1y39 D 58 2.8 RF02541 URS000080E362_562 15734647 0003735 0005840 562 nccaggauguaugcuuagaagcagcaaucauuuaaagagugcguaauagcucacuggu <<<<<.<<<..<<<<.......>>>>..>>>.........<<......>>...>>>>> (((((.(((..(((.........)))..))).....(...((......)).).))))) Co-evolution of protein and RNA structures within a highly conserved ribosomal domain; 58 Nucleotide Ribosomal 23S RNA Domain 2qux I 25 2.44 URS000080DEBC_32630 18066080 32630 ggcacagaagauauggcuucgugcc <<<<<.<<<<......>>>>>>>>> (((((.((((......))))))))) PP7 coat protein dimer in complex with RNA hairpin; RNA (25-MER) 2qux L 25 2.44 URS000080DEBC_32630 18066080 32630 ggcacagaagauauggcuucgugcc <<<<<.<<<<......>>>>>>>>> (((((.((((......))))))))) PP7 coat protein dimer in complex with RNA hairpin; RNA (25-MER) 3dvz A 27 1.0 URS000080E28F_32630 19228585 32630 ugcuccuaguacgagaggaccggagug .<<<<<...............>>>>>. .(((((.....(....)....))))). Crystal Structure of the Sarcin/Ricin Domain from E. coli 23 S rRNA; Sarcin/Ricin Domain from E. Coli 23 S rRNA 3dw4 A 27 0.97 URS000080E28F_32630 19228585 32630 ugcnccuaguacgagaggaccggagug .<<<<<...............>>>>>. .(((((.....(....)....))))). Crystal Structure of the Sarcin/Ricin Domain from E. COLI 23 S rRNA, U2650-OCH3 modified; Sarcin/Ricin Domain from E. Coli 23 S rRNA 3dw6 A 27 1.0 URS000080E28F_32630 19228585 32630 ugcnccuaguacgagaggaccggagug .<<<<<...............>>>>>. .((((.....(....)....)).)). Crystal Structure of the Sarcin/Ricin Domain from E. COLI 23 S rRNA, U2650-SECH3 modified; Sarcin/Ricin Domain from E. Coli 23 S rRNA 3rg5 A 86 2.0 RF01852,RF00005 URS0000624339_10090 21629646 0030533 0006412 10090 gcccggaugauccucaguggucuggggugcaggcuucaaaccuguagcuguuuagcgacagagugguucaauuccaccuuucgggc <<<<<<<....<<<<<<....>>>>>><<<<<<.......>>>>>>.<<<<<....>>>>>.<<<<.......>>>>..>>>>>>> (((((((.(..((((((..[.))))))((((((.......)))))).(((((....))))).((((..]....))))).))))))) Crystal Structure of Mouse tRNA(Sec); tRNA(Sec) 3rg5 B 86 2.0 RF01852,RF00005 URS0000624339_10090 21629646 0030533 0006412 10090 gcccggaugauccucaguggucuggggugcaggcuucaaaccuguagcuguuuagcgacagagugguucaauuccaccuuucgggc <<<<<<<....<<<<<<....>>>>>><<<<<<.......>>>>>>.<<<<<....>>>>>.<<<<.......>>>>..>>>>>>> (((((((.(..((((((..[.))))))((((((.......)))))).(((((....))))).((((..]....))))).))))))) Crystal Structure of Mouse tRNA(Sec); tRNA(Sec) 4al5 B 18 2.0 URS000080DECD_287 22522703 287 cacugccguauaggcagc ..<<<<<.....>>>>>. ..(((((.....))))). Crystal structure of the Csy4-crRNA product complex; 5'-R(*UP*UP*CP*AP*CP*UP*GP*CP*CP*GP*UP*AP*UP*AP *GP*GP*CP*AP*GP*C)-3' 4ed5 D 10 2.0 URS000080E27D_32630 23519412 32630 uuuuuauuuu .......... .......... Crystal structure of the two N-terminal RRM domains of HuR complexed with RNA; 5'-R(*A*UP*UP*UP*UP*UP*AP*UP*UP*UP*U)-3' 4nxh A 27 1.158 URS000080E119_562 24766131 562 ugcnccuaguacgagaggaccggagug .<<<<<...............>>>>>. .(((((.....(....)....))))). 2'-Trifluoromethylthiouridine-modified E. coli 23S rRNA Sarcin Ricin Loop; 23S ribosomal RNA Sarcin Ricin Loop 5d99 A 27 0.97 URS000080E28F_268588 27050127,19228585 268588 ugcnccuaguacgagaggaccggagug .<<<<<...............>>>>>. .(((((.....(....)....))))). 3DW4 redetermined by direct methods starting from random phase angles; RNA (27-MER) hairpin from sarcin-ricin domain of E. coli 23S rRNA 5f8i B 12 2.503 URS000080DEB1_32630 27339134 32630 ggucucucucgu ............ ............ Enterovirus 71 Polymerase Elongation Complex (C1S2/3 Form); RNA (35-MER) 5f8m B 12 2.83 URS000080DEB1_32630 27339134 32630 caggucucucuc ............ ............ Enterovirus 71 Polymerase Elongation Complex (C3S4/5 Form); RNA (35-MER) 5m73 A 145 3.4 RF00017,RF01856 URS0000A7784F_9606 27899666 0006617 0005786 9606 ngguguccgcacuaaguucggcaucaauauggugaccucccgggagcgggggaccaccagguugccuaaggaggggugaaccggcccaggucggaaacggagcaggucaaaacucccgugcugaucaguagugggaucgcgccua <<<<<<<<.<<<<<...<<<<<<<<<<<.<<<<<..<<<<<<....>>>>>>..>>>>>.>>>>........<<<<<.....<<<<....<<<....>>>....>>>>...>>>>>.>>>>>>>....>>>>>>>...>>>>>>. ((((((((.(((((.(.(((((((((((.(((((..((((((....))))))..))))).))))......(.((((......((((....(((....)))....))))....)))))))))))).)..)))))))...)))))). Structure of the human SRP S domain with SRP72 RNA-binding domain; Human gene for small cytoplasmic 7SL RNA (7L30.1) 5on6 AR 3149 3.1 RF02540,RF02543 URS000061F377_559292 29429877 0003735 0005840 559292 uugaccucaaaucagguaggaguacccgcugaacuuaagcauaucaauaagcggaggaaaagaaaccaaccgggauugccuuaguaacggcgagugaagcggcaaaagcucaaauuugaaaucugguaccuucggugcccgaguuguaauuuggagagggcaacuuuggggccguuccuugucuauguuccuuggaacaggacgucauagagggugagaaucccguguggcgaggagugcgguucuuuguaaagugccuucgaagagucgaguuguuugggaaugcagcucuaagugggugguaaauuccaucuaaagcuaaauauuggcgagagaccgauagcgaacaaguacagugauggaaagaugaaaagaacuuugaaaagagagugaaaaaguacgugaaauuguugaaagggaagggcauuugaucagacaggccagcaucaguuuugguggcaggauaaauccauaggaauguagcuugccucgguaaguauuauagccugugggaauacugccagcugggacugaggacugcgacguaagucaaggaugcuggcauaaugguuauaugccgcccgucuugaaacacggaccaaggagucuaacgucuaugcgaguguuuggguguaaaacccauacgcguaaugaaagugaacguagguuggggccucgcaagaggugcacaaucgaccgauccugaugucuucggauggauuugaguaagagcauagcuguugggacccgaaagauggugaacuaugccugaauagggugaagccagaggaaacucugguggaggcucguagcgguucugacgugcaaaucgaucgucgaauuuggguauaggggcgaaagacuaaucgaaccaucuaguagcugguuccugccgaaguuucccucaggauagcagaagcucguaucaguuuuaugagguaaagcgaaugauuagagguuccggggucgaaaugaccuugaccuauucucaaacuuuaaauauguaagaaguccuuguuacuuaauugaacguggacauuugaaugaagagcuuuuagugggccauuuuugguaagcagaacuggcgaugcgggaugaaccgaacguagaguuaaggugccggaauacacgcucaucagacaccacaaaagguguuaguucaucuagacagccggacgguggccauggaagucggaauccgcuaaggaguguguaacaacucaccggccgaaugaacuagcccugaaaauggauggcgcucaagcguguuaccuauacucuaccgucaggguugauaugaugcccugacgaguaggcaggcguggaggucagugacgaagccuagaccguaaggucgggucgaacggccucuagugcagaucuuggugguaguagcaaauauucaaaugagaacuuugaagacugaaguggggaaagguuccacgucaacagcaguuggacguggguuagucgauccuaagagauggggaagcuccguuucaaaggccugauuuuaugcaggccaccaucgaaagggaauccgguuaagauuccggaaccuggauauggauucuucacgguaacguaacugaauguggagacgucggcgcgagcccugggaggaguuaucuuuucuucuuaacagcuuaucaccccggaauugguuuauccggagauggggucuuauggcuggaagaggccagcaccuuugcuggcuccggugcgcuugugacggcccgugaaaauccacaggaaggaauaguuuucaugccaggucguacugauaaccgcagcaggucuccaaggugaacagccucuaguugauagaauaauguagauaagggaagucggcaaaauagauccguaacuucgggauaaggauuggcucuaagggucggguacgaucaacuuagaacugguacggacaaggggaaucugacugucuaauuaaaacauagcauugcgauggucagaaagugauguugacgcaaugugauuucugcccagugcucugaaugucaaagugaagaaauucaaccaagcgcggguaaacggcgggaguaacuaugacucucuuaagguagccaaaugccucgucaucuaauuagugacgcgcaugaauggauuaacgagauucccacugucccuaucuacuaucuagcgaaaccacagccaagggaacgggcuuggcagaaucagcggggaaagaagacccuguugagcuugacucuaguuugacauugugaagagacauaguuucuuuacuuauucaaugaagcggagcuggaauucauuuuccacguucuagcauucaaggucccauucggggcugauccggguugaagacauugucagguggggaguuuggcuggggcggcacaucuguuaaacgauaacgcagauguccuaaggggggcucauggagaacagaaaucuccaguagaacaaaaggguaaaagcccccuugauuuugauuuucagugugaauacaaaccaugaaaguguggccuaucgauccuuuagucccucggaauuugaggcuagaggugccagaaaaguuaccacagggauaacuggcuuguggcagucaagcguucauagcgacauugcuuuuugauucuucgaugucggcucuuccuaucauaccgaagcagaauucgguaagcguuggauuguucacccacuaauagggaacgugagcuggguuuagaccgucgugagacagguuaguuuuacccuacugaugaauguuaccgcaauaguaauugaacuuaguacgagaggaacaguucauucggauaauugguuuuugcggcugucugaucaggcauugccgcgaagcuaccauccgcuggauuauggcugaacgccucuaagucagaauccaugcuagaacgcggugauuucuuugcuccacacaauauagauggauacgaauaaggcguccuuguggcgucgcugaaccauagcaggcuagcaacggugcacuuggcggaaaggccuugggugcuugcuggcgaauugcaaugucauuuugcguggggauaaaucauuuguauacgacuuagauguacaacgggguauuguaagcaguagaguagccuuguuguuacgaucugcugagauuaagccuuuguugucugauuugu ........................<<<<<<.....<......>......>>>>>.>.........<<....>>..<<<<<......<<.....>>.....>>>>>..<<<..<<.......<<.<<<<<<...>>>>>>.>>.......>>....<<<<<<<.<<<<<.<<<<<<<<<<<<<<<....<<<<......>>>>.(.......<<<......)>>>..>.>>>>>>>>..>>>>>>.>....>>>>>>>>>>>........<<<<<<<........>>>>>>>.....<<<<<..((((((>>>>>..>>>..................................<<....>>...............<<<<....>>>>..................................<<<<<.<<<<<<.....<<<<<<<.<<<<<<<<<<<<<<<.....<<<<<<<<<......<<<<<......>>>>>.......>>>>>>>.>.>.>>>>>.>>>>>>>>>>........<<<....>>>.....>>>>>>>....>>>>>>.>>>>>..<<<<........>>>><<<<<<....<<<<<<.<<<<<<..<<<...<<<<.....>>>>...>>>...<<....>>.......<<<<<..<<<<<....>>>>>...>>>>>.<<<<<<<<...<<....>>...>>>.>>>.>>....>>>>>>.>>>>>>..<<.<...<<<<<<.....<<<<<<<<<..<<<....<<<<<<<....>>>>>>>.....>>>...<<<..<<.<<........>>>>.>>>....>>>>>>>>>...<<.......>>......>>>>>>......>.>>..<<<<<<....<.<<<....>>>(><<<<<<<<<<...<<<.<<<<<<<.....<<<....<<<....<<<<...<<<<<.......>>>>>.>>>>....>>>..>.>>.....>>>>>...<<<<.<<<<.........>>>>.>>>>.....>>>>>.>>>>>>>>.>>).<<<<.<<<<<.....>>>>>.>>>>....<<<......>>>...<<<<<<<..<<<<(((.....<<<<<<......<..........<<<.<<<<<<<<<<.......<<<<<.<<<...<<.........>>...>>>.........<<......>>...>>>>>...>>>>>>>>>>>>>..........))).>....>>>>>>.>>>>..>>>>>>><<<<<<<<<.........>>>>>>>>>....>>>>>><.<<<<<<<..<<......<<<<.<<<<....>>>>>>>>...>>.>>>>>>>..>.....>>>>>><<.....<<.....<<<<<<.......>>>>>><<<<.....<<<<<.<<...<<<<<<...<<.....>>.>>>>>>....((<<<<<<...<<....<<<....>>>........<<<<<<........>>>>>>....>>....>>...<<<<<........>>>>>))<<<<.<<<<<<<.....<<<....>>>.......<<<<<<...<<<<.<<<<<<<.<<<<<<<<<<..[[[..>>>>>><...<<<<<....<<<<<<....<<<.....>>>....>>>>>>.....>>>>>....><<<<<<<<....>>>>>>>>>>>>...>>>>>>>.>>>>.........>>>>>>..........>>>..>>>>>>>>>>>>..>>.....<<......>>>>>>>.<<<<.....>>>>..>>>>..<<<<.....<<<<<<<.<<...............<<<<<....<....>.....>>>>><<.<<<<<<<<<<......>>>>..>>>>>>.>>............<<<<<<<<<..<<<.........>>>..<<<<<<<....<<<<.....>>>>......>>>>>>>.<.<<..<<<..<<<<<<.<..<<<.....<<<<....>>>>.....>>>>>>>>..>>>>><<<<<<.......>>>>>>........<...........<<<<<.......>>>>>.....>.....>>.>..>>.>>>>>>>.....>>.>>>>>>>..>>>>>>....>>....<<<<<........>>>>>....<<<<<..<<<.<<......<<<<.<<<<<<..<<<<<.<<<<<<<<..<<<<<<<<.......>>>>>>>>...<<<<<.....<<<<..<<............>>...............<<<<<<....>>>>>>..>>>>..>>>>>.....>>>>>>>>..>>>>>...<<<.....>>>..<<<<<<...........>>>>>>..<<...<<<<<<<...<<<<<<.......>>>>>>.....<<...(((>>....>>>>>>>...<<<.<<<<<.......>>>>.>>>>.<<<....>>>.>>)))......<<<<<<<..<<<<.))))))>>>>>>>>>>>.........>>>>..>>>>>>.......<<.<...<<<<<<...<<.......>>...>>>>>>....>.>.>........<<<<.<<<<<<..<.<<<<<<<......>>>>>>>...>.<<<.........>>>.....>>>>>..>...>>>.>.....<<<<<<<....>>>.>>>>....>>..>>>.>>>>>....<<<<<<<<..<<<<...<<<<<<...............>>>>>>..<<<<<...<<<<....<<<<<<<<<.]]]..>>>>..>>>>>...>>>>..>>>>>.<<<<...<<<<<...........>>>>>...>>>>.>>>>....>>>>>>>>.......<<<<<<.<<<.<<....<<..........<<<<<<.....>>>>>>......>>.......<<<<<<...<<<<<.<..<<<......>>>..>.>>>>>.>>>>>>.............>>.>>>.>>>>>>..<<<<<.<.............>.....<<<<<<<<<.<<<....<<<<....<<<<<......>>>>>...>>>>...>>>....>>>>.>>>>>..>>>>>.. ........................(((((......(...[..).......)))).).........((....))...((((......((.]...)).....))))...((((.........(((.((((((...)))))).))....)........((((((.(((((.(((((.(((((((((...({((((......)))))[[(...).(((....}]])))....))))))))..).))).))....)))))))))))...)....(((((((........))))))).....(((((..[[[[[[)))))..)))..................................((....))............(..((((....))))............).....................(((((.((((((.....(((((((((((((((((((((((.......(((((((......((((........)))).......))))))).....))))).))))))))))........(((....)))....))))))))....)))))).))))).[((((........))))((((((....((((((.((((((..(((...(((.......)))...)))...((....)).......(((((..(((((....)))))...))))).((((((((....(....)....))).))).))....)))))).))))))..((.(...((((((.....(((((((((..((((...(((((((....)))))))...)[)))...(((..((.((.......<)))).)))....))))))))).(.((.......))...)..))))))......).))..((((((....(.(((....))).)((((((((((...(((.(((((((.....(((....(((..(.((((...(..(((.....)))..).)))).)..)))..)).).....)))))...((((.((((.(......))))).)))).....))))).)))))))).))..((((.(((((.....))))).))))....(((......)))...(((((((...((([[[...(.((((((......(..........(((.((((((((((.......(((((.(((...((.........))...))).....(...((......)).).)))))...)))))))))))))..........]]].)....))))))))))...)))))))(((((((((.........)))))))))....))))))(.((((((((.((......((((.((((....))))))))...))))))))))..).....))))))((.....((.....((((((.......))))))((((.....((((..((...(((((....((.....))..)))))....[[(((.((...((....(((....)))........(..................)....))....))...(((((........)))))]]((((.((((((((...((((....)))...(.<.((((((...((((.((((((((((((((((((...{{..))))))(...(((((....(((((.....(((.....))).....))))).....)))))....)(((((((......))))))))))).).))))))).))))(...)....))))))...))....))))..)))))))).)))..)).....((......)).)))).((((.....))))..))))..((((.....(((((((.((..(....(.......(((((....(.{..).....)))))((.((((((((((.(...)))))..)))))).))(...).......(((((((((.].((.........))...(((((((....((((.....))))......))))))).}.(((.(((..((((((.(...((.....((((....)))).....)).)))))..)))))(((((.........)))))........((..........(((((.......)))))..)..)....)))....)).))))))).)..))).)))))))..))))))....)).{..(((((.....]}.)))))....(((((..(((.((......((((.((((((..(((((.((((((((..(((((((.........)))))))....((((.....((((..((............))...........>...(((((......)))))..))))..))))......))))))))..)))))..(((......[)).)((((((..........]))))))([((...(((((((.(.((((((.......))))))...).((][.[[[))....)))))))...(((..((((....{..))))..))).(((....))).))]]].].....((((((..((((.]]]]]]))))))))))....)}....))))..)))))).......((.(.(.((((((...((.......))...))))))...)).).)........((((.((((((..(.(((((((......))))))..).).(((.(.....).))).....)))))..)...))).).....(((((((....))).))))..>.))..))).)))))....((((((((..((((.(.(((((......(....).....))))).)(((((...((((....((((((((((}}..)))))..)))))...))))..))))).((((...((((.............))))...)))).))))....)))))))).......((((((.(((.((....((.(........(((((((..).)))))).....))).......((((((...(((((.(..(((......)))..).))))).)))))).............)).))).))))))..(((((.(..(.......)..)...(.(((((((((.(((....((((.(..(((..(..)....)))..)))))...)))....)))).)))))).))))).. Crystal structure of haemanthamine bound to the 80S ribosome; 25S ribosomal RNA 5tf6 B 71 2.3 RF00026 URS0000B21DFD_4932 28045380 0030621 0000244,0000353 0005688,0046540 4932 ggucaauuugaaacaauacagagaugaucagcaguuccccugcauaaggaugaaccguuuuacaaagagac .<<<..<<<<...................<<<.<<<<.<<<.....>>>..>>>>.>>>...>>>>..>>> .(((..((((...................(((.((((.(((.....)))..)))).)))...))))..))) Structure and conformational plasticity of the U6 small nuclear ribonucleoprotein core; U6 snRNA 5vaj C 11 1.95 URS0000BC4688_32630 28854734 32630 gacaccuganc ........... ........... BhRNase H - amide-RNA/DNA complex; RNA (5'-R(*GP*AP*CP*AP*CP*CP*UP*GP*AP*(URU)P*C)-3') 6h9i E 25 2.29 URS00021ED981_76114 30397343 76114 ucgguguuccccgcgcaucgcgggn ........<<<<<<<...>>>>>>> ........(((((((...))))))) Csf5, CRISPR-Cas type IV Cas6 crRNA endonuclease; crRNA 6hhq AR 3147 3.1 RF02540,RF02543 URS000061F377_4932 30759226 0003735 0005840 4932 uugaccucaaaucagguaggaguacccgcugaacuuaagcauaucaauaagcggaggaaaagaaaccaaccgggauugccuuaguaacggcgagugaagcggcaaaagcucaaauuugaaaucugguaccuucggugcccgaguuguaauuuggagagggcaacuuuggggccguuccuugucuauguuccuuggaacaggacgucauagagggugagaaucccguguggcgaggagugcgguucuuuguaaagugccuucgaagagucgaguuguuugggaaugcagcucuaagugggugguaaauuccaucuaaagcuaaauauuggcgagagaccgauagcgaacaaguacagugauggaaagaugaaaagaacuuugaaaagagagugaaaaaguacgugaaauuguugaaagggaagggcauuugaucagaggccagcaucaguuuugguggcaggauaaauccauaggaauguagcuugccucgguaaguauuauagccugugggaauacugccagcugggacugaggacugcgacguaagucaaggaugcuggcauaaugguuauaugccgcccgucuugaaacacggaccaaggagucuaacgucuaugcgaguguuuggguguaaaacccauacgcguaaugaaagugaacguagguuggggccucgcaagaggugcacaaucgaccgauccugaugucuucggauggauuugaguaagagcauagcuguugggacccgaaagauggugaacuaugccugaauagggugaagccagaggaaacucugguggaggcucguagcgguucugacgugcaaaucgaucgucgaauuuggguauaggggcgaaagacuaaucgaaccaucuaguagcugguuccugccgaaguuucccucaggauagcagaagcucguaucaguuuuaugagguaaagcgaaugauuagagguuccggggucgaaaugaccuugaccuauucucaaacuuuaaauauguaagaaguccuuguuacuuaauugaacguggacauuugaaugaagagcuuuuagugggccauuuuugguaagcagaacuggcgaugcgggaugaaccgaacguagaguuaaggugccggaauacacgcucaucagacaccacaaaagguguuaguucaucuagacagccggacgguggccauggaagucggaauccgcuaaggaguguguaacaacucaccggccgaaugaacuagcccugaaaauggauggcgcucaagcguguuaccuauacucuaccgucaggguugauaugaugcccugacgaguaggcaggcguggaggucagugacgaagccuagaccguaaggucgggucgaacggccucuagugcagaucuuggugguaguagcaaauauucaaaugagaacuuugaagacugaaguggggaaagguuccacgucaacagcaguuggacguggguuagucgauccuaagagauggggaagcuccguuucaaaggccugauuuuaugcaggccaccaucgaaagggaauccgguuaagauuccggaaccuggauauggauucuucacgguaacguaacugaauguggagacgucggcgcgagcccugggaggaguuaucuuuucuucuuaacagcuuaucaccccggaauugguuuauccggagauggggucuuauggcuggaagaggccagcaccuuugcuggcuccggugcgcuugugacggcccgugaaaauccacaggaaggaauaguuuucaugccaggucguacugauaaccgcagcaggucuccaaggugaacagccucuaguugauagaauaauguagauaagggaagucggcaaaauagauccguaacuucgggauaaggauuggcucuaagggucggguacgaucaacuuagaacugguacggacaaggggaaucugacugucuaauuaaaacauagcauugcgauggucagaaagugauguugacgcaaugugauuucugcccagugcucugaaugucaaagugaagaaauucaaccaagcgcggguaaacggcgggaguaacuaugacucucuuaagguagccaaaugccucgucaucuaauuagugacgcgcaugaauggauuaacgagauucccacugucccuaucuacuaucuagcgaaaccacagccaagggaacgggcuuggcagaaucagcggggaaagaagacccuguugagcuugacucuaguuugacauugugaagagacauaguuucuuuacuuauucaaugaagcggagcuggaauucauuuuccacguucuagcauucaaggucccauucggggcugauccggguugaagacauugucagguggggaguuuggcuggggcggcacaucuguuaaacgauaacgcagauguccuaaggggggcucauggagaacagaaaucuccaguagaacaaaaggguaaaagcccccuugauuuugauuuucagugugaauacaaaccaugaaaguguggccuaucgauccuuuagucccucggaauuugaggcuagaggugccagaaaaguuaccacagggauaacuggcuuguggcagucaagcguucauagcgacauugcuuuuugauucuucgaugucggcucuuccuaucauaccgaagcagaauucgguaagcguuggauuguucacccacuaauagggaacgugagcuggguuuagaccgucgugagacagguuaguuuuacccuacugaugaauguuaccgcaauaguaauugaacuuaguacgagaggaacaguucauucggauaauugguuuuugcggcugucugaucaggcauugccgcgaagcuaccauccgcuggauuauggcugaacgccucuaagucagaauccaugcuagaacgcggugauuucuuugcuccacacaauauagauggauacgaauaaggcguccuuguggcgucgcugaaccauagcaggcuagcaacggugcacuuggcggaaaggccuugggugcuugcuggcgaauugcaaugucauuuugcguggggauaaaucauuuguauacgacuuagauguacaacgggguauuguaagcaguagaguagccuuguuguuacgaucugcugagauuaagccuuuguugucugauuugu 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........................(((((......(...[..).......)))).).........((....))...((((......((.]...)).....))))...((((.........(((.((((((...)))))).))....)........((((((.(((((..((((.(((((((((...({((((......)))))[[(...).(((....}]])))....))))))))..).))).).....)))))))))))...)....(((((((........))))))).....(((((..[[[[[[)))))..)))..................................((....))............(..((((....))))............).....................(((((.((((((...(((((((((((((((((((((((.......(((((((......((((........)))).......))))))).....))))).))))))))))........(((....)))....))))))))....)))))).))))).[((((........))))((((((....((((((.((((((..(((...(((.......)))...)))...((....)).......(((((..(((((....)))))...))))).((((((((....(....)....))).))).))....)))))).))))))..((.(...((((((.....(((((((((..((((...(((((((....)))))))...)[)))...(((..((.((.......<)))).)))....))))))))).(.((.......))...)..))))))......).))..((((((....(.(((....))).)((((((((((...(((.(((((((.....(((....(((..(.((((...(.((((.....)))).).)))).)..)))..)).).....)))))...((((.((((.(......))))).)))).....))))).)))))))).))..((((.(((((.....))))).))))....(((......)))...(((((((...((([[[...(.((((((......(..........(((.((((((((((.......(((((.(((...((.........))...))).....(...((......)).).)))))...)))))))))))))..........]]].)....))))))))))...)))))))(((((((((.........)))))))))....))))))(.((((((((.((......((((.((((....))))))))...))))))))))..).....))))))((.....((.....((((((.......))))))((((.....((((..((...(((((....((.....))..)))))....[[(((.((...((....(((....)))........(..(.............).)....))....))...(((((........)))))]]((((.((((((((...((((....)))...(.<.((((((...((((.((((((((((((((((((...{{..))))))(...(((((....(((((.....(((.....))).....))))).....)))))....)(((((((......))))))))))).).))))))).))))(...)....))))))...))....))))..)))))))).)))..)).....((......)).)))).((((.....))))..))))..((((.....(((((((.((..(....(.......(((((....(.{..).....)))))((.(((((((((((....)))))..)))))).))(...).......(((((((((.].((.........))...(((((((....((((.....))))......))))))).}.(((.(((..((((((.(...((.....((((....)))).....)).)))))..)))))(((((.........)))))........((..........(((((.......)))))..)..)....)))....)).))))))).)..))).)))))))..))))))....)).{..(((((.....]}.)))))....(((((..(((.((......((((.((((((..(((((.((((((((..(((((((.........)))))))....((((.....((((..(((..........)))...........>...((((((....))))))..))))..))))......))))))))..)))))..(((......[)).)((((((..........]))))))([((...(((((((.(.((((((.......))))))...).((][.[[[))....)))))))...(((..((((....{..))))..))).(((....))).))]]].].....((((((..((((.]]]]]]))))))))))....)}....))))..)))))).......((.(.(.((((((...((.......))...))))))...)).).)........((((.((((((..(.(((((((......))))))..).).(((.(.....).))).....)))))..)...))).).....(((((((....))).))))..>.))..))).)))))....((((((((..((((.(.(((((......(....).....))))).)(((((...((((....((((((((((}}..)))))..)))))...))))..))))).((((...((((.............))))...)))).))))....)))))))).......((((.(.(((.((....((.(........(((((((..).)))))).....))).......((((((...(((((.(..(((......)))..).))))).)))))).............)).))).).))))..(((((.(..(.......)..).....(((((((((.(((....((((.(..(((.((..)..).)))..)))))...)))....)))).)))))..))))).. Crystal structure of compound C45 bound to the yeast 80S ribosome; 25S ribosomal RNA 6ozl C 15 2.1 31444105 32630 ciauaugcaugcauu ............... ............... Crystal structure of Mus musculus (Mm) Endonuclease V in complex with a 23mer RNA oligo containing an inosine after a 2 min soak in Mn2+; DNA/RNA (5'-R(P*CP*GP*GP*UP*AP*AP*CP*CP*C)-D(P*I)-R(P*AP*UP*AP*UP*GP*CP*AP*UP*GP*CP*AP*UP*U)-3') 6ozn C 15 1.9 31444105 32630 ciauaugcaugcauu ............... ............... Crystal structure of Mus musculus (Mm) Endonuclease V in complex with a 23mer RNA oligo containing an inosine after a 15 min soak in 10 mM Mn2+; DNA/RNA (5'-R(P*CP*GP*GP*UP*AP*AP*CP*CP*C)-D(P*I)-R(P*AP*UP*AP*UP*GP*CP*AP*UP*GP*CP*AP*UP*U)-3') 7k98 C 77 2.19 RF00005 URS000035A243_83332 33885823 0030533 0006412 83332 ggccagguagcucagucgguaugagcguccgccugaaaagcggaaggucggcgguucgaucccgccccuggccacca <<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<.......>>>>>>>>>>>>.... (((((((..((((.....[...)))).(((((.......))))).....(((((..]....)))))))))))).... Preaminoacylation complex of M. tuberculosis PheRS with cognate precursor tRNA and 5'-O-(N-phenylalanyl)sulfamoyl-adenosine (F-AMS); tRNA(Phe) 7l3r A 27 1.01 URS000080DEF4_32630 33856457 32630 ugcuccuaguacgagaggaccggngug .<<<<<...............>>>>>. .(((((.....(....)....))))). 23S Sarcin Ricin Loop with a 3-deazapurine A2670; RNA (27-MER) 7oax A 51 2.24 URS0002311967_32630 34112799 32630 gcuagcuggaggggcgccaguucgcuggugguugggugcggucggcuagcc <<<<<<<......<<<<<<<<..>>>>>>........>>....>>>>>>>. (((((((.(....(((((((....)))))........))...)))))))). Crystal structure of the Chili RNA aptamer in complex with DMHBO+; Chili RNA Aptamer 7oax C 51 2.24 URS0002311967_32630 34112799 32630 gcuagcuggaggggcgccaguucgcuggugguugggugcggucggcuagcc <<<<<<<......<<<<<<<....>>>>>........>>....>>>>>>>. (((((((.(....(((((((....)))))........))...)))))))). Crystal structure of the Chili RNA aptamer in complex with DMHBO+; Chili RNA Aptamer 7qr3 C 69 2.18 RF00622 URS0002617738_9598 3.1.-.- 0004540 9598 gggggccacagcagaagcguucacgucgcggccccugucagccauugcacuccggcugcgaauucugcu <<<<<<<..(((((((<<<.......>>>>>>>>>>..<<<<<..........>>>>>....))))))) (((((((..[[[[[[[(((.......))))))))))..(((((..........)))))....]]]]]]] Chimpanzee CPEB3 HDV-like ribozyme; chimpanzee CPEB3 ribozyme 7qsh A 25 0.86 URS000268136D_32630 35687141 32630 cuccuaguacgagaggaccggagug <<<<...............>>>>.. ((((.....(....)....)))).. 23S ribosomal RNA Sarcin Ricin Loop 27-nt fragment containing a Xanthosine residue at position 2648; 23S ribosomal RNA Sarcin Ricin Loop 27-nucleotide fragment 7xd8 B 12 2.85 URS00026177B2_32630 36577062 32630 acgauuauaucc ............ ............ Crystal Structure of Dengue Virus Serotype 2 (DENV2) Polymerase Elongation Complex (Native Form); RNA (30-mer) 7xd8 E 11 2.85 URS00026177B2_32630 36577062 32630 cgauuauaucc ........... ........... Crystal Structure of Dengue Virus Serotype 2 (DENV2) Polymerase Elongation Complex (Native Form); RNA (30-mer) 7xd9 E 13 2.58 URS00026177B2_32630 36577062 32630 aacgauuauaucc ............. ............. Crystal Structure of Dengue Virus serotype 2 (DENV2) Polymerase Elongation Complex (CTP Form); RNA (30-mer) 7xd9 K 16 2.58 URS00026177B2_32630 36577062 32630 ggcaacgauuauaucc ................ .()............. Crystal Structure of Dengue Virus serotype 2 (DENV2) Polymerase Elongation Complex (CTP Form); RNA (30-mer) 8tqx D 19 2.09 38383158 64320 ugaucugggcccaguauca ................... ................... Crystal structure of the Zika virus stem-loop A (SLA) bottom stem; Zika virus stem-loop A (SLA) bottom stem 8tsv C 25 1.51 38383158 64320 cagacugcgagggcccucgaguuug ......................... ......................... Crystal structure of the Zika virus stem-loop A (SLA) top stem; Zika virus stem-loop A (SLA) top stem 8tsv D 25 1.51 38383158 64320 cagacugcgagggcccucgaguuug ......................... ......................... Crystal structure of the Zika virus stem-loop A (SLA) top stem; Zika virus stem-loop A (SLA) top stem