1q29	A	17	3.0		URS000080E114_32630	12948485					32630	gguggucugaugaggcc	.................	(...............)	Hammerhead Ribozyme with 5'-5' G-G linkage: Conformational change experiment; 5'-R(*GP*GP*UP*GP*GP*UP*CP*UP*GP*AP*UP*GP*AP*GP*GP*CP*C)-3'
1wvd	A	23	2.93		URS000080E21C_32630	12736317					32630	cuugcugaggugcacacagcaag	.......................	.......................	HIV-1 Dis(Mal) Duplex CoCl2-Soaked; 5'-R(*CP*UP*UP*GP*CP*UP*GP*AP*GP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3'
1wvd	B	23	2.93		URS000080E21C_32630	12736317					32630	cuugcugaggugcacacagcaag	.......................	.......................	HIV-1 Dis(Mal) Duplex CoCl2-Soaked; 5'-R(*CP*UP*UP*GP*CP*UP*GP*AP*GP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3'
2xdb	G	36	2.55		URS000080E054_29471	21240270					29471	auucaggugauuugcuaccuuuaagugcagcuagan	....<<<<...((((.>>>>......))))......	....((((....[[[.))))......]]].......	A processed non-coding RNA regulates a bacterial antiviral system; TOXI
379d	A	16	3.1		URS000080DF69_32630	9506521					32630	guggucugaugaggcc	................	................	THE STRUCTURAL BASIS OF HAMMERHEAD RIBOZYME SELF-CLEAVAGE; RNA (5'-R(*GP*UP*GP*GP*UP*CP*UP*GP*AP*UP*GP*AP*GP*GP*CP*C)-3')
379d	B	25	3.1		URS000080E0D1_32630	9506521					32630	ggccgaaacucguaagagucaccac	.......<<<<....>>>>......	........(((....))).......	THE STRUCTURAL BASIS OF HAMMERHEAD RIBOZYME SELF-CLEAVAGE; RNA (5'-R(*GP*GP*CP*CP*GP*AP*AP*AP*CP*UP*CP*GP*UP*AP*AP*GP*A P*GP*UP*CP*AP*CP*CP*AP*C)-3')
3far	B	23	2.4		URS000080DD3F_32630						32630	cuugcugaagcgcgcacggcaag	.......................	.......................	Cation-dependent self-cleavage activity in the duplex form of the subtype-B HIV-1 RNA Dimerization Initiation Site; RNA (5'-R(*CP*UP*UP*GP*CP*UP*GP*AP*AP*GP*CP*GP*CP*GP*CP*AP*CP*GP*GP*CP*AP*AP*G)-3')
4rum	A	93	2.6426	RF02683	URS00008116B0_32630	25794617		0050897			32630	nggaacugagcaggcaaugaccagagcggucaugcagccgggcugcgaaagcggcaacagaugauacacgcacaucugugggacaguucccac	<<<<<<<<..<.<<<.<<<<<<.....>>>>>>...>>>..<<<<<....>>>>>.<<<<<<<.........>>>>>>>..>.>>>>>>>>..	((((((((..(.(((.((((((.....))))))...)))..(((((....))))).(((((((.........)))))))..).))))))))..	Crystal structure of the NiCo transition-metal riboswitch bound to cobalt; NiCo riboswitch RNA
5cki	D	15	2.985		URS00008FED29_32630	26735012					32630	gcacuagaucggaug	...............	...............	Crystal structure of 9DB1* deoxyribozyme (Cobalt hexammine soaked crystals); RNA (5'-R(P*GP*CP*AP*CP*UP*AP*GP*AP*UP*CP*GP*GP*AP*UP*G)-3')
7ei8	B	19	3.1		URS00023358B3_32630						32630	ggcnnnnaaccggggagcc	...................	...................	RNA kink-turn motif with 2-aminopurine; RNA (5'-R(*GP*GP*C)-D(P*(2PR)P*(2PR)P*(2PR)P*(2PR))-R(P*AP*AP*CP*CP*GP*GP*GP*GP*AP*GP*CP*C)-3')