3muv	R	91	3.2	RF01051	URS000080DF93_666	20690679		0035438			666	ngucacgcacagagcaaaccauucgaaagagugggacgcaaagccuccggccuaaaccauugcacuccgguagguagcgggguuaucgaug	...<<<<......<<...<<<<<<....>>>>>>...>>...<<<.<<<<<<<..<<<..........>>>>>>>..>>>>>>...>>.>>	...((((......((...((((((....))))))..[))...(((.(((((((...((..........)).)))).]))))))...)).))	Crystal Structure of the G20A/C92U mutant c-di-GMP riboswith bound to c-di-AMP; G20A/C92U mutant c-di-GMP riboswitch
4qk8	A	122	3.05	RF00379	URS00021ED98F_496866	25086507		0180001	0010468		496866	nguugccgaauccgaaagguacggaggaaccgcuuuuugggguuaaucugcagugaagcugcaguagggauaccuucugucccgcacccgacagcuaacuccggaggcaauaaaggaaggan	...[[[[....<<....>>..(((((....{........[[[[....<<<<<<.....>>>>>>..(((((.<<<<<<)))))..]]]]....}....)))))..]]]].....>>>>>>..	...((((....((....))..(((((....(.....{.(((((....((((((.....))))))..(((((.[[[[[[)))))..)))).}).)....)))))..)))).....]]]]]]..	Thermoanaerobacter pseudethanolicus c-di-AMP riboswitch; C-di-AMP riboswitch
4qk9	A	117	3.05	RF00379	URS00021ED9C8_336261	25086507		0180001	0010468		336261	cgcugaauucccugaagggaaacgggggacccaauggggugaaucccacguaaguggguagggcuagucucuuucggcccgaacccgucagcuaaccucguaagcguggaaagaggn	[[[[...<<<<<....>>>>>((((((....{....[[[[....<<<<<....>>>>>..(((((...<<<<<<<)))))..]]]]....}....)))))).]]]]..>>>>>>>..	((((...(((((....)))))((((((....(...(((((....(((((....)))))..(((((...[[[[[[[)))))..))))..).)....)))))).))))..]]]]]]]..	Thermovirga lienii c-di-AMP riboswitch; C-di-AMP riboswitch
4qka	A	120	3.2	RF00379	URS00021ED98F_496866	25086507		0180001	0010468		496866	nguugccgaauccgaaagguacggaggaaccgcuuuuugggguuaaucugcaguagcugcaguagggauaccuucugucccgcacccgacagcuaacuccggaggcaauaaaggaaggan	...[[[[....<<....>>..(((((....{........[[[[....<<<<<<...>>>>>>..(((((.<<<<<<)))))..]]]]....}....)))))..]]]].....>>>>>>..	...((((....((....))..(((((....(.....{.(((((....((((((...))))))..(((((.[[[[[[)))))..)))).}).)....)))))..)))).....]]]]]]..	c-di-AMP riboswitch from Thermoanaerobacter pseudethanolicus, iridium hexamine soak; C-di-AMP riboswitch
4qlm	A	108	2.721	RF00379	URS000080E09A_273068	25086509		0180001	0010468		273068	aucgcugaacgcgggggacccagggggcgaaucucuuccgaaaggaagaguaggguuacuccuucgacccgagcccgucagcuaaccucgcaagcguccgaaggagaa	..[[[[....((((((....{...[[[[....<<<<<<<....>>>>>>>..(((((.<<<<<<<)))))..]]]]....}....)))))).]]]]...>>>>>>>..	..((((....((((((....(..(((((....(((((((....)))))))..(((((.[[[[[[[)))))..))))..).)....)))))).))))...]]]]]]]..	ydao riboswitch binding to c-di-AMP; RNA (108-MER)
4qln	A	117	2.65	RF00379	URS000080E09A_273068	25086509		0180001	0010468		273068	gaucgcugaacccgaaggggcgggggacccagggggcgaaucucuuccgaaaggaagaguaggguuacuccuucgacccgagcccgucagcuaaccucgcaagcguccgaaggagaa	...[[[[...<<<...>>>((((((....{...[[[[....<<<<<<<....>>>>>>>..(((((.<<<<<<<)))))..]]]]....}....)))))).]]]]...>>>>>>>..	...((((...(((...)))((((((....(..(((((....(((((((....)))))))..(((((.[[[[[[[)))))..))))..).)....)))))).))))...]]]]]]]..	structure of ydao riboswitch binding with c-di-dAMP; RNA (117-MER)
4w90	C	101	3.118	RF00379	URS000080DDC9_1423	25271255		0180001	0010468		1423	gcgcgcuuaaucugaaaucagagcgggggacccauugcacaggggugaauccuuuagguagggcgaaagcccgaauccgucagcuaaccucguaagcgcgc	<<<<<<<...<<<<....>>>><<<<<<....<.........<<<.....<<<..>>>..<<<<....>>>>...>>>....>....>>>>>>.>>>>>>>	(((((((...((((....))))((((((....(........(((((....(((..)))..((((....))))..))))..).)....)))))).)))))))	Crystal structure of Bacillus subtilis cyclic-di-AMP riboswitch ydaO; riboswitch a pseudo-dimeric RNA
4w92	C	96	3.209	RF00379	URS000080DDC9_1423	25271255		0180001	0010468		1423	gcgcgcuuaaucugcagagcgggggacccauugcacucaggggugaauccugguagggcgaaagcccgaauccgucagcuaaccucguaagcgcgc	<<<<<<<...<<<..>>><<<<<<....<...........<<<.....<<.>>..<<<<....>>>>...>>>....>....>>>>>>.>>>>>>>	(((((((...(((())))((((((....(..........(((((....((.))..((((....))))..))))..).)....)))))).)))))))	Crystal structure of Bacillus subtilis cyclic-di-AMP riboswitch ydaO; C-di-AMP ribsoswitch
6n5k	A	125	3.098	RF00379	URS000197CF5B_9606			0180001	0010468		9606	nguugccgaauccaugauuugguacggaggaaccgcuuuuugggguuaaucugcagugaagcugcaguagggauaccuucugucccgcacccgacagcuaacuccggaggcaauaaaggaaggag	...[[[[....<<<.....>>>..(((((....{........[[[[....<<<<<<.....>>>>>>..(((((.<<<<<<)))))..]]]]....}....)))))..]]]].....>>>>>>..	...((((....(((.....)))..(((((....(.....{.(((((....((((((.....))))))..(((((.[[[[[[)))))..)))).}).)....)))))..)))).....]]]]]]..	Structure of Human pir-miRNA-449c Apical Loop and One-base-pair Fused to the YdaO Riboswitch Scaffold; RNA (125-MER)
6n5n	A	125	2.951	RF00379	URS000197CF65_9606			0180001	0010468		9606	nguugccgaauccgaugcucgguacggaggaaccgcuuuuugggguuaaucugcagugaagcugcaguagggauaccuucugucccgcacccgacagcuaacuccggaggcaauaaaggaaggag	...[[[[....<<<<...>>>>..(((((....{........[[[[....<<<<<<.....>>>>>>..(((((.<<<<<<)))))..]]]]....}....)))))..]]]].....>>>>>>..	...((((....(((.....)))..(((((....(.....{.(((((....((((((.....))))))..(((((.[[[[[[)))))..)))).}).)....)))))..)))).....]]]]]]..	Structure of Human pir-miRNA-208a Apical Loop and One-base-pair Fused to the YdaO Riboswitch Scaffold; RNA (125-MER)
6n5o	A	126	2.708	RF00379	URS000197CF62_9606			0180001	0010468		9606	nguugccgaauccgaucuggcgguacggaggaaccgcuuuuugggguuaaucugcagugaagcugcaguagggauaccuucugucccgcacccgacagcuaacuccggaggcaauaaaggaaggag	...[[[[....<<<......>>>..(((((....{........[[[[....<<<<<<.....>>>>>>..(((((.<<<<<<)))))..]]]]....}....)))))..]]]].....>>>>>>..	...((((....(((......)))..(((((....(.....{.(((((....((((((.....))))))..(((((.[[[[[[)))))..)))).}).)....)))))..)))).....]]]]]]..	Structure of Human pir-miRNA-202 Apical Loop and One-base-pair Fused to the YdaO Riboswitch Scaffold; RNA (126-MER)
6n5p	A	127	2.991	RF00379	URS000197CF7A_9606			0180001	0010468		9606	nguugccgaauccaugucguuugguacggaggaaccgcuuuuugggguuaaucugcagugaagcugcaguagggauaccuucugucccgcacccgacagcuaacuccggaggcaauaaaggaaggag	...[[[[....<<<.......>>>..(((((....{........[[[[....<<<<<<.....>>>>>>..(((((.<<<<<<)))))..]]]]....}....)))))..]]]].....>>>>>>..	...((((....(((.......)))..(((((....(.....{.(((((....((((((.....))))))..(((((.[[[[[[)))))..)))).}).)....)))))..)))).....]]]]]]..	Structure of Human pir-miRNA-340 Apical Loop and One-base-pair Fused to the YdaO Riboswitch Scaffold; RNA (127-MER)
6n5q	A	128	2.946	RF00379	URS000197CF57_9606			0180001	0010468		9606	nguugccgaauccaccuagaaaugguacggaggaaccgcuuuuugggguuaaucugcagugaagcugcaguagggauaccuucugucccgcacccgacagcuaacuccggaggcaauaaaggaaggag	...[[[[....<<<........>>>..(((((....{........[[[[....<<<<<<.....>>>>>>..(((((.<<<<<<)))))..]]]]....}....)))))..]]]].....>>>>>>..	...((((....(((........)))..(((((....(.....{.(((((....((((((.....))))))..(((((.[[[[[[)))))..)))).}).)....)))))..)))).....]]]]]]..	Structure of Human pir-miRNA-378a Apical Loop and One-base-pair Fused to the YdaO Riboswitch Scaffold; RNA (128-MER)
6n5s	A	123	2.802	RF00379	URS000197CF70_9606			0180001	0010468		9606	nguugccgaauccaaaguugguacggaggaaccgcuuuuugggguuaaucugcagugaagcugcaguagggauaccuucugucccgcacccgacagcuaacuccggaggcaauaaaggaagga	...[[[[....<<<....>>>..(((((....{........[[[[....<<<<<<.....>>>>>>..(((((.<<<<<<)))))..]]]]....}....)))))..]]]].....>>>>>>.	...((((....(((....)))..(((((....(.....{.(((((....((((((.....))))))..(((((.[[[[[[)))))..)))).}).)....)))))..)))).....]]]]]].	Structure of Human pir-miRNA-320b-2 Apical Loop and One-base-pair Stem Fused to the YdaO Riboswitch Scaffold; RNA (123-MER)
6n5t	A	126	2.787	RF00379	URS000197CF7C_9606			0180001	0010468		9606	nguugccgaauccccuagaaagguacggaggaaccgcuuuuugggguuaaucugcagugaagcugcaguagggauaccuucugucccgcacccgacagcuaacuccggaggcaauaaaggaaggag	...[[[[....<<........>>..(((((....{........[[[[....<<<<<<.....>>>>>>..(((((.<<<<<<)))))..]]]]....}....)))))..]]]].....>>>>>>..	...((((....((........))..(((((....(.....{.(((((....((((((.....))))))..(((((.[[[[[[)))))..)))).}).)....)))))..)))).....]]]]]]..	Structure of Human pir-miRNA-378a Apical Loop Fused to the YdaO Riboswitch Scaffold; RNA (126-MER)
6wtl	A	124	2.85	RF00379	URS000197CF5D_9606			0180001	0010468		9606	nguugccgaauccauaugugguacggaggaaccgcuuuuugggguuaaucugcagugaagcugcaguagggauaccuucugucccgcacccgacagcuaacuccggaggcaauaaaggaaggag	...[[[[....<<<....>>>..(((((....{........[[[[....<<<<<<.....>>>>>>..(((((.<<<<<<)))))..]]]]....}....)))))..]]]].....>>>>>>..	...((((....(((....)))..(((((....(.....{.(((((....((((((.....))))))..(((((.[[[[[[)))))..)))).}).)....)))))..)))).....]]]]]]..	Structure of Human pir-miRNA-19b-2 Apical Loop and One-base-pair Fused to the YdaO Riboswitch Scaffold; RNA (124-MER)
6wtr	A	125	3.082	RF00379	URS000197CF84_9606			0180001	0010468		9606	nguugccgaauccuuuacuugguacggaggaaccgcuuuuugggguuaaucugcagugaagcugcaguagggauaccuucugucccgcacccgacagcuaacuccggaggcaauaaaggaaggag	...[[[[....<<.......>>..(((((....{........[[[[....<<<<<<.....>>>>>>..(((((.<<<<<<)))))..]]]]....}....)))))..]]]].....>>>>>>..	...((((....((.......))..(((((....(.....{.(((((....((((((.....))))))..(((((.[[[[[[)))))..)))).}).)....)))))..)))).....]]]]]]..	Structure of Human pir-miRNA-300 Apical Loop Fused to the YdaO Riboswitch Scaffold; RNA (125-MER)