>>>>...>>>>>>...>>>>>>>>>>>....>>>>>....<<<<....>>>>...........<<<......<<<<<....>>>>>....>>>....<<<<<..<<<<....>>>>...>>>>>.<<<<<<<<<<<<<....>>>..>>>>>>>>>>.... .[<.((((({..(((((((((((...(((.......)))..(((((...[[[[[[[...)))))..(((...(((..((((.((((((....))))))))))...>}..)))...)))...(((((((((((.(.....)...(((((.....[((.....(.((((((((..((((.]......))))...)))).]]]]]]]...)))).).....))...))))))))))...))))))...)))))))))))...])))))(...((((....))))...).......(((.(....(((.(....).)))...))))....(((((..((((....))))...))))).(((((((((((((....)))..)))))))))).... Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Mg2+ and intronistat B; Group IIC intron 8olv A 394 2.81 RF02001,RF01998 URS000080DF32_182710 38898052 0000373 182710 ggggugugcccggcaugggugcagucuauagggugagagucccgaacugugaaggcagaaguaacaguuagccuaacgcaaggguguccguggcgacauggaaucugaaggaagcggacggcaaaccuucggucugaggaacacgaacuucauaugaggcuagguaucaauggaugaguuugcauaacaaaacaaaguccuuucugccaaaguugguacagaguaaaugaagcagauugaugaagggaaagacugcauucuuacccggggaggucuggaaacagaagucagcagaagucauaguacccuguucgcaggggaaggacggaacaaguauggcguucgcgccuaagcuugaaccgccguauaccgaacgguacguacgguggugugg ........<<<<<...<<<<<<<<<<<...<<<.......>>>..(((((...<<<<<<<...)))))..<<<...<<<..<<<<.<<<<<<....>>>>>>>>>>.......>>>...>>>...[[[[[[[[[[[...........[[[[[......[[[...(((((((<<<<..<<<<........>>>>...>>>>.>>>>>>>...)))))))...]]]...]]]]]]]]]]...]]]]]]...>>>>>>>>>>>....>>>>>....<<<<....>>>>...........<<<......<<<<......>>>>....>>>....<<<<<..<<<<....>>>>...>>>>>.<<<<<<<<<<<<<....>>>..>>>>>>>>>>.... .....[<.((((({..(((((((((((...(((.......)))..(((((...[[[[[[[...)))))..(((...(((..((((.((((((....))))))))))...>}..)))...)))...(((((((((((.(.....)...(((((......(((...(((((((((((..((((........))))...)))).]]]]]]]...)))))))...)))...))))))))))...))))))...)))))))))))...])))))(...((((....))))...).......(((.(....(((........)))...))))....(((((..((((....))))...))))).(((((((((((((....)))..)))))))))).... Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Mg2+ and ARN25850; Group IIC intron 8olw A 396 4.0 RF02001,RF01998 URS000080E361_182710 38898052 0000373 182710 guuaugugugcccggcaugggugcagucuauagggugagagucccgaacugugaaggcagaaguaacaguuagccuaacgcaaggguguccguggcgacauggaaucugaaggaagcggacggcaaaccuucggucugaggaacacgaacuucauaugaggcuagguaucaauggaugaguuugcauaacaaaacaaaguccuuucugccaaaguugguacagaguaaaugaagcagauugaugaagggaaagacugcauucuuacccggggaggucuggaaacagaagucagcagaagucauaguacccuguucgcaggggaaggacggaacaaguauggcguucgcgccuaagcuugaaccgccguauaccgaacgguacguacgguggugugg [[[[[.....<<<<<...<<<<<<<<<<<...<<<.......>>>..<<<<<...(((((((...>>>>>..<<<...<<<..<<<<.<<<<<<....>>>>>>>>>>.......>>>...>>>...<<<<<<<<<<<...........<<<<<......<<<..<<<<<<<<<<<<..<<<<..]]]]].>>>>...>>>>.)))))))...>>>>>>>>..>>>...>>>>>>>>>>...>>>>>>...>>>>>>>>>>>....>>>>>..<.<<<<....>>>>..>........<<<......<<<<......>>>>....>>>....<<<<<..<<<<....>>>>...>>>>>.<<<<<<<<<<<<<....>>>..>>>>>>>>>>.... .{{{{..[<.((((({..(((((((((((...(((.......)))..((((....[[[[[[[....))))..(((...(((..((((.((((((....))))))))))...>}..)))...)))...(((((.(((((.(.....)...((((......[(((..(.((((((((((..((((.]}}}}..))))...)))).]]]]]]]...)))))).)..)))....)))))))))....)))))...)))))))))))...])))))(...((((....))))...).......(((.(....(((........)))...))))....(((((..((((....))))...))))).(((((((((((((....)))..)))))))))).... Structure of Oceanobacillus iheyensis group II intron before the first step of splicing in the presence of K+, Ca2+ and intronistat B; Group IIC intron 8oly A 390 3.11 RF02001,RF01998 URS000080E176_182710 38898052 0000373 182710 gugugcccggcaugggugcagucuauagggugagagucccgaacugugaaggcagaaguaacaguuagccuaacgcaaggguguccguggcgacauggaaucugaaggaagcggacggcaaaccuucggucugaggaacacgaacuucauaugaggcuagguaucaauggaugaguuugcauaacaaaacaaaguccuuucugccaaaguugguacagaguaaaugaagcagauugaugaagggaaagacugcauucuuacccggggaggucuggaaacagaagucagcagaagucauaguacccuguucgcaggggaaggacggaacaaguauggcguucgcgccuaagcuugaaccgccguauaccgaacgguacguacgguggugug .....<<<<<...<<<<<<<<<<<...<<<.......>>>..<<<<<...(((((((...>>>>>..<<<...<<<..<<<<.<<<<<<....>>>>>>>>>>.......>>>...>>>...<<<<<<<<<<<...........<<<<<......<<<..<<<<<<<<<<<<..<<<<........>>>>...>>>>.)))))))...>>>>>>>>..>>>...>>>>>>>>>>...>>>>>>...>>>>>>>>>>>....>>>>>....<<<<....>>>>...........<<<......<<<<<....>>>>>....>>>....<<<<<..<<<<....>>>>...>>>>>.<<<<<<<<<<<<<....>>>..>>>>>>>>>>... ..[<.((((({..(((((((((((...(((.......)))..(((((...[[[[[[[...)))))..(((...(((..((((.((((((....))))))))))...>}..)))...)))...(((((((((((.(.....)...(((((.....[(((..((((((((((((..((((.]......))))...)))).]]]]]]]...))))))))..)))...))))))))))...))))))...)))))))))))...])))))(...((((....))))...).......(((.(....(((........)))...))))....(((((..((((....))))...))))).(((((((((((((....)))..))))))))))... Structure of Oceanobacillus iheyensis group II intron post first step of splicing in the presence of K+, Mg2+ and intronistat B; Group IIC intron 8olz A 390 3.31 RF02001,RF01998 URS000080DF32_182710 38898052 0000373 182710 ugugcccggcaugggugcagucuauagggugagagucccgaacugugaaggcagaaguaacaguuagccuaacgcaaggguguccguggcgacauggaaucugaaggaagcggacggcaaaccuucggucugaggaacacgaacuucauaugaggcuagguaucaauggaugaguuugcauaacaaaacaaaguccuuucugccaaaguugguacagaguaaaugaagcagauugaugaagggaaagacugcauucuuacccggggaggucuggaaacagaagucagcagaagucauaguacccuguucgcaggggaaggacggaacaaguauggcguucgcgccuaagcuugaaccgccguauaccgaacgguacguacgguggugugg ....<<<<<...<<<<<<<<<<<...<<<.......>>>..(((((...<<<<<<<...)))))..<<<...<<<..<<<<.<<<<<<....>>>>>>>>>>.......>>>...>>>...[[[[[[[[[[[...........[[[[[......[[[...(((((((<<<<..<<<<........>>>>...>>>>.>>>>>>>...)))))))...]]]...]]]]]]]]]]...]]]]]]...>>>>>>>>>>>....>>>>>....<<<<....>>>>...........<<<......<<<<<....>>>>>....>>>....<<<<<..<<<<....>>>>...>>>>>.<<<<<<<<<<<<<....>>>..>>>>>>>>>>.... .[<.((((({..(((((((((((...(((.......)))..((((....[[[[[[[....))))..(((...(((..((((.((((((....))))))))))...>}..)))...)))...(((((((((((.(.....)...(((((......(((...(((.(((((((..((((........))))...)))).]]]]]]]...))).)))...)))...))))))))))...))))))...)))))))))))...])))))(...((((....))))...).......(.(.(....(((.(....).)))...)).)....(((((..((((....))))...))))).(((((((((((((....)))..)))))))))).... Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Mg2+, 5'-exon, and intronistat B after 2h30 soaking; DOMAINS 1-5 8om0 A 390 3.61 RF02001,RF01998 URS000080DF32_182710 38898052 0000373 182710 ugugcccggcaugggugcagucuauagggugagagucccgaacugugaaggcagaaguaacaguuagccuaacgcaaggguguccguggcgacauggaaucugaaggaagcggacggcaaaccuucggucugaggaacacgaacuucauaugaggcuagguaucaauggaugaguuugcauaacaaaacaaaguccuuucugccaaaguugguacagaguaaaugaagcagauugaugaagggaaagacugcauucuuacccggggaggucuggaaacagaagucagcagaagucauaguacccuguucgcaggggaaggacggaacaaguauggcguucgcgccuaagcuugaaccgccguauaccgaacgguacguacgguggugugg ....<<<<<...<<<<<<<<<<<...<<<.......>>>..<<<<<...(((((((...>>>>>..<<<...<<<..<<<<.<<<<<<....>>>>>>>>>>.......>>>...>>>...<<<<<<<<<<<...........<<<<<......<<<..<<<<<<<<<<<<..<<<<........>>>>...>>>>.)))))))...>>>>>>>>..>>>...>>>>>>>>>>...>>>>>>...>>>>>>>>>>>....>>>>>....<<<<....>>>>...........<<<......<<<<......>>>>....>>>....<<<<<..<<<<....>>>>...>>>>>.<<<<<<<<<<<<<....>>>..>>>>>>>>>>.... ..<.((((({..(((((((((((...(((.......)))..(((((...[[[[[[[...)))))..(((...(((..((((.((((((....))))))))))...>}..)))...)))...(((((((((((.(.....)...(((((......(((...((.((((((((..((((........))))...)))).]]]]]]]...)))).))...)))...))))))))))...))))))...)))))))))))....)))))(...((((....))))...).......(((.(....(((.(....).)))...))))....(((((..((((....))))...))))).((((((((((..(....)....)))))))))).... Structure of Oceanobacillus iheyensis group II intron in the presence of Na+, Mg2+ and intronistat B; Domains 1-5 8omr C 75 3.3 RF00005 URS0002915689_9606 38181786 0030533 0006412 9606 aggucguuaguauaguggugaguauccccgccugucacgcgggagaccgggguucgauuccccgacggccugcca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>....<<<<<.......>>>>>>>>>>>>.... (((((((..(.((....[...)).).(((((.......)))))....(((((..]....)))))))))))).... Human tRNA guanine transglycosylase (TGT) bound to tRNAAsp; tRNAAsp 8ops C 69 3.82 RF00027 39054354 0035195 0016442 9606 gguaguaauuuguacaguuugagggucuaugauaccacccgguacaggagauaacuguacaggccacug ........<<<<<<.<<<<.<..............................>>>>>.>>>>>>...... .........(((.(..(((.................................)))..).)))....... Human terminal uridylyltransferase 7 (TUT7/ZCCHC6) bound with pre-let7g miRNA and Lin28A - complex 1; RNA (71-MER) Let7g 8ost C 69 3.69 RF00027 39054354 0035195 0016442 9606 gguaguaguuuguacaguuugagggucuaugauacaacccgguacaggagauaacuguacaggccacug ..<<<<.<<.<<<<<<<<<.................................>>>>>>>>>.>>.>>>> ...(((....(((...(((.................................)))...)))....))). Structure of human terminal uridylyltransferase 4 (TUT4, ZCCHC11) in complex with pre-let7g miRNA and Lin28A; pre-let7-g 8oue B 92 2.7 RF00024 URS00004A7003_9606 38272871 2.7.7.49 0003720,0003964,0000332,0005515,0044877,0070182,0071987 0007004,0071456,2000773 0000333,0000781,0005737,0015030,0005697,0090661 9606 ccugcggcggccgcaggaagaggaacggagcgaguccccggggcgcgauucccugagcugugggacgugcacccaggacucgcucacacaug <<<<<<<<.>>>>>>>>..........<<<<<<<<<<....<<<<<<...<<<........>>>.>>>>>.>...>>>>>>>>>>....... ((((((((.))))))))..........((((((((((...(.(((((...(((........))).))))).)...))))))))))....... The H/ACA RNP lobe of human telomerase with the dyskerin thumb loop in a semi-closed conformation; Human telomerase RNA 8ouf B 86 3.1 RF00024 URS00004A7003_9606 38272871 2.7.7.49 0003720,0003964,0000332,0005515,0044877,0070182,0071987 0007004,0071456,2000773 0000333,0000781,0005737,0015030,0005697,0090661 9606 ccugcggcggccgcaggaagaggaacggagcgagucccgggcgcgucccugagcugugggacgugcccaggacucgcucacacaug <<<<<<<<.>>>>>>>>..........<<<<<<<<<<.<<<<<<<<<<<........>>>>>>>>>>>.>>>>>>>>>>....... ((((((((.))))))))..........((((((((((.(((((((((((........))))))))))).))))))))))....... The H/ACA RNP lobe of human telomerase with the dyskerin thumb loop in an open conformation; Human telomerase RNA 8oz0 y 75 3.5 RF00005 URS0000326EAC_9606 38287194 0030533 0006412 9606 agcagaguggcgcagcggaagcgugcugggcccauaacccagaggucgauggaucgaaaccauccucugcuacca <<<<<<...<<<<.......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>.>>>>>>.... .((((((...(((.......)))..(((((.......))))).....(((((.......)))))))))))..... Structure of a human 48S translation initiation complex with eIF4F and eIF4A; tRNAiMet 8p03 1 75 3.04 RF00005 URS0000326EAC_9986 38244546 0030533 0006412 9986 agcagaguggcgcagcggaagcgugcugggcccaunacccagaggucgauggaucgaaaccauccucugcuacca <<<<<<<..<<<<.......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... .((((((..((((....[..)))).(((((.......))))).....(((((..]....)))))))))))..... 48S late-stage initiation complex with m6A mRNA; initiator methionylated tRNA 8p09 1 75 3.3 RF00005 URS0000326EAC_9986 38244546 0030533 0006412 9986 agcagaguggcgcagcggaagcgugcugggcccaunacccagaggucgauggaucgaaaccauccucugcuacca <<<<<<<..<<<<.......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... .((((((..((((....[..)))).(((((.......))))).....(((((..]....)))))))))))..... 48S late-stage initiation complex with non methylated mRNA; initiator methionylated tRNA 8peg Y 76 3.3 RF00005 URS00003179F7_83333 38409277 0030533 0006412 562 ggguganuagcucagcugggagagcaccucccunacnaggaggggnucggcggnucgaucccgucaucacccacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).((((.........)))).....(((((..]....)))))))))))).... Escherichia coli paused disome complex (queueing 70S non-rotated closed PRE state); tRNA-Val (A-site) 8phj 7 76 3.67 RF00005 URS00001BBAFC_562 38033086 0030533 0006412 562 gcggggnggagcagccuggnagcucgucgggnucauaacccgaagaucgucggnucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... cA4-bound Cami1 in complex with 70S ribosome; fMet-tRNA(fMet) 8phj 8 77 3.67 RF00005 URS00001BBAFC_562 38033086 0030533 0006412 562 cgcggggnggagcagccuggnagcucgucgggnucauaacccgaagaucgucggnucaaauccggcccccgcaacca .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))..... cA4-bound Cami1 in complex with 70S ribosome; fMet-tRNA(fMet) 8ppl Iw 75 2.65 URS0000326EAC_9606 37802027 0030533 0006412 9606 agcagagunncgcagcggaagcguncugggcccaunacccagagnnngauggaucgnaaccauccucugcuacca <<<<<<<..<<<<.......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))).... MERS-CoV Nsp1 bound to the human 43S pre-initiation complex; Met-tRNAi(Met) 8pva Y 74 4.5 RF00005 URS000009F4BF_562 38011573 0030533 0006412 562 gggugauuagcucaggggagagcaccucccuuacaaggagggggucggcgguucgaucccgucaucacccacca <<<<<<<..<<<<......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..(((....[...))).(((((.......))))).....(.(((..]....))).)))))))).... Structure of bacterial ribosome determined by cryoEM at 100 keV; A-site tRNA-val 8pva Z 76 4.5 RF00005 URS00002905B5_562 38011573 0030533 0006412 562 gcgggguggagcagccugguagcucgucgggcucauaacccgaaggucgucgguucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Structure of bacterial ribosome determined by cryoEM at 100 keV; P-site tRNA-fMet 8q7n 5 115 3.1 RF00020 URS000075BAAE_9606 38383864 0000244,0000353 0005682,0046540 9606 acucugguuucucuucagaucgcauaaaucuuucgccuuuuacuaaagauuuccguggagaggaacaacucugagucuuaacccaauuuuuugaggccuugcuuuggcaaggcua .<<<...<<<<<<<<<<........<<<<<<<<...........>>>>>>>>...>>>>>>>>>>.......>>>...................<<<<<<<<....>>>>>>>>. .(((...((((((((((...((...((((((((.(.......).)))))))).)))))))))))).......)))...................((((((((....)))))))). cryo-EM structure of the human spliceosomal B complex protomer (tri-snRNP core region); U5 snRNA 8q7n 6 78 3.1 RF00026 URS000035C796_9606 38383864 0030621 0000244,0000353 0005688,0046540 9606 gugcucgcuucggcagcacauauacuaaaauuggaacgauacagagaagauuagcauggccccugcgcaaggaugaca <<<<<.<<....>>>>>>>........................................................... (((((.((....)))))))........................................................... cryo-EM structure of the human spliceosomal B complex protomer (tri-snRNP core region); U6 snRNA 8q7n 4 76 3.1 RF00015 URS0000200C70_9606 38383864 0017070 0000244,0000353 0005687,0046540 9606 agcuuugcgcaguggcaguaucguagccaaugagguuuauccgaggcgcgauuauugcuaauacuuuucccaauac ...................<<<<<.<<<.....<<.....>>..>>>>>>>>........................ ...................(((((.(((.....((.....))..))))))))........................ cryo-EM structure of the human spliceosomal B complex protomer (tri-snRNP core region); U4 snRNA 8q7q 5 104 3.2 RF00020 URS000075BAAE_9606 38467876 0000244,0000353 0005682,0046540 9606 acucugguuucucuucagaucgcauaaaucuuucgcacuaaagauuuccguggagaggaacaacucugaguccaauuuuuugaggccuugcuuuggcaaggcua <<<<.<<<<<<<<<<<<........<<<<<<<<......>>>>>>>>...>>>>>>>>>>>....>.>>>>............<<<<<<<<....>>>>>>>>. ((((.((((((((((((...((...((((((((......)))))))).)))))))))))))....).))))............((((((((....)))))))). Structure of the recycling U5 snRNP bound to chaperones CD2BP2 and TSSC4 (State 2); U5 snRNA 8q7v 5 104 3.8 RF00020 URS000075BAAE_9606 38467876 0000244,0000353 0005682,0046540 9606 acucugguuucucuucagaucgcauaaaucuuucgcacuaaagauuuccguggagaggaacaacucugaguccaauuuuuugaggccuugcuuuggcaaggcua <<<<.<<<<<<<<<<<<........<<<<<<<<......>>>>>>>>...>>>>>>>>>>>....>.>>>>............<<<<<<<<....>>>>>>>>. ((((.((((((((((((...((...((((((((......)))))))).)))))))))))))....).))))............((((((((....)))))))). Structure of the recycling U5 snRNP bound to chaperones CD2BP2 and TSSC4 (State 1); U5 snRNA 8q7w 5 104 3.9 RF00020 URS000075BAAE_9606 38467876 0000244,0000353 0005682,0046540 9606 acucugguuucucuucagaucgcauaaaucuuucgcacuaaagauuuccguggagaggaacaacucugaguccaauuuuuugaggccuugcuuuggcaaggcua <<<<.<<<<<<<<<<<<........<<<<<<<<......>>>>>>>>...>>>>>>>>>>>....>.>>>>............<<<<<<<<....>>>>>>>>. ((((.((((((((((((...((...((((((((......)))))))).)))))))))))))....).))))............((((((((....)))))))). Structure of the recycling U5 snRNP bound to chaperone CD2BP2 (State 3); U5 snRNA 8q7x 5 104 4.6 RF00020 URS000075BAAE_9606 38467876 0000244,0000353 0005682,0046540 9606 acucugguuucucuucagaucgcauaaaucuuucgcacuaaagauuuccguggagaggaacaacucugaguccaauuuuuugaggccuugcuuuggcaaggcua <<<<.<<<<<<<<<<<<........<<<<<<<<......>>>>>>>>...>>>>>>>>>>>....>.>>>>............<<<<<<<<....>>>>>>>>. ((((.((((((((((((...((...((((((((......)))))))).)))))))))))))....).))))............((((((((....)))))))). Structure of the recycling U5 snRNP bound to chaperone CD2BP2 (State 4); U5 snRNA 8q91 5 104 3.1 RF00020 URS000075BAAE_9606 38467877 0000244,0000353 0005682,0046540 9606 acucugguuucucuucagaucgcauaaaucuuucgcacuaaagauuuccguggagaggaacaacucugaguccaauuuuuugaggccuugcuuuggcaaggcua <<<<.<<<<<<<<<<<<........<<<<<<<<......>>>>>>>>...>>>>>>>>>>>....>.>>>>............<<<<<<<<....>>>>>>>>. ((((.((((((((((((...((...((((((((......)))))))).)))))))))))))....).))))............((((((((....)))))))). Structure of the human 20S U5 snRNP core; U5 snRNA 8qbt 5 77 2.2 RF00005 URS00002E063F_83333 38503735 0030533 0006412 679895 cggcgaguagcgcagcuugguagcgcaacugguuugggaccagugggucggagguucgaauccucucucgccgacca <<<<<<<..<<<<.........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))).... E. coli ApdP-stalled ribosomal complex; Pro-tRNA 8qbt 6 77 2.2 RF00005 URS00002E063F_83333 38503735 0030533 0006412 679895 cggcgaguagcgcagcuugguagcgcaacugguuugggaccagugggucggagguucgaauccucucucgccgacca <<<<<<<..<<<<.........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((......[..))))..((((.......))))......(((((..]....)))))))))))).... E. coli ApdP-stalled ribosomal complex; Pro-tRNA 8qbt 7 76 2.2 RF00005 URS00005F0912_562 38503735 0030533 0006412 679895 ggggcuauagcucagcugggagagcgccugcuuugcacgcaggaggucugcgguucgaucccgcauagcuccacca .<<<<<...<<<<........>>>>.<<<<<.......>>>>>.....<<.<.......>.>>...>>>>>..... ..(..(...((............)).(((((.......)))))......(.(.......).)....).)....... E. coli ApdP-stalled ribosomal complex; Ala-tRNA 8qfs B 61 2.7 URS00005AA258_866768 37923743 0030533 0006412 866768 gcccgganagcucagncggnagagcagcgugnccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).().....((.((..]....)).))))))))).... Cryo-EM structure of SidH from Legionella pneumophila; tRNA 8qhc B 61 3.1 URS00005AA258_866768 37923743 0030533 0006412 866768 gcccgganagcucagncggnagagcagcgugnccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<........>>>>.<>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).().....((.((..]....)).))))))))).... Cryo-EM structure of SidH from Legionella pneumophila in complex with LubX; t-RNA 8qo2 A 222 7.1 RF03117 38426934 0039694 31631 uucugcuguuaacagcuuucagccagggacguguuguauccuaggcaguggcccucccauaggucacaaugucgaagaucaacaaauacggucucgaacuacacugggcuccagaauuuccauggauguuugaggacgcagaggagaaguuggacaacccuaguaguucagagguggauaugauuugcuccaccacugcgcaaaagcuggaaacagacggaa <<<<<.<<<<..<.<<<<...<<.<......<<.<..<<.<<.<<<<.<<.<.<.......>>...>>.>>>>..>>>>..>>>......................<......<..<<....<...<<<......>>>...>...>>...>.......>..............<..<............>...>..>..>>..>>>>..>.>>>>..>>>>> (((.(.(((...(.(((((...(.(.(..(.((......(...(.(.((..((........))..))...).)...).....))......)..).......(....(....(....(..........(((....))).........)....).......)..)............(((..........))).....)..)..))))).)...)))..).))) Conserved Structures and Dynamics in 5-Proximal Regions of Betacoronavirus RNA Genomes; OC43-CoV-SL5 8qo4 A 156 5.9 RF03117 38426934 0039694 1335626 uuuuucaguuagagcgucgugucucuuguacgucucggucacaauacacgguuucguccggugcguggcaauucggggcacaucaugucuuucguggcuggugugaccgcgcaaggugcgcgcgguacguaucgagcagcgcucaacucugaaaaa <<<<<<<.....<<<..<....<<<..<<<<<<<<...<<<<..<<...<........>..>>.>>>>........>>..<.<<<.<<........>>>>>.>..<<<<.<.........>.>>>>>>>>>>.>>>..>.>>>......>>>>>>> (((((((.((..(((..(....(((..(((((.((....(((....(.(((......))))...))).........))....(((...(......)..)))....((((.((.......)).)))).))))).)))..).))).))...))))))) Conserved Structures and Dynamics in 5-Proximal Regions of Betacoronavirus RNA Genomes; MERS-CoV-SL5 8qo5 A 145 6.5 RF03120,RF03117 38426934 0039694 2697049 ucguugacaggacacgaguaacucgucuaucuucugcaggcugcuuacgguuucguccguguugcagccgaucaucagcacaucuagguuucguccgggugugaccgaaagguaagauggagagccuugucccugguuucaacga .<<<<<..<<...<<<.<...<<<.<<<<<<<<<<<...<<<<<.<.<<........>>.>..>>>>>.......>>>.<<<<<<...........>>>>>>.<<<....>>>>>>>>>>>>>>..>>>>..>>.....>>>>>. .((((...((...(((.(...(((.((.(..((.((....(((...((((......))))....)))........)).....((....(...)....))....((......))))..).)))))..))))..))......)))). Conserved Structures and Dynamics in 5-Proximal Regions of Betacoronavirus RNA Genomes; SARS-CoV-2-SL5 8qo9 2 98 5.29 RF00004 URS0000E60B66_9606 38383864 0045131 0000348 0005686 9606 cgcuucucggccaaguguaguaucuguucuuaucaguuuaauaucugauagauuuuuggagcaucgaccugguauugcaguaccuccaggaacggugc ...............................<<<<<.<....>.>>>>>...........<<<<<<.<<<<<.............>>>>>..>>>>>> ...............................(((((........)))))...........((((((.(((((.............)))))..)))))) Cryo-EM structure of a human spliceosomal B complex protomer; U2 snRNA 8qo9 5 115 5.29 RF00020 URS000075BAAE_9606 38383864 0000244,0000353 0005682,0046540 9606 acucugguuucucuucagaucgcauaaaucuuucgccuuuuacuaaagauuuccguggagaggaacaacucugagucuuaacccaauuuuuugaggccuugcuuuggcaaggcua .<<<...<<<<<<<<<<........<<<<<<<<...........>>>>>>>>...>>>>>>>>>>.......>>>...................<<<<<<<<....>>>>>>>>. .(((...((((((((((...((...((((((((.(.......).)))))))).)))))))))))).......)))....................(((((((....))))))).. Cryo-EM structure of a human spliceosomal B complex protomer; U5 snRNA 8qo9 4 127 5.29 RF00015 URS00003F07BD_9606 38383864 0017070 0000244,0000353 0005687,0046540 9606 agcuuugcgcaguggcaguaucguagccaaugaggucuauccgaggcgcgauuauugcuaauacuuuucccaauaccccgccgugacgacuagucggcacuggcaauuuuugacagucucgagacug ...................<<<<<.<<<.....<<.....>>..>>>>>>>>...........................<<<<<<.<<<<..>>>>.>>>.>>>.........<<<<<<<>>>>>>> ...................(((((.(((.....((.....))..))))))))...........................((.(((.((((())))).)))..)).........((((((())))))) Cryo-EM structure of a human spliceosomal B complex protomer; U4 snRNA 8qo9 6 94 5.29 RF00026 URS000035C796_9606 38383864 0030621 0000244,0000353 0005688,0046540 9606 gugcucgcuucggcagcacauauacuaaaauuggaacgauacagagaagauuagcauggccccugcgcaaggaugacauucgugaagcguauuu <<<<<.<<....>>>>>>>........................................................................... (((((.((....)))))))........................................................................... Cryo-EM structure of a human spliceosomal B complex protomer; U6 snRNA 8qoa Z 76 2.0 RF00005 URS00001ACE3E_562 38503753 0030533 0006412 679895 gcgggaauagcucaguugguagagcacgaccuugccaaggucggggucgcgaguucgagucucguuucccgcucca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... .((((((..((((.....[..)))).(((((.......))))).....(((((..]....)))))))))))..... Structure of SecM-stalled Escherichia coli 70S ribosome; P-site tRNA-gly 8qoa Y 77 2.0 RF00005 URS00002E063F_83333 38503753 0030533 0006412 679895 cggcgaguagcgcagcuugguagcgcaacugguuugggaccagugggucggagguucgaauccucucucgccgacca <<<<<<<..<<<<.........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))).... Structure of SecM-stalled Escherichia coli 70S ribosome; A-site tRNA-pro 8qoz 5 79 3.1 RF00020 38778104 0000244,0000353 0005682,0046540 9606 acucugguuucucuucagaucgcauaaaucuuucgccuuuuacuaaagauuuccguggagaggaacaacucugagucuu .<<<...<<<<<<<<<<........<<<<<<<<...........>>>>>>>>...>>>>>>>>>>.......>>>.... ..((...((((((((((...((...((((((((.(.......).)))))))).)))))))))))).......))..... Cryo-EM Structure of Pre-B+5'ss+ATPgammaS Complex (core part); U5 snRNA 8qoz 4 80 3.1 RF00015 38778104 0017070 0000244,0000353 0005687,0046540 9606 agcuuugcgcaguggcaguaucguagccaaugaggucuauccgaggcgcgauuauugcuaauugaaaacuuuucccaaua ...................<<<<<.<<<.....<<.....>>..>>>>>>>>............................ ...................(((((.(((.....((.....))..))))))))............................ Cryo-EM Structure of Pre-B+5'ss+ATPgammaS Complex (core part); U4 snRNA 8qoz 6 48 3.1 RF00026 38778104 0030621 0000244,0000353 0005688,0046540 9606 uuggaacgauacagagaagauuagcauggccccugcgcaaggaugaca ................................................ ................................................ Cryo-EM Structure of Pre-B+5'ss+ATPgammaS Complex (core part); U6 snRNA 8qp8 6 37 3.5 RF00026 38778104 0030621 0000244,0000353 0005688,0046540 9606 uuggaaaagauuagcauggccccugcgcaaggaugac ..................................... ..................................... Cryo-EM Structure of Pre-B Complex (core part); U6 snRNA 8qp8 5 71 3.5 RF00020 38778104 0000244,0000353 0005682,0046540 9606 acucugguuucucuucagaucgcauaaaucuuucgcacuaaagauuuccguggagaggaacaacucugagu <<<<.<<<<<<<<<<<<........<<<<<<<<......>>>>>>>>...>>>>>>>>>>>....>.>>>> .(((.(((((((((((....((...((((((((......)))))))).)).))))))))))....).))). Cryo-EM Structure of Pre-B Complex (core part); U5 snRNA 8qp8 4 76 3.5 RF00015 38778104 0017070 0000244,0000353 0005687,0046540 9606 agcuuugcgcaguggcaguaucguagccaaugaggucuauccgaggcgcgauuugcuaauugaaaacuucccaaua ...................<<<<<.<<<.....<<.....>>..>>>>>>>>........................ ...................(((((.(((.....((.....))..))))))))........................ Cryo-EM Structure of Pre-B Complex (core part); U4 snRNA 8qp9 6 37 4.1 RF00026 38778104 0030621 0000244,0000353 0005688,0046540 9606 uuggaaaagauuagcauggccccugcgcaaggaugac ..................................... ..................................... Cryo-EM Structure of Pre-B+AMPPNP Complex (core part); U6 snRNA 8qp9 5 71 4.1 RF00020 38778104 0000244,0000353 0005682,0046540 9606 acucugguuucucuucagaucgcauaaaucuuucgcacuaaagauuuccguggagaggaacaacucugagu .<<<.<<<<<<<<<<<<........<<<<<<<<......>>>>>>>>...>>>>>>>>>>>....>.>>>. .(((..(((((((((((...((...((((((((......)))))))).)))))))))))))......))). Cryo-EM Structure of Pre-B+AMPPNP Complex (core part); U5 snRNA 8qp9 4 76 4.1 RF00015 38778104 0017070 0000244,0000353 0005687,0046540 9606 agcuuugcgcaguggcaguaucguagccaaugaggucuauccgaggcgcgauuugcuaauugaaaacuucccaaua ....................<<<..<<......<<.....>>...>>.>>>......................... ...................((((..(((......(.....)...))).))))........................ Cryo-EM Structure of Pre-B+AMPPNP Complex (core part); U4 snRNA 8qpa 5 79 3.7 RF00020 38778104 0000244,0000353 0005682,0046540 9606 acucugguuucucuucagaucgcauaaaucuuucgccuuuuacuaaagauuuccguggagaggaacaacucugagucuu .<<<...<<<<<<<<<<........<<<<<<<<...........>>>>>>>>...>>>>>>>>>>.......>>>.... ..((...((((((((((...((...((((((((.(.......).)))))))).)))))))))))).......))..... Cryo-EM Structure of Pre-B+5'ssLNG Complex (core part); U5 snRNA 8qpa 4 62 3.7 RF00015 38778104 0017070 0000244,0000353 0005687,0046540 9606 agcuuugcgcaguggcaguaucguagccaaugaggucuauccgaggcgcgauuauugcuaau ...................<<<<<.<<<.....<<.....>>..>>>>>>>>.......... ...................(((((.(((.....((.....))..)))))))).......... Cryo-EM Structure of Pre-B+5'ssLNG Complex (core part); U4 snRNA 8qpa 6 47 3.7 RF00026 38778104 0030621 0000244,0000353 0005688,0046540 9606 uggaacgauacagagaagauuagcauggccccugcgcaaggaugaca ............................................... ............................................... Cryo-EM Structure of Pre-B+5'ssLNG Complex (core part); U6 snRNA 8qpb 5 79 3.7 RF00020 38778104 0000244,0000353 0005682,0046540 9606 acucugguuucucuucagaucgcauaaaucuuucgccuuuuacuaaagauuuccguggagaggaacaacucugagucuu .<<<...<<<<<<<<<<........<<<<<<<<...........>>>>>>>>...>>>>>>>>>>.......>>>.... .(.(....(((((((((...((...((((((((.(.......).)))))))).)))))))))))........).).... Cryo-EM Structure of Pre-B+ATP Complex (core part); U5 snRNA 8qpb 4 80 3.7 RF00015 38778104 0017070 0000244,0000353 0005687,0046540 9606 agcuuugcgcaguggcaguaucguagccaaugaggucuauccgaggcgcgauuauugcuaauugaaaacuuuucccaaua ...................<<<<<.<<<.....<<.....>>..>>>>>>>>............................ ...................(((((.(((.....((.....))..))))))))............................ Cryo-EM Structure of Pre-B+ATP Complex (core part); U4 snRNA 8qpb 6 48 3.7 RF00026 38778104 0030621 0000244,0000353 0005688,0046540 9606 uuggaacgauacagagaagauuagcauggccccugcgcaaggaugaca ................................................ ................................................ Cryo-EM Structure of Pre-B+ATP Complex (core part); U6 snRNA 8qpe 4 63 3.1 RF00015 38778104 0017070 0000244,0000353 0005687,0046540 9606 agcuuugcgcaguggcaguaucguagccaaugaggucuauccgaggcgcgauuauugcuaauu ...................<<<<<.<<<.....<<.....>>..>>>>>>>>........... ...................(((((.(((.....((.....))..))))))))........... Cryo-EM Structure of Pre-B-like Complex (core part); U4 snRNA 8qpe 5 115 3.1 RF00020 URS000075BAAE_9606 38778104 0000244,0000353 0005682,0046540 9606 acucugguuucucuucagaucgcauaaaucuuucgccuuuuacuaaagauuuccguggagaggaacaacucugagucuuaacccaauuuuuugaggccuugcuuuggcaaggcua .<<<..<<<<<<<<<<<........<<<<<<<<...........>>>>>>>>...>>>>>>>>>>>......>>>...................<<<<<<<<....>>>>>>>>. .(((...((((((((((...((...((((((((.(.......).)))))))).)))))))))))).......)))....................((((((......)))))).. Cryo-EM Structure of Pre-B-like Complex (core part); U5 snRNA 8qpe 6 43 3.1 RF00026 38778104 0030621 0000244,0000353 0005688,0046540 9606 acgauacagagaagauuagcauggccccugcgcaaggaugaca ........................................... ........................................... Cryo-EM Structure of Pre-B-like Complex (core part); U6 snRNA 8qpk 5 77 4.2 RF00020 38778104 0000244,0000353 0005682,0046540 9606 acucugguuucucuucagaucgcauaaaucuuucgccuuuuacuaaagauuuccguggagaggaacaacucugaguc ..<<...<<<<<<<<<<........<<<<<<<<...........>>>>>>>>...>>>>>>>>>>.......>>... ..((...(((((((((.....(...((((((((...........)))))))).)..))))))))).......))... Cryo-EM Structure of Pre-B+5'ss Complex (core part); U5 snRNA 8qpk 4 76 4.2 RF00015 38778104 0017070 0000244,0000353 0005687,0046540 9606 agcuuugcgcaguggcaguaucguagccaaugaggucuauccgaggcgcgauuugcuaauugaaaacuucccaaua ....................<<<<.<<......<<.....>>...>>>>>>......................... .....................(((.........(.......).....))).......................... Cryo-EM Structure of Pre-B+5'ss Complex (core part); U4 snRNA 8qpk 6 43 4.2 RF00026 38778104 0030621 0000244,0000353 0005688,0046540 9606 uuggaauacagagaagauuagcauggccccugcgcaaggauga ........................................... ........................................... Cryo-EM Structure of Pre-B+5'ss Complex (core part); U6 snRNA 8qpp U 77 3.4 RF00005 URS00002C7A07_1423 38177497 0030533 0006412 1423 gguccgguaguucaguugguuagaaugccugccugucacgcaggaggucgcggguucgagucccguccggaccgcca <<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))).... Bacillus subtilis MutS2-collided disome complex (stalled 70S); tRNA (77-MER) 8qxd 2 97 9.6 RF00004 38778104 0045131 0000348 0005686 9606 cgcuucucggcaaguguaguaucuguucuuaucaguuuaauaucugauagauuuuuggagcaucgaccugguauugcaguaccuccaggaacggugc ...............................<<<<.<....>.>>>>............<<<<<<.<<<<<.............>>>>>..>>>>>> ...............................((((........))))............((((((.(((((.............)))))..)))))) Cryo-EM structure of the cross-exon pre-B complex; U2 snRNA 8qxd 4 124 9.6 RF00015 38778104 0017070 0000244,0000353 0005687,0046540 9606 agcuuugcgcaguggcaguaucguagccaaugaggucuauccgaggcgcgauuugcuaauugaaaacuucccaauagccgugacgacuagucggcacuggcaauuuuugacagucucgagacug ...................<<<<<.<<<.....<<.....>>..>>>>>>>>........................<<<<<<.<<<<..>>>>.>>>.>>>.........<<<<<<<>>>>>>> ...................(((((.(((.....((.....))..))))))))........................(((.((.((((())))).))..))).........((((((())))))) Cryo-EM structure of the cross-exon pre-B complex; U4 snRNA 8qxd 5 104 9.6 RF00020 URS000075BAAE_9606 38778104 0000244,0000353 0005682,0046540 9606 acucugguuucucuucagaucgcauaaaucuuucgcacuaaagauuuccguggagaggaacaacucugaguccaauuuuuugaggccuugcuuuggcaaggcua <<<<.<<<<<<<<<<<<........<<<<<<<<......>>>>>>>>...>>>>>>>>>>>....>.>>>>............<<<<<<<<....>>>>>>>>. .(((.(((((((((((....((...((((((((......)))))))).)).))))))))))....).))).............((((((((....)))))))). Cryo-EM structure of the cross-exon pre-B complex; U5 snRNA 8qxd 6 53 9.6 RF00026 URS000035C796_9606 38778104 0030621 0000244,0000353 0005688,0046540 9606 uuggaaaagauuagcauggccccugcgcaaggaugacuucgugaagcgauuuu ..................................................... ..................................................... Cryo-EM structure of the cross-exon pre-B complex; U6 snRNA 8qzs 5 109 4.1 RF00020 38778104 0000244,0000353 0005682,0046540 9606 acucugguuucucuucagaucgcauaaaucuuucgccuuuuacuaaagauuuccguggagaggaacaacucugaguccaauuuuuugaggccuugcuuuggcaaggcua .<<<..<<<<<<<<<<<........<<<<<<<<...........>>>>>>>>...>>>>>>>>>>>......>>>.............<<<<<<<<....>>>>>>>>. .(((...((((((((((...((...((((((((.(.......).)))))))).)))))))))))).......))).............((((((((....)))))))). Cryo-EM structure of the cross-exon B-like complex; U5 snRNA 8qzs 2 98 4.1 RF00004 URS0000E60B66_9606 38778104 0045131 0000348 0005686 9606 cgcuucucggccaaguguaguaucuguucuuaucaguuuaauaucugauagauuuuuggagcaucgaccugguauugcaguaccuccaggaacggugc ...............................<<<<<.<....>.>>>>>...........<<<<<<.<<<<<.............>>>>>..>>>>>> ...............................(((((........)))))...........((((((.(((((.............)))))..)))))) Cryo-EM structure of the cross-exon B-like complex; U2 snRNA 8qzs 6 59 4.1 RF00026 38778104 0030621 0000244,0000353 0005688,0046540 9606 acgauacagagaagauuagcauggccccugcgcaaggaugacauucgugaagcguauuu ........................................................... ........................................................... Cryo-EM structure of the cross-exon B-like complex; U6 snRNA 8qzs 4 136 4.1 RF00015 URS00003F07BD_9606 38778104 0017070 0000244,0000353 0005687,0046540 9606 agcuuugcgcaguggcaguaucguagccaaugaggucuauccgaggcgcgauuauugcuaauuacuuuucccaauaccccgccgugacgacuugcaauauagucggcacuggcaauuuuugacagucucgagacug ...................<<<<<.<<<.....<<.....>>..>>>>>>>>............................<<<<<<.<<<<<........>>>>>.>>>.>>>.........<<<<<<..>>>>>> ...................(((((.(((.....((.....))..))))))))............................(.((((.(((((........))))).))).).)..........(((((()))))). Cryo-EM structure of the cross-exon B-like complex; U4 snRNA 8r08 1 153 6.1 RF00003 38778104 0030627 0000395 0005685 9606 gcaggggagauaccaugaucacgaaggugguuuucccagggcgaggcuuauccauugcacuccggaugugcugaccccugcgauuuccccaaaugugggaaacucgacugcauaauuugugguagugggggacugcguucgcgcuuuccccug <<<<.<<<<<.<<<<<..........>>>>>>>>>>.<<<<...<<<.<<<<<..........>>>>>.>>>...>>>>.<<<<<<<<<.......>>>>>>.>>>.>>>>...............<<<<<<..<<<<..>>>>..>>>>>>. .(((.(((((..((((..........)))).))))).((((...(((.(((((..........))))).)))...))))..(.((((((.......))))))..)..)))................((((((..(((....)))..)))))). Cryo-EM structure of the cross-exon pre-B+AMPPNP complex; U1 snRNA 8r08 2 97 6.1 RF00004 38778104 0045131 0000348 0005686 9606 cgcuucucggcaaguguaguaucuguucuuaucaguuuaauaucugauggauuuuuggagcaucgaccugguauugcaguaccuccaggaacggugc ...............................<<<<.<....>.>>>>............<<<<<<.<<<<<.............>>>>>..>>>>>> ...............................((((........))))............((((((.(((((.............)))))..)))))) Cryo-EM structure of the cross-exon pre-B+AMPPNP complex; U2 snRNA 8r08 4 124 6.1 RF00015 38778104 0017070 0000244,0000353 0005687,0046540 9606 agcuuugcgcaguggcaguaucguagccaaugaggucuauccgaggcgcgauuugcuaauugaaaacuucccaauagccgugacgacuagucggcacuggcaauuuuugacagucucgagacug ....................<<<..<<.......<.....>....>>.>>>.........................<<<<<<.<<<<..>>>>.>>>.>>>.........<<<<<<<>>>>>>> ...................((((..(((.....((.....))..))).))))........................(((..(.((((()))).))...))).........((((((())))))) Cryo-EM structure of the cross-exon pre-B+AMPPNP complex; U4 snRNA 8r08 5 104 6.1 RF00020 URS000075BAAE_9606 38778104 0000244,0000353 0005682,0046540 9606 acucugguuucucuucagaucgcauaaaucuuucgcacuaaagauuuccguggagaggaacaacucugaguccaauuuuuugaggccuugcuuuggcaaggcua .<<<.<<<<<<<<<<<<........<<<<<<<<......>>>>>>>>...>>>>>>>>>>>....>.>>>.............<<<<<<<<....>>>>>>>>. .(((..(((((((((((...((...((((((((......)))))))).)))))))))))))......))).............((((((((....)))))))). Cryo-EM structure of the cross-exon pre-B+AMPPNP complex; U5 snRNA 8r08 6 53 6.1 RF00026 URS000035C796_9606 38778104 0030621 0000244,0000353 0005688,0046540 9606 uuggaaaagauuagcauggccccugcgcaaggaugacuucgugaagcgauuuu ..................................................... ..................................................... Cryo-EM structure of the cross-exon pre-B+AMPPNP complex; U6 snRNA 8r09 2 98 4.3 RF00004 38778104 0045131 0000348 0005686 9606 cgcuucucggccaaguguaguaucuguucuuaucaguuuaauaucugauggauuuuuggagcaucgaccugguauugcaguaccuccaggaacggugc ................................<<<<.<....>.>>>>............<<<<<<.<<<<<.............>>>>>..>>>>>> ................................((((........))))............((((((.(((((.............)))))..)))))) Cryo-EM structure of the cross-exon pre-B+5'ss+ATPgammaS complex; U2 snRNA 8r09 5 112 4.3 RF00020 38778104 0000244,0000353 0005682,0046540 9606 acucugguuucucuucagaucgcauaaaucuuucgccuuuuacuaaagauuuccguggagaggaacaacucugagucuuccaauuuuuugaggccuugcuuuggcaaggcua .<<<...<<<<<<<<<<........<<<<<<<<...........>>>>>>>>...>>>>>>>>>>.......>>>................<<<<<<<<....>>>>>>>>. ..((...((((((((((...((...((((((((.(.......).)))))))).)))))))))))).......)).................((((((((....)))))))). Cryo-EM structure of the cross-exon pre-B+5'ss+ATPgammaS complex; U5 snRNA 8r09 4 128 4.3 RF00015 38778104 0017070 0000244,0000353 0005687,0046540 9606 agcuuugcgcaguggcaguaucguagccaaugaggucuauccgaggcgcgauuauugcuaauugaaaacuuuucccaauagccgugacgacuagucggcacuggcaauuuuugacagucucgagacug ...................<<<<<.<<<.....<<.....>>..>>>>>>>>............................<<<<<<.<<<<..>>>>.>>>.>>>.........<<<<<<<>>>>>>> ...................(((((.(((.....((.....))..))))))))............................((((((.((((())))).))).))).........((((((())))))) Cryo-EM structure of the cross-exon pre-B+5'ss+ATPgammaS complex; U4 snRNA 8r09 6 65 4.3 RF00026 38778104 0030621 0000244,0000353 0005688,0046540 9606 uuggaacgauacagagaagauuagcauggccccugcgcaaggaugacauucgugaagcguauuuu ................................................................. ................................................................. Cryo-EM structure of the cross-exon pre-B+5'ss+ATPgammaS complex; U6 snRNA 8r0a 5 115 5.8 RF00020 URS000075BAAE_9606 38778104 0000244,0000353 0005682,0046540 9606 acucugguuucucuucagaucgcauaaaucuuucgccuuuuacuaaagauuuccguggagaggaacaacucugagucuuaacccaauuuuuugaggccuugcuuuggcaaggcua ..<<...<<<<<<<<<<........<<<<<<<<...........>>>>>>>>...>>>>>>>>>>.......>>....................<<<<<<<<....>>>>>>>>. ..((...(((((((((.....(...((((((((...........)))))))).)..))))))))).......)).....................(((((((....))))))).. Cryo-EM structure of the cross-exon pre-B+5'ss complex; U5 snRNA 8r0a 2 97 5.8 RF00004 38778104 0045131 0000348 0005686 9606 cgcuucucggcaaguguaguaucuguucuuaucaguuuaauaucugauggauuuuuggagcaucgaccugguauugcaguaccuccaggaacggugc ..............................<<<<<.<....>.>>>>>...........<<<<<<.<<<<<.............>>>>>..>>>>>> ..............................(((((........)))))...........((((((.(((((.............)))))..)))))) Cryo-EM structure of the cross-exon pre-B+5'ss complex; U2 snRNA 8r0a 4 124 5.8 RF00015 38778104 0017070 0000244,0000353 0005687,0046540 9606 agcuuugcgcaguggcaguaucguagccaaugaggucuauccgaggcgcgauuugcuaauugaaaacuucccaauagccgugacgacuagucggcacuggcaauuuuugacagucucgagacug ....................<<<<.<<..................>>>>>>.........................<<<<<<.<<<<..>>>>.>>>.>>>.........<<<<<<<>>>>>>> .....................(((.........(.......).....)))..........................(((.((.((((())))).))..))).........((((((())))))) Cryo-EM structure of the cross-exon pre-B+5'ss complex; U4 snRNA 8r0a 6 59 5.8 RF00026 38778104 0030621 0000244,0000353 0005688,0046540 9606 uuggaauacagagaagauuagcauggccccugcgcaaggaugauucgugaagcgauuuu ........................................................... ........................................................... Cryo-EM structure of the cross-exon pre-B+5'ss complex; U6 snRNA 8r0b 2 98 4.4 RF00004 38778104 0045131 0000348 0005686 9606 cgcuucucggccaaguguaguaucuguucuuaucaguuuaauaucugauggauuuuuggagcaucgaccugguauugcaguaccuccaggaacggugc ...............................<<<<<.<....>.>>>>>...........<<<<<<.<<<<<.............>>>>>..>>>>>> ...............................(((((........)))))...........((((((.(((((.............)))))..)))))) Cryo-EM structure of the cross-exon pre-B+ATP complex; U2 snRNA 8r0b 4 128 4.4 RF00015 38778104 0017070 0000244,0000353 0005687,0046540 9606 agcuuugcgcaguggcaguaucguagccaaugaggucuauccgaggcgcgauuauugcuaauugaaaacuuuucccaauagccgugacgacuagucggcacuggcaauuuuugacagucucgagacug ...................<<<<<.<<<.....<<.....>>..>>>>>>>>............................<<<<<<.<<<<..>>>>.>>>.>>>.........<<<<<<<>>>>>>> ...................(((((.(((.....((.....))..))))))))............................(((.((.((((())))).))..))).........((((((())))))) Cryo-EM structure of the cross-exon pre-B+ATP complex; U4 snRNA 8r0b 5 112 4.4 RF00020 38778104 0000244,0000353 0005682,0046540 9606 acucugguuucucuucagaucgcauaaaucuuucgccuuuuacuaaagauuuccguggagaggaacaacucugagucuuccaauuuuuugaggccuugcuuuggcaaggcua .<<<...<<<<<<<<<<........<<<<<<<<...........>>>>>>>>...>>>>>>>>>>.......>>>................<<<<<<<<....>>>>>>>>. .(.(....(((((((((...((...((((((((.(.......).)))))))).)))))))))))........).)................((((((((....)))))))). Cryo-EM structure of the cross-exon pre-B+ATP complex; U5 snRNA 8r0b 6 65 4.4 RF00026 38778104 0030621 0000244,0000353 0005688,0046540 9606 uuggaacgauacagagaagauuagcauggccccugcgcaaggaugacauucgugaagcguauuuu ................................................................. ................................................................. Cryo-EM structure of the cross-exon pre-B+ATP complex; U6 snRNA 8r55 7 73 3.57 RF00005 URS00023358F7_1423 38177497 0030533 0006412 1423 gcgcggauagcucagucgguagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgcgca <<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>. (((((((..((((........)))).(((((.......))))).....((.((.......)).))))))))). Bacillus subtilis MutS2-collided disome complex (collided 70S); tRNA (73-MER) 8r55 U 77 3.57 RF00005 URS00002C7A07_1423 38177497 0030533 0006412 1423 gguccgguaguucaguugguuagaaugccugccugucacgcaggaggucgcggguucgagucccguccggaccgcca <<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.........)))).(((((.......)))))......((((.......)))).))))))).... Bacillus subtilis MutS2-collided disome complex (collided 70S); tRNA (77-MER) 8r7n A 114 3.4 RF00548 39809272 0030627 0000395 0005692 9606 agggcuucugucgugaguggcacacguagggcaauugcucugcgugcggaaucgacaucaagagauuucggaagcauaauuuuuugguauuugggcagcuggucccggcgcccu ...<<<<<<<<<......>>>><<<<<<<<<<<..>>>>>>>>>>><<<<<<<..........>>>>>>>>>>>>.................<<<<.<<<<<..>>>>>>>>>. ...(((((((((......))))(((((((((((())))))))))))(((((((..........)))))))))))).................((((.((.((..)).)))))). Overall structure of the U11 snRNP; U11 snRNA 8rc0 5 104 3.2 RF00020 URS000075BAAE_9606 38467877 0000244,0000353 0005682,0046540 9606 acucugguuucucuucagaucgcauaaaucuuucgcacuaaagauuuccguggagaggaacaacucugaguccaauuuuuugaggccuugcuuuggcaaggcua <<<<.<<<<<<<<<<<<........<<<<<<<<......>>>>>>>>...>>>>>>>>>>>....>.>>>>............<<<<<<<<....>>>>>>>>. ((((.((((((((((((...((...((((((((......)))))))).)))))))))))))....).))))............((((((((....)))))))). Structure of the human 20S U5 snRNP; U5 snRNA 8rm5 2 98 6.9 RF00004 38778104 0045131 0000348 0005686 9606 cgcuucucggccaaguguaguaucuguucuuaucaguuuaauaucugauggauuuuuggagcaucgaccugguauugcaguaccuccaggaacggugc ................................<<<<........>>>>............<<<<<<.<<<<<.............>>>>>..>>>>>> ...............................(.(((........))).)...........((((((.(((((.............)))))..)))))) Cryo-EM structure of the cross-exon pre-B+5'ssLNG+ATPyS complex; U2 snRNA 8rm5 5 112 6.9 RF00020 38778104 0000244,0000353 0005682,0046540 9606 acucugguuucucuucagaucgcauaaaucuuucgccuuuuacuaaagauuuccguggagaggaacaacucugagucuuccaauuuuuugaggccuugcuuuggcaaggcua .<<<...<<<<<<<<<<........<<<<<<<<...........>>>>>>>>...>>>>>>>>>>.......>>>................<<<<<<<<....>>>>>>>>. ..((...((((((((((...((...((((((((.(.......).)))))))).)))))))))))).......)).................((((((((....)))))))). Cryo-EM structure of the cross-exon pre-B+5'ssLNG+ATPyS complex; U5 snRNA 8rm5 4 110 6.9 RF00015 38778104 0017070 0000244,0000353 0005687,0046540 9606 agcuuugcgcaguggcaguaucguagccaaugaggucuauccgaggcgcgauuauugcuaaugccgugacgacuagucggcacuggcaauuuuugacagucucgagacug ...................<<<<<.<<<.....<<.....>>..>>>>>>>>..........<<<<<<.<<<<..>>>>.>>>.>>>.........<<<<<<<>>>>>>> ...................(((((.(((.....((.....))..))))))))..........((((((.((((())))).))).))).........((((((())))))) Cryo-EM structure of the cross-exon pre-B+5'ssLNG+ATPyS complex; U4 snRNA 8rm5 6 64 6.9 RF00026 38778104 0030621 0000244,0000353 0005688,0046540 9606 uggaacgauacagagaagauuagcauggccccugcgcaaggaugacauucgugaagcguauuuu ................................................................ ................................................................ Cryo-EM structure of the cross-exon pre-B+5'ssLNG+ATPyS complex; U6 snRNA 8ro0 2 61 2.9 RF00004 38925148 0045131 0000348 0005686 6239 cgcuucuucggcuuagcuaagaucnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn ............................................................. ............................................................. Structure of the C. elegans Intron Lariat Spliceosome primed for disassembly (ILS'); U2 snRNA 8ro0 5 111 2.9 RF00020 38925148 0000244,0000353 0005682,0046540 6239 acucugguuccucugcauuuaaccgugaaaaucuuucgccuuuuacuaaagauuuccgugcaaaggagcauacauugaguaaauuuuuggaguccccucgaaagagcggga ......<<<<<<.<<<<...........<<<<<<<<...........>>>>>>>>...>>>>.>>>>>>.......................<<<<<<<....>>>.>>>> ......((((((.((((.......(...((((((((.(.......).)))))))).).)))).)))))).......................(((((((....))).)))) Structure of the C. elegans Intron Lariat Spliceosome primed for disassembly (ILS'); U5 snRNA 8ro0 6 90 2.9 RF00026 38925148 0030621 0000244,0000353 0005688,0046540 6239 guucuuccgagaacauauacuaaaauuggaacaauacagagaagauuagcauggccccugcgcaaggaugacacgcaaauucgugaagcg <<<<<<..>>>>>>.....................................<<...<<<.....>>>....>>................. ((((((..)))))).....................................((..((((.....)))..).))................. Structure of the C. elegans Intron Lariat Spliceosome primed for disassembly (ILS'); U6 snRNA 8ro1 2 76 3.0 RF00004 38925148 0045131 0000348 0005686 6239 aucgcuucuucggcuuagcuaagaucaaaguguaguaucnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn ............................................................................ ............................................................................ Structure of the C. elegans Intron Lariat Spliceosome double-primed for disassembly (ILS''); U2 snRNA 8ro1 5 111 3.0 RF00020 38925148 0000244,0000353 0005682,0046540 6239 acucugguuccucugcauuuaaccgugaaaaucuuucgccuuuuacuaaagauuuccgugcaaaggagcauacauugaguaaauuuuuggaguccccucgagagagcggga ......<<<<<<.<<<<...........<<<<<<<<...........>>>>>>>>...>>>>.>>>>>>.......................<<<<<<<....>>>.>>>> ......(.((((.((((.......(...((((((((.(.......).)))))))).).)))).)))).).......................(((((((....))).)))) Structure of the C. elegans Intron Lariat Spliceosome double-primed for disassembly (ILS''); U5 snRNA 8ro1 6 101 3.0 RF00026 38925148 0030621 0000244,0000353 0005688,0046540 6239 guucuuccgagaacauauacuaaaauuggaacaauacagagaagauuagcauggccccugcgcaaggaugacacgcaaauucgugaagcguuccaaauuuu <<<<<<..>>>>>>.....................................<<...<<<.....>>>....>>............................ ((((((..)))))).....................................((..((((.....)))..).))............................ Structure of the C. elegans Intron Lariat Spliceosome double-primed for disassembly (ILS''); U6 snRNA 8ro2 2 39 3.5 RF00004 38925148 0045131 0000348 0005686 9606 aucgcuucucggccuuuuggcuaagaucaaguguaguau ....................................... ....................................... Integrative Structure of the human intron lariat Spliceosome (ILS''); U2 snRNA 8ro2 6 97 3.5 RF00026 38925148 0030621 0000244,0000353 0005688,0046540 9606 gugcucgcuucggcagcacauauacuaaaauuggaacgauacagagaagauuagcauggccccugcgcaaggaugacacgcaaauucgugaagcguu <<<<<.<<....>>>>>>>.....................................<<...<<<.....>>>....>>................... (((((.((....))))))).....................................((..((((.....)))..).))................... Integrative Structure of the human intron lariat Spliceosome (ILS''); U6 snRNA 8ro2 5 92 3.5 RF00020 38925148 0000244,0000353 0005682,0046540 9606 guuucucuucagaucgcauaaaucuuucgccuuuuacuaaagauuuccguggagaggaacaccaauuuuuugagccuugccuuggcaaggcu <<<<<<<<<<<........<<<<<<<<.<.......>.>>>>>>>>...>>>>>>>>>>>............<<<<<<<<....>>>>>>>> (((((((((((...((...((((((((.(.......).)))))))).))))))))))))).............(((((((....))))))). Integrative Structure of the human intron lariat Spliceosome (ILS''); U5 snRNA 8ruh A 390 4.55 RF02001,RF01998 URS000080DF32_182710 38898052 0000373 182710 ugugcccggcaugggugcagucuauagggugagagucccgaacugugaaggcagaaguaacaguuagccuaacgcaaggguguccguggcgacauggaaucugaaggaagcggacggcaaaccuucggucugaggaacacgaacuucauaugaggcuagguaucaauggaugaguuugcauaacaaaacaaaguccuuucugccaaaguugguacagaguaaaugaagcagauugaugaagggaaagacugcauucuuacccggggaggucuggaaacagaagucagcagaagucauaguacccuguucgcaggggaaggacggaacaaguauggcguucgcgccuaagcuugaaccgccguauaccgaacgguacguacgguggugugg ....<<<<<...<<<<<<<<<<<...<<<.......>>>..<<<<<...(((((((...>>>>>..<<<...<<<..<<<<.<<<<<<....>>>>>>>>>>.......>>>...>>>...<<<<<<<<<<<...........<<<<<......<<<..<<<<<<<<<<<<..<<<<........>>>>...>>>>.)))))))...>>>>>>>>..>>>...>>>>>>>>>>...>>>>>>...>>>>>>>>>>>....>>>>>....<<<<....>>>>...........<<<......<<<<<....>>>>>....>>>....<<<<<..<<<<....>>>>...>>>>>.<<<<<<<<<<<<<....>>>..>>>>>>>>>>.... .[<.((((({..(((((((((((...(((.......)))..(((((...[[[[[[[...)))))..(((...(((..((((.((((((....))))))))))...>}..)))...)))...(((((((((((.(.....)...(((((.....[(((..(.((((((((((..((((.]......))))...)))).]]]]]]]...)))))).)..)))...))))))))))...))))))...)))))))))))...])))))(...((((....))))...).......(((.(....(((........)))...))))....(((((..((((....))))...))))).(((((((((((((....)))..)))))))))).... Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Mg2+ and 5'-exon; Domains 1-5 8rui A 390 3.31 RF02001,RF01998 URS000080DF32_182710 38898052 0000373 182710 ugugcccggcaugggugcagucuauagggugagagucccgaacugugaaggcagaaguaacaguuagccuaacgcaaggguguccguggcgacauggaaucugaaggaagcggacggcaaaccuucggucugaggaacacgaacuucauaugaggcuagguaucaauggaugaguuugcauaacaaaacaaaguccuuucugccaaaguugguacagaguaaaugaagcagauugaugaagggaaagacugcauucuuacccggggaggucuggaaacagaagucagcagaagucauaguacccuguucgcaggggaaggacggaacaaguauggcguucgcgccuaagcuugaaccgccguauaccgaacgguacguacgguggugugg ....<<<<<...<<<<<<<<<<<...<<<.......>>>..<<<<<...(((((((...>>>>>..<<<...<<<..<<<<.<<<<<<....>>>>>>>>>>.......>>>...>>>...<<<<<<<<<<<...........<<<<<......<<<..<<<<<<<<<<<<..<<<<........>>>>...>>>>.)))))))...>>>>>>>>..>>>...>>>>>>>>>>...>>>>>>...>>>>>>>>>>>....>>>>>....<<<<....>>>>...........<<<......<<<<<....>>>>>....>>>....<<<<<..<<<<....>>>>...>>>>>.<<<<<<<<<<<<<....>>>..>>>>>>>>>>.... .[<.((((({..(((((((((((...(((.......)))..(((((...[[[[[[[...)))))..(((...(((..((((.((((((....))))))))))...>}..)))...)))...(((((((((((.(.....)...(((((.....[.((..(((.((((((((..((((.]......))))...)))).]]]]]]]...)))).)))..))....))))))))))...))))))...)))))))))))...])))))(...((((....))))...).......(((.(....(((.(....).)))...))))....(((((..((((....))))...))))).(((((((((((((....)))..)))))))))).... Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Mg2+, 5'-exon, and intronistat B after 1h soaking; Domains 1-5 8ruj A 390 3.12 RF02001,RF01998 URS000080DF32_182710 38898052 0000373 182710 ugugcccggcaugggugcagucuauagggugagagucccgaacugugaaggcagaaguaacaguuagccuaacgcaaggguguccguggcgacauggaaucugaaggaagcggacggcaaaccuucggucugaggaacacgaacuucauaugaggcuagguaucaauggaugaguuugcauaacaaaacaaaguccuuucugccaaaguugguacagaguaaaugaagcagauugaugaagggaaagacugcauucuuacccggggaggucuggaaacagaagucagcagaagucauaguacccuguucgcaggggaaggacggaacaaguauggcguucgcgccuaagcuugaaccgccguauaccgaacgguacguacgguggugugg ....<<<<<...<<<<<<<<<<<...<<<.......>>>..<<<<<...(((((((...>>>>>..<<<...<<<..<<<<.<<<<<<....>>>>>>>>>>.......>>>...>>>...<<<<<<<<<<<...........<<<<<......<<<..<<<<<<<<<<<<..<<<<........>>>>...>>>>.)))))))...>>>>>>>>..>>>...>>>>>>>>>>...>>>>>>...>>>>>>>>>>>....>>>>>....<<<<....>>>>...........<<<......<<<<<....>>>>>....>>>....<<<<<..<<<<....>>>>...>>>>>.<<<<<<<<<<<<<....>>>..>>>>>>>>>>.... .[<.((((({..(((((((((((...(((.......)))..(((.(...[[.[[[[...).)))..(((...(((..((((.((((((....))))))))))...>}..)))...)))...(((((((((((.(.....)...(((((.....[(((...((.((((((((..((((.]......))))...)))).]]]].]]...)))).))...)))...))))))))))...))))))...)))))))))))...])))))(...((((....))))...).......(((.(....(((.(....).)))...))))....(((((..((((....))))...))))).(((((((((((((....)))..)))))))))).... Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Mg2+, 5'-exon, and ARN25850 after 1h soaking; Domains 1-5 8ruk A 388 4.81 RF02001,RF01998 38898052 0000373 182710 ugugcccggcaugggugcagucuauagggugagagucccgaacugugaaggcagaaguaacaguuagccuaacgcaaggguguccguggcgacauggaaucugaaggaagcggacggcaaaccuucggucugaggaacacgaacuucauaugaggcuagguaucaauggaugaguuugcauacaaaacaaaguccuuucugccaaaguugguacagaguaaaugaagcagauugaugaagggaaagacugcauucuuacccggggaggucuggaaacagaagucagcagaagucauaguacccuguucgcaggggaaggacggaacaaguauggcguucgcgccuaagcuugaaccgccguauaccgaacgguacguacgguggugug ....<<<<<...<<<<<<<<<<<...<<<.......>>>..(((((...<<<<<<<...)))))..<<<...<<<..<<<<.<<<<<<....>>>>>>>>>>.......>>>...>>>...(((((([[[[[...........[[[[[......[[[....((((((<<<<..<<<<.......>>>>...>>>>.>>>>>>>...))))))....]]]...]]]]]]]]]]...))))))...>>>>>>>>>>>....>>>>>....<<<<....>>>>...........<<<......<<<<......>>>>....>>>....<<<<<..<<<<....>>>>...>>>>>.<<<<<<<<<<<<<....>>>..>>>>>>>>>>... .[<.((((({..(((((((((((...(((.......)))..(((((...[[[[[[[...)))))..(((...(((..((((.((((((....))))))))))...>}..)))...)))...(((((((((((.(.....)...(((((.....[(((...((.(((.((((..((((.].....))))...)))).]]]]]]]....))).))...)))...))))))))))...))))))...)))))))))))...])))))(...((((....))))...).......(((.(....(((........)))...))))....(((((..((((....))))...)))))..((((((((((((....)))..))))))))).... Structure of Oceanobacillus iheyensis group II intron in the presence of Na+, Mg2+, and ARN25850; Domains 1-5 8rul A 393 3.62 RF02001,RF01998 URS000080DE44_182710 38898052 0000373 182710 ggggugugcccggcaugggugcagucuauagggugagagucccgaacugugaaggcagaaguaacaguuagccuaacgcaaggguguccguggcgacauggaaucugaaggaagcggacggcaaaccuucggucugaggaacacgaacuucauaugaggcuagguaucaauggaugaguuugcauaacaaaacaaaguccuuucugccaaaguugguacagaguaaaugaagcagauugaugaagggaaagacugcauucuuacccggggaggucuggaaacagaagucagcagaagucauaguacccuguucgcaggggaaggacggaacaaguauggcguucgcgccuaagcuugaaccgccguauaccgaacgguacguacgguggugug [.......<<<<<...<<<<<<<<<<<...<<<.......>>>..<<<<<...(((((((...>>>>>..<<<...<<<..<<<<.<<<<<<....>>>>>>>>>>.......>>>...>>>...<<<<<<<<<<<...........<<<<<......<<<..<<<<<<<<<<<<..<<<<......].>>>>...>>>>.)))))))...>>>>>>>>..>>>...>>>>>>>>>>...>>>>>>...>>>>>>>>>>>....>>>>>....<<<<....>>>>...........<<<......<<<<......>>>>....>>>....<<<<<..<<<<....>>>>...>>>>>.<<<<<<<<<<<<<....>>>..>>>>>>>>>>... .....[<.((((({..(((((((((((...(((.......)))..(((((...[[[[[[[...)))))..(((...(((..((((.((((((....))))))))))...>}..)))...)))...(((((((((((.(.....)...(((((.....[(((..((((((((((((..((((.]......))))...)))).]]]]]]]...))))))))..)))...))))))))))...))))))...)))))))))))...])))))(...((((....))))...).......(((.(....(((........)))...))))....(((((.((((......)))..)))))).(((((((((((((....)))..))))))))))... Structure of Oceanobacillus iheyensis group II intron in the presence of Li+ and Mg2+; Domains 1-5 8rum A 393 3.62 RF02001,RF01998 URS000080DE44_182710 38898052 0000373 182710 ggggugugcccggcaugggugcagucuauagggugagagucccgaacugugaaggcagaaguaacaguuagccuaacgcaaggguguccguggcgacauggaaucugaaggaagcggacggcaaaccuucggucugaggaacacgaacuucauaugaggcuagguaucaauggaugaguuugcauaacaaaacaaaguccuuucugccaaaguugguacagaguaaaugaagcagauugaugaagggaaagacugcauucuuacccggggaggucuggaaacagaagucagcagaagucauaguacccuguucgcaggggaaggacggaacaaguauggcguucgcgccuaagcuugaaccgccguauaccgaacgguacguacgguggugug ........<<<<<...<<<<<<<<<<<...<<<.......>>>..<<<<<...(((((((...>>>>>..<<<...<<<..<<<<.<<<<<<....>>>>>>>>>>.......>>>...>>>...<<<<<<<<<<<...........<<<<<......<<<..<<<<<<<<<<<<..<<<<........>>>>...>>>>.)))))))...>>>>>>>>..>>>...>>>>>>>>>>...>>>>>>...>>>>>>>>>>>....>>>>>....<<<<....>>>>...........<<<......<<<<......>>>>....>>>....<<<<<..<<<<....>>>>...>>>>>.<<<<<<<<<<<<<....>>>..>>>>>>>>>>... .....[<.((((({..(((((((((((...(((.......)))..(((.(...[[[[[[[...).)))..(((...(((..((((.((((((....))))))))))...>}..)))...)))...(((((((((((.(.....)...(((((.....[(((..(.((((((((((..(((..].......)))...)))).]]]]]]]...)))))).)..)))...))))))))))...))))))...)))))))))))...])))))(...((((....))))...).......(((.(....(((........)))...))))....(((((..(((......)))...))))).(.(((((((((((....)))..)))))))).)... Structure of Oceanobacillus iheyensis group II intron in the presence of Li+, Mg2+, and intronistat B; Domains 1-5 8run A 393 3.73 RF02001,RF01998 URS000080DE44_182710 38898052 0000373 182710 ggggugugcccggcaugggugcagucuauagggugagagucccgaacugugaaggcagaaguaacaguuagccuaacgcaaggguguccguggcgacauggaaucugaaggaagcggacggcaaaccuucggucugaggaacacgaacuucauaugaggcuagguaucaauggaugaguuugcauaacaaaacaaaguccuuucugccaaaguugguacagaguaaaugaagcagauugaugaagggaaagacugcauucuuacccggggaggucuggaaacagaagucagcagaagucauaguacccuguucgcaggggaaggacggaacaaguauggcguucgcgccuaagcuugaaccgccguauaccgaacgguacguacgguggugug [.......<<<<<...<<<<<<<<<<<...<<<.......>>>..<<<<<...(((((((...>>>>>..<<<...<<<..<<<<.<<<<<<....>>>>>>>>>>.......>>>...>>>...<<<<<<<<<<<...........<<<<<......<<<..<<<<<<<<<<<<..<<<<......].>>>>...>>>>.)))))))...>>>>>>>>..>>>...>>>>>>>>>>...>>>>>>...>>>>>>>>>>>....>>>>>....<<<<....>>>>...........<<<......<<<<......>>>>....>>>....<<<<<..<<<<....>>>>...>>>>>.<<<<<<<<<<<<<....>>>..>>>>>>>>>>... {....[<.((((({..(((((((((((...(((.......)))..(((((...[[[[[[[...)))))..(((...(((..((((.((((((....))))))))))...>}..)))...)))...(((((((((((.(.....)...(((((.....[(((..((((((((((((..((((.]....}.))))...)))).]]]]]]]...))))))))..)))...))))))))))...))))))...)))))))))))...])))))(...((((....))))...).......(((.(....(((........)))...))))....(((((..((((....))))...))))).(((((((((((((....)))..))))))))))... Structure of Oceanobacillus iheyensis group II intron in the presence of Li+, Mg2+, and ARN25850; Domains 1-5 8s1p a 69 1.96 RF00005 URS00002F180C_224308 38811035 0030533 0006412 224308 ggggccuuagcucaggggagagcgccugcucgcaggaggucagcgguucgaucccgcuaggcuccacca <<<<<<<..<<<<......>>>>.<<<<<..>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((...[..)))).(((((..))))).....(((((..]....)))))))))))).... YlmH bound to PtRNA-50S; P-tRNA 8s1u a 69 3.4 RF00005 URS00002F180C_224308 38811035 0030533 0006412 224308 ggggccuuagcucaggggagagcgccugcucgcaggaggucagcgguucgaucccgcuaggcuccacca <<<<<<<..<<<<......>>>>.<<.<....>.>>.....<<<<.........>>>>>>>>>>>.... ((.((((..((((...[..)))).((.(....).)).....((((...].....)))))))).)).... YlmH bound to stalled 50S subunits with RqcH and PtRNA; P-tRNA 8s95 C 146 3.1 RF00386,RF00005 URS0002681463_32630 37486760 0030533 0039689,0006412 32630 gcccggauagcucagucgguagagcagcggcuaaaacagcucugggaccccagaggcccacguggcggcuaguacuccgguauugcgguacccuuguacgccuguuuuagccgcggguccaggguucaagucccuguucgggcgcc <<<<<<...<<<<........>>>>.<<<<<<<<<<<<<<<<<<<<..>>>>>>><<<.....>>>.<...<<<<...<<<<......>>>>...>>>>.>>>>>>>>>>>>>>.....<<<<<.......>>>>>.>>>>>>... (((((((..((((.....[..)))).((((((((((((((((((((..)))))))(((.....))).((..((((...(((((....)))))...))))))))))))))))))).....(((((..]....))))))))))))... Crystal Structure of Poliovirus (type 1 Mahoney) cloverleaf RNA with tRNA scaffold; Lysine tRNA scaffold,Poliovirus cloverleaf RNA 8sa5 B 135 3.5 RF00174,RF01689,RF01482 URS000080E34D_119072 37534568 0031419 0010468,0045893,0046336 119072 gguuaaagccuuauggucgcuuaaaagggaagacgggugagaaucccgcgcagcccccgcuacugugagggaggacccgagccaggagaccugccauaagguuuuagaaguucgccuucggggggaaggugaaca ..<<<<<<<<<<<<<<<........<<<.....<<<<.......>>>>.((<<......>>.<<<....<<.....>>..))>>>....>>>>>>>>>>>>>>>>>>..<<<<<<<<<.......>>>>>>>>>. ...(((((((((((((.........((....(.((((.......)))))[[((......)).(((...(........)..]]))).....)).)))))))))))))...(((((((((.......))))))))). Adenosylcobalamin-bound riboswitch dimer, form 4; adenosylcobalamin riboswitch form 4 8scb 3 75 2.5 RF00005 URS000086855F_9986 38172604 0030533 0006412 9986 gcccggauagcucagcuguagagcaucagacuuuuaaucugaggguccaggguucaagucccuguucgggcgcca <<<<<<...<<<<.......>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>.>>>>>>.... (((((((..((((....[..)))).(((((.......))))).....(((((..]....)))))))))))).... Terminating ribosome with SRI-41315; E_tRNA 8sch A 68 NA RF00161 URS0002681442_7227 37427795 0005515 0008595,0017148 7227 gagaauccagcucuggaagcguuuauauaacaugaaauauauauacgcauuccgaucaaagcuggguu ....<<<<<<<<..<<<.<<<<.<<<<<<........>>>>>>.>>>>..>>>......>>>>>>>>. ....((((((((..(((.((((.((((((........)))))).))))..)))......)))))))). TCEI_III NMR Structure; RNA (68-MER) 8sh5 R 88 2.75 RF02521 URS0002681455_193120 37548413 0019081 193120 nguagaacacgugggauaggggaugaccuugucgaccgaaacacgguccccugcuccuucgagcuggcaaggcgcucacagguucuac .<<<<<<<..<<<<<...(.......<<<<<<<<<<<<.....>>>>>..).<<<<....>>>>.>>>>>>>..>>>>>..>>>>>>> .(((((((..(((((.......[.([((((((((((((.....)))))...]((((....))))])))))))).)))))..))))))) Crystal structure of 3'cap-independent translation enhancers (CITE) from Pea enation mosaic virus RNA 2 (PEMV2) with Fab BL3-6K170A; RNA (88-MER) 8sp9 C 136 2.92 RF00386,RF00005 URS000268145B_32630 37486760 0030533 0039689 32630 gcccggauagcucagucgguagagcagcgguaaaacagccuguacagggcccauugggcgcuagcacucugguaucacgguaccuuugugcgccuguuuuaccgcggguccaggguucaagucccuguucgggcgc <<<<<<<..<<<<........>>>>.<<<<<<<<<<<<<<<<..>>>><<<<...>>>><...<<<<...<<<<<....>>>>>...>>>>.>>>>>>>>>>>>>.....<<<<<.......>>>>>>>>>>>>.. (((((((..((((.....[..)))).((((((((((((((((()))))((((...))))((..((((...(((((....)))))...)))))))))))))))))).....(((((..]....)))))))))))).. Crystal Structure of Coxsackievirus B3 (CVB3) Cloverleaf RNA with tRNA scaffold; tRNA scaffold,CVB3 Cloverleaf RNA 8syl w 74 2.9 RF00005 URS00005AA258_562 37537169 0030533 0006412 562 gcccgganagcucaggguagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<......>>>><<<<<<<.....>>>>>>.>...<<<<<.......>>>>>>>>>>>>.... (((((((..((((...[..)))).((((.........)))).....(((((..]....)))))))))))).... Cryo-EM structure of the Escherichia coli 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs; phenylalanine tRNA 8syl x 76 2.9 RF00005 URS000041AF00_562 37537169 0030533 0006412 562 gcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaacca <<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Cryo-EM structure of the Escherichia coli 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs; P-site initiator tRNA 8syl y 74 2.9 RF00005 URS00005AA258_562 37537169 0030533 0006412 562 gcccgganagcucaggguagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<......>>>><<<<<<.......>>>>>.>...<<<<<.......>>>>>>>>>>>>.... (((((((..((((...[..)))).((((.........)))).....(((((..]....)))))))))))).... Cryo-EM structure of the Escherichia coli 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs; phenylalanine tRNA 8t2r B 545 3.1 RF00029 URS0002915678_39491 37993708 0000373 39491 guuugcgcgccaugggcgcgcucuaacggguguaagucccgaacaugcccagguagugggaaauguauagccgaacagcaagggugucuacugugagguggaaucugaaggaagcuguaagcgaaucucugguccgacggacagaaaucgcauauaaggcuaggcuucgagugauaagcuggcaaagaacagugaagucuaauaacuaccaguagaagcagaguaaaugcggcggauauauggagagaaagagcgugcaccuuaagcguggaggucucacagaggugccuaguaacaacgaacugugagaagucagccgagcccauaguagugaagaagucucuguaauggggauggagcgaaggggcgaacaaucaaucaugucucguauugcagaaaugacaacaucugccguaaccaaucggguaaaagguggucaaaucaagcgagacggaaagguaaguugauugaaccgccguauacggaaccguacguacgguggugugagaggucggaauuucgaaauucuuccuacucgauugaau .....<<<<<...<<<<<<<<<<<..<<<<.......>>>>.<<<<.<<<..(((((>>>..>>>>...<<....<<<<..<<<<.<<<<<<....>>>>>>>>>>.......>>>>...>>...<<<<<<<<<<<...........<<<<<......<<<..<<<<<....<<<..<<<<........>>>>...>>>.....))))).....>>>>>..>>>...>>>>>>>>>>...>>>>>>...>>>>>>>>>.>>....>>>>>...<<<<<<<<<<<<..>>>.<......>...>>>>>>>>..>....<..<<<<......<<......<<<<<<.....>>>>>>...>>....>>>>>..<<<<<<<<..<...<<<<.<<<<.<<..<<<<..<<<<..<<<........>>>......>>>>>>>>..>>..>>>>.>>>>...>....>>>>>>>>.<<<<<<<<<<<<<....>>>..>>>>>>>>>>..<<<<<<..<<<<<<<..>>>>>>>.>>>.>>>........ ..[<.((((({..(((((((((((..((((.......)))).((((.(((..[[.[[)))..))))...((....((((..((((.((((((....))))))))))...>}..))))...))...(((((((((((...........(((((.....[(((..(((((....(((..((((.]......))))...))).....]].]].....)))))..))).{.))))))))))...))))))...))))))))).))...])))))(...(((((((((((()))).((....))...))))))))...)......((((.(....((......((((((.....))))))...))...)))))...((((((((......((((.((((.((..((((..((((..(((........)))......))))))))..))..)))).))))........)))))))).(((((((((((((....)))..))))))))))..((((((..(((((((()))))))).))).)))...}.... Structure of a group II intron ribonucleoprotein in the pre-ligation (pre-2F) state; Intron 8t2s B 551 3.0 RF00029 URS00029156CC_39491 37993708 0000373 39491 gagcucauuucuuuguuugcgcgccaugggcgcgcucuaacggguguaagucccgaacaugcccagguagugggaaauguauagccgaacagcaagggugucuacugugagguggaaucugaaggaagcuguaagcgaaucucugguccgacggacagaaaucgcauauaaggcuaggcuucugauaagcuggcaaagaacagugaagucuaauaacuaagcagaguaaaugcggcggauauauggagagaaagagcgugcaccuuaagcguggaggucucacagagguuagccuaguaacaacgaacugugagaagucagccgagcccauaguagugaagaagucucuguaauggggauggagcgaaggggcgaacaaucaauaaugucucguauugcagaaaugacaacaucugccguaaccaaucggguaaaagguggucaaaucaagcgagacggaaaggaauugauugaaccgccguauacggaaccguacguacgguggugugagaggucggaauuucucaauuaagagaaauucuuccuacucg <<..>>....((((.....<<<<<...<<<<<<<<<<<..<<<<.......>>>>.<<<<.<<<.....[[>>>..>>>>...<<....<<<<..<<<<.<<<<<<....>>>>>>>>>>.......>>>>...>>...<<<<<<<<<<<...........<<<<<......<<<..<<<<..<<<..<<<<..))))..>>>>...>>>.....]].>>>>..>>>...>>>>>>>>>>...>>>>>>...>>>>>>>>>.>>....>>>>>...<<<<<<<<<<<<<..>>>>.<......>...>>>>>>>>..>.......<<<<......<<......<<<<<<.....>>>>>>...>>....>>>>...<<<<<<<.....<.<<<<.<<<<.<<..<<<<..<<<<<.<<<........>>>.....>>>>>>>>>..>>..>>>.>>>>>.>.....>>>>>>>.<<<<<<<<<<<<<....>>>..>>>>>>>>>>..<<<<<<..<<<<<<<<<<......>>>>>>>>>>.>>>.>>>. ........[.[[[[..{{.((((([..(((((((((((..((((.......))))...((.(((.......)))..)).....((....((((..((((<((((((....))))))))))...}]..))))...))...(((((((((((.(.....)...(((((.....[(((..((((..((...((((.]]]]]].))))....))........))))..)))...))))))))))...))))))...))))))))).))...})))))(...((((((((((((())))).((....))...))))))))...)......((((.(....((......((((((.....))))))...))...)))))...(((((((.......((((.((((.((..((((..(((((.(((........))).....)))))))))..))..)))).)))).......))))))).(((((((((((((....)))..))))))))))..((((((.>((((((((((......)))))))))).))).))). Structure of a group II intron ribonucleoprotein in the pre-branching (pre-1F) state; RNA (551-MER) 8t2t B 537 3.0 RF00029 URS0002617790_39491 37993708 0000373 39491 guuugcgcgccaugggcgcgcucuaacggguguaagucccgaacaugcccagguagugggaaauguauagccgaacagcaagggugucuacugugagguggaaucugaaggaagcuguaagcgaaucucugguccgacggacagaaaucgcauauaaggcuaggcuucgugauaagcuggcaaagaacagugaagucuaauaacuaagcagaguaaaugcggcggauauauggagagaaagagcgugcaccuuaagcguggaggucucacagagguugccuaguaacaacgaacugugagaagucagccgagcccauaguagugaagaagucucuguaauggggauggagcgaaggggcgaacaaucauaaugucucguauugcagaaaugacaacaucugccguaaccaaucggguaaaagguggucaaaucaagcgagacggaaaggauugauugaaccgccguauacggaaccguacguacgguggugugagaggucggaauuucucaauuaagagaaauucuuccuacucgau .....<<<<<...<<<<<<<<<<<..<<<<.......>>>>.<<<<.<<<....(((>>>..>>>>...<<....<<<<..<<<<.<<<<<<....>>>>>>>>>>.......>>>>...>>...<<<<<<<<<<<...........<<<<<......<<<..<<<<...<<<..<<<<........>>>>...>>>.....)))>>>>..>>>...>>>>>>>>>>...>>>>>>...>>>>>>>>>.>>....>>>>>...<<<<<<<<<<<<<.>>>>.<......>...>>>>>>>>..>....<..<<<<......<<......<<<<<<.....>>>>>>...>>....>>>>>..<<<<<<...<.<.<<<<.<<<<.<<..<<<<..<<<<...<<........>>.......>>>>>>>>..>>..>>>>.>>>>..>>...>>>>>>.<<<<<<<<<<<<<....>>>..>>>>>>>>>>..<<<<<<..<<<<<<<<<<......>>>>>>>>>>.>>>.>>>... ..[<.(..(({..(((((((((((..((((.......)))).((((.(((....[.[)))..))))...((....((((..((((.((((((....))))))))))...>}..))))...))...(((((((((((.(.....)...(((((.....[(((..((((...(((..((((.]......))))...))).....].]))))..)))...))))))))))...))))))...))))))))).))...]))..)(...((((..((((((.)))).((....))...))..))))...)(.....((((.(....((......((((((.....))))))...))...)))))...((((((.....(..(((.((((.((..((((..((((..(............)......))))))))..))..)))).)))...)....)))))).(((((((((((((....)))..))))))))))..((((((..((((((((((......)))))))))).))).)))..) Structure of a group II intron ribonucleoprotein in the post-ligation (post-2F) state; RNA (537-MER) 8t2x tP 75 2.46 RF00005 URS00021ED942_559292 0030533 0006412 4932 agcgccgugacgcaguggaagcgcgcagggcucauaacccugauguccucggaucgaaaccgagcggcgcuacca <<<<<<<...<<<.......>>>.<<<<<<.......>>>>>.>...<<<<<.......>>>>>>>>>>>>.... (((((((...(((....[..)))..(((((.......))))).....(((((..]....)))))))))))).... Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, A-site tRNA, messenger RNA and eIF5A, PRE; P site tRNA 8t2y tP 75 2.2 RF00005 URS00021ED942_559292 0030533 0006412 4932 agcgccgugacgcaguggaagcgcgcagggcucauaacccugauguccucggaucgaaaccgagcggcgcuacca <<<<<<<...<<<.......>>>.<<<<<<.......>>>>>.>...<<<<<.......>>>>>>>>>>>>.... (((((((...(((....[..)))..(((((.......))))).....(((((..]....)))))))))))).... Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, PRE; P site tRNA 8t2z tP 75 2.4 RF00005 URS00021ED942_559292 0030533 0006412 4932 agcgccgugacgcaguggaagcgcgcagggcucauaacccugauguccucggaucgaaaccgagcggcgcuacca <<<<<<<...<<<.......>>>.<<<<<<.......>>>>>.>...<<<<<.......>>>>>>>>>>>>.... (((((((...(((.......)))..(((((.......))))).....((((.........))))))))))).... Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, POST; P site tRNA 8tjq N 433 3.4 RF00028,RF00028 URS0002915699_32630 37791881 0000372 32630 gggucaggccggcugauauggaugcaguucacagacuaaaugucggucggggaagauguauucuucucauaagauauagucggaccucuccuuaaugggagcuagcggaugaagugaugcaacacuggagccgcugggaacuaauuuguaugcgaaaguauauugauuaguuuuggagaaguuaucaggcaugcaccugguagcuagucuuuaaaccaauagauugcaucgguuuaaaaggcaagaccgucaaauugcgggaaaggggucaacagccguucaguaccaagucucaggggaaacuuugagauggccuugcaaaggguaugguaauaagcugacggacaugguccuaaccacgcagccaaguccuaagucagucgccacaguuuggggaaagcugugcagccuguaacccccccacgaaaguggg ....<<<<<<<<<<<<<..<<<<...<<.....<<<<<...{.(((((.<<<<<<<.....>>>>>>>........>>>>>......<<<<<....>>>>><<<<<<<.(..<<<<<<<<<<>>>>...)>>>>>>>.<<<<<<<<.<<<<<......>>>>>.>>>>>>>>.......<<<<<<<<<<..[[[.>>>>>>>>>>.<<<<<<<<<<<......>>>>>>.>>>>>>.>>>>>..))))).}....<<<<<<...<<<<<<.....<<<.<<<<.<<...<<<<<<<<<....>>>>>>>>>..<<..]]]..>>.....>>......>>>>>>>....>>>>>>..>>.>>>>>>...>>>>...>>>>>>>>.<<<<<...((((....>>>>>..>>>>>...))))<<<<<....>>>>> ....(((((((.(((((..((((...((...[.[[[[[...(.(((((.(((((((.....)))))))........]]]]]]...(.(((((....)))))(.(((((.(..(((([[[[[[))))...)))))).).(((((((..((((.(....).))))..)))))))..)....((((((((((..{{{.)))))))))).(((((((((((....(.]]]]]]))))))).)))))..))))).)....((((((...((((((.....(((.((((.(((..(((((((((....)))))))))..((..}}.}.))....)))......)))))))....))))))..)).))))))...))))...))))).)).(((((...[[[[....)))))..)))))...]]]](((((....))))) Tetrahymena Ribozyme scaffolded Zika Virus xrRNA; RNA (440-MER) 8tju A 409 3.46 RF00028,RF00028 37791881 0000372 161675 ggcaagguacggcauauggaugcaguucacagacuaaaugucggucggggaagauguauucuucucauaagauauagucggaccucuccuuaaugggagcuagcggaugaagugaugcaacacuggagccgcugggaacuaauuuguaugcgaaaguauauugauuaguuuuggagaaguuaucaggcaugcaccugguagcuagucuuuaaaccaauagauugcaucgguuuaaaaggcaagaccgucaaauugcgggaaaggggucaacagccguucaguaccaagucucaggggaaacuuugagauggccuugcaaaggguaugguaauaagcugacggacaugguccuaaccacgcagccaaguccuaagugccguaggggcuugagaacccccccuccccacuc <<...{{<<<<<<<<..<<<<...<<.....<<<<<...{.(((((.<<<<<<<.....>>>>>>>........>>>>>...((.<<<<<....>>>>><<<<<<<.(..<<<<<<<<<<>>>>...)>>>>>>>.<<<<<<<<.<<<<<......>>>>>.>>>>>>>>..))...<<<<<<<<<<..[[[.>>>>>>>>>>.<<<<<<<<<<<......>>>>>>.>>>>>>.>>>>>..))))).}....<<<<<<...<<<<<<.....<<<.<<<<.<<...<<<<<<<<<....>>>>>>>>>..<<..]]]..>>.....>>......>>>>>>>....>>>>>>..>>.>>>>>>...>>>>...>>>>>>>><<<<...(((...>>>>>>.}}...))) {{...(((((((((...((((...((...[.[[[[[...(.(((((.(((((((.....)))))))........]]]]]]..((.(((((....)))))(((((((....(((([[[[[[))))....))))))).(((((((..((((.(....).))))..)))))))..))...((((((((((..{{{.)))))))))).(((((((((((....(.]]]]]]))))))).)))))..))))).)....((((((...((((((.....(((.((((.(((..(((((((((....)))))))))..((..}}.}.))....)))......)))))))....))))))..)).))))))...))))....)))))))((((...[[[...))))}}.))...]]] Tetrahymena Ribozyme scaffolded TABV xrRNA; DNA/RNA (416-MER) 8tjv A 409 2.99 RF00028,RF00028 URS0002915687_32630 37791881 0000372 32630 gggcgaugaggcccgcccaaacugcccuauauggaugcaguucacagacuaaaugucggucggggaagauguauucuucucauaagauauagucggaccucuccuuaaugggagcuagcggaugaagugaugcaacacuggagccgcugggaacuaauuuguaugcgaaaguauauugauuaguuuuggaaaguuaucaggcaugcaccugguagcuagucuuuaaaccaauagauugcaucgguuuaaaaggcaagaccgucaaauugcgggaaaggggucaacagccguucaguaccaagucucaggggaaacuuugagauggccuugcaaaggguaugguaauaagcugacggacaugguccuaaccacgcagccaaguccuaaguagggcugauggccucuacug .((((..<<<<<<))))......<<<<<<<..<<<<...<<.....<<<<<...{.(((((.<<<<<<<.....>>>>>>>........>>>>>...(..<<<<<....>>>>><<<<<<<.(..<<<<<<<<<<>>>>...)>>>>>>>.<<<<<<<<.<<<<<......>>>>>.>>>>>>>>...)..<<<<<<<<<<..[[[.>>>>>>>>>>.<<<<<<<<<<<......>>>>>>.>>>>>.>>>>>>..))))).}....<<<<<<...<<<<<<.....<<<.<<<<.<<...<<<<<<<<<....>>>>>>>>>..<<..]]]..>>.....>>......>>>>>>>....>>>>>>..>>.>>>>>>...>>>>...>>>>>>>....>>>>>>..... .[[[[..((((((]]]]......(((((((..((((...((...[.[[[[[...(.(((((.(((((((.....)))))))........]]]]]]..((.(((((....)))))(((((((....(((([[[[[[))))....))))))).(((((((...(((((....)))))...)))))))..))..((((((((((..{{{.)))))))))).(((((((((((....(.]]]]]]))))))).)))))..))))).)....((((((...((((((.....(((.((((.(((..(((((((((....)))))))))..((..}}.}.))....)))......)))))))....))))))..)).))))))...))))...)))))))....))))))..... Tetrahymena Ribozyme scaffolded Fluoride riboswitch; RNA (417-MER) 8tjx N 365 2.44 RF00028,RF00028 URS0002915699_5890 37791881 0000372 5890 auauggaugcaguucacagacuaaaugucggucggggaagauguauucuucucauaagauauagucggaccucuccuuaaugggagcuagcggaugaagugaugcaacacuggagccgcugggaacuaauuuguaugcgaaaguauauugauuaguuuuggaggaaaaguuaucaggcaugcaccugguagcuagucuuuaaaccaauagauugcaucgguuuaaaaggcaagaccgucaaauugcgggaaaggggucaacagccguucaguaccaagucucaggggaaacuuugagauggccuugcaaaggguaugguaauaagcugacggacaugguccuaaccacgcagccaaguccuaagu <<..<<<<...<<.....<<<<<...{.(((((.<<<<<<<.....>>>>>>>........>>>>>...(..<<<<<....>>>>><<<<<<<....<<<<<<<<<<>>>>....>>>>>>>.<<<<<<<<.<<<<<......>>>>>.>>>>>>>>..).......<<<<<<<<<<..[[[.>>>>>>>>>>.<<<<<<<<<<<......>>>>>>.>>>>>>.>>>>>..))))).}....<<<<<<...<<<<<<.....<<<.<<<<.<<...<<<<<<<<<....>>>>>>>>>..<<..]]]..>>.....>>......>>>>>>>....>>>>>>..>>.>>>>>>...>>>>...>> ((..((((...((...[.[[[[[...(.(((((.(((((((.....)))))))........]]]]]]..(..(((((....)))))(((((((....(((([[[[[[))))....))))))).(((((((..((((.(....).))))..)))))))..).......((((((((((..{{{.)))))))))).(((((((((((....(.]]]]]]))))))).)))))..))))).)....((((((...((((((.....(((.((((.(((..(((((((((....)))))))))..((..}}.}.))....)))......)))))))....))))))..)).))))))...))))...)) Tetrahymena Ribozyme cryo-EM scaffold; RNA (440-MER) 8toz A 96 3.0 RF02680 39413212 0008616 853 nagcaaccuaggauuuuaggcuccccggcguguaccaugccgggccaaacccauagggcuggcggucccugugcggucagaauucauccgccggag ((((......<<<<<<...))))<<<<<<<<<...>>>>>>>>>....<<<<<<<<<<........>>>>>>>.>>>..>>>>>>........... [[[[......((((((...]]]](((((((((...)))))))))....((((((((((........))))))).)))..))))))........... Class III PreQ1 riboswitch double mutant U8C/A85G; Class-III preQ1 riboswitch 8tpu S7 74 4.1 RF00005 URS000035398D_36329 0030533 0006412 36329 ggguaauuggcgcaguugguuagcgcgcgggucucauaaucccgaggucgugaguucgauccucacauuaccca .<<<.....<<...........>><.<..<......>..>.>....<..<.........>..>...>>>..... ((.(.....((..(......).))(................)....(...(.......)....)..).)..).. Subtomogram averaged consensus structure of the malarial 80S ribosome in Plasmodium falciparum-infected human erythrocytes; 60S ribosomal protein L24, putative 8ud6 1w 72 2.7 RF00005 URS00005AA258_562 38359125 0030533 0006412 562 gcccgganagcucaggguagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcac <<<<<<<..<<<<......>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.. .((((((..((((...[..)))).((((.........)))).....(((((..]....)))))))))))... Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution; A- and E-site Deacylated tRNAphe 8ud6 2w 70 2.7 RF00005 URS00005AA258_562 38359125 0030533 0006412 562 cccgganagcucagggagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcac <<<<<<..<<<<.....>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>... ((((((..((((...[.)))).((((.........)))).....(((((..]....)))))))))))... Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution; A- and E-site Deacylated tRNAphe 8ud7 1w 72 2.55 RF00005 URS00005AA258_562 38359125 0030533 0006412 562 gcccgganagcucaggguagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcac .<<<<<<..<<<<......>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>... .((((((..((((...[..)))).((((.........)))).....(((((..]....)))))))))))... Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution; A- and E-site Deacylated tRNAphe 8ud7 2w 69 2.55 RF00005 URS00005AA258_562 38359125 0030533 0006412 562 cccgganagcucagggagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggca <<<<<<..<<<<.....>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>.. ((((((..((((...[.)))).((((.........)))).....(((((..]....))))))))))).. Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution; A- and E-site Deacylated tRNAphe 8ud8 2w 72 2.6 RF00005 URS00005AA258_562 38359125 0030533 0006412 562 cccgganagcucagggagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<..<<<<.....>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((...[.)))).((((.........)))).....(((((..]....)))))))))))..... Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution; A- and E-site Deacylated tRNAphe 8uo6 A 134 2.85 RF00036,RF00005 38760344 0005515,0030533 0051169 0005634 672471 gcccggauagcucagucgguagagcagcgggcacuaugggcgcagugucaauggacgcugacgguacaggccagacaauuauugucugguauagugcccgcggguccaggguucaagucccuguucgggcgcca <<<<<<<..<<<<........>>>>.<<<<<<<<<<<...<<<<<<<<<....>>>>>>>.>>......<<<<<<<<<...>>>>>>>>>>>>>>>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).(((((((((((...(((((((((....))))))).)).......(((((((.....))))))).))))))))))).....(((((..]....)))))))))))).... HIV-1 Rev Response Element (RRE) Stem-Loop II (SLII); HIV-1 Rev Response Element Stem-Loop II with tRNA scaffold 8uo6 B 134 2.85 RF00036,RF00005 38760344 0005515,0030533 0051169 0005634 672471 gcccggauagcucagucgguagagcagcgggcacuaugggcgcagugucaauggacgcugacgguacaggccagacaauuauugucugguauagugcccgcggguccaggguucaagucccuguucgggcgcca <<<<<<<..<<<<........>>>>.<<<<<<<<<<<...<<<<<<<<<....>>>>>>>.>>......<<<<<<<<.....>>>>>>>>>>>>>>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[..)))).((((((((((((..(.(((((((....)))))))..).)....((((((((.....))))))))))))))))))).....(((((..]....)))))))))))).... HIV-1 Rev Response Element (RRE) Stem-Loop II (SLII); HIV-1 Rev Response Element Stem-Loop II with tRNA scaffold 8upy C 72 2.8 RF00005 URS0000BC466B_192952 38100361 0030533 0006412 2209 ggaaaccugaucauguagaucgaauggacucuaaauccguucagccggguuagauucccgggguuuccgcca <<<<<<<.<<<.......>>>..<<<<<.......>>>>.>...<<<<<.......>>>>>>>>>>>>.... ((.(((...((.......))...(((((.......))))).....((((.......))))..))).)).... Methanosarcine mazei tRNAPyl in A-site of ribosome; RNA (72-MER) 8ut0 n 75 3.22 RF00005 URS00021ED942_559292 39900920 0030533 0006412 4932 agcgccgugacgcaguggaagcgcgcagggcucauaacccugauguccucggaucgaaaccgagcggcgcuacca <<<<<<<...<<<.......>>>.<<<<<<.......>>>>>.>...<<<<<.......>>>>>>>>>>>>.... (((((((...(((....[..)))..(((((.......))))).....(((((..]....)))))))))))).... Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA; P site initiator tRNA 8uti n 75 3.13 RF00005 URS00002CB170_4932 39900920 0030533 0006412 4932 agcgccguggcgcaguggaagcgcgcagggcucauaacccugauguccucggaucgaaaccgagcggcgcuacca <<<<<<<..<<<<.......>>>><<<<<<.......>>>>>.>...<<<<<.......>>>>>>>>>>>>.... (((((((..((((....[..)))).(((((.......))))).....(((((..]....)))))))))))).... Eukaryotic 80S ribosome with Reh1 and A/P site tRNA; P site initiator tRNA 8uvr 2w 72 2.6 RF00005 URS00005AA258_562 38165935 0030533 0006412 562 cccgganagcucagggagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<..<<<<.....>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((...[.)))).((((.........)))).....(((((..]....)))))))))))..... Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with spectinomycin, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.60A resolution; A-site and E-site Deacylated tRNAphe 8uvs 2w 72 2.75 RF00005 URS00005AA258_562 38165935 0030533 0006412 562 cccgganagcucagggagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<..<<<<.....>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((...[.)))).((((.........)))).....(((((..]....)))))))))))..... Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with spectinomycin derivative 2694, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.75A resolution; A-site and E-site Deacylated tRNAphe 8uye A 135 5.9 RF03117 URS00029156BA_694008 38427602,38076883 0039694 694008 ggagcaucgugucucaagugcuucacggucacaauauaccguuucgucgggugcguggcaauucggugcacaucaugucuuucguggcugguguggcuccucaaggugcgaggggcaaguauagagcagagcucc <<<<<.<<.<<.<<<..<<<<<<<<<.<<<<<..<<<.<<<......>>>>>>.>>>>>......>>><<<<<<<.<<<......>>>>>>>>>><<<<<<<.......>>>>>>>>>>>>>.>>>>>>>>>>>> (((((.((.((.(((..(((((((((((((((..(((.(((......)))))).)))))....).)))(((((((.(((......))))))))))(((((((.......))))))))))))).)))))))))))) BtCoV-HKU5 5' proximal stem-loop 5, conformation 1; BtCoV-HKU5 5' proximal stem-loop 5 8uyg A 135 6.4 RF03117 URS00029156BA_694008 38427602,38076883 0039694 694008 ggagcaucgugucucaagugcuucacggucacaauauaccguuucgucgggugcguggcaauucggugcacaucaugucuuucguggcugguguggcuccucaaggugcgaggggcaaguauagagcagagcucc <<<<<.<<.<<.<<<..<<<<<<<<<<<<<<<..<<<.<<<......>>>>>>.>>>>>....>>.>><<<<<<<.<<<......>>>>>>>>>><<<<<<<.......>>>>>>>>>>>>>.>>>>>>>>>>>> (((((.((.((.(((..(((((((((((((((..(((.(((......)))))).)))))....)).))(((((((.(((......))))))))))(((((((.......))))))))))))).)))))))))))) BtCoV-HKU5 5' proximal stem-loop 5, conformation 2; RNA (135-MER) 8uyj A 135 7.3 RF03117 URS00029156BA_694008 38427602,38076883 0039694 694008 ggagcaucgugucucaagugcuucacggucacaauauaccguuucgucgggugcguggcaauucggugcacaucaugucuuucguggcugguguggcuccucaaggugcgaggggcaaguauagagcagagcucc <<<<<.<<.<<.<<<..<<<<<<<<<.<<<<<..<<<.<<<......>>>>>>.>>>>>......>>><<<<<<<.<<<......>>>>>>>>>><<<<<<<.......>>>>>>>>>>>>>.>>>>>>>>>>>> (((((.((.((.(((..(((((((((((((((..(((.(((......)))))).)))))....).)))(((((((.(((......))))))))))(((((((.......))))))))))))).)))))))))))) BtCoV-HKU5 5' proximal stem-loop 5, conformation 4; BtCoV-HKU5 5' proximal stem-loop 5, conformation 4 8uyk A 135 6.9 RF03117 URS0002915673_1335626 38427602,38076883 0039694 1335626 ggagcgucgugucucuuguacgucucggucacaauacacgguuucguccggugcguggcaauucggggcacaucaugucuuucguggcuggugugaccgcgcaaggugcgcgcgguacguaucgagcagcgcucc <<<<<<<..<<.<<<..<<<<<<<<<.<<<<<..<<<.<<<......>>>>>>.>>>>>......>>><<<<<<<.<<<......>>>>>>>>>><<<<<<<.......>>>>>>>>>>>>>.>>>>>>>>>>>> (((((((..((.(((..(((((((((((((((..(((.(((......)))))).)))))....).)))(((((((.(((......)))))))))).((((((.......)))))).)))))).)))))))))))) MERS 5' proximal stem-loop 5, conformation 1; MERS 5' proximal stem-loop 5 8uyl A 135 6.4 RF03117 URS0002915673_1335626 38427602,38076883 0039694 1335626 ggagcgucgugucucuuguacgucucggucacaauacacgguuucguccggugcguggcaauucggggcacaucaugucuuucguggcuggugugaccgcgcaaggugcgcgcgguacguaucgagcagcgcucc <<<<<<<..<<.<<<..<<<<<<<<<.<<<<<..<<<.<<<......>>>>>>.>>>>>......>>><<<<<<<.<<<......>>>>>>>>>><<<<<<<.......>>>>>>>>>>>>>.>>>>>>>>>>>> (((((((..((.(((..(((((((((.(((((..(((.(((......)))))).)))))......)))(((((((.(((......))))))))))(((((((.......))))))))))))).)))))))))))) MERS 5' proximal stem-loop 5, conformation 2; MERS 5' proximal stem-loop 5 8uym A 135 6.4 RF03117 URS0002915673_1335626 38427602,38076883 0039694 1335626 ggagcgucgugucucuuguacgucucggucacaauacacgguuucguccggugcguggcaauucggggcacaucaugucuuucguggcuggugugaccgcgcaaggugcgcgcgguacguaucgagcagcgcucc <<<<<<...<<.<<<..<<<<<<<<<..<<<<..<<<.<<<......>>>>>>.>>>>.......>>><<<<<<<.<<<......>>>>>>>>>><<<<<<<.......>>>>>>>>>>>>>.>>>>>.>>>>>> ((((((...((.(((..((((((((..(((((..(((.(((......)))))).))))).......))(((((((.(((......))))))))))(((((((.......))))))))))))).))))).)))))) MERS 5' proximal stem-loop 5, conformation 3; MERS 5' proximal stem-loop 5 8uyp A 143 7.1 RF03120,RF03117 URS0002915698_227984 38427602,38076883 0039694 227984 gguugacaagaaacgaguaacucgucccucuucugcagacugcuuacgguuucguccguguugcagucgaucaucagcauaccuagguuucguccgggugugaccgaaagguaagauggagagccuuguucuuggugucaacc <<<<<<<<<<<.<<<<<...<<<.<<<.<<<<<<<..<<<<<<.<<<<<......>>>>>..>>>>>>......>>><<<<<<<.<<......>>>>>>>>><<<....>>>>>>>.>>>>>>.>>>>>>>>>>...>>>>>> (((((((((((.(((((...(((.(((.(((((((.(((((((.(((((......)))))..)))))).....))))(((((((.((......)))))))))(((....))))))).)))))).))))))))))...)))))) SARS-CoV-1 5' proximal stem-loop 5; SARS-CoV-1 5' proximal stem-loop 5 8uys A 124 4.7 RF03120,RF03117 URS00029156BB_2697049 38427602,38076883 0039694 2697049 ggacacgaguaacucgucuaucuucugcaggcugcuuacgguuucguccguguugcagccgaucaucagcacaucuagguuucguccgggugugaccgaaagguaagauggagagccuuguccc <<<<..<<<...<<<.<<<<<<<<<<<..<<<<<<.<<<<<......>>>>>..>>>>>>......>>><<<<<<<.<<......>>>>>>>>><<<....>>>>>>>>>>>>>>.>>>>>>>. (((((..((...(((.(((((((((((..((((((..((((......))))...))))))......)))(((((((.((......)))))))))(((....)))))))))))))).))))))). SARS-CoV-2 5' proximal stem-loop 5; SARS-CoV-2 RNA SL5 domain. 8v9j y 74 3.1 RF00005 URS00005AA258_246196 38355796 0030533 0006412 246196 gcccgganagcucaggguagagcaggggauugaaaauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<......>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((...[..)))).((((.........)))).....((.((..]....)).))))))))).... Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) (Structure 4); pe/E deacylated phenylanaline-tRNA 8v9k y 74 3.1 RF00005 URS00005AA258_246196 38355796 0030533 0006412 246196 gcccgganagcucaggguagagcaggggauugaaaauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<......>>>><<<<<<<.....>>>>>>.>...<<<<<.......>>>>>>>>>>>>.... (((((((..((((...[..)))).((((.........)))).....((.((..]....)).))))))))).... Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Rv2629 (Balon) (Structure 5); pe/E deacylated phenylanaline-tRNA 8v9l y 74 3.0 RF00005 URS00005AA258_246196 38355796 0030533 0006412 246196 gcccgganagcucaggguagagcaggggauugaaaauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<<..<<<<......>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((...[..)))).((((.........)))).....((.((..]....)).))))))))).... Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) and MsmegEF-Tu(GDP) (Composite structure 6); pe/E deacylated phenylanaline-tRNA 8vci A 118 6.1 RF00507 URS0002915679_2697049 38727003 0075523 2697049 gggaacccaugcuucagucagcugaugcacaaucguuuuuaaacggguuuccgguguaagugcagcccgucuuacaccgugcggcacaggcacuaguacugaugucguauacagggcu <<<<<<<<.<<<.<<<<....>>>>.>>>.....<<<...>.>>>>>>>>>><<<<<<<<.<.(((((.>>>>>>>>><<<<<<<<<<<..<....>.>>>.>>>>>>>>...))))) ((((((((.(((.((((....)))).))).....(((....)))))))))))((((((((.(([[[[[))))))))))(((((((((((..((..)).))).))))))))...]]]]] SARS-CoV-2 Frameshift Stimulatory Element with Upstream Multibranch Loop; Frameshift Stimulatory Element with Upstream Multi-branch Loop 8vm8 R 93 1.54 RF00386 39036953 0039689 32630 gguaaaacagccuguggguugaucccacccacagggcccauugggcgcuagcacucugguaugaaacacguaccuuugugcgccuguuuuacc <<<<<<<<<<<<<<<<<<<.......>>>>>>>>><<<<...>>>><...<<<<...<<<<<<.....>>>>>>...>>>>.>>>>>>>>>>> (((((((((((((((((((.......)))))))))((((...))))((..((((...((((((.....))))))...)))))))))))))))) The crystal structure of coxsackievirus B3 RNA replication element sD-loop mutant in complex with Fab BL3-6; RNA (93-MER) 8vm9 R 85 2.2 RF00386 39036953 0039689 32630 ggaaacagcggauggguaucccaccauucgacccauuggguguaguacucugguacgaaacacguaccuuuguacgccuguuucc <<<<<<<<<<<<<<<........>>>>>>><<<<...>>>><<.<<<<...<<<<<<.....>>>>>>...>>>>>>>>>>>>>> (((((((((((((((........)))))))((((...))))((.((((...((((((.....))))))...)))))))))))))) The crystal structure of rhinovirus B14 RNA replication element sD-loop mutant in complex with Fab BL3-6; RNA (85-MER) 8vm9 C 85 2.2 RF00386 39036953 0039689 32630 ggaaacagcggauggguaucccaccauucgacccauuggguguaguacucugguacgaaacacguaccuuuguacgccuguuucc <<<<<<<<<<<<<<<........>>>>>>><<<<...>>>><<.<<<<...<<<<<<.....>>>>>>...>>>>>>>>>>>>>> (((((((((((((((........))))))).(((...))).((.((((...((((((.....))))))...)))))))))))))) The crystal structure of rhinovirus B14 RNA replication element sD-loop mutant in complex with Fab BL3-6; RNA (85-MER) 8vma C 88 2.54 RF00386 39036953 0039689 32630 ggaaacuggguauagguuguucccaccuguaccacccacgugguguagugcuccuguaugaaacacguacacuugcacgccaguuucc <<<<<<<<<<<<<<<<<.......>>>>>>>>><<<.....>>><<.<<<<...<<<<<<.....>>>>>>...>>>>>>>>>>>>>> ((((((((((((((((..(..)...))))))))((((..).)))((.((((...((((((.....))))))...)))))))))))))) The crystal structure of rhinovirus C15 RNA replication element sD-loop mutant in complex with Fab BL3-6; RNA (88-MER) 8vma R 88 2.54 RF00386 39036953 0039689 32630 ggaaacuggguauagguuguucccaccuguaccacccacgugguguagugcuccuguaugaaacacguacacuugcacgccaguuucc <<<<<<<<<<<<<<<<.........>>>>>>>><<<.....>>><<.<<<<...<<<<<<.....>>>>>>...>>>>>>>>>>>>>> ((((((((((((((.(.........).))))))((((..).)))((.((((...((((((.....))))))...)))))))))))))) The crystal structure of rhinovirus C15 RNA replication element sD-loop mutant in complex with Fab BL3-6; RNA (88-MER) 8vmb R 83 2.97 RF00386 39036953 0039689 32630 ggaaacuggguauaggugaaacacaccuguaccacccacgugguguagugcuccuguauugguacacuugcacgccaguuucc <<<<<<<<<<<<<<<<<<.....>>>>>>>>>><<<.....>>><<.<<<<...<<<<<..>>>>>...>>>>>>>>>>>>>> ((((((((((((((((((.....))))))))))((((..).)))((.((((...((((.().))))...)))))))))))))) The crystal structure of rhinovirus C15 RNA replication element sB-loop mutant in complex with Fab BL3-6; RNA (83-MER) 8vpv A 100 3.04 RF02680 39413212 0008616 853 nagcaacuuaggauuuuaggcuccccggcgugucucgaaccaugccgggccaaacccauagggcuggcggucccugugcggucaaauucauccgccggag ((((..((...<<<<<.))))))<<<<<<<<<........>>>>>>>>>....<<<<<<<<<<........>>>>>>>.>>>.>>>>>............ [[[[......((((((...]]]](((((((((........)))))))))....((((((((((........))))))).))).))))))........... Class III PreQ1 riboswitch mutant delta84; RNA (101-MER) 8vs9 ATRN 76 3.9 RF00005 URS00005F0912_562 38500588 0030533 0006412 562 ggggcuauagcucagcugggagagcgccugcuuugcacgcaggaggucugcgguucgaucccgcauagcuccacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... ((.((((..((((.....[..)))).(((((.......))))).....(((((..]....))))))))).)).... Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome; A-tRNA 8vs9 TMRN 363 3.9 RF00023 URS000037602E_562 38500588 0006401 562 ggggcugauucuggauucgacgggauuugcgaaacccaaggugcaugccgaggggcgguuggccucguaaaaagccgcaaaaaauagucgcaaacgacgaaaacuacgcuuuagcagcuuaauaaccugcuuagagcccucucucccuagccuccgcucuuaggacggggaucaagagaggucaaacccaaaagagaucgcguggaagcccugccugggguugaagcguuaaaacuuaaucaggcuaguuuguuaguggcguguccguccgcagcuggcaagcgaauguaaagacugacuaagcauguaguaccgaggauguaggaauuucggacgcggguucaacucccgccagcuccacca <<<<<<<.............<<<<<<<<.......<...<<<..<<<<......<<<<<..............>>>>>.............................<<<<<<<<<<.........>>>>.>>>>>><<<<<<<<<<<.......[(((((.....>>>>....>>>>>>>..........))))).].<<<.....<<<...((...>>>.....>>>.............))......<<<<....<<...((.....>>....>>>>................))....>>>>.....>>>...>......>>>>>>>>.....<<<.......>>>..>>>>>>>.... (((((((......[......((..((((.......(...((...((((.[.[..((((....]..]........)))).............................((((((.(((.........)))..))))))((((((.(((....(....[[[[[.)....))).....))))))..........]]]]]....((....((((...[[[..))))....)).............]]].......((...(.(....[[......))....)).................]]....))))......))...)......))))..)).....(((..]....)))..))))))).... Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome; TMRN 8vsa TMRN 363 3.7 RF00023 URS000037602E_562 38500588 0006401 562 ggggcugauucuggauucgacgggauuugcgaaacccaaggugcaugccgaggggcgguuggccucguaaaaagccgcaaaaaauagucgcaaacgacgaaaacuacgcuuuagcagcuuaauaaccugcuuagagcccucucucccuagccuccgcucuuaggacggggaucaagagaggucaaacccaaaagagaucgcguggaagcccugccugggguugaagcguuaaaacuuaaucaggcuaguuuguuaguggcguguccguccgcagcuggcaagcgaauguaaagacugacuaagcauguaguaccgaggauguaggaauuucggacgcggguucaacucccgccagcuccacca <<<<<<<.............<<<<<<<<.......<<..<<<..<<<<.......<<<................>>>..............................<<<<<<<<<<.........>>>>.>>>>>><<<<<<.<<<<.......[.((((.....>>>>.....>>>>>>..........))))..].((((....(((...<<<<<)))....))))..........>>>>>......<<<<....<<...((..(..>>....>>>>.............)..))....>>>>.....>>>..>>......>>>>>>>>.....<<<.......>>>..>>>>>>>.... (((((((......[.......(.(((((.......(...((...((((.[.....(((.......]........)))..............................((((((.(((.........)))..))))))(.((((.(((....(...[..[[[.)....))).....)))).)..........]]]...]..((.....(((...[[...))).....))..............]].......(....(.(....[[......)).....).................]]....))))......))...)......))))).)......(((..]....)))..))))))).... Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site of E. coli 70S ribosome; TMRN 8vsa ATRN 76 3.7 RF00005 URS00005F0912_562 38500588 0030533 0006412 562 ggggcuauagcucagcugggagagcgccugcuuugcacgcaggaggucugcgguucgaucccgcauagcuccacca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... ((.((((..((((.....[..)))).(((((.......))))).....((.((..]....)).)))))).)).... Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site of E. coli 70S ribosome; A-tRNA 8vtu 1x 77 2.4 RF00005 URS000041AF00_562 39039256 0030533 0006412 562 cgcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaaccn .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-66, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution; Aminoacylated fMet-tRNAmet 8vtu 2x 77 2.4 RF00005 URS000041AF00_562 39039256 0030533 0006412 562 cgcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaaccn .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-66, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution; Aminoacylated fMet-tRNAmet 8vtv 1x 77 2.55 RF00005 URS000041AF00_562 39039256 0030533 0006412 562 cgcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaaccn .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-91, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.55A resolution; Aminoacylated fMet-tRNAmet 8vtv 2x 77 2.55 RF00005 URS000041AF00_562 39039256 0030533 0006412 562 cgcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaaccn .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-91, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.55A resolution; Aminoacylated fMet-tRNAmet 8vtx 1x 77 2.4 RF00005 URS000041AF00_562 39039256 0030533 0006412 562 cgcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaaccn .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with macrolone MCX-128, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution; Aminoacylated fMet-tRNAmet 8vtx 2x 77 2.4 RF00005 URS000041AF00_562 39039256 0030533 0006412 562 cgcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaaccn .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with macrolone MCX-128, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution; Aminoacylated fMet-tRNAmet 8w2o R 327 3.49 RF00488 38688558 0030627 0000395 0005685 559292 accuuaagauaucagaggaaaguccuacugaucaaacaugcgcuuccaauaguagaaggacguuaagcauuuaucauugaacuguucauugaagucauugaugcaaacuccuuggucacacacacauacggcgcggaaggcguguuugcugacguuuccauucccuuguuucaaucauugguuaaacugauuuuuggggcccuuuguuucuucugccuggagaaguuugacaccaaauucaaauugguguuaggggagcuggggccuuucaaaaaaauuuuggaaggucuugguaggaacggguggaucuuauaauuuuugauuuau .....<<<<.<<<<<<<<.....>>>.>>>>><<<<<<<<<.<<<<<........<<<<<.<<<..<<<<.<.<<<.<<<<<.>>>>>.>>>.......>>>>>.>>>>>>>>.....................>>>>>>>>>>>>>><<<.<<<<.<<..<<<<<.<<<<<<<..<<<<<<<.>>>>>>>..>>>>>>>((.......<<<<<....))>>>>>...<<<<<<<<.<....>>>>>>>>>.>>>>><<<<<<<<<<<<<<<<<...>>>>>>>>>>>>>>>>>.>>>>>>..>>>.>>>>................ .....((((((((((((((...)))).)))))((((((((([(((((.[......(((((.(((..(((((..(((.((((...)))).))).......))))).)))))))).(](..............]))))))))))))))))(((.((((.((..(((((((((((((..(((((((.)))))))..)))))))[[.......(((((....]])))))...((((((.(.(....).)))))))))))))((((((.((((.(((((...))))).)))).)))))).))))))..))))))))................ Yeast U1 snRNP with humanized U1C Zinc-Finger domain; U1 snRNA 8xi2 B 86 2.6 RF00020 39415054 0000244,0000353 0005682,0046540 3055 gacgagcugaacgcgaauaucucuuucgccuuuuacuaaagagauccgcgaguuuugcucacgcagucgcaucuuuuuguggggcu .....<..<..<<<....<<<<<<<<.<.......>.>>>>>>>>..>>>..>..>.............................. ...(....(..((.....((((((((.(.......).))))))))...))..)......).......................... Cryo-EM structure of the Chlamydomonas C* complex; U5 snRNA 8xi2 F 92 2.6 RF00026 39415054 0030621 0000244,0000353 0005688,0046540 3055 nugcuucggcacaacuguuaaaauuggaaaaauacagagaagauuagcauggccccugcgcaaggaugacacgcauaaaucgagaaaugguu <<<<....>>>>.....................................<<...<<<.....>>>....>>..................... ((((....)))).....................................((..((((.....)))..).))..................... Cryo-EM structure of the Chlamydomonas C* complex; U6 snRNA 8xi2 H 40 2.6 RF00004 39415054 0045131 0000348 0005686 3055 auaccuuucucggccuuuuggcucagaucauguguaguau ........................................ ........................................ Cryo-EM structure of the Chlamydomonas C* complex; U2 snRNA 8xu8 s 75 3.4 RF00005 URS00021ED942_559292 0030533 0006412 559292 agcgccgugacgcaguggaagcgcgcagggcucauaacccugauguccucggaucgaaaccgagcggcgcuacca <<<<<<<...<<<.......>>>..<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((...(((....[..)))..(((((.......))))).....(((((..]....)))))))))))).... State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferation; tRNA 8xu8 t 75 3.4 RF00005 URS00021ED942_559292 0030533 0006412 559292 agcgccgugacgcaguggaagcgcgcagggcucauaacccugauguccucggaucgaaaccgagcggcgcuacca <<<<<<<...<<<.......>>>..<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((...(((....[..)))..(((((.......))))).....(((((..]....)))))))))))).... State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferation; tRNA 8xze A 53 2.34 RF02977 38769061 0010468 41312 ngguguguaccguucaacucgucccagcuucgacugggacuacgggagcgccu <<<<<<...<<<<.......<<<<<<<......>>>>>>>.>>>>..>>>>>> ((((((...((((.......((((((((...).))))))).))))..)))))) Crystal structure of THF-II riboswitch with THF and soaked with Ir; RNA (53-MER) 8xzk A 53 2.58 RF02977 38769061 0010468 41312 ngguguguaccguucaacucgucccagcuucgacugggacuacgggagcgccu <<<<<<...<<<<.......<<<<<<<......>>>>>>>.>>>>..>>>>>> .(((((...((((.......((((((((...).))))))).))))..))))). Crystal structure of folE riboswitch; RNA (53-MER) 8xzl A 53 2.13 RF02977 38769061 0010468 41312 ngguguguaccguucaacucgucccagcuucgacugggacuacgggagcgccu <<<<<<...<<<<.......<<<<<<<......>>>>>>>.>>>>..>>>>>> ((((((...((((.......((((((((...).))))))).))))..)))))) Crystal structure of folE riboswitch with DHF; RNA (53-MER) 8xzm A 53 1.98 RF02977 38769061 0010468 41312 ngguguguaccguucaacucgucccagcuucgacugggacuacgggagcgccu <<<<<<...<<<<.......<<<<<<<......>>>>>>>.>>>>..>>>>>> ((((((...((((.......((((((((...).))))))).))))..)))))) Crystal structure of folE riboswitch with DHN; RNA (53-MER) 8xzn A 53 1.82 RF02977 38769061 0010468 41312 ngguguguaccguucaacucgucccagcuucgacugggacuacgggagcgccu <<<<<<...<<<<.......<<<<<<<......>>>>>>>.>>>>..>>>>>> ((((((...((((.......((((((((...).))))))).))))..)))))) Crystal structure of folE riboswitch with BH4; RNA (53-MER) 8xzo A 53 1.97 RF02977 38769061 0010468 41312 ngguguguaccguucaacucgucccagcuucgacugggacuacgggagcgccu <<<<<<...<<<<.......<<<<<<<......>>>>>>>.>>>>..>>>>>> ((((((...((((.......((((((((...).))))))).))))..)))))) Crystal structure of folE riboswitch with Guanine; RNA (53-MER) 8xzp A 53 2.18 RF02977 38769061 0010468 41312 ngguguguaccguucaacucgucccagcuucgacugggacuacgggagcgccu <<<<<<...<<<<.......<<<<<<<......>>>>>>>.>>>>..>>>>>> ((((((...((((.......((((((((...).))))))).))))..)))))) Crystal structure of folE riboswitch with 8-CH3 Guanine; RNA (53-MER) 8xzq A 53 1.83 RF02977 38769061 0010468 41312 ngguguguaccguucaacucgucccagcuucgacugggacuacgggagcgccu <<<<<<...<<<<.......<<<<<<<......>>>>>>>.>>>>..>>>>>> ((((((...((((.......((((((((...).))))))).))))..)))))) Crystal structure of folE riboswitch with 8-N Guanine; RNA (53-MER) 8xzr A 53 1.83 RF02977 38769061 0010468 41312 ngguguguaccguucaacucgucccagcuucgacugggacuacgggagcgccu <<<<<<...<<<<.......<<<<<<<......>>>>>>>.>>>>..>>>>>> ((((((...((((.......((((((((...).))))))).))))..)))))) Crystal structure of folE riboswitch with 8-NH2 Guanine; RNA (53-MER) 8xzw A 53 1.91 RF02977 38769061 0010468 41312 ngguguguaccguucaacucgucccagcuucgacugggacuacgggagcgccu <<<<<<...<<<<.......<<<<<<<......>>>>>>>.>>>>..>>>>>> ((((((...((((.......((((((((...).))))))).))))..)))))) Crystal structure of THF-II riboswitch with THF and soaked with Ir; RNA (53-MER) 8y0x E 80 3.3 RF00005,RF01852 URS00021ED8EE_9606 38698775 0030533 0006412 9606 guagucguggccgagugguuaaggcgauggaaauccauuggggucuccccgcgcagguucgaauccugccgacuacgcca <<<<<<<..<<<..........>>><<<<......>>>><<<<...>>>>..<<<<<.......>>>>>>>>>>>>.... (((((((..(((.(...[.)..))).((((....)))).(.((....)))..(((((..]....)))))))))))).... Dormant ribosome with SERBP1; EtRNA 8y6o B 109 3.38 RF00020 38484052 0000244,0000353 0005682,0046540 9606 acucugguuucucuucagaucgcauaaaucuuucgccuuuuacuaaagauuuccguggagaggaacaacucugaguccaauuuuuugaggccuugcuuuggcaaggcua <<<<..<<<<<<<<<<<........<<<<<<<<...........>>>>>>>>...>>>>>>>>>>>......>>>>............<<<<<<<<....>>>>>>>>. .(((..(((((((((((...((...((((((((...........)))))))).)))))))))))))......))).............((((((((....)))))))). Cryo-EM Structure of the human minor pre-B complex (pre-precatalytic spliceosome) U11 and tri-snRNP part; U5 snRNA 8y6o J 109 3.38 RF00618 38484052 0030624,0030627 0000244,0000395 0005690 9606 naaccauccuuuucuugggguugcuacuguccaaugagcgcauagugagggcaguacugcuaaccgcaucaacuagagcgcuuuauuuuggugcaauuuuuggaaaaau ........................<<<<<<<......<<.....>>...>>>>>>>.........<<<<<<<.<<<<<..>>>>>..>>>>>>>............... .......................(((((.((.....((.....))..)).))))).........(((((((.(((((())))))..)))))))............... Cryo-EM Structure of the human minor pre-B complex (pre-precatalytic spliceosome) U11 and tri-snRNP part; U4atac snRNA 8y6o K 44 3.38 RF00619 38484052 0030622,0030627 0000244,0000395 0005691 9606 guuagcacuccccuugacaaggauggaagaggcccugggccuga .............................<<<<<...>>>>>.. .............................((((((.)))))).. Cryo-EM Structure of the human minor pre-B complex (pre-precatalytic spliceosome) U11 and tri-snRNP part; U6atac snRNA 8y6o P 124 3.38 RF00548 38484052 0030627 0000395 0005692 9606 aaaaagggcuucugucgugaguggcacacguagggcaacauugcucugcgugcggaaucgacaucaagagauuucggaagcauaauuuuuugguauuugggcagcuggugauucccggcgcccu .......<<<<.<<<<......>>>><<<<<<<<<<<<..>>>>>>>>>>>><<<<<<<..........>>>>>>>.>>>>.................<<<<.<<<<<.<<.>>>>>>>>>>>. .......(((((((((......))))(((((((.((((..)))).)))))))(((((((..........)))))))))))).................((((.(((((.(...)))))))))). Cryo-EM Structure of the human minor pre-B complex (pre-precatalytic spliceosome) U11 and tri-snRNP part; U11 snRNA 8y7e H 50 4.66 RF00007 38484052 0045131 0000348 0005693 9606 augaguaaggaaaauaacgauucggggugacgcccgaagaauuuuugagc ....................<<<<<<......>>>>>>............ ....................((((((......))))))............ Cryo-EM Structure of the human minor pre-B complex (pre-precatalytic spliceosome) U12 snRNP part; U12 snRNA 8yld s 75 3.9 RF00005 URS00021ED942_559292 0030533 0006412 559292 agcgccgugacgcaguggaagcgcgcagggcucauaacccugauguccucggaucgaaaccgagcggcgcuacca <<<<<<<...<<<.......>>>..<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((...(((....[..)))..(((((.......))))).....(((((..]....)))))))))))).... State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation; tRNA 8yld t 75 3.9 RF00005 URS00021ED942_559292 0030533 0006412 559292 agcgccgugacgcaguggaagcgcgcagggcucauaacccugauguccucggaucgaaaccgagcggcgcuacca <<<<<<<...<<<.......>>>..<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((...(((....[..)))..(((((.......))))).....(((((..]....)))))))))))).... State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation; tRNA 8ylr t 75 3.9 RF00005 URS00021ED942_559292 0030533 0006412 559292 agcgccgugacgcaguggaagcgcgcagggcucauaacccugauguccucggaucgaaaccgagcggcgcuacca <<<<<<<...<<<.......>>>..<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((...(((....[..)))..(((((.......))))).....(((((..]....)))))))))))).... State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation; tRNA 8z70 t 75 3.2 RF00005 URS00021ED942_559292 0030533 0006412 559292 agcgccgugacgcaguggaagcgcgcagggcucauaacccugauguccucggaucgaaaccgagcggcgcuacca <<<<<<<...<<<.......>>>..<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((...(((....[..)))..(((((.......))))).....(((((..]....)))))))))))).... State 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decoding; tRNA 8z71 t 75 3.6 RF00005 URS00021ED942_559292 0030533 0006412 559292 agcgccgugacgcaguggaagcgcgcagggcucauaacccugauguccucggaucgaaaccgagcggcgcuacca <<<<<<<...<<<.......>>>..<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((...(((....[..)))..(((((.......))))).....(((((..]....)))))))))))).... State 1a (S1a) of yeast 80S ribosome bound to open eEF3 and 2 tRNAs and eEF1A during mRNA decoding; tRNA 9asm E 95 2.8 RF00027,RF04289 39368465 0035195 0016442 9606 aaacauugcucuaucagagugagguaguagauuguauaguugugggguacccuguaacuauacaaucuauugccuucccugaggaguagacuugc .....<<<<<<<.<<<<.<.<<<<<<<<<<<<<<<<<<<.....<<<..>>>.....>>>>>>>>>>>>>>>>>>>>.>>>>>>>>>>>...... ......((((((.((((.(.(((((((((((((((((((......((()))......)))))))))))))))))))).))))))))))....... Human Drosha and DGCR8 in complex with Pri-let-7f1; Pri-let-7f1 9asn E 97 3.2 RF00027,RF04289 39368465 0035195 0016442 9606 auucugcucaugccagggugagguaguaaguuguauuguuguggggugccccaauauaacuauacaacuuacuacuuucccugguguguggcauauu <<....<.<<<<<<<<<<.<<<<<<<<<<<<<<<<.......<<<<..>>>>..........>>>>>>>>>>>>>>>>>>>>>>>>>>.>....>>. .(....(.((((((((((.((((((((((((((((..(.....(((..)))........)..)))))))))))))))))))))))))).)....).. Human Drosha and DGCR8 in complex with Pri-miR-98; Pri-miR-98 9aso E 71 2.9 RF00027 39368465 0035195 0016442 9606 ugacugcaugcucccagguugagguaguagguuguauacagccuccuagcuuuccuugggucuugcacuaa .....<<<.<..<<<<<<..<<<.<<<.<<<<<<<..>>>>>>>.>>>.>>>..>>>>>>.>.>>>..... .....(((.(..((((((..(((..((.(((((((..))))))).))..)))..)))))).).)))..... Human Drosha and DGCR8 in complex with Pri-let-7a2; Pri-let-7a2 9asp E 96 3.2 RF00027 39368465 0035195 0016442 9606 guucucuucacugugggaugagguaguagguuguauaguuuuccaccacugggagauaacuauacaaucuacugucuuuccuaacgugauagaaaa .......<<<<.<<<<<<.<<<<<<<<<<<<<<<<<<<<<...<<....>>......>>>>>>>>>>>>>>>>>>>>>>>>>>.>>>>>....... ..(....((((..(((((..(((((((((.(((((.(((....((....)).......))).))))).))))))))).)))))..)))).....). Human Drosha and DGCR8 in complex with Pri-let-7a1; Pri-let-7a1 9asq E 100 3.0 RF00027,RF04289 39368465 0035195 0016442 9606 aaacauugcucuaucagagugagguaguagauuguauaguugugggguacccuguaacuauacaaucuauugccuucccugaggaguagacuugcugcau .....<<<<<<<.<<<<.<.<<<<<<<<<<<<<<<<<<<<....<<<..>>>....>>>>>>>>>>>>>>>>>>>>>.>>>>>>>>>>>........... ......((((((.((((.(.(((((((((((((((((((.....(((()))).....)))))))))))))))))))).))))))))))............ Human Drosha, DGCR8 and SRSF3 in complex with Pri-let-7f1; Pri-let-7f1 9axv Sn 75 2.4 RF00005 URS00021ED942_559292 39379376 0030533 0006412 4896 agcgccgugacgcaguggaagcgcgcagggcucauaacccugauguccucggaucgaaaccgagcggcgcuacca <<<<<<<...<<<.......>>>.<<<<<<.......>>>>>.>...<<<<<.......>>>>>>>>>>>>.... (((((((...(((....[..)))..(((((.......))))).....(((((..]....)))))))))))).... Translating S. pombe ribosome; A/P tRNA 9b00 2w 72 2.8 RF00005 URS00005AA258_562 39019034 0030533 0006412 562 cccgganagcucagggagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggcacca <<<<<<..<<<<.....>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>..... ((((((..((((...[.)))).((((.........)))).....(((((..]....)))))))))))..... Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with berberine analog of chloramphenicol CAM-BER, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.80A resolution; A-site and E-site Deacylated tRNAphe 9bz1 A 84 2.8 RF01750 0006730,1900371 1520 uagucauaugacugacggaaguggaguuaccacaugaaguaugacuaggcauauuaucuuauaugccaagccgaccgucugggc <<<<<<<<<....(((((..<<<<.....>>>>.....>>>>>>>>><<<<<<<......>>>>>>>..<<<..)))))..>>> (((((((((..(.[[[[[..((((.....))))..)..)))))))))(((((((......)))))))..(((..]]]]]..))) Cocrystal structure of Clostridium beijerinckii ZTP riboswitch with AICA; RNA (84-MER) 9bz1 B 84 2.8 RF01750 0006730,1900371 1520 uagucauaugacugacggaaguggaguuaccacaugaaguaugacuaggcauauuaucuuauaugccaagccgaccgucugggc <<<<<<<<<....(((((..<<<<.....>>>>.....>>>>>>>>><<<<<<<......>>>>>>>..<<<..)))))..>>> (((((((((..(.[[[[[..((((.....))))..)..)))))))))(((((((......)))))))..(((..]]]]]..))) Cocrystal structure of Clostridium beijerinckii ZTP riboswitch with AICA; RNA (84-MER) 9bzc A 87 2.52 RF01750 0006730,1900371 1520 uagucauaugacugacggaaguggaguuaccacaugaaguaugacuaggcauauuaucuuauaugccaaaaagccgaccgucugggc <<<<<<<<<....(((((..<<<<.....>>>>.....>>>>>>>>><<<<<<<......>>>>>>>.....<<<..)))))..>>> (((((((((..(.[[[[[..((((.....))))..)..)))))))))(((((((......))))))).....(((..]]]]]..))) Cocrystal structure of Clostridium beijerinckii ZTP riboswitch with ZMP and Cs; RNA (87-MER) 9c6i A 393 2.56 RF02001,RF01998 URS000080DE77_182710 39837824 0000373 182710 guuaugugugcccggcaugggugcagucuauagggugagagucccgaacugugaaggcagaaguaacaguuagccuaacgcaaggguguccguggcgacauggaaucugaaggaagcggacggcaaaccuucggucugaggaacacgaacuucauaugaggcuagguaucaauggaugaguuugcauaacaaaacaaaguccuuucugccaaaguugguacagaguaaaugaagcagauugaugaagggaaagacugcauucuuacccggggaggucuggaaacagaagucagcagaagucauaguacccuguucgcaggggaaggacggaacaaguauggcguucgcgccuaagcuugaaccaccguauaccgaacgguacguacgguggug [[[[[.....<<<<<...<<<<<<<<<<<...<<<.......>>>..<<<<<...(((((((...>>>>>..<<<...<<<..<<<<.<<<<<<....>>>>>>>>>>.......>>>...>>>...<<<<<<<<<<<...........<<<<<......<<<..<<<<<<<<<<<<..<<<<..]]]]].>>>>...>>>>.)))))))...>>>>>>>>..>>>...>>>>>>>>>>...>>>>>>...>>>>>>>>>>>....>>>>>....<<<<....>>>>...........<<<......<<<<......>>>>....>>>....<<<<<..<<<<....>>>>...>>>>>.<<<<<<<<<<<<<....>>>..>>>>>>>>>>. {{{{{..[<.((((({..(((((((((((...(((.......)))..(((((...[[[[[[[...)))))..(((...(((..((((.((((((....))))))))))...>}..)))...)))...(((((((((((.(.....)...(((((.....[(((..((((((((((((..((((.]}}}}}.))))...)))).]]]]]]]...))))))))..)))...))))))))))...))))))...)))))))))))...])))))(...((((....))))...).......(((.(....(((........)))...))))....(((((..((((....))))...))))).(((.(((((((((....)))..)))))).))). Cryo-EM structure of a group IIC intron RNA; Group IIC Intron 9c6j A 387 2.41 RF02001,RF01998 39837824 0000373 182710 guuaugugugcccggcaugggugcagucuauagggugagagucccgaacugugaaggcagaaguaacaguuagccuaacgcaaggguguccguggcgacauggaaucugaaggaagcggacggcaaaccuucggucugaggaacacgaacuucauaugaggcuagguaucaauggaugaguuugcauaacaaaacaaaguccuuucugccaaaguugguacagaguaaaugaagcagauugaugaagggaaagacugcauucuuacccggggaggucuggaaacagaagucagcagaagucauaguacccuaggggaaggacggaacaaguauggcguucgcgccuaagcuugaaccaccguauaccgaacgguacguacgguggug [[[[[.....<<<<<...<<<<<<<<<<<...<<<.......>>>..<<<<<...(((((((...>>>>>..<<<...<<<..<<<<.<<<<<<....>>>>>>>>>>.......>>>...>>>...<<<<<<<<<<<...........<<<<<......<<<..<<<<<<<<<<<<..<<<<..]]]]].>>>>...>>>>.)))))))...>>>>>>>>..>>>...>>>>>>>>>>...>>>>>>...>>>>>>>>>>>....>>>>>....<<<<....>>>>...........<<<......<<<..>>>....>>>....<<<<<..<<<<....>>>>...>>>>>.<<<<<<<<<<<<<....>>>..>>>>>>>>>>. {{{{{..[<.((((({..(((((((((((...(((.......)))..(((((...[[[[[[[...)))))..(((...(((..((((.((((((....))))))))))...>}..)))...)))...(((((((((((.(.....)...(((((.....[(((..((((((((((((..((((.]}}}}}.))))...)))).]]]]]]]...))))))))..)))...))))))))))...))))))...)))))))))))...])))))(...((((....))))...).......(((.(....(((..)))...))))....(((((..((((....))))...))))).(((.(((((((((....)))..)))))).))). Group IIC intron embedded with the TPP riboswitch; Group IIC intron embedded with the TPP riboswitch 9cbu N 387 2.2 RF00028 0000372 5911 ggagggaaaaguuaucaggcaugcaccugguagcuagucuuuaaaccaauagauugcaucgguuuaaaaggcaagaccgucaaauugcgggaaaggggucaacagccguucaguaccaagucucaggggaaacuuugagauggccuugcaaaggguaugguaauaagcugacggacaugguccuaaccacgcagccaaguccuaagucaacagaucuucuguugauauggaugcaguucacagacuaaaugucggucggggaagauguauucuucucauaagauauagucggaccucuccuuaaugggagcuagcggaugaagugaugcaacacuggagccgcugggaacuaauuuguaugcgaaaguauauugauuaguuuuggag .........<<<<<<<<<<..(((.>>>>>>>>>>.<<<<<<<<<<<......<<<<<<.>>>>>>.>>>>>..<<<<<.<....<<<<<<...<<<<<<.....<<<.<<<<.<<...<<<<<<<<<....>>>>>>>>>..<<..)))..>>.....>>......>>>>>>>....>>>>>>..>>.>>>><<...<<<<...<<<<<<<<<...>>>>>>>>>..>>>>...>>.....(((((...>.>>>>>.<<<<<<<.....>>>>>>>........)))))...(..<<<<<....>>>>><<<<<<<....<<<<>>>>>>>>>>....>>>>>>>.<<<<<<<<.<<<<<......>>>>>.>>>>>>>>..)... .........((((((((((..{{{.)))))))))).(((((((((((....(.[[[[[[))))))).)))))..(((((.(....((((((...((((((.....(((.((((.(((..(((((((((....)))))))))..((..}}.}.))....)))......)))))))....))))))..)).))))((...((((..((((((((((...))))))))).)))))...))...[.[[[[[...).))))).(((((((.....)))))))........]]]]]]..(..(((((....)))))(((((((.....(((]]]]]]))).....))))))).((((((((.(.((((....)))).).))))))))..)... Tetrahymena ribozyme with consensus water and magnesium ions; RNA (387-MER) 9cbw N 387 2.3 RF00028 0000372 5911 ggagggaaaaguuaucaggcaugcaccugguagcuagucuuuaaaccaauagauugcaucgguuuaaaaggcaagaccgucaaauugcgggaaaggggucaacagccguucaguaccaagucucaggggaaacuuugagauggccuugcaaaggguaugguaauaagcugacggacaugguccuaaccacgcagccaaguccuaagucaacagaucuucuguugauauggaugcaguucacagacuaaaugucggucggggaagauguauucuucucauaagauauagucggaccucuccuuaaugggagcuagcggaugaagugaugcaacacuggagccgcugggaacuaauuuguaugcgaaaguauauugauuaguuuuggag .........<<<<<<<<<<..(((.>>>>>>>>>>.<<<<<<<<<<<......<<<<<<.>>>>>.>>>>>>..<<<<<.<....<<<<<<...<<<<<<.....<<<.<<<<.<<...<<<<<<<<<....>>>>>>>>>..<<..)))..>>.....>>......>>>>>>>....>>>>>>..>>.>>>><<...<<<<...<<<<<<<<<...>>>>>>>>>..>>>>...>>.....(((((...>.>>>>>.<<<<<<<.....>>>>>>>........)))))...(..<<<<<....>>>>><<<<<<<....<<<<>>>>>>>>>>....>>>>>>>.<<<<<<<<..<<<<......>>>>..>>>>>>>>..)... .........((((((((((..{{{.)))))))))).(((((((((((....(.[[[[[[))))))).)))))..(((((.(....((((((...((((((.....(((.((((.(((..(((((((((....)))))))))..((..}}.}.))....)))......)))))))....))))))..)).))))((...((((..((((((((((...))))))))).)))))...))...[.[[[[[...).))))).(((((((.....)))))))........]]]]]]..(..(((((....)))))(((((((.....(((]]]]]]))).....))))))).((((((((...((((....))))...))))))))..)... Tetrahymena ribozyme with consensus water and magnesium ions; RNA (387-MER) 9cbx N 387 2.2 RF00028 0000372 5911 ggagggaaaaguuaucaggcaugcaccugguagcuagucuuuaaaccaauagauugcaucgguuuaaaaggcaagaccgucaaauugcgggaaaggggucaacagccguucaguaccaagucucaggggaaacuuugagauggccuugcaaaggguaugguaauaagcugacggacaugguccuaaccacgcagccaaguccuaagucaacagaucuucuguugauauggaugcaguucacagacuaaaugucggucggggaagauguauucuucucauaagauauagucggaccucuccuuaaugggagcuagcggaugaagugaugcaacacuggagccgcugggaacuaauuuguaugcgaaaguauauugauuaguuuuggag .........<<<<<<<<<<..(((.>>>>>>>>>>.<<<<<<<<<<<......<<<<<<.>>>>>>.>>>>>..<<<<<.<....<<<<<<...<<<<<<.....<<<.<<<<.<<...<<<<<<<<<....>>>>>>>>>..<<..)))..>>.....>>......>>>>>>>....>>>>>>..>>.>>>><<...<<<<...<<<<<<<<<...>>>>>>>>>..>>>>...>>.....(((((...>.>>>>>.<<<<<<<.....>>>>>>>........)))))...(..<<<<<....>>>>><<<<<<<....<<<<>>>>>>>>>>....>>>>>>>.<<<<<<<<.<<<<<......>>>>>.>>>>>>>>..)... .........((((((((((..{{{.)))))))))).(((((((((((....(.[[[[[[))))))).)))))..(((((.(....((((((...((((((.....(((.((((.(((..(((((((((....)))))))))..((..}}.}.))....)))......)))))))....))))))..)).))))((...((((..((((((((((...))))))))).)))))...))...[.[[[[[...).))))).(((((((.....)))))))........]]]]]]..(..(((((....)))))(((((((.....(((]]]]]]))).....))))))).((((((((.(.((((....)))).).))))))))..)... Tetrahymena ribozyme with automatically identified water and magnesium ions; RNA (387-MER) 9cby N 387 2.3 RF00028 0000372 5911 ggagggaaaaguuaucaggcaugcaccugguagcuagucuuuaaaccaauagauugcaucgguuuaaaaggcaagaccgucaaauugcgggaaaggggucaacagccguucaguaccaagucucaggggaaacuuugagauggccuugcaaaggguaugguaauaagcugacggacaugguccuaaccacgcagccaaguccuaagucaacagaucuucuguugauauggaugcaguucacagacuaaaugucggucggggaagauguauucuucucauaagauauagucggaccucuccuuaaugggagcuagcggaugaagugaugcaacacuggagccgcugggaacuaauuuguaugcgaaaguauauugauuaguuuuggag .........<<<<<<<<<<..(((.>>>>>>>>>>.<<<<<<<<<<<......<<<<<<.>>>>>.>>>>>>..<<<<<.<....<<<<<<...<<<<<<.....<<<.<<<<.<<...<<<<<<<<<....>>>>>>>>>..<<..)))..>>.....>>......>>>>>>>....>>>>>>..>>.>>>><<...<<<<...<<<<<<<<<...>>>>>>>>>..>>>>...>>.....(((((...>.>>>>>.<<<<<<<.....>>>>>>>........)))))...(..<<<<<....>>>>><<<<<<<....<<<<>>>>>>>>>>....>>>>>>>.<<<<<<<<..<<<<......>>>>..>>>>>>>>..)... .........((((((((((..{{{.)))))))))).(((((((((((....(.[[[[[[))))))).)))))..(((((.(....((((((...((((((.....(((.((((.(((..(((((((((....)))))))))..((..}}.}.))....)))......)))))))....))))))..)).))))((...((((..((((((((((...))))))))).)))))...))...[.[[[[[...).))))).(((((((.....)))))))........]]]]]]..(..(((((....)))))(((((((.....(((]]]]]]))).....))))))).((((((((...((((....))))...))))))))..)... Tetrahymena ribozyme with automatically identified water and magnesium ions; RNA (387-MER) 9d0j 1w 71 2.5 RF00005 URS00005AA258_562 0030533 0006412 562 gcccgganagcucaggguagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggca <<<<<<<..<<<<......>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>>. (.(((((..((((...[..)))).((((.........)))).....(((((..]....)))))))))).). Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with BT-33, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution; A-site and E-site Deacylated tRNAphe 9d0j 2w 69 2.5 RF00005 URS00005AA258_562 0030533 0006412 562 cccgganagcucagggagagcaggggauugaanauccccgunuccuuggnucgauuccgaguccgggca <<<<<<..<<<<.....>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>.. ((((((..((((...[.)))).((((.........)))).....(((((..]....))))))))))).. Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with BT-33, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution; A-site and E-site Deacylated tRNAphe 9dfc 1x 77 2.5 RF00005 URS000041AF00_562 39372947 0030533 0006412 562 cgcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaaccn .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution; P-site Aminoacylated fMet-tRNAmet 9dfc 2x 77 2.5 RF00005 URS000041AF00_562 39372947 0030533 0006412 562 cgcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaaccn .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution; P-site Aminoacylated fMet-tRNAmet 9dfd 1x 77 2.6 RF00005 URS000041AF00_562 39372947 0030533 0006412 562 cgcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaaccn .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin B, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.60A resolution; P-site Aminoacylated fMet-tRNAmet 9dfd 2x 77 2.6 RF00005 URS000041AF00_562 39372947 0030533 0006412 562 cgcggggnggagcagccugguagcucgucgggnucauaacccgaaggucgucggnucaaauccggcccccgcaaccn .<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))..... Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin B, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.60A resolution; P-site Aminoacylated fMet-tRNAmet 9dtr 2 132 2.31 RF00004 38746449 0045131 0000348 0005686 4932 aaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuauuuuuuggcaccuggacgggaagagacuuuaaagugagacgucgcgacccucgcacuuggucgcuugauguuucucuucccguucg ...........................................................<<<<<<<<<<..<<<<..>>>><<<<<<<<<<<<<<.........>>>>>>..>>>>>>>>.>>>>>>>>>>. ...........................................................((((((((((.(.(((()))))(((((((((((.((.........)).)))..)))))))).)))))))))). Structure of the yeast post-catalytic P complex spliceosome at 2.3 Angstrom resolution; U2 snRNA 9dtr 5 173 2.31 RF00020 38746449 0000244,0000353 0005682,0046540 4932 agcagcuuuacagaucaauggcggaggaggucaacaucaagaacugugggccuuuuauugccuauagaacuuauaacgaacaugguucuugccuuuuaccagaaccauccggguguugucuccaugaaacagguaaagcuguccguuacugugggcuugccauuuuuuggaac .<<<<<<.<<<<<.....<<<<<<<<<<<<.<<<<<<<.....<<<<<<<<........>>>>>>>>..............<<<<<<<<...........>>>>>>>>...>>>>>>>>>>>>......<<<......>>>>>>>>>>>>>>>>>>>.>>............. .(((((((.((((.....((((((((((((.(((((((.....((((((((........)))))))).........((...((((((((.(.......).)))))))).))))))))))))))......(((......))))))))))))))))))).))............. Structure of the yeast post-catalytic P complex spliceosome at 2.3 Angstrom resolution; U5 snRNA 9dtr 6 102 2.31 RF00026 38746449 0030621 0000244,0000353 0005688,0046540 4932 guucgcgaaguaacccuucguggacauuuggucaauuugaaacaauacagagaugaucagcaguuccccugcauaaggaugaaccguuuuacaaagagauuu <<<<<<<<<<.....>>>>>>>>>>.....................................<<<..<<<.....>>>...>>>.................. ((((((((((.....)))))))))).....................................(((.((((.....)))..)))).................. Structure of the yeast post-catalytic P complex spliceosome at 2.3 Angstrom resolution; U6 snRNA 9dtt B 67 3.6 RF02340,RF03546 39677779 0039694 11060 uguuagucuacguggaccgacaaagacagauucuuugagggagcuaagcucaacguaguucuaacag .<<<<<...<<<<.<<<<..<<<<<<.....>>>>>>.>>.........>>.>>>>....>>>>>.. ....((...((((.((((..((((((.....)))))).)).........)).))))....))..... Cryo-EM structure of DENV2 NS5 in complex with Stem Loop A (SLA); stem loop A 9esh 5 102 3.2 RF00020 39833470 0000244,0000353 0005682,0046540 4896 cgucaaagcacuuugcaaaagcuaacguaucuguuucuugccuuuuaccagaaacagccguuuguaaggugugcuaauuugacuguauaguuuuuguaaucu .<<<<<<<<<<<<<<<<<<...........<<<<<<<<...........>>>>>>>>...>>>>>>>>>>>>.....>>>>>>................... (((((((((((((((((((......((...((((((((.(.......).)))))))).)))))))))))))).....)))))).)................. Structure of a B-state intermediate committed to discard (Bd-I state); U5snRNA 9esh 6 92 3.2 RF00026 39833470 0030621 0000244,0000353 0005688,0046540 4896 gaucuucggaucacuuuggucaaauugaaacgauacagagaagauuagcauggccccugcacaaggaugacacugcgacauugagagaaaac <<<<....>>>>......................................<<...<<<.....>>>....>>.................... ((((....))))......................................((..((((.....)))..).)).................... Structure of a B-state intermediate committed to discard (Bd-I state); U6snRNA 9esi 5 102 3.1 RF00020 39833470 0000244,0000353 0005682,0046540 4896 cgucaaagcacuuugcaaaagcuaacguaucuguuucuugccuuuuaccagaaacagccguuuguaaggugugcuaauuugacuguauaguuuuuguaaucu <<<<<<<<<<<<<<<<<<<...........<<<<<<<<...........>>>>>>>>...>>>>>>>>>>>>.....>>>>>>.>................. (((((((((((((((((((......((...((((((((.(.......).)))))))).)))))))))))))).....)))))).)................. Structure of a B-state intermediate committed to discard (Bd-II state); U5snRNA 9esi 6 92 3.1 RF00026 39833470 0030621 0000244,0000353 0005688,0046540 4896 gaucuucggaucacuuuggucaaauugaaacgauacagagaagauuagcauggccccugcacaaggaugacacugcgacauugagagaaaac <<<<<..>>>>>......................................<<...<<<.....>>>....>>.................... ((((....))))......................................((..((((.....)))..).)).................... Structure of a B-state intermediate committed to discard (Bd-II state); U6snRNA 9f9s CP 76 2.9 RF00005 URS000080E1EA_4932 39566505,31588918 0030533 0006412 4932 uuccucguggcccaauggucacggcgucuggcuicgaaccagaagauuccagguucaaguccuggcggggaagcca <<<<<<<..<<<..........>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..(((.....[....))).(((((.......))))).....(((((..]....)))))))))))).... Yeast SDD1 Disome with Mbf1; tRNA P-site, stalled 9fmd 2 120 3.3 RF00004 URS0000E60B75_9606 38925148,30705154 0045131 0000348 0005686 9606 aucgcuucucggccuuuuggcuaagaucaaguguaguaucuguucuuaucaguuuaauauauauuaaaagauuuuuggaacugcaucgaccugguauugcaguaccuccaggaacggugc .....................................................<<<<<<..>>>>>>...............<<<<<<.<<<<<.............>>>>>..>>>>>> .....................................................((((((()))))))...............((((((.(((((.............)))))..)))))) Integrative model of the human post-catalytic spliceosome (P-complex); U2 snRNA 9fmd 5 92 3.3 RF00020 38925148,30705154 0000244,0000353 0005682,0046540 9606 guuucucuucagaucgcauaaaucuuucgccuuuuacuaaagauuuccguggagaggaacaccaauuuuuugagccuugccuuggcaaggcu <<<<<<<<<<<........<<<<<<<<...........>>>>>>>>...>>>>>>>>>>>............<<<<<<<<....>>>>>>>> (((((((((((...((...((((((((.(.......).)))))))).))))))))))))).............(((((((....))))))). Integrative model of the human post-catalytic spliceosome (P-complex); U5 snRNA 9fmd 6 97 3.3 RF00026 38925148,30705154 0030621 0000244,0000353 0005688,0046540 9606 gugcucgcuucggcagcacauauacuaaaauuggaacgauacagagaagauuagcauggccccugcgcaaggaugacacgcaaauucgugaagcguu <<<<<.<<....>>>>>>>.....................................<<...<<<.....>>>....>>................... (((((.((....))))))).....................................((..((((.....)))..).))................... Integrative model of the human post-catalytic spliceosome (P-complex); U6 snRNA 9fo9 A 33 NA RF03120 39442924 0039694 2901879 gggcugcuuacgguuucguccguguugcagccc <<<<<<<.<<<<<......>>>>>..>>>>>>> (((((((..((((......))))...))))))) 5_SL5a of S_SL5 of Sars-Cov-2; RNA (33-MER) 9gbw R 118 3.5 RF00548 39809272 0030627 0000395 0005692 9606 aaaaagggcuucugucgugaguggcacacguagggcaauugcucugcgugcggaaucgacaucaagagauuucggaagcauaauuuuuugguauuugggcagcuggucccggcgcccu .......<<<<<<<<<......>>>><<<<<<<<<<<..>>>>>>>>>>><<<<<<<..........>>>>>>>>>>>>.................<<<<.<<<<....>>>>>>>>. .......(((((((((......))))(((((((((((())))))))))))(((((((..........)))))))))))).................((((.((.((..)).)))))). Overall structure of the substrate-bound U11 snRNP; U11 snRNA 9gbz R 79 3.4 RF00548 39809272 0030627 0000395 0005692 9606 aaaaagggcuucugucgugaguggcacacguagggcaauugcucugcgugcggaaucgacaucaagagauuucggaagc .......<<<<<<<<<......>>>><<<<<<<<<<<..>>>>>>>>>>><<<<<<<..........>>>>>>>>>>>> .......(((((((((......))))(((((((.(((()))).)))))))(((((((..........)))))))))))) 5'-lobe of the substrate-bound U11 snRNP; U11 snRNA 9gcm A 66 3.1 RF00548 39809272 0030627 0000395 0005692 9606 ucugucgugaguggcacacguagggcaauugcucugcgugcggaaucgacaucaagagauuucgga <<<<<<......>>>><<<<<<<<<<<..>>>>>>>>>>><<<<<<<..........>>>>>>>>> ((((((......))))(((((((.(((()))).)))))))(((((((..........))))))))) Structure of the U11 snRNP core; U11 snRNA 9gft AU 76 3.1 RF00005,RF00023 URS00001C39A4_562 39922193 0030533 0006401,0006412 562 ggggcuauagcucagcugggagagcgcuugcauggcaugcaagaggucagcgguucgaucccgcuuagcuccacca .<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((....[...)))).(((((.......))))).....(((((..]....)))))))))))..... Structure of the HrpA-bound E. coli disome, Class I; P-site tRNA 9ggr AU 76 3.2 RF00005,RF00023 URS00001C39A4_562 39922193 0030533 0006401,0006412 562 ggggcuauagcucagcugggagagcgcuugcauggcaugcaagaggucagcgguucgaucccgcuuagcuccacca .<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<<<<.......>>>>>>>>>>>..... .((((((..((((....[...)))).(((((.......))))).....(((((..]....)))))))))))..... Structure of the HrpA-bound E. coli disome, Class II; P-site tRNA 9j8p B 106 3.21 RF00026 39831302 0030621 0000244,0000353 0005688,0046540 9606 gugcucgcuucggcagcacauauacuaaaauuggaacgauacagagaagauuagcauggccccugcgcaaggaugacacgcaaauucgugaagcguuccauauuuu <<<<<.<<....>>>>>>>.........<<<<<<<<<<...<...........<<.<<.<.<<<.....>>>..>.>>.>>......>.....>>>>>>>.>>>.. (((((.((....))))))).........((((((((((...............((.((.(.(((.....)))..).)).))............))))))).))).. Cryo-EM structure of human TUT1 complexed with U6 snRNA; U6 snRNA