6ck4	A	101	3.097	RF00442	URS0000D7794B_583357	29877798			0010468		583357	ugaaaguguaccuaggguuccagccuauguagguguucggaccgagcgguacagguaauaccacaccuuagggacaaaagcccgagaggauagguuucacu	<<<<<.<<<<<<..<<..<<<.<<<<<..>>>>>....>>>>>....>>>>>><<<<.>>>>...<<<<.<<<.......>>>..>>>>.....>>>>>..	(((((.((((((..((...((((((((..)))))..).)).))....))))))((((.))))...((((.(((.......)))..)))).....)))))..	G96A mutant of the PRPP riboswitch from T. mathranii bound to ppGpp; PRPP riboswitch
6ck4	B	108	3.097	RF00442	URS0000D7794B_583357	29877798			0010468		583357	gugaaaguguaccuaggguuccagccuauuuguagguguucggaccgagcgguacagguauauuauauaccacaccuuagggacaaaagcccgagaggaugguuucac	<<<<<<.<<<<<<..<<..<<<.<<<<<....>>>>>....>>>>>....>>>>>><<<<<<<.>>>>>>>...<<<<.<<<.......>>>..>>>>....>>>>>>	((((((.((((((..((...((((((((....)))))..).)).))....))))))(((((((.)))))))...((((.(((.......)))..))))....))))))	G96A mutant of the PRPP riboswitch from T. mathranii bound to ppGpp; PRPP riboswitch
6ck4	C	108	3.097	RF00442	URS0000D7794B_583357	29877798			0010468		583357	gugaaaguguaccuaggguuccagccuauuuguagguguucggaccgagcgguacagguauauuauauaccacaccuuagggacaaaagcccagaggauagguuucac	<<<<<<.<<<<<<..<<..<<<.<<<<<<..>>>>>>....>>>>>....>>>>>><<<<<<<.>>>>>>>...<<<<.<<<.......>>>.>>>>.....>>>>>>	((((((.((((((..((...(((((((((..))))))..).)).))....))))))(((((((.)))))))...((((.(((.......))).)))).....))))))	G96A mutant of the PRPP riboswitch from T. mathranii bound to ppGpp; PRPP riboswitch
6ck4	D	101	3.097	RF00442	URS0000D7794B_583357	29877798			0010468		583357	gugaaaguguaccuaggguuccagccuauguagguguucggaccgagcgguacagguaauauaccacaccuuagggacaaaagcccagaggaguuucacgu	.<<<<<.<<<<<<..<<..<<<.<<<<<..>>>>>....>>>>>....>>>>>><<<.....>>>...<<<<.<<<.......>>>.>>>>..>>>>>...	.((((..((((((..((...((((((((..)))))..).)).))....))))))(((.....)))...((((.(((.......))).))))...))))...	G96A mutant of the PRPP riboswitch from T. mathranii bound to ppGpp; PRPP riboswitch
6dmc	A	102	2.2		URS0000E60BA7_679936	30120360					679936	ngaaguguaccuagggauccaccucgagagaggaaggaccaagcgguacaggccuacuucgguagguuacaccguggggauaaaagacccguggcaaguuun	<<<<.<<<<<<..<<..<<<.<<<<....>>>>..>>>>>....>>>>>><<<<<<<....>>>>>>>...<<<<<<<.........>>>>>>>....>>>>	((((.((((((..((...((.((((....))))..)).))....))))))(((((((....)))))))...(((((((.........)))))))....))))	ppGpp Riboswitch bound to ppGpp, native structure; ppGpp Riboswitch
6dmc	B	102	2.2		URS0000E60BA7_679936	30120360					679936	ngaaguguaccuagggauccaccucgagagaggaaggaccaagcgguacaggccuacuucgguagguuacaccguggggauaaaagacccguggcaaguuun	.<<<.<<<<<<..<<..<<<.<<<<....>>>>..>>>>>....>>>>>><<<<<<<<..>>>>>>>>...<<<<<<<.........>>>>>>>....>>>.	((((.((((((..((...((.((((....))))..)).))....))))))(((((((....)))))))...(((((((.........)))))))....))))	ppGpp Riboswitch bound to ppGpp, native structure; ppGpp Riboswitch
6dmd	A	102	2.65		URS0000E60BA7_679936	30120360					679936	ngaaguguaccuagggauccaccucgagagaggaaggaccaagcgguacaggccuacuucgguagguuacaccguggggauaaaagacccguggcaaguuun	<<<<.<<<<<<..<<..<<<.<<<<....>>>>..>>>>>....>>>>>><<<<<<<....>>>>>>>...<<<<<<<.........>>>>>>>....>>>>	((((.((((((..((...((.((((....))))..)).))....))))))(((((((....)))))))...(((((((.........)))))))....))))	ppGpp Riboswitch bound to ppGpp, manganese chloride structure; ppGpp Riboswitch
6dmd	B	102	2.65		URS0000E60BA7_679936	30120360					679936	ngaaguguaccuagggauccaccucgagagaggaaggaccaagcgguacaggccuacuucgguagguuacaccguggggauaaaagacccguggcaaguuun	<<<<.<<<<<<..<<..<<<.<<<<....>>>>..>>>>>....>>>>>><<<<<<<<..>>>>>>>>...<<<<<<<.........>>>>>>>....>>>>	((((.((((((..((...((.((((....))))..)).))....))))))(((((((....)))))))...(((((((.........)))))))....))))	ppGpp Riboswitch bound to ppGpp, manganese chloride structure; ppGpp Riboswitch
6dme	A	102	2.702		URS0000E60BA7_679936	30120360					679936	ngaaguguaccuagggauccaccucgagagaggaaggaccaagcgguacaggccuacuucgguagguuacaccguggggauaaaagacccguggcaaguuun	<<<<.<<<<<<..<<..<<<.<<<<....>>>>..>>>>>....>>>>>><<<<<<<<..>>>>>>>>...<<<<<<<.........>>>>>>>....>>>>	((((.((((((..((...((.((((....))))..)).))....))))))(((((((....)))))))...(((((((.........)))))))....))))	ppGpp Riboswitch bound to ppGpp, thallium acetate structure; ppGpp Riboswitch
8fzf	A	2899	3.2	RF02541		39030416		0003735		0005840	562	gguuaagcgacuaagcguacacgguggaugcccuggcagucagaggcgaugaaggacgugcuaaucugcgauaagcgucgguaaggugauaugaaccguuauaaccggcgauuuccgaauggggaaacccaguguguuucgacacacuaucauuaacugaauccauagguuaaugaggcgaaccgggggaacugaaacaucuaaguaccccgaggaaaagaaaucaaccgagauucccccaguagcggcgagcgaacggggagcagcccagagccugaaucaguguguguguuaguggaagcgucuggaaaggcgcgcgauacagggugacagccccguacacaaaaaugcacaugcugugagcucgaugaguagggcgggacacgugguauccugucugaauauggggggaccauccuccaaggcuaaauacuccugacugaccgauagugaaccaguaccgugagggaaaggcgaaaagaaccccggcgaggggagugaaaaagaaccugaaaccguguacguacaagcagugggagcacgcuuaggcgugugacugcguaccuuuuguauaaugggucagcgacuuauauucuguagcaagguuaaccgaauaggggagccgaagggaaaccgagucuuaacugggcguuaaguugcaggguauagacccgaaacccggugaucuagccaugggcagguugaagguuggguaacacuaacuggaggaccgaaccgacuaaunungaaaaauuagcggaugacuuguggcugggggugaaaggccaaucaaaccgggagauagcugguucuccccgaaagcuauuuagguagcgccucgugaauucaucuccggggguagagcacuguuucggcaagggggucaucccgacuuaccaacccgaugcaaacugcgaauaccggagaauguuaucacgggagacacacggcgggugcuaacguccgucgugaagagggaaacaacccagaccgccagcuaaggucccaaagucaugguuaagugggaaacgaugugggaaggcccagacagccaggauguuggcuuagaagcagccaucauuuaaagaaagcguaauagcucacuggucgagucggccugcgcggaagauguaacggggcuaaaccaugcaccgaagcugcggcagcgacgcgcguuguuggguaggggagcguucuguaagccugcgaaggugugcugugaggcaugcuggagguaucagaagugcgaaugcugacauaaguaacgauaaagcgggugaaaagcccgcucgccggaagaccaaggguuccuguccaacguuaaucggggcagggugagucgaccccuaaggcgaggccgaaaggcguagucgaugggaaacagguuaauauuccuguacuugguguuacugcgaaggggggacggagaaggcuauguuggccgggcgacgguugucccgguuuaagcguguaggcugguuuuccaggcaaauccggaaaaucaaggcugaggcgugaugacgaggcacuacggugcugaagcaacaaaugcccugcuuccaggaaaagccucuaagcaucagguaacaucaaaucguaccccaaaccgacacngguggucagguagagaauaccaaggcgcuugagagaacucgggugaaggaacuaggcaaaauggugccguaacuucgggagaaggcacgcugauauguaggugaggucccucgcggauggagcugaaaucagucgaagauaccagcuggcugcaacuguuuauuaaaaacacagcacugugcaaacacgaaaguggacguauacggugugacgccuncccggugccggaagguuaauugaugggguuagcgcaagcgaagcucuugaucgaagccccgguaaacggcggccguaacnauaacgguccuaagguagcgaaanuccuugucggguaaguuccgacnugcacgaauggcguaaugauggccaggcugucuccacccgagacucagugaaauugaacucgcugugnagaugcaguguacccgcggcaagacggaaagaccccgunaaccuuuacuauagcuugacacugaacauugagccuugauguguaggauaggugggaggcuuugaaguguggacgccagucugcauggagccgaccuugaaauaccacccuuuaauguuugauguucuaacguugacccguaauccggguugcggacagugucugguggguaguuugacugnggcggucuccuccuaaagaguaacggaggagcacgaagguuggcuaauccuggucggacaucaggagguuagugcaauggcauaagccagcuugacugcgagcgugacggcgcgagcaggugcgaaagcaggucauagugauccggugguucugaauggaagggccaucgcucaacggauaaaagguacuccgngganaacaggcugauaccgcccaagaguucauaucgacggcgguguuuggcancucgnugucggcucaucacauccuggggcugaaguaggucccaaggguauggcnguucgccauuuaaagugguacgcgagcuggguuuagaacgucgugagacaguucggucccuaucugccgugggcgcuggagaacugaggggggcugcuccuaguacgagaggaccggaguggacgcaucacugguguucggguugucaugccaauggcacugcccgguagcuaaaugcggaagagauaagugcugaaagcaucuaagcacgaaacuugccccgagaugaguucucccugacccuuuaaggguccugaaggaacguugaagacgacgacguugauaggccggguguguaagcgcagcgaugcguugagcuaaccgguacuaaugaaccgugaggcuuaaccu	<<<<<<<<......<<<<<<<<<<<....{[[..[[<<<<<<<[[<<......<<<<<<.[..(((.>>>.....<<<<<<<..<<<)))..].>>>......>>>>>>>...>>>....<<<....>>><<<<<<<....>>>>>>>.<<<<<<<<<.........>>>>>>>>>.>>...<<<<<<.....<......>......>>>>>.>.........<<....>>..<<<<<<.....<<.....>>....>>>>>>..(((..<<<<......<<<<<<<<<<<<<.<<<...<<<<<......>>>>>((......<<<.....))>>>...>>>...>>>>>>>>>>>>>...>>>>........<<<<<<<<.........>>>>>>>>......<<<<<..<<<<>>>>>..)))......]].>>>>>>>.]]...............<<....>>....]].........<<<<.....>>>>.............}....>>>>>>>>>>>.......<<<<..<<<<<<....>>>>>>..>>>>...<.<........>.>.<<<<<<....<<<<<<<<<<<<<..<<<...<<.....>>...>>>...<<....>>..<<<<.....>>>>.....>>>>>>>>>>>>>..<<.<...<<<<<<.....<<<<<<<<<..<<<<...<<<<<<......>>>>>>.>...>>>...<<<.<<<<<........>>>>>>>>....>>>>>>>>>...<<<.....>>>......>>>>>>......>.>>..<<<<<<....<<<<<....>>>>>.<<<<<<<<...<<<<<<<<<.....<<<...<<<.<<<<...<<.<<<<.....>>>>..>>...>>>>.>>>..>>.>.....>>>>>>.>>>...>>>>>>>.>...<<<<<<<<<<......>>>>>>>>>>....<<<......>>>...<<<<.<<<...<<<(((.....<<<<<<...........<<..<<<<<..<<........<<<<<.<<.....<<.......>>.....>>........<<<......>>>..>>>>>....>>..>>>>>.>>...........))).....>>>>>>.>>>...>>>>>>><<<<<<<<..>>>>>>>>....>>>>>><.<<<<<...<<<......<<<<<<<<....>>>>>>>>...>>>..>>>>>..>.....>>>>>><......<<.....<<<<<<.......>>>>>><<<<....<<<<<.<<...<<<<<<...<<.....>>.>>>>>>....((<<<.<<<...<<<...<<<....>>>...>>>...>>>..<<<<<........>>>>>))<<<<<<<<<<<<<...<<<<....<<<<..<<<..<<<<<<<<<<<....(((...>>>>>><<..<<<<...<<<<<<<<<<<<.<<.....>>>>>>>>>>..>>>>...>>>>...>><..<<<<<....>>>>>...>>>>>>...>>>...>>>.>........>>>>...>>....>>>>>>>>>>>.>>>..>>.....<<......>>>>>>>.<<<<.....>>>>..>>>>..<<<<....<<<<<<<<.<<...............<<<<<....<<..>>.....>>>>><<<<<<.....<<<...<<<<.....>>>>...>>>...>>>>>>............<<<<<<<<<..<<<.........>>>..<<<<<<<.....<<<....>>>.......>>>>>>>.<<<<<.<<<..<<<<<<<..<<<<.......<<<<<<.<<....>>..>>>>>>.......>>>>>>>>>..>>>>><<<<<<.......>>>>>>........<...........<<<<<.......>>>>>.....>....>>>>>..>>.>>>>>>>.....>>.>>>>>>>>.>>>>>>.....>.....<<<<<........>>>>>..<<<<<<<<.(((.[[......<<<<.[[<<<<..<<<<<.<<<.<<<<<.<<<<<<<<<<.<<<<<..............<<..<<.......<<<<<<<<....>>>>>>>>....>>............>>.....>>>>.>>>>>>>>>>>...<<<.<<<<<<.....>>>>>>>>>....>>>>>.>>>..>>>>>..<<<<.....>>>><<<<<<...........>>>>>>..<<...<<<<<<<...<<<<<<.......>>>>>>.....<<...(((>>....>>>>>>>...<<<<..<<<<....>>>>..>>>>.<<<....>>>.>>))).......<<<<<<<.((..>>>>..))>>>>>>>.............>>>>..]]>>>>.......<<<<...<<<<<<...<<.......>>...>>>>>>....>>>.>.......<<<<<.<<<<<<..<<<<<<<<<......>>>>>>..>>>.<<<<<.....>>>>>.....>>>>>..>...>>>.>>....<<<<<<<....>>>.>>>>....]]..)))>>>>>>>>....<<<<<<<...<<<<..<<<<<<<...............>>>>>>>.<<<<<...<<<<...<<<<<<<<<<<))).>>>>>>..>>>>>...>>>>.>>>>>...<<<....<<<<<...........>>>>>....>>>.>>>>.......>>>>>>>..<<<<<.....>>>>><....<<..<<<<<.......>>>>>....<<<<<<<<..<<....<<<<<....>>>>>...>>...>>>>>.>>>.....>>..>..>>>>>>>>.	((((((((......((((((((((.....(((..(((((((((((((......((((((.[..[[[.))).....((((((...(((]]]..].))).......))))))...)))....(((....)))(((((((....))))))).(((((((((.........))))))))).))...((((((.....(...[..)......))))).).........((....))...(((((.....((.]...))....)))))...((((.((((......((((.(((((.((.(((...(((((......)))))[[(...).(((.....]])))...)))...)).))))).))))...))))...)....((((((((..[......))))))))......(((((].[[[[)))))..)))......)).))))))).))...............((....))....))......(..((((.....))))............)).....)))))))))).....(.((((..((((((....))))))..)))).[.(.(........).).((((((....(((((((((((((..(((...((.....))...)))...((....))..((((.....)))).....)))))))))))))..((.(...((((((.....((((((((((.((((...(((((........)))))...)[)))...(((.(((((.......<))))))))..).))))))))).(.((.......))...)..))))))......).))..((((((....(((((....))))).((((((((..((((((((((.....(((...((..((((...(.(.(((.....)))...))...))))..))..)).).....)))))).)))..)))))))).)...(((((((((........)))))))))....(((......)))...((((.(((...((([[[...(.((((((.....(.....((..(((((..(((.....{.(((((.((......(........).....).)....(..(((......)))).)))))...)))..))))).))...........]]].)...))))))))))...)))))))((((((((()))))))))....))))))(.(((((...(((......((((((((....))))))))...)))..)))))..).....))))))(......((.....((((((.......))))))((((....((((..((..(((((((...((.....)).))))))....[[(((.(((.(.(((...(((....)))...)))..))))..(((((........)))))]](((((((((((((...((((....((((..(((..((((((((((((...{{{.).))))))((..((((...((((((((((((.((.....))))))))))..))))..[))))...))(..(((((....)))))...))))))...)))...))))(..).....))))...))....))))))))))).))).))).....((......)).)))).((((.....))))..))))..((((....((((((((.((..(....(.......(((((....(.{..).....)))))((((((.....(((...((((....]))))...)))...))))))(...).......(((((((((.].((.........))...(((((((.....(((....))).......))))))).}((((.(((..(((((((..(((........((.((..((....))...)).))........))))))))..)))))(.(((.........))).)........((..........(((((.......)))))..)..)....))))...)).))))))).)..))).)))))))).)))))).....)).{..(((((.....]}.)))))..((((((((.(((.((......((((.((((((..(((((.(((.(((((.(((((((((..(((((...........(...(...(........((..(((....)))..)).....).............)...)..)))).).)))))))))...(((.((((((.....)))))))))....))))).)))..)))))..(((......[)))((((((..........]))))))([((...(((((((.(.(((((.........)))))...).((][.[[[))....)))))))...((((..((((..{.))))..)))).(((....))).))]]].].....(((((((.((..]]]]..))))))))).....)}......))))..))))))......((((..(.((((((...((.......))...))))))...).)).).)......(.((.((((((..(((((((((......))))))..))).(((((.....))))).....)))))..)...))..).....(..((((....))).)..)..>.))..)))))))))))[...(((((((...((((..(((((((.....(....)....))))))).(((((...((((...(((((((((((}}}.))))))..)))))...)))).)))))...(((....((((.....}.......))))....))).))))..]....)))))))(.((((((..).)))))(....((..(((((.......)))))....((((((((..((....(((((....)))))...))...))))).))).....))..).))))))))).	Cryo-EM structure of an E. coli rotated ribosome complex bound with RF3-ppGpp and p/E-tRNAPhe (Composite state I-C); 23S Ribosomal RNA