6rw4	A	955	2.97	RF00177	URS0001A24B4C_9606	32522994		0003735		0005840	9606	aauagguuugguccuagccuuucuauuagcucuuaguaagauuacacaugcaagcauccccguuccagugaguucacccucuaaaucaccacgaucaaaagggacaagcaucaagcacgcagcaaugcagcucaaaacgcuuagccuagccacacccccacgggaaacagcagugauuaaccuuuagcaauaaacgaaaguuuaacuaagcuauacuaaccccaggguuggucaauuucgugccagccaccgcggucacacgauuaacccaagucaauagaagccggcguaaagaguguuuuagaucacccccuccccaauaaagcuaaaacucaccugaguuguaaaaaacuccaguugacacaaaauagacuacgaaaguggcuuuaacauaucugaacacacaauagcuaagacccaaacuggganuagauaccccacuaugcuuagcccuaaaccucaacaguuaaaucaacaaaacugcucgccagaacacuacgagccacagcuuaaaacucaaaggaccuggcggugcuucauaucccucuagaggagccuguucuguaaucgauaaaccccgaucaaccucaccaccucuugcucagccuauauaccgccaucuucagcaaacccugaugaaggcuacaaaguaagcgcaaguacccacguaaagacguuaggucaagguguagcccaugagguggcaagaaaugggcuacauuuucuaccccagaaaacuacgauagcccuuaugaaacuuaagggucgaagguggauuuagcaguaaacugagaguagagugcuuaguugaacagggcccugaagcgcguacacaccgncngucacccuccucaaguauacuucaaaggacauuuaacuaaaaccccuacgcauuuauauagaggagacaagucguaacaugguaaguguacuggnnagugcacuuggacgaacc	...((((..<<<<<<.)))).<<<<<<.<<..<<<<<<<<..<.<<<.<<<..<......>......<<.......<<<<.<..<<<.....>>>.>..>>>>..<<<<....<<...<<<....>>>..>>......>>>>.<<...>>.>>.<<<....>>>.....>>>>>>>........<<<....<<<<....>>>>..>>>..>>.>>>>>>.....<<<<<<<<.....(((.....((.>>>)).......)))..>>>>>..>>.>>>>>>....<<<((.....<<<<..<<<<...............<<<<<<......<<<.<<<.<<<......>>>..>>>.>>>.............<<....>>.>>>>>>.....>>>>...>>>>....<<<<<<...<<...<<<<.<.....>.>>>>...>>>>>>>>..........<.<<<<<......))..>>>>>.>.>>>.<<.......<<<<....>>>>.....>>..>>>>>><<<<<.<<<<<<<...<<<.<<<<<..<<<<<<<<<<.....<<........>>..........<<<<<<<.......<<.<<<..<<<<<<.......<<..<<<<<.....>>>.......>>..>>.....<<<....>>>.........>>>...>>>>>>>>....>>>>>>>..>>.>>>>>>>>.....<<<<.....>>>>.....<....<<<<<<<.......>>>>>>>....>.....>>>>>.....<<<<<<<.........>>>>>>>.....>>>...>>>>>>>>>>.>>....<..<<.<...<<<<<<..<<<<<......<<<...<<<.....>>>..>>>.......>>>>>.>>>>>>....>.>>...>.....<<<<<<<<<....>>>>>>>>>.........	.[.[[[[..(((((..]]]]]((((((.((..((((((((..(.(((.(((..(......)......(((......((((.(..(((.....))).)..))))..((((....((..((((....))).)))......)))).((...))))).(((....))).....)))))))......(.(((...(((((....)))).))))).)).)))))).....((((([[[.....(((.....((.]]])).......)))..)))))..)).))))))....((([[...(.((((...(((...............(((((((.....(((.(((.((........))..))).))).....).....(.((....))))))))).....)))....))))....((((((...((...((((.........))))...))))))))......{...(.(((((......]]..))))).))))).((.......((((....)))).....))...)))))(((((.(((((((...(((.(((((..((((((((((.....((........))..........(((((((.......((.(((...((((((.(....((..(((((.....))).......))..)).....(((....))).....).).)))...)).)))))....)))))))..)).)))))))).(...((((.....)))).....(....(((((((.......)))))))....)..)..))))).....(((((((.........))))))).....)))...)))))))))).))..(.(..((.(...((((((..(((((..((..(((....((.....))...)))..).)..))))).))))))....).))...)..)..(((((((((....)))))))))}........	Structure of human mitochondrial 28S ribosome in complex with mitochondrial IF3; 12S mitochondrial rRNA
6rw5	A	955	3.14	RF00177	URS0001A24B4C_9606	32522994		0003735		0005840	9606	aauagguuugguccuagccuuucuauuagcucuuaguaagauuacacaugcaagcauccccguuccagugaguucacccucuaaaucaccacgaucaaaagggacaagcaucaagcacgcagcaaugcagcucaaaacgcuuagccuagccacacccccacgggaaacagcagugauuaaccuuuagcaauaaacgaaaguuuaacuaagcuauacuaaccccaggguuggucaauuucgugccagccaccgcggucacacgauuaacccaagucaauagaagccggcguaaagaguguuuuagaucacccccuccccaauaaagcuaaaacucaccugaguuguaaaaaacuccaguugacacaaaauagacuacgaaaguggcuuuaacauaucugaacacacaauagcuaagacccaaacuggganuagauaccccacuaugcuuagcccuaaaccucaacaguuaaaucaacaaaacugcucgccagaacacuacgagccacagcuuaaaacucaaaggaccuggcggugcuucauaucccucuagaggagccuguucuguaaucgauaaaccccgaucaaccucaccaccucuugcucagccuauauaccgccaucuucagcaaacccugaugaaggcuacaaaguaagcgcaaguacccacguaaagacguuaggucaagguguagcccaugagguggcaagaaaugggcuacauuuucuaccccagaaaacuacgauagcccuuaugaaacuuaagggucgaagguggauuuagcaguaaacugagaguagagugcuuaguugaacagggcccugaagcgcguacacaccgncngucacccuccucaaguauacuucaaaggacauuuaacuaaaaccccuacgcauuuauauagaggagacaagucguaacaugguaaguguacuggnnagugcacuuggacgaacc	...((((..<<<<<<.)))).<<<<<<.<...<<<<<<<<..<.<<<.<<<..<......>......<<.......<<<<.<..<<.......>>.>..>>>>..<<<<....<<...<<<....>>>..>>......>>>>.<<...>>.>>.<<......>>.....>>>>>>>........<<<....<<<<....>>>>..>>>..>>.>>>>>>.....<<<<<<<<.....(((.....((.>>>)).......)))..>>>>>...>.>>>>>>....<<<((.....<<<<..<<<<...............<<<<<<......<<<.<<<.<<<......>>>..>>>.>>>.............<<....>>.>>>>>>.....>>>>...>>>>....<<<<<<...<<...<<<<.<.....>.>>>>...>>>>>>>>..........<.<<<<<......))..>>>>>.>.>>>.<<.......<<<<....>>>>.....>>..>>>>>><<<<<.<<<<<<<...<<<.<<<<<..<<<<<<<<<<.....<<........>>..........<<<<<<<.......<<.<<<..<<<<<<.......<<..<<<<<.....>>>.......>>..>>.....<<<....>>>.........>>>...>>>>>>>>....>>>>>>>..>>.>>>>>>>>.....<<<<.....>>>>.....<....<<<<<<<.......>>>>>>>....>.....>>>>>.....<<<<<<<.........>>>>>>>.....>>>...>>>>>>>>>>.>>....<..<<.<...<<<<<<..<<<<<......<<<...<<<.....>>>..>>>.......>>>>>.>>>>>>....>.>>...>.....<<<<<<<<<....>>>>>>>>>.........	.[.[[[[..(((((..]]]]]((((((.((..((((((((..(.(((.(((..(......)......(((......((((.(..(((.....))).)..))))..((((....((..((((....))).)))......)))).((...))))).(((....))).....)))))))......(.(((...(((((....)))).))))).)).)))))).....((((([[[.....(((.....((.]]])).......)))..)))))..)).))))))....((([[...(.((((...(((...............(((((((.....(((.(((.((........))..))).))).....).....(.((....))))))))).....)))....))))....((((((...((...((((.........))))...))))))))......{...(.(((((......]]..))))).))))).((.......((((....)))).....))...)))))(((((.(((((((...(((.(((((..((((((((((.....((........))..........(((((((.......((.(((...((((((.(....((..(((((.....))).......))..)).....(((....))).....).).)))...)).)))))....)))))))..)).)))))))).(...((((.....)))).....(....(((((((.......)))))))....)..)..))))).....(((((((.........))))))).....)))...)))))))))).))..(.(..((.(...((((((..(((((..((..(((....((.....))...)))..).)..))))).))))))....).))...)..)..(((((((((....)))))))))}........	Structure of human mitochondrial 28S ribosome in complex with mitochondrial IF2 and IF3; 12S mitochondrial rRNA
6tff	A	52	2.52	RF03013	URS00021ED92A_204669	32295864					204669	ggcuucaacaaccccguagguugggccgaaaggcagcgaaucuacuggagcc	<<<<<<.........<<<<<<<..<<<....>>>....>>>>>>>.>>>>>>	(((((((.....[[.((((((((.(((....))).])]))))))))))))))	Crystal structure of the ADP-binding domain of the NAD+ riboswitch with Nicotinamide adenine dinucleotide (NAD+); Chains: A
6tfh	A	52	2.95	RF03013	URS00021ED92A_204669	32295864					204669	ggnuucaacaaccccguagguugggccgaaaggcagcgaaucuacuggagcc	<<<<<<.........<<<<<<<..<<<....>>>....>>>>>>>.>>>>>>	(((((((.....[[.((((((((.(((....))).])]))))))))))))))	Crystal structure of the ADP-binding domain of the NAD+ riboswitch with Nicotinamide adenine dinucleotide, reduced (NADH); soaking with Manganese(II) (Mn2+); Chains: A
6ywe	A	2837	2.99	RF02541,RF02540	URS00021ED918_5141	33056988		0003735		0005840	5141	guaauggauauaaagcuuauguuuauauauauauauaaguauauaaagagacuacuaccaauagcuacacuauguauuaaggagaguauaacuuaauuuauguuuaugauagagguuaucaacauaugaacucuuagagaaauuacuuaauaaacgaagugaauugaaauaucuuauuaacuucaggaaaagaaaucaaacgagauucuaugauuagugugaacgaaaauagagcagccuauuaaaauaaguaaaauggcuuuaaagcuguuugaauauuguggggaaccuuccucaaaggcuaaauauaauacaugaguuacagagaaaaguaccgugagggaaagcuuugaaauaguaguuuuauaagcagcucaagcaauaagaaagcgagagcguaccuuuugcauaaugggucaccaaguuaauuuuagaugcgagcgaauuagaugugcauaguuaaaccgaucauuaaaauaaugaauagugucuaaaguuagacccgaagccuggugaucuuacuauagucaggacuauaaagguccgaacggguuaucguugcaaagauauccgaagaacuaugguaagcgagugaaagacaacacugacuaggauagcugguuuucugcgaaaccuauaauaguaggcaauuuaaguaacaucuuaguagguacagaacuuaaucucagacaagauguagauuuucauaccuagguaugaaaugcauuuuuuuuuguauacaucgggggaucgugaagauuuuaucggugaguauguagacucggaaugacaaagaugaaucuugaauaaucagacauagaaugauaagguuguaugucaaaagggaaacagcccagaacaagaguuaagguuccaaaauuauuauuaagugaaauaaagaaaguuuuuauauaagucgacaagaagaugggcuuggaagcagccauaauuuaaagaucucguaacagagcacuuguuaaaucuuaaaagcaucgaaaauuuaacggaucuaaauaauauaccgaaaccuuguccauauguaacauuaguaauaauauuaauguuauuugaugggguagcagaacguugagugaaucuuagauuuuuuuuuuauaacuaaauauagaugauaacucaagugagaauggugacaugaguaacaaaaaagaguuuaagguaccuaaaagguaucuuagagucucgccuaaagcuuauggcuacgucaaguaacggccucuaaguuuauaaucugaagauuaugacgaugagaaaacuuugguaccaacauuuaaaagugaaaauugugcaggaaggauaaaccguaccuagaaucugaaacaaguaagcuaguagagaauacgaaggcgugaaugagauaacaaucauaaaggaacucggcaaacuaacuaccguaacuuagggauaaggagagcucauuagucucgaacgaguaaaaaggaagaagcauggaauauuguuguacgacuguuuaauuaaaacaaagcacuuugcaaaaagacgauaagucuaaguauugagugugauuucugcccgaugccggcugguuaacgaauuuucuaaauugaaaaaaaauuugguuucagaggaacccccgguuaauggcggccuuagcgugaggguccuaagguagcgaaaugccuuggccguuaaaugcggucuugcaugaaugauguaacgauacaacagcugucucuaugauugacucagugaaauuggaauaacugugcagauacaguuuaccucuaguuagacgagaagacccuaugcagcuuuacuguuacuaauuauugaauacgauucugaaaauuuccaguguaaaagguaaucgauaagauauaauugaaacaccuuuauuuuucuaucguauuauuaaaccuuaaauuaaggaacaauuguuagaagacaguuuaugcggggcacaggccccauaaagaguaaaugggugugucuaaaauguuugcaauuuuuuauaguauauaucaaaucaucuuuaugcuauucauagaccuuggguacaguauaaaaauuauauauguauuaauuuacauauauuuuuucuaagaaauuagguaagauuuuguuuauagagaaauuagauguaaaaaaaaaaucuuaugagggcggauccgcuucuaauauuuuuuuguaguuauuauuauaauaauaaucauguuuauuacuuaaaaagcuuaauggcuuaaucuugccuuacuguuugauuaacaacaaaucuuacagucgcguaagcggggcauaggaucacaagauacaaaaaggaaagaucuuggauuuuuggaaaagcuacgcuagggauaacaggcuaauuugcgcaagaguguacaaaaugagugcgcgguuuggcaccucggcuugacuaauccucauggaugcagaaacuauguaggguacgacuguucgucgauuaaaaaguuacaugagcuggguuaaauacgucgugagacaguaugguuucuaucuucuagagggaauuagaauauaauaaggauuaaccuuuguacgaaaggaacaugggguacuauuguuaacaguuuuauuaaccucugguuuaccuguuguuuaugugccuuagggauguuaccgucacuugaguaaauacaauagcauaagcauggcaggaaagcuaaguuagucaaaaauaagugcugaaagcauauaggcacgaaauuuaccuuaagauauuucuuaaauauacguaagaaaauauuacguuaauaggcuuaguuuguaauaaucuagagauuuuaaggaacuaaguacuaauuuuauaaaaaacugaaugauuaauauaucuuaca	<<<<..<<<<<<.......<<<<<<<<<..>>>>...<<<.......<<<<<<<<<<......<<.....<<<<<<<<..<<<<<<.....>>.....<<<<<<................>>>>>>....>>>>..<<....>>..........<<<<<<.....<......>......>>>>>.>.........<<....>>..<<<<<<.....<<....>>....>>>>>>..<<...............<<<<<<<<....>>>>>>>>........<<<<<..[[[[>>>>>...>>.......>>>>>>>>.................<<....>>....>>.......>>>>>>>>>>.......<<<<..<<.........>>..>>>>...<.<........>.>.<<<<<<....<<<<<<<<<<<<<..<<<.........>>>...<......>..<<<<.......>>>>...>>>>>>>>>>>>>..<<.<..<<<<<<<.....<<<<<<<<<..<<<<<....>>.>>>...<<<..<<<<........>>>>.>>>....>>>>>>>>>.....<<.....>>.......>>>>>>.>..>.>>..<<<<<<....<<<<<....>>>>>..<<<<<<<...<<<<<<.<<.....<<<...<..<<<<<<.<<<<<<<<..<..<<<<<<<<<..>>>>>>>>>>.>>>>.....>>>>.....<<<<<<<<<<.....>>>>>>.>>>>>>>>.>>..>..>>.>.....>>.>>>>>>...>>>>>>>.....<<<<<<.<<<......>>>.>>>>>>....<<<......>>>...<<<<<.<<...<<<(((.....<<<<<<.....<<......<<..<<<<<<<........<<<<<<.<....<<<<.......>>>>....>........<<<......>>>..>>>>>>......>>>>>>>.>>...........)))>>...>>>>>>.>>>...>>>>>>><<<<..<<<<<<<<<<<<....>>>>>>>>>>>>...>>>>....>>>>>>..<<<<<<..<<<....<<..<<..<<...>>..>>..>>....>>>.>>>>>>........>>>>>><......<<.....<<<.<<<<<<<<<<<.....>>>>>>>>>>>.>>><<<<<...<<<<<.<<........((...<<<.<<<...<<<.<<<<<<<..>>>>>>>>>>...>>>....)).........<<<.<<..(((((..>>.>>>..............>>>..>>......<<......>>>>>>>..<<<.....>>>..>>>>>....<<<<....<<<<<<<<.<<.........<......<<.<<....<<..>>.....>>>>..<<<.<<...<<<<..>>>>....>>.>.>>.............<<<<<<<<<..<<<.........>>>..<<<<<<.......<<<<.....>>>>.......>>>>>>....<<.<<<..<<<<<<<..<<....<.......<<<<<<<.......>>>>>>>.......>....>>>>>>>..>>>>>.<<<<........>>>>.........<...........<<<<<<.....>>>>>>.....>....>>.....>>.>>>>>>>..>..>>.>>>>>>>>.>>>>>>.....>.....<<<<<........>>>>>..<<<<<<<..<<<.<<......<<<<.<<<<<<..<<<<<..<<<<<.<<..<<<<<<<<...<<<<<...........<<<<<<.<<<.....>>>...........>>>>>>..>>>>>.>>>>>>>>......<<<<.....>>>>....>>.>>>>>...>>>>>...<<.......>>.<<<<<<...........>>>>.>>..<<.....<.......<<<..<<<<...>>>>..>>>.>..........<<<<<<.......>>>>>>.............<<<<<<<<<......>>>>>>>>>................<<<<<<<.....<<<<.........>>>>.<<<<..<<<<.<<.<<<.<<.<<<<<..>>>>>>>>>>.>>..>>>>...<<<<<<<<<..>>>>>>>>>........>>>>......<<<.[.(((>>>...>>>>>>>...<<<<..<<<.........>>>..>>>>.<<<....>>>.>>)))]......<<<<<<.<...]]]]...>>>>>>>............>>>>..>>>>>>.......<<<<.<...<<<<<...<<.......>>...>>>>>....>>>>.>..<<<<.<<<<<...<<<<<<<<.........>>>>>..>>>..<<<<.....>>>>.......>>>>..>...>>>.>.....<<<<<<<....>>>.>>>>....>>..>>>.>>>>>>>.....<<<<<<...<<<<<...<<<<<...............>.>>......<<<<<..>>>>>>>.<<<<<<...<<<<...<<<<<<<<<<<<<<.<<<..>>>...<<<<...)))))..>>>>........>>>>>>>>>..>>>>>...>>>>.>>>>>>..<<<.<..<<<<<...........>>>>>...>>>>.>>>>>...>>>.>>>....<<<.<<<<<.......>>>>>....<<<<<<<<<<<<.....<<<<<..>>>>>....>>>.>>>>>>.>>>.....>>>....>>>>>>>>.....>>>>>>>>>>.	((((..((((((.......(((((((((..))))...(((..(....((((((((((...[.(((....((((((((((.(((((..{..[.)...[.((((((...........}.]].))))))....))))..((....))..........((((((.....(......)......))))).).........((....))...(((((.....((....))....)))))...(((..............(((((((......)))))))........(((((..{{{{)))))..)))......))))))))).)...............((....))....)).).....)))))))))).....(.((((..((.........))..)))).{.(.(........).).((((((....(((((((((((((..((...........))...(......)..((((.......))))...)))))))))))))..((.(...((((((.....((((((((((.((((......){)))...(((..((((.......A)))).)))..).))))))))).(...((.....))....)..))))))....).))..((((((....(((((....)))))...(((((([.(((((((.((.....(((...(..((((((.(((((.((.....((((((........))))))..)).).....))))......((..(((.(.....).)))...)).)))).))..)..)).).....)).)))))).])))))))......((((((.(((......))).))))))....(((......)))...(((((.((...((([[[...(.((((((.....((......((..(((((((.......<((((((......(((.........)))..........(..(((......)))).))))))......))))))).))...........]]]))...))))))))))...)))))))(((((.((((((((((((....)))))))))))).).))))....))))))(.((((((..(((.....(.]((..((...))..))..).....))).))))))..).....))))))(......((.....(((.(((((((((((.....))))))))))).)))((((....((((..((.(......[[...(((.(((.(.(((.((((((....)))))))))..))))....]](........(((.((..[[[[[..)).))).(..).......).))).)))......((......)).))))..((.......))...))))....((((....((((((((.((..(....(........((.((....(.[..).....))))..(((.((..(((((..)))).<).)).).)).(...).......(((((((((.}.((.........))...((((((........(((.....)))........)))))).]..((.(((..(((((((..((....(.......(((((((.......))))))).......)....)))))))..)))))(((((........)))))........((..........((((((.....))))))..)..)....)).....)).))))))).)..))).)))))))).)))))).....)).[..(((((.....}].)))))..(((((((..(((.((.....(((((.((((((..(((((..(((((.((..((((((((...(((((.(......[..(((((..(((.....)))..........].)))))).))))).))))))))......((((.....))))....)).)))))...)))))...((.......)).((((((...........)))).))..((.....(.......(((..((((...))))..))).)......(...((((((.......))))))...........).(((((((((......)))))))))................(((((((..((.((((.........)))).((((..((..(.(.(((.((.((.((..)).))))))).)...).))...(((((((((())))))))))........))))....)).((...[[[))....)))))))...((((..(((......<..)))..)))).(((....))).))]]].......((((((.(...}}}}...))))))).......>....))))..)))))))......((((.(...(((((...((.......))...)))))....)))).)..((((.(((((...((((((((.........)))))..)))..((((.....)))).......))))..)...))).).....(((((((....))).))))..a.))..))).)))))))....)((((((...(((((...((((......(....)......))......(((((..))))))).((((((...((((...((((((((((((((.(((()))).(.((((...]]]]]..)))).....)>.)))))))))..)))))...)))).))))))..(((....(((((....>......)))))....))).)))))...))).)))....(((.(((((.......)))))....((((((((((((.....((((....))))....))).)))))).))).....)))....)))))))).....)))))))))).	The structure of the mitoribosome from Neurospora crassa in the P/E tRNA bound state; 23S rRNA
6yws	A	2820	2.74	RF02541,RF02540	URS00021ED918_367110	33056988		0003735		0005840	367110	guaauggauauaaagcuuauguuuauauauauauauaaguauauaaagagacuacuaccaauagcuacacuauguauuaaggagaguauaacuuaauuuauguuuaugauagagguuaucaacauaugaacucuuagagaaauuacuuaauaaacgaagugaauugaaauaucuuauuaacuucaggaaaagaaaucaaacgagauucuaugauuagugugaacgaaaauagagcagccuauuaaaauaaguaaaauggcuuuaaagcuguuugaauauuguggggaaccuuccucaaaggcuaaauauaauacaugaguuacagagaaaaguaccgugagggaaagcuuugaaauaguaguuuuauaagcagcucaagcaauaagaaagcgagagcguaccuuuugcauaaugggucaccaaguuaauuuuagaugcgagcgaauuagaugugcauaguuaaaccgaucauuaaaauaaugaauagugucuaaaguuagacccgaagccuggugaucuuacuauagucaggacuauaaagguccgaacggguuaucguugcaaagauauccgaagaacuaugguaagcgagugaaagacaacacugacuaggauagcugguuuucugcgaaaccuauaauaguaggcaauuuaaguaacaucuuaguagguacagaacuuaaucucagacaagauguagauuuucauaccuagguaugaaaugcauuuuuuuuuguauacaucgggggauauuuuaucggugaguauguagacucggaaugacaaagaugaaucuugaauaaucagacauagaaugauaagguuguaugucaaaagggaaacagcccagaacaagaguuaagguuccaaaauuauuauuaagugaaauaaagaaaguuuuuauauaagucgacaagaagaugggcuuggaagcagccauaauuuaaagaucucguaacagagcacuuguuaaaucuuaaaagcaucgaaaauuuaacggaucuaaauaauauaccgaaaccuuguccauauguaacauuaguaauaauauuaauguuauuugaugggguagcagaacguugagugaaucuuagauuuuuuuuuuauaacuaaauauagaugauaacucaagugagaauggugacaugaguaacaaaaaagaguuuaagguaccuaaaagguaucuuagagucucgccuaaagcuuauggcuacgucaaguaacggccucuaaguuuauaaucugaagauuaugacgaugagaaaacuuugguaccaacauuuaaaagugaaaauugugcaggaaggauaaaccguaccuagaaucugaaacaaguaagcuaguagagaauacgaaggcgugaaugagauaacaaucauaaaggaacucggcaaacuaacuaccguaacuuagggauaaggagagcucauuagucucgaacgaguaaaaaggaagaagcauggaauauuguuguacgacuguuuaauuaaaacaaagcacuuugcaaaaagacgauaagucuaaguauugagugugauuucugcccgaugccggcugguuaacgaauuuucuaaauugaaaaaaaauuugguuucagaggaacccccgguuaauggcggccgguccuaagguagcgaaaugccuuggccguuaaaugcggucuugcaugaaugauguaacgauacaacagcugucucuaugauugacucagugaaauuggaauaacugugcagauacaguuuaccucuaguuagacgagaagacccuaugcagcuuuacuguuacuaauuauugaauacgauucugaaaauuuccaguguaaaagguaaucgauaagauauaauugaaacaccuuuauuuuucuaucguauuauuaaaccuuaaauuaaggaacaauuguuagaagacaguuuaugcggggcacaggccccauaaagaguaaaugggugugucuaaaauguuugcaauuuuuuauaguauauaucaaaucaucuuuaugcuauucauagaccuuggguacaguauaaaaauuauauauguauuaauuuacauauauuuuuucuaagaaauuagguaagauuuuguuuauagagaaauuagauguaaaaaaaaaaucuuaugagggcggauccgcuucuaauauuuuuuuguaguuauuauuauaauaauaaucauguuuauuacuuaaaaagcuuaauggcuuaaucuugccuuacuguuugauuaacaacaaaucuuacagucgcguaagcggggcauaggaucacaagauacaaaaaggaaagaucuuggauuuuuggaaaagcuacgcuagggauaacaggcuaauuugcgcaagaguguacaaaaugagugcgcgguuuggcaccucggcuugacuaauccucauggaugcagaaacuauguaggguacgacuguucgucgauuaaaaaguuacaugagcuggguuaaauacgucgugagacaguaugguuucuaucuucuagagggaauuagaauauaauaaggauuaaccuuuguacgaaaggaacaugggguacuauuguuaacaguuuuauuaaccucugguuuaccuguuguuuaugugccuuagggauguuaccgucacuugaguaaauacaauagcauaagcauggcaggaaagcuaaguuagucaaaaauaagugcugaaagcauauaggcacgaaauuuaccuuaagauauuucuuaaauauacguaagaaaauauuacguuaauaggcuuaguuuguaauaaucuagagauuuuaaggaacuaaguacuaauuuuauaaaaaacugaaugauuaauauaucuuaca	<<<<..<<<<<<.......<<<<<<<<<..>>>>...<<<.......<<<<<<<<<<......((.....<<<<<<<<<.<<<<<<.....>>.....<<<<<<................>>>>>>....>>>>..<<....>>..........<<<<<<.....<<....>>......>>>>>.>.........<<....>>..<<<<<<.....<<....>>....>>>>>>..((...............<<<<<<<<....>>>>>>>>........<<<<<..<<<<>>>>>...))......>>>>>>>>>.................<<....>>....)).......>>>>>>>>>>.......<<<<..<<.........>>..>>>>...<............>.<<<<<<....<<<<<<<<<<<<<..<<<.........>>>...<......>..<<<<<.....>>>>>...>>>>>>>>>>>>>..<<.<..<<<<<<<....<<<<<<<<<<..<<<<<....>>.>>>...<<<..<<<<........>>>>.>>>....>>>>>>>>>>....<<.....>>.......>>>>>>.>..>.>>..<<<<<<....<<<<<....>>>>>..<<<<<<<...<<<<<<.<<.....<<<...<..<<<<<<.<<<<<<<<..<..<<<<<<<<<..>>>>>>>>>>.>>>>.....>>>>.....<<<<.<<<..>>>..>>>>>>>>.>>..>..>>.>.....>>.>>>>>>...>>>>>>>.....<<<<<<.<<<......>>>.>>>>>>....<<<......>>>...<<<<<.<<...<<<(((.....<<<<<<.....<<......<<..<<<<<<<........<<<<<<.<....<<<<.......>>>>....>........<<<......>>>..>>>>>>......>>>>>>>.>>...........)))>>...>>>>>>.>>>...>>>>>>><<<<..<<<<<<<<<<<<....>>>>>>>>>>>>...>>>>....>>>>>>..<<<<<<..<<<....<<..<<..<<...>>..>>..>>....>>>.>>>>>>........>>>>>><......<<.....<<<.<<<<<<<<<<<.....>>>>>>>>>>>.>>><<<<<...<<<<<.<<........((...<<<.<<<...<<<.<<<<<<<..>>>>>>>>>>...>>>....)).........<<<.<<..(((((..>>.>>>..............>>>..>>......<<......>>>>>>>..<<<.....>>>..>>>>>....<<<<....<<<<<<<<.<<................<<.<<....<<..>>.....>>>>..<<<.<<..<<<<<..>>>>..>.>>.>.>>.............<<<<<<<<<..<<<.........>>>..<<<<<<.......<<<<.....>>>>.......>>>>>>....<<.<<<..<<<<<<<..<<....<.......<<<<<<<.......>>>>>>>.......>....>>>>>>>..>>>>><<<..>>>........<...........<<<<<<.....>>>>>>.....>....>>.....>>.>>>>>>>.....>>.>>>>>>>>.>>>>>>.....>.....<<<<<........>>>>>..<<<<<<<..<<<.[[......<<<<.[[<<<<..<<<<<..<<<<<.<<..<<<<<<<<...<<<<<...........<<<<<<.<<<.....>>>...........>>>>>>..>>>>>.>>>>>>>>......<<<<.....>>>>....>>.>>>>>...>>>>>...<<.......>>.<<<<<<...........>>>>.>>..<<.....<.......<<<..<<<<...>>>>..>>>.>..........<<<<<<.......>>>>>>.............<<<<<<<<<......>>>>>>>>>................<<<<<<<.....<<<<.........>>>>.<<<<..<<<<<<<.<<<.<<.<<<<<..>>>>>>>>>>.>>>.>>>>...<<<<<<<<<..>>>>>>>>>........>>>>......<<<...(((>>>...>>>>>>>...<<<<..<<<.........>>>..>>>>.<<<....>>>.>>))).......<<<<<<.(...>>>>...)>>>>>>............>>>>..]]>>>>.......<<<<.<...<<<<<...<.........>...>>>>>....>>>>.>..<<<<.<<<<<...<<<<<<<<.........>>>>>..>>>..<<<<.....>>>>.......>>>>..>...>>>.>.....<<<<<<<....>>>.>>>>....]]..>>>.>>>>>>>.....<<<<<<...<<<<<...<<<<<...............>.>>......<<<<<..>>>>>>>.<<<<<<...<<<<...<<<<<<<<<<<<<<.<<<..>>>...<<<<...)))))..>>>>........>>>>>>>>>..>>>>>...>>>>.>>>>>>..<<<.<..<<<<<...........>>>>>...>>>>.>>>>>...>>>.>>>....<<<.<<<<<.......>>>>>....<<<<<<<<<<<<.....<<<<....>>>>....>>>.>>>>>>.>>>.....>>>....>>>>>>>>.....>>>>>>>>>>.	((((..((((((.......(((((((((..))))...(((..(....((((((((((...[.(((....((((((((((.(((((..{..[.)...[.((((((...........}.]].))))))....))))..((....))..........((((((.....(......)......))))).).........((....))...(((((.....((....))....)))))...(((..............(((((((......)))))))........(((((..{{{{)))))..)))......))))))))).)...............((....))....)).).....)))))))))).....(.((((..((.........))..)))).{.(.(........).).((((((....(((((((((((((..((...........))...(......)..((((.......))))...)))))))))))))..((.(...((((((.....((((((((((.((((......){)))...(((..((((.......A)))).)))..).))))))))).(...((.....))....)..))))))....).))..((((((....(((((....)))))...(((((([.(((((((.((.....(((...(..((((((.(((((((...(..((((..(((())))..)))))..))).....))))......((..(((..)))...)).)))).))..)..)).).....)).)))))).])))))))......((((((.(((......))).))))))....(((......)))...(((((.((...((([[[...(.((((((.....((......((..(((((((.......<((((((......(((.........)))..........(..(((......)))).))))))......))))))).))...........]]]))...))))))))))...)))))))(((((.((((((((((((....)))))))))))).).))))....))))))(.((((((..(((.....(.]((..((...))..))..).....))).))))))..).....))))))(......((.....(((.(((((((((((.....))))))))))).)))((((....((((..((.(......[[...(((.(((.(.(((.((((((....)))))))))..))))....]](........(((.((..[[[[[..)).))).(..).......).))).)))......((......)).))))..((.......))...))))....((((....((((((((.((..(....(........((.((....(.[..).....))))..(((.((..(((((..)))).<).)).).)).(...).......(((((((((.}.((.........))...((((((........(((.....)))........)))))).]..((.(((..(((((((..((....(.......(((((((.......))))))).......)....)))))))..)))))(((())))........((..........((((((.....))))))..)..)....)).....)).))))))).)..))).)))))))).)))))).....)).[..(((((.....}].)))))..(((((((..(((.((.....(((((.((((((..(((((..(((((.((..((((((((...(((.(.(......[..(((((..(((.....)))..........].)))))).).))).))))))))......((((.....))))....)).)))))...)))))...((.......)).((((((...........)))).))(.((.....(.......(((..((((...))))..))).)......(...((((((.......))))))...........).(((((((((......)))))))))................(((((((..((.((((.........)))).((((..((.((((.(((.((.(((((..)))))))))).))).).))...(((((((((()))))))))).(...)..))))....)).((...[[[))....)))))))...((((..(((......<..)))..)))).(((....))).))]]].......((((((.(...}}}}...)))))))......)>....))))..)))))))......((((.(...(((((...((.......))...)))))....)))).)..((((.(((((...((((((((.........)))))..)))..((((.....)))).......))))..)...))).).....(((((((....))).))))..a.))..))).)))))))....)((((((...(((((...((((......(....)......))......(((((..))))))).((((((...((((...((((((((((((((.(((()))).(.((((...]]]]]..)))).....)>.)))))))))..)))))...)))).))))))..(((....(((((....>......)))))....))).)))))...))).)))....(((.(((((.......)))))....((((((((((((.....((((....))))....))).)))))).))).....)))....)))))))).....)))))))))).	The structure of the large subunit of the mitoribosome from Neurospora crassa; RNA (2820-MER)
6ywv	A	2529	3.03	RF02541,RF02540	URS00021ED918_367110	33056988		0003735		0005840	367110	guaauggauauaaagcuuauguuuauauauauauauaaguauauaaagagacuacuaccaauagcuacacuauguauuaaggagaguauaacuuaauuuauguuuaugauagagguuaucaacauaugaacucuuagagaaauuacuuaauaaacgaagugaauugaaauaucuuauuaacuucaggaaaagaaaucaaacgagauucuaugauuagugugaacgaaaauagagcagccuauuaaaauaaguaaaauggcuuuaaagcuguuugaauauuguggggaaccuuccucaaaggcuaaauauaauacaugaguuacagagaaaaguaccgugagggaaagcuuugaaauaguaguuuuauaagcagcucaagcaauaagaaagcgagagcguaccuuuugcauaaugggucaccaaguuaauuuuagaugcgagcgaauuagaugugcauaguuaaaccgaucauuaaaauaaugaauagugucuaaaguuagacccgaagccuggugaucuuacuauagucaggacuauaaagguccgaacggguuaucguugcaaagauauccgaagaacuaugguaagcgagugaaagacaacacugacuaggauagcugguuuucugcgaaaccuauaauaguaggcaauuuaaguaacaucuuaguagguacagaacuuaaucucagacaagauguagauuuucauaccuagguaugaaaugcauuuuuuuuuguauacaucgggguuaucggugaguauguagacucggaaugacaaagaugaaucuugaauaaucagacauagaaugauaagguuguaugucaaaagggaaacagcccagaacaagaguuaagguuccaaaauuauuauuaagugaaauaaagaaaguuuuuauauaagucgacaagaagaugggcuuggaagcagccauaauuuaaagaucucguaacagagcacuuguuaaaucuuaaaagcaucgaaaauuuaacggaucuaaauaauauaccgaaaccuuguccauauguaacauuaguaauaauauuaauguuauuugaugggguagcagaacguugagugaaucuuagauuuuuuuuuuauaacuaaauauagaugauaacucaagugagaauggugacaugaguaacaaaaaagaguuuaagguaccuaaaagguaucuuagagucucgccuaaagcuuauggcuacgucaaguaacggccucuaaguuuauaaucugaagauuaugacgaugagaaaacuuugguaccaacauuuaaaagugaaaauugugcaggaaggauaaaccguaccuagaaucugaaacaaguaagcuaguagagaauacgaaggcgugaaugagauaacaaucauaaaggaacucggcaaacuauaccguaacuuagggauaaggagagcauggaauauuguuguacgacuguuuaauuaaaacaaagcacuuugcaaaaagacgauaagucuaaguauugagugugauuucauguaacgauacaacagcugucucuaugauugacucagugaaauuggaauaacugugcagauacaguuuaccucuaguuagacgagaagacccuaugcagcuuuacuguuacuaauuauugaauacgaaucguauuauuaaaccuuaaauuaaggaacaauuguuagaagacaguuuaggccccauaaagaguaaaugggugugucuaaaauguuugcaauuuuuuauaguauauaucaaaucaucuuuaugcuauucauggguacaguauaaaaauuuaagaaauuagguaagauuuuguuuauagagaaauuagauguaaaaaaaaaaucuuaugagggcggauccgcuucuaauauuuuuuuguaguuauuauuauaauaauaaucauguuuauuacuuaaaaagcuuaauggcuuaaucuugccuuacuguuugauuaacaacaaaucuuacagucgcguaagcggggcauaggaucacaagauacaaaaaggaaagaucuuggauuuuuggaaaagcuacgcuagggauaacaggcuaauuugcgcaagaguguacaaaaugagugcgcgguuuggcaccucgaugucggcuugacuaauccucauggaugcagaaacuauguaggguacgacuguucgucgauuaaaaaguuacaugagcuggguuaaauacgucgugagacaguaugguuucuaucuucuagagggaauuagaauauaauaaggauuaaccuuuguacgaaaggaacaugggguacuauuguuauauaacaguuuuauuaaccucugguuuaccuguuguuuaugugccuuagggauguuaccgucacuugaguaaauacaauagcauaagcauggcaggaaagcuaaguuagucaaaaauaagugcugaaagcauauaggcacgaaauuuaccuuaagauauuucuuaaauauacguaagaaaauauuacguuaauaggcuuaguuuguaaggaacuaaguacuaauuuuauaaaaaacugaaugauuaauauaucuuaca	<<<<..<<<<<<.......<<<<<<<<<..>>>>...<<<.......<<<<<<<<<<......<<.....<<<<<<<<<.<<<<<<.....>>.....<<<<<<................>>>>>>....>>>>..<<....>>..........<<<<<<.....<......>......>>>>>.>.........<<....>>..<<<<<<.....<<....>>....>>>>>>..<<...............<<<<<<<<....>>>>>>>>........<<<<<..[[[[>>>>>...>>......>>>>>>>>>.................<<....>>....>>.......>>>>>>>>>>.......<<<<..<<.........>>..>>>>...<.<........>.>.<<<<<<....<<<<<<<<<<<<<..<<<.........>>>...<......>..<<<<<.....>>>>>...>>>>>>>>>>>>>..<<.<..<<<<<<<....<<<<<<<<<<..<<<<<....>>.>>>...<<<..<<<<........>>>>.>>>....>>>>>>>>>>....<<.....>>.......>>>>>>.>..>.>>..<<<<<<....<<<<<....>>>>>..<<<<<<<...<<<<<<.<<.....<<<......<<<<<<.<<<<<<<.<.<..<<<<<<<<<..>>>>>>>>>>>.>>>.....>>>>.....<<<<<..>.>>>>>>>>.>>.....>>.>.....>>.>>>>>>...>>>>>>>.....<<<<<<.<<<......>>>.>>>>>>....<<<......>>>...<<<<<.<<...<<<(((.....<<<<<<.....<<......<<..<<<<<<<........<<<<<<.<....<<<<.......>>>>....>........<<<......>>>..>>>>>>......>>>>>>>.>>...........)))>>...>>>>>>.>>>...>>>>>>><<<<..<<<<<<<<<<<<....>>>>>>>>>>>>...>>>>....>>>>>>..<<<<<<..<<<....<<..<<..<<...>>..>>..>>....>>>.>>>>>>........>>>>>><......<<.....<<<.<<<<<<<<<<<.....>>>>>>>>>>>.>>><<<<<...<<<<<.<<........((...<<<.<<<...<<<.<<<<<<<..>>>>>>>>>>...>>>....)).........<<<.<<..(((((..>>.>>>..............>>>..>>......<<......>>>>>>>..<<<.....>>>..>>>>>....<<<<....<<<<<<<<.<<.................<<....<<..>>.....>>..............<<<<<<<<<..<<<.........>>>..<<<<<<.......<<<<.....>>>>.......>>>>>>....<.>.....>>.>>>>>>>.....>>.>>>>>>>>.>>>>>>.....>.....<<<<<........>>>>>..<<<<<<<..<<<.<<...<<<<<<<.<<<<<<..<<<<<..<<<<<.<<..<<<<<<<.>>>>>>>......<<<<.....>>>>....>>.>>>>>...>>>>>....<<<<<<...........>>>>.>>..<<.....<.......<<<..<<<<...>>>>..>>>.>..........<<<<<..>>>>>.......................<<<<<<<.....<<<<.........>>>>.<<<<..<<<<<<<.<<<.<<.<<<<<..>>>>>>>>>>.>>>.>>>>...<<<<<<<<<..>>>>>>>>>........>>>>......<<<...(((>>>...>>>>>>>...<<<<..<<<.........>>>..>>>>.<<<....>>>.>>))).......<<<<<<.<...]]]]...>>>>>>>............>>>>..>>>>>>>......<<<<.....<<<<<...<.........>...>>>>>.....>>>.>.>>......<<<..<<<<...<<<<<<<<.........>>>>>..>>>..<<<<.....>>>>.......>>>>......>>>.......<<<<<<<....>>>.>>>>....>>..>>>.>>>>>>>.....<<<<<<...<<<<<...<<<<..................>>......<<<<<<<<>>>>>>>>>>.<<<<<<...<<<<...<<<<<<<<<<<<<<.<<<..>>>...<<<<...)))))..>>>>........>>>>>>>>>..>>>>>...>>>>.>>>>>>..<<<.<..<<<<<...........>>>>>...>>>>.>>>>>...>>>.>>>....<<<.<<<<<.......>>>>>....<<<<<<<<<<<<....>>.>>>>>>>.>>>.....>>>....>>>>>>>>.....>>>>>>>>>>.	((((..((((((.......(((((((((..))))...(((..(....((((((((((...[.(((....((((((((((.(((((..{..[.)...[.((((((...........}.]].))))))....))))..((....))..........((((((.....(......)......))))).).........((....))...(((((.....((....))....)))))...(((..............(((((((......)))))))........(((((..{{{{)))))..)))......))))))))).)...............((....))....)).).....)))))))))).....(.((((..((.........))..)))).{.(.(........).).((((((....(((((((((((((..((...........))...(......)..((((.......))))...)))))))))))))..((.(...((((((.....((((((((((.((((......){)))...(((..((((.......A)))).)))..).))))))))).(...((.....))....)..))))))....).))..((((((....(((((....)))))...(((((([.(((((((.((.....(((...(..((((((.(((((((...(...((((((......)))))).)..))).....))))......((..()...)).)))).))..)..)).).....)).)))))).])))))))......((((((.(((......))).))))))....(((......)))...(((((.((...((([[[...(.((((((.....((......((..(((((((.......<((((((......(((.........)))..........(..(((......)))).))))))......))))))).))...........]]]))...))))))))))...)))))))(((((.((((((((((((....)))))))))))).).))))....))))))(.((((((..(((.....(.]((..((...))..))..).....))).))))))..).....))))))(......((.....(((.(((((((((((.....))))))))))).)))((((....((((..((.(......[[...(((.(((.(.(((.((((((....)))))))))..))))....]](........(((.((..[[[[[..)).))).(..).......).))).)))......((......)).))))..((.......))...))))....((((....((((((((.((..(....(.........((....(.[..).....))..............(((((((((.}.((.........))...((((((........(((.....)))........)))))).](.(.).)...)).))))))).)..))).)))))))).)))))).....)).[..(((((.....}].)))))..(((((((..(((.((...(((((((.((((((..(((((..(((((.((..(((((((.)))))))......((((.....))))....)).)))))...)))))....((((((...........)))).))..((.....(.......(((..((((...))))..))).)......(...(((((())))))...........)...........(((((((..((.((((.........)))).((((..((..(((.(((.((.(((((..)))))))))).))..).))...(((((((((()))))))))).(...)..))))....)).((...[[[))....)))))))...((((..(((......<..)))..)))).(((....))).))]]].......((((((.(...}}}}...))))))).......>....))))..)))))))......((((.(...(((((...((.......))...)))))....)))).).)).....((((.(((((...((((((((.........)))))..)))..((((.....)))).......))))..)...))).).....(((((((....))).))))..a.))..))).)))))))....)((((((...(((((...((((......(....)......))......(((((((()))))))))).((((((...((((...((((((((((((((.(((()))).(.((((...]]]]]..)))).....)..)))))))))..)))))...)))).))))))..(((....(((((....>......)))))....))).)))))...))).)))....(((.(((((.......)))))....((((((((((((....))).)))))).))).....)))....)))))))).....)))))))))).	The structure of the Atp25 bound assembly intermediate of the mitoribosome from Neurospora crassa; 23 S rRNA
6ywx	A	2838	3.1	RF02541,RF02540	URS00021ED918_367110	33056988		0003735		0005840	367110	guaauggauauaaagcuuauguuuauauauauauauaaguauauaaagagacuacuaccaauagcuacacuauguauuaaggagaguauaacuuaauuuauguuuaugauagagguuaucaacauaugaacucuuagagaaauuacuuaauaaacgaagugaauugaaauaucuuauuaacuucaggaaaagaaaucaaacgagauucuaugauuagugugaacgaaaauagagcagccuauuaaaauaaguaaaauggcuuuaaagcuguuugaauauuguggggaaccuuccucaaaggcuaaauauaauacaugaguuacagagaaaaguaccgugagggaaagcuuugaaauaguaguuuuauaagcagcucaagcaauaagaaagcgagagcguaccuuuugcauaaugggucaccaaguuaauuuuagaugcgagcgaauuagaugugcauaguuaaaccgaucauuaaaauaaugaauagugucuaaaguuagacccgaagccuggugaucuuacuauagucaggacuauaaagguccgaacggguuaucguugcaaagauauccgaagaacuaugguaagcgagugaaagacaacacugacuaggauagcugguuuucugcgaaaccuauaauaguaggcaauuuaaguaacaucuuaguagguacagaacuuaaucucagacaagauguagauuuucauaccuagguaugaaaugcauuuuuuuuuguauacaucgggggaucgugaagauuuuaucggugaguauguagacucggaaugacaaagaugaaucuugaauaaucagacauagaaugauaagguuguaugucaaaagggaaacagcccagaacaagaguuaagguuccaaaauuauuauuaagugaaauaaagaaaguuuuuauauaagucgacaagaagaugggcuuggaagcagccauaauuuaaagaucucguaacagagcacuuguuaaaucuuaaaagcaucgaaaauuuaacggaucuaaauaauauaccgaaaccuuguccauauguaacauuaguaauaauauuaauguuauuugaugggguagcagaacguugagugaaucuuagauuuuuuuuuuauaacuaaauauagaugauaacucaagugagaauggugacaugaguaacaaaaaagaguuuaagguaccuaaaagguaucuuagagucucgccuaaagcuuauggcuacgucaaguaacggccucuaaguuuauaaucugaagauuaugacgaugagaaaacuuugguaccaacauuuaaaagugaaaauugugcaggaaggauaaaccguaccuagaaucugaaacaaguaagcuaguagagaauacgaaggcgugaaugagauaacaaucauaaaggaacucggcaaacuaacuaccguaacuuagggauaaggagagcucauuagucucgaacgaguaaaaaggaagaagcauggaauauuguuguacgacuguuuaauuaaaacaaagcacuuugcaaaaagacgauaagucuaaguauugagugugauuucugcccgaugccggcugguuaacgaauuuucuaaauugaaaaaaaauuugguuucagaggaacccccgguuaauggcggccuuagcgugaggguccuaagguagcgaaaugccuuggccguuaaaugcggucuugcaugaaugauguaacgauacaacagcugucucuaugauugacucagugaaauuggaauaacugugcagauacaguuuaccucuaguuagacgagaagacccuaugcagcuuuacuguuacuaauuauugaauacgauucugaaaauuuccaguguaaaagguaaucgauaagauauaauugaaacaccuuuauuuuucuaucguauuauuaaaccuuaaauuaaggaacaauuguuagaagacaguuuaugcggggcacaggccccauaaagaguaaaugggugugucuaaaauguuugcaauuuuuuauaguauauaucaaaucaucuuuaugcuauucauagaccuuggguacaguauaaaaauuauauauguauuaauuuacauauauuuuuucuaagaaauuagguaagauuuuguuuauagagaaauuagauguaaaaaaaaaaucuuaugagggcggauccgcuucuaauauuuuuuuguaguuauuauuauaauaauaaucauguuuauuacuuaaaaagcuuaauggcuuaaucuugccuuacuguuugauuaacaacaaaucuuacagucgcguaagcggggcauaggaucacaagauacaaaaaggaaagaucuuggauuuuuggaaaagcuacgcuagggauaacaggcuaauuugcgcaagaguguacaaaaugagugcgcgguuuggcaccuccggcuugacuaauccucauggaugcagaaacuauguaggguacgacuguucgucgauuaaaaaguuacaugagcuggguuaaauacgucgugagacaguaugguuucuaucuucuagagggaauuagaauauaauaaggauuaaccuuuguacgaaaggaacaugggguacuauuguuaacaguuuuauuaaccucugguuuaccuguuguuuaugugccuuagggauguuaccgucacuugaguaaauacaauagcauaagcauggcaggaaagcuaaguuagucaaaaauaagugcugaaagcauauaggcacgaaauuuaccuuaagauauuucuuaaauauacguaagaaaauauuacguuaauaggcuuaguuuguaauaaucuagagauuuuaaggaacuaaguacuaauuuuauaaaaaacugaaugauuaauauaucuuaca	<<<<..<<<<<<.......<<<<<<<<<..>>>>...<<<.......<<<<<<<<<<......<<.....<<<<<<<<..<<<<<<.....>>.....<<<<<<................>>>>>>....>>>>..<<....>>..........<<<<<<.....<<....>>......>>>>>.>.........<<....>>..<<<<<<.....<<....>>....>>>>>>..<<...............<<<<<<<<....>>>>>>>>........<<<<<..[[[[>>>>>...>>.......>>>>>>>>.................<<....>>....>>.......>>>>>>>>>>.......<<<<..<<.........>>..>>>>...<.<........>.>.<<<<<<....<<<<<<<<<<<<<..<<<.........>>>...<......>..<<<<<.....>>>>>...>>>>>>>>>>>>>..<<.<..<<<<<<<.....<<<<<<<<<..<<<<<....>>.>>>...<<<..<<<<........>>>>.>>>....>>>>>>>>>.....<<.....>>.......>>>>>>.>..>.>>..<<<<<<....<<<<<....>>>>>..<<<<<<<...<<<<<<.<<.....<<<...<..<<<<<<.<<<<<<<<..<..<<<<<<<<<..>>>>>>>>>>.>>>>.....>>>>.....<<<<.<<<<<.....>>>>>..>>>>>>>>.>>..>..>>.>.....>>.>>>>>>...>>>>>>>.....<<<<<<.<<<......>>>.>>>>>>....<<<......>>>...<<<<<.<<...<<<(((.....<<<<<<.....<<......<<..<<<<<<<........<<<<<<.<....<<<<.......>>>>....>........<<<......>>>..>>>>>>......>>>>>>>.>>...........)))>>...>>>>>>.>>>...>>>>>>><<<<..<<<<<<<<<<<<....>>>>>>>>>>>>...>>>>....>>>>>>..<<<<<<..<<<....<<..<<..<<...>>..>>..>>....>>>.>>>>>>........>>>>>><......<<.....<<<.<<<<<<<<<<<.....>>>>>>>>>>>.>>><<<<<...<<<<<.<<........((...<<<.<<<...<<<.<<<<<<<..>>>>>>>>>>...>>>....)).........<<<.<<..(((((..>>.>>>..............>>>..>>......<<......>>>>>>>..<<<.....>>>..>>>>>....<<<<....<<<<<<<<.<<.........<......<<.<<....<<..>>.....>>>>..<<<.<<...<<<<..>>>>....>>.>.>>.............<<<<<<<<<..<<<.........>>>..<<<<<<.......<<<<.....>>>>.......>>>>>>....<<.<<<..<<<<<<<..<<....<.......<<<<<<<.......>>>>>>>.......>....>>>>>>>..>>>>><<<<<........>>>>>........<...........<<<<<<.....>>>>>>.....>....>>.....>>.>>>>>>>..>..>>.>>>>>>>>.>>>>>>.....>.....<<<<<........>>>>>..<<<<<<<..<<<.<<......<<<<.<<<<<<..<<<<<..<<<<<.<<..<<<<<<<<...<<<<<...........<<<<<<.<<<.....>>>...........>>>>>>..>>>>>.>>>>>>>>......<<<<.....>>>>....>>.>>>>>...>>>>>...<<.......>>.<<<<<<...........>>>>.>>..<<.....<.......<<<..<<<<...>>>>..>>>.>..........<<<<<<.......>>>>>>.............<<<<<<<<<......>>>>>>>>>................<<<<<<<.....<<<<.........>>>>.<<<<..<<<<<<<.<<<.<..<<<<<..>>>>>.>>>>.>>>.>>>>...<<<<<<<<<..>>>>>>>>>........>>>>......<<<...(((>>>...>>>>>>>...<<<<..<<<.........>>>..>>>>.<<<....>>>.>>))).......<<<<<<.<...]]]]...>>>>>>>............>>>>..>>>>>>.......<<<<.<...<<<<<...<.........>...>>>>>....>>>>.>...<<<<.<<<<<...<<<<<<<<.........>>>>>..>>>..<<<<.....>>>>.......>>>>..>...>>>.>.....<<<<<<<....>>>.>>>>....>>..>>>.>>>>>>>.....<<<<<<...<<<<<...<<<<<...............>.>>......<<<<<..>>>>>>>.<<<<<<...<<<<...<<<<<<<<<<<<<<.<<<..>>>...<<<<...)))))..>>>>........>>>>>>>>>..>>>>>...>>>>.>>>>>>..<<<.<..<<<<<...........>>>>>...>>>>.>>>>>...>>>.>>>....<<<.<<<<<.......>>>>>....<<<<<<<<<<<<.....<<<<....>>>>....>>.>>>>>>>.>>>.....>>>....>>>>>>>>.....>>>>>>>>>>.	((((..((((((.......(((((((((..))))...(((..(....((((((((((...[.(((....((((((((((.(((((..{..[.)...[.((((((...........}.]].))))))....))))..((....))..........((((((.....(......)......))))).).........((....))...(((((.....((....))....)))))...(((..............((((.((......)).))))........(((((..{{{{)))))..)))......))))))))).)...............((....))....)).).....)))))))))).....(.((((..((.........))..)))).{.(.(........).).((((((..(.(((((((((((((..((...........))...(......)..((((.......))))...)))))))))))))..((.(...((((((.....((((((((((.((((......){)))...(((..((((.......A)))).)))..).))))))))).(...((.....))....)..))))))....).))).((((((....(((((....)))))...(((((([.(((((((.((.....(((...(..((((((.((((((((..(..((((((((.().))))))))).)))).....))))......((..(.(((.....))).)...)).)))).))..)..)).).....)).)))))).])))))))......((((((.(((......))).))))))....(((......)))...(((((.((...((([[[...(.((((((.....((......((..(((((((.......<((((((......(((.........)))..........(..(((......)))).))))))......))))))).))...........]]]))...))))))))))...)))))))(((((.((((((((((((....)))))))))))).).))))....))))))(.((((((..(((.....(.]((..((...))..))..).....))).))))))..).....))))))(......((.....(((.(((((((((((.....))))))))))).)))((((....((((..((.(......[[...(((.(((.(.(((.((((((....)))))))))..))))....]](........(((.((..[[[[[..)).))).(..).......).))).)))......((......)).))))..((.......))...))))....((((....((((((((.((..(....(........((.((....(.[..).....))))..(((.((..(((((..)))).<).)).).)).(...).......(((((((((.}.((.........))...((((((........(((.....)))........)))))).]..((.(((..(((((((..((....(.......(((((((.......))))))).......)....)))))))..)))))(((((........)))))........((..........((((((.....))))))..)..)....)).....)).))))))).)..))).)))))))).)))))).....)).[..(((((.....}].)))))..(((((((..(((.((......((((.((((((..(((((..(((((.((..((((((((...(((((.(......[..(((((..(((.....)))..........].)))))).))))).))))))))......((((.....))))....)).)))))...)))))...((.......)).((((((...........)))).))..((.....(.......(((..((((...))))..))).)......(...((((((.......))))))...........)...(..(.(........).)..)..................(((((((..((.((((.........)))).((((..(((((((.(((.((.((.((..)).))))))).))).))))...(((((((((())))))))))........))))....)).((...[[[))....)))))))...((((..(((......<..)))..)))).(((....))).))]]].......((((((.(...}}}}...))))))).......>....))))..)))))).......((((.(...(((((...((.......))...)))))....)))).)...((((.(((((...((((((((.........)))))..)))..((((.....)))).......))))..)...))).).....(((((((....))).))))..a.))..))).)))))))....)((((((...(((((...((((......(....)......))......(((((..))))))).((((((...((((...((((((((((((((.(((()))).(.((((...]]]]]..)))).....)>.)))))))))..)))))...)))).))))))..(((....(((((....>......)))))....))).)))))...))).)))....(((.(((((.......)))))....((((((((((((.....((((....))))....))).)))))).))).....)))....)))))))).....)))))))))).	The structure of the mitoribosome from Neurospora crassa with tRNA bound to the E-site; 23S rRNA
6ywy	A	2843	3.05	RF02541,RF02540	URS00021ED918_5141	33056988		0003735		0005840	5141	guaauggauauaaagcuuauguuuauauauauauauaaguauauaaagagacuacuaccaauagcuacacuauguauuaaggagaguauaacuuaauuuauguuuaugauagagguuaucaacauaugaacucuuagagaaauuacuuaauaaacgaagugaauugaaauaucuuauuaacuucaggaaaagaaaucaaacgagauucuaugauuagugugaacgaaaauagagcagccuauuaaaauaaguaaaauggcuuuaaagcuguuugaauauuguggggaaccuuccucaaaggcuaaauauaauacaugaguuacagagaaaaguaccgugagggaaagcuuugaaauaguaguuuuauaagcagcucaagcaauaagaaagcgagagcguaccuuuugcauaaugggucaccaaguuaauuuuagaugcgagcgaauuagaugugcauaguuaaaccgaucauuaaaauaaugaauagugucuaaaguuagacccgaagccuggugaucuuacuauagucaggacuauaaagguccgaacggguuaucguugcaaagauauccgaagaacuaugguaagcgagugaaagacaacacugacuaggauagcugguuuucugcgaaaccuauaauaguaggcaauuuaaguaacaucuuaguagguacagaacuuaaucucagacaagauguagauuuucauaccuagguaugaaaugcauuuuuuuuuguauacaucgggggaucgugaagauuuuaucggugaguauguagacucggaaugacaaagaugaaucuugaauaaucagacauagaaugauaagguuguaugucaaaagggaaacagcccagaacaagaguuaagguuccaaaauuauuauuaagugaaauaaagaaaguuuuuauauaagucgacaagaagaugggcuuggaagcagccauaauuuaaagaucucguaacagagcacuuguuaaaucuuaaaagcaucgaaaauuuaacggaucuaaauaauauaccgaaaccuuguccauauguaacauuaguaauaauauuaauguuauuugaugggguagcagaacguugagugaaucuuagauuuuuuuuuuauaacuaaauauagaugauaacucaagugagaauggugacaugaguaacaaaaaagaguuuaagguaccuaaaagguaucuuagagucucgccuaaagcuuauggcuacgucaaguaacggccucuaaguuuauaaucugaagauuaugacgaugagaaaacuuugguaccaacauuuaaaagugaaaauugugcaggaaggauaaaccguaccuagaaucugaaacaaguaagcuaguagagaauacgaaggcgugaaugagauaacaaucauaaaggaacucggcaaacuaacuaccguaacuuagggauaaggagagcucauuagucucgaacgaguaaaaaggaagaagcauggaauauuguuguacgacuguuuaauuaaaacaaagcacuuugcaaaaagacgauaagucuaaguauugagugugauuucugcccgaugccggcugguuaacgaauuuucuaaauugaaaaaaaauuugguuucagaggaacccccgguuaauggcggccuuagcgugaggguccuaagguagcgaaaugccuuggccguuaaaugcggucuugcaugaaugauguaacgauacaacagcugucucuaugauugacucagugaaauuggaauaacugugcagauacaguuuaccucuaguuagacgagaagacccuaugcagcuuuacuguuacuaauuauugaauacgauucugaaaauuuccaguguaaaagguaaucgauaagauauaauugaaacaccuuuauuuuucuaucguauuauuaaaccuuaaauuaaggaacaauuguuagaagacaguuuaugcggggcacaggccccauaaagaguaaaugggugugucuaaaauguuugcaauuuuuuauaguauauaucaaaucaucuuuaugcuauucauagaccuuggguacaguauaaaaauuauauauguauuaauuuacauauauuuuuucuaagaaauuagguaagauuuuguuuauagagaaauuagauguaaaaaaaaaaucuuaugagggcggauccgcuucuaauauuuuuuuguaguuauuauuauaauaauaaucauguuuauuacuuaaaaagcuuaauggcuuaaucuugccuuacuguuugauuaacaacaaaucuuacagucgcguaagcggggcauaggaucacaagauacaaaaaggaaagaucuuggauuuuuggaaaagcuacgcuagggauaacaggcuaauuugcgcaagaguguacaaaaugagugcgcgguuuggcaccucgaugucggcuugacuaauccucauggaugcagaaacuauguaggguacgacuguucgucgauuaaaaaguuacaugagcuggguuaaauacgucgugagacaguaugguuucuaucuucuagagggaauuagaauauaauaaggauuaaccuuuguacgaaaggaacaugggguacuauuguuaacaguuuuauuaaccucugguuuaccuguuguuuaugugccuuagggauguuaccgucacuugaguaaauacaauagcauaagcauggcaggaaagcuaaguuagucaaaaauaagugcugaaagcauauaggcacgaaauuuaccuuaagauauuucuuaaauauacguaagaaaauauuacguuaauaggcuuaguuuguaauaaucuagagauuuuaaggaacuaaguacuaauuuuauaaaaaacugaaugauuaauauaucuuaca	<<<<..<<<<<<.......<<<<<<<<<..>>>>...<<<.......<<<<<<<<<<......((.....<<<<<<<<<.<<<<<<.....>>.....<<<<<<................>>>>>>....>>>>..<<....>>..........<<<<<<.....<......>......>>>>>.>.........<<....>>..<<<<<<.....<<....>>....>>>>>>..((...............<<<<<<<<....>>>>>>>>........<<<<<..<<<<>>>>>...))......>>>>>>>>>.................<<....>>....)).......>>>>>>>>>>.......<<<<..<<.........>>..>>>>...<.<........>.>.<<<<<<....<<<<<<<<<<<<<..<<...........>>...<......>..<<<<<.....>>>>>...>>>>>>>>>>>>>..<<.<..<<<<<<<.....<<<<<<<<<..<<<<<....>>.>>>...<<<..<<<<........>>>>.>>>....>>>>>>>>>.....<<.....>>.......>>>>>>.>..>.>>..<<<<<<....<<<<<....>>>>>..<<<<<<<...<<<<<<.<<.....<<<...<..<<<<<<.<<<<<<<<..<..<<<<<<<<<..>>>>>>>>>>.>>>>.....>>>>.....<<<<.<<<<<.....>>>>>..>>>>>>>>.>>..>..>>.>.....>>.>>>>>>...>>>>>>>.....<<<<<<.<<<......>>>.>>>>>>....<<<......>>>...<<<<<.<<...<<<(((.....<<<<<<.....<<......<<..<<<<<<<........<<<<<<.<....<<<<.......>>>>....>........<<<......>>>..>>>>>>......>>>>>>>.>>...........)))>>...>>>>>>.>>>...>>>>>>><<<<..<<<<<<<<<<<<....>>>>>>>>>>>>...>>>>....>>>>>>..<<<<<<..<<<....<<..<<..<<...>>..>>..>>....>>>.>>>>>>........>>>>>><......<<.....<<<.<<<<<<<<<<<.....>>>>>>>>>>>.>>><<<<<...<<<<<.<<........((...<<<.<<<...<<<.<<<<<<<..>>>>>>>>>>...>>>....)).........<<<.<<..(((((..>>.>>>..............>>>..>>......<<......>>>>>>>..<<<.....>>>..>>>>>....<<<<....<<<<<<<<.<<.........<......<<.<<....<....>.....>>>>..<<<.<<...<<<<..>>>>....>>.>.>>.............<<<<<<<<<..<<<.........>>>..<<<<<<.......<<<<.....>>>>.......>>>>>>....<<.<<<..<<<<<<<..<<....<.......<<<<<<<.......>>>>>>>.......>....>>>>>>>..>>>>><<<<<........>>>>>........<...........<<<<<<.....>>>>>>.....>....>>.....>>.>>>>>>>..>..>>.>>>>>>>>.>>>>>>.....>.....<<<<<........>>>>>..<<<<<<<..<<<.[[......<<<<.[[<<<<..<<<<<..<<<<<.<<..<<<<<<<<...<<<<<...........<<<<<<.<<<.....>>>...........>>>>>>..>>>>>.>>>>>>>>......<<<<.....>>>>....>>.>>>>>...>>>>>...<<.......>>.<<<<<<...........>>>>.>>..<<.....<.......<<<..<<<<...>>>>..>>>.>..........<<<<<<.......>>>>>>.............<<<<<<<<<......>>>>>>>>>................<<<<<<<.....<<<<.........>>>>.<<<<..<<<<<<<.<<<.<..<<<<<..>>>>>.>>>>.>>>.>>>>...<<<<<<<<<..>>>>>>>>>........>>>>......<<<...(((>>>...>>>>>>>...<<<<..<<<.........>>>..>>>>.<<<....>>>.>>))).......<<<<<<.(...>>>>...)>>>>>>............>>>>..]]>>>>.......<<<<.<...<<<<<...<.........>...>>>>>....>>>>.>.......<<<<<.<<<<<...<<<<<<<<.........>>>>>..>>>..<<<<.....>>>>.......>>>>..>...>>>.>>....<<<<<<<....>>>.>>>>....]]..>>>.>>>>>>>.....<<<<<<...<<<<<...<<<<<...............>.>>......<<<<<..>>>>>>>.<<<<<<...<<<<...<<<<<<<<<<<<<<.<<<..>>>...<<<<...)))))..>>>>........>>>>>>>>>..>>>>>...>>>>.>>>>>>..<<<.<..<<<<<...........>>>>>...>>>>.>>>>>...>>>.>>>....<<<.<<<<<.......>>>>>....<<<<<<<<<<<<.....<<<<....>>>>....>>>.>>>>>>.>>>.....>>>....>>>>>>>>.....>>>>>>>>>>.	((((..((((((.......(((((((((..))))...(((..(....((((((((((...[.(((....((((((((((.(((((..{..[.)...[.((((((...........}.]].))))))....))))..((....))..........((((((.....(......)......))))).).........((....))...(((((.....((....))....)))))...(((..............(((((((......)))))))........(((((..{{{{)))))..)))......))))))))).)...............((....))....)).).....)))))))))).....(.((((..((.........))..)))).{.(.(........).).((((((....(((((((((((((..((...........))...(......)..((((.......))))...)))))))))))))..((.(...((((((.....((((((((((.((((......){)))...(((..((((.......A)))).)))..).))))))))).(...((.....))....)..))))))....).))..((((((....(((((....)))))...((((((..(((((((.((.....(((...(..((((((.((((((((.....((((((((....))))))))..)))).....))))......(((.(.(((.....))).)..))).)))).))..)..)).).....)).))))))..)))))))......((((((.(((......))).))))))....(((......)))...(((((.((...((([[[...(.((((((.....((......((..(((((((.......<((((((......(((.........)))..........(..(((......)))).))))))......))))))).))...........]]]))...))))))))))...)))))))(((((.((((((((((((....)))))))))))).).))))....))))))(.((((((..(((.....(.]((..((...))..))..).....))).))))))..).....))))))(......((.....(((.(((((((((((.....))))))))))).)))((((....((((..((.(......[[...(((.(((.(.(((.((((((....)))))))))..))))....]](........(((.((..[[[[[..)).))).(..).......).))).)))......((......)).))))..((.......))...))))....((((....((((((((.((..(....(........((.((....(.[..).....))))..(((.((..(((((..)))).<).)).).)).(...).......(((((((((.}.((.........))...((((((........(((.....)))........)))))).]..((.(((..(((((((..((....(.......(((((((.......))))))).......)....)))))))..)))))(((((........)))))........((..........((((((.....))))))..)..)....)).....)).))))))).)..))).)))))))).)))))).....)).[..(((((.....}].)))))..(((((((..(((.((......((((.((((((..(((((..(((((.((..((((((((...(((((.(......[..(((((..(((.....)))..........].)))))).))))).))))))))......((((.....))))....)).)))))...)))))...((.......)).((.(((...........)))..))(.((.....(.......(((..((((...))))..))).)......(...((((((.......))))))...........).(.((.(((........))).)).)................(((((((..((.((((.........)))).((((..((..(((.(((.((.((.((..)).))))))).))..).))...(((((((((())))))))))........))))....)).((...[[[))....)))))))...((((..(((......<..)))..)))).(((....))).))]]].......((((((.(...}}}}...)))))))......)>....))))..))))))......(((((.(...(((((...((.......))...)))))....)))).).).....(((((.(((((...((((((((.........)))))..)))..((((.....)))).......))))..)...))).))....(((((((....))).))))..a.))..))).)))))))....)((((((...(((((...((((......(....)......))......(((((..))))))).((((((...((((...((((((((((((((.(((()))).(.((((...]]]]]..)))).....)>.)))))))))..)))))...)))).))))))..(((....(((((....>......)))))....))).)))))...))).)))....(((.(((((.......)))))....((((((((((((.....((((....))))....))).)))))).))).....)))....)))))))).....)))))))))).	The structure of the mitoribosome from Neurospora crassa with bound tRNA at the P-site; 23S rRNA
7d7v	A	57	2.8	RF03013	URS00021ED9BF_240015	33170270					240015	gcgcaacauccccgccgguugggcgcauugcacuccgcgcagugaaccggcugcgcc	<<<<.........<<<<<<<..<<<<..........>>>>....>>>>>>>.>>>>.	(((((.....[[.((((((((.((((..........)))).])])))))))))))).	Crystal Structure of the Domain1 of NAD+ Riboswitch with nicotinamide adenine dinucleotide (NAD+) and U1A protein; 17delU1A (58-MER)
7d7w	A	51	2.391	RF03013	URS00021ED902_32630	33170270					32630	gcuucaacaaccccguagguggggacgaaagucagcgcaccuacuggagcc	<<<<<.........<<<<<<<..<<<....>>>....>>>>>>>.>>>>>.	((((((.....[[.((((((((.(((....))).])]))))))))))))).	Crystal Structure of the Domain1 of NAD+ Riboswitch with nicotinamide adenine dinucleotide (NAD+); 18GAAA (52-MER)
7d7z	A	51	2.6	RF03013	URS00021ED902_32630	33170270					32630	gcuucaacaaccccguagguggggacgaaagucagcgcaccuacuggagcc	<<<<<.........<<<<<<<..<<<....>>>....>>>>>>>.>>>>>.	((((((.....[[.((((((((.(((....))).])]))))))))))))).	Crystal Structure of the Domain1 of NAD+ Riboswitch with nicotinamide adenine dinucleotide (NAD+), soaked in Mn2+; 18GAAA(52-MER)
7d81	A	50	2.1	RF03013	URS00021ED956_1267533	33170270					1267533	gguuucaacauccccguucggcgcucgaaagagguggccggacugaagcc	<<<<<<.........<<<<<<<<<<<....>>>.>.>>>>>>>.>>>>>>	(((((((........(((((((.(((....)))...))))))))))))))	Crystal Structure of the Domain2 of NAD+ Riboswitch with nicotinamide adenine dinucleotide (NAD+); 832GAAA (50-MER)
7d82	A	50	2.489	RF03013	URS00021ED956_1267533	33170270					1267533	gguuucaacauccccguucggcgcucgaaagagguggccggacugaagcc	<<<<<<.........<<<<<<<.<<<....>>>...>>>>>>>.>>>>>>	(((((((........(((((((..((....))....))))))))))))))	Crystal Structure of the Domain2 of NAD+ Riboswitch with nicotinamide adenine dinucleotide (NAD+), soaked in Mn2+; 832GAAA (50-MER)
7p2e	A	955	2.4	RF00177	URS0001A24B4C_9606	36480258		0003735		0005840	9606	aauagguuugguccuagccuuucuauuagcucuuaguaagauuacacaugcaagcauccccguuccagugaguucacccucuaaaucaccacgaucaaaagggacaagcaucaagcacgcagcaaugcagcucaaaacgcuuagccuagccacacccccacgggaaacagcagugauuaaccuuuagcaauaaacgaaaguuuaacuaagcuauacuaaccccaggguuggucaauuucgugccagccaccgcggucacacgauuaacccaagucaauagaagccggcguaaagaguguuuuagaucacccccuccccaauaaagcuaaaacucaccugaguuguaaaaaacuccaguugacacaaaauagacuacgaaaguggcuuuaacauaucugaacacacaauagcuaagacccaaacuggganuagauaccccacuaugcuuagcccuaaaccucaacaguuaaaucaacaaaacugcucgccagaacacuacgagccacagcuuaaaacucaaaggaccuggcggugcuucauaucccucuagaggagccuguucuguaaucgauaaaccccgaucaaccucaccaccucuugcucagccuauauaccgccaucuucagcaaacccugaugaaggcuacaaaguaagcgcaaguacccacguaaagacguuaggucaagguguagcccaugagguggcaagaaaugggcuacauuuucuaccccagaaaacuacgauagcccuuaugaaacuuaagggucgaagguggauuuagcaguaaacugagaguagagugcuuaguugaacagggcccugaagcgcguacacaccgncngucacccuccucaaguauacuucaaaggacauuuaacuaaaaccccuacgcauuuauauagaggagacaagucguaacaugguaaguguacuggnnagugcacuuggacgaacc	...((((..<<<<<<.)))).<<<<<<.<<..<<<<<<<<....<<<.<<<..<......>......<<.......<<<<.<..<<<.....>>>.>..>>>>..<<<<....<<...<<<....>>>..>>......>>>>.<<...>>.>>.<<<....>>>.....>>>>>>.........<<<....<<<<....>>>>..>>>..>>.>>>>>>.....<<<<<<<<.....(((.....((.>>>)).......)))..>>>>>..>>.>>>>>>....<<<((.....<<<<..<<<<...............<<<<<<......<<<.<<<.<<<......>>>..>>>.>>>.............<<....>>.>>>>>>.....>>>>...>>>>....<<<<<<...<<...<<<<.<.....>.>>>>...>>>>>>>>..........<.<<<<<......))..>>>>>.>.>>>.<<.......<<<<....>>>>.....>>..>>>>>><<<<<.<<<<<<<...<<<.<<<<<..<<<<<<<<<<.....<<........>>..........<<<<<<<.......<<.<<<..<<<<<<.......<<..<<<<<.....>>>.......>>..>>.....<<<....>>>.........>>>...>>>>>>>>....>>>>>>>..>>.>>>>>>>>.....<<<<.....>>>>.....<....<<<<<<<.......>>>>>>>....>.....>>>>>.....<<<<<<<.........>>>>>>>.....>>>...>>>>>>>>>>.>>....<..<<.<...<<<<<<..<<<<<......<<<....<<.....>>...>>>.......>>>>>.>>>>>>....>.>>...>.....<<<<<<<<<....>>>>>>>>>.........	.[.[[[[..(((((..]]]]]((((((.((..((((((((..(.(((.(((..(......)......(((......((((.(..(((.....))).)..))))..((((....((..((((....))).)))......)))).((...))))).(((....))).....)))))))......(.(((...(((((....)))).))))).)).)))))).....((((([[[.....(((.....((.]]])).......)))..)))))..)).))))))....((([[...(.((((...(((...............(((((((.....(((.(((.((........))..))).))).....).....(.((....))))))))).....)))....))))....((((((...((...((((.........))))...))))))))......{...(.(((((......]]..))))).))))).((.......((((....)))).....))...)))))(((((.(((((((...(((.(((((..((((((((((.....((........))..........(((((((.......((.(((...((((((.(....((..(((((.....))).......))..)).....(((....))).....).).)))...)).)))))....)))))))..)).)))))))).(...((((.....)))).....(....(((((((.......)))))))....)..)..))))).....(((((((.........))))))).....)))...)))))))))).))..(.(..((.(...((((((..(((((..((..(((....((.....))...)))..).)..))))).))))))....).))...)..)..(((((((((....)))))))))}........	Human mitochondrial ribosome small subunit in complex with IF3, GMPPMP and streptomycin; 12S mitochondrial rRNA
7pnx	A	951	2.76	RF00177	URS0001A24B4C_9606	35676484		0003735		0005840	9606	aauagguuugguccuagccuuucuauuagcucuuaguaagauuacacaugcaagcauccccguuccagugaguucacccucuaaaucaccacgaucaaaagggacaagcaucaagcacgcagcaaugcagcucaaaacgcuuagccuagccacacccccacgggaaacagcagugauuaaccuuuagcaauaaacgaaaguuuaacuaagcuauacuaaccccaggguuggucaauuucgugccagccaccgcggucacacgauuaacccaagucaauagaagccggcguaaagaguguuuuagaucacccccuccccaauaaagcuaaaacucaccugaguuguaaaaaacuccaguugacacaaaauagacuacgaaaguggcuuuaacauaucugaacacacaauagcuaagacccaaacuggganuagauaccccacuaugcuuagcccuaaaccucaacaguuaaaucaacaaaacugcucgccagaacacuacgagccacagcuuaaaacucaaaggaccuggcggugcuucauaucccucuagaggagccuguucuguaaucgauaaaccccgaucaaccucaccaccucuugcucagccuauauaccgccaucuucagcaaacccugaugaaggcuacaaaguaagcgcaaguacccacguaaagacguuaggucaagguguagcccaugagguggcaagaaaugggcuacauuuucuaccccagaaaacuacgauagcccuuaugaaacuuaagggucgaagguggauuuagcaguaaacugagaguagagugcuuaguugaacagggcccugaagcgcguacacaccgncngucacccuccucaaguauacuucaaaggacauuuaacuaaaaccccuacgcauuuauauagaggagacaagucguaacaugguaaguguacuggnnagugcacuuggacg	...((((..<<<<<<.)))).<<<<<<.<<..<<<<<<<<....<<<.<<<..<......>......<<.......<<<<.<..<<<.....>>>.>..>>>>..<<<<....<<...<<<....>>>..>>......>>>>.<<...>>.>>.<<<....>>>.....>>>>>>.........<<<....<<<<....>>>>..>>>..>>.>>>>>>.....<<<<<<<<.....(((.....((.>>>)).......)))..>>>>>..>>.>>>>>>....<<<((.....<<<<..<<<<...............<<<<<<......<<<.<<<.<<<......>>>..>>>.>>>.............<<....>>.>>>>>>.....>>>>...>>>>....<<<<<<...<<...<<<<.<.....>.>>>>...>>>>>>>>..........<.<<<<<......))..>>>>>.>.>>>.<<.......<<<<....>>>>.....>>..>>>>>><<<<<.<<<<<<<...<<<.<<<<<..<<<<<<<<<<.....<<........>>..........<<<<<<<.......<<.<<<..<<<<<<.......<<..<<<<<.....>>>.......>>..>>.....<<<....>>>.........>>>...>>>>>>>>....>>>>>>>..>>.>>>>>>>>.....<<<<.....>>>>.....<....<<<<<<<.......>>>>>>>....>.....>>>>>.....<<<<<<<.........>>>>>>>.....>>>...>>>>>>>>>>.>>....<..<<.<...<<<<<<..<<<<<......<<<....<<.....>>...>>>.......>>>>>.>>>>>>....>.>>...>.....<<<<<<<<<....>>>>>>>>>.....	.[.[[[[..(((((..]]]]]((((((.((..((((((((..(.(((.(((..(......)......(((......((((.(..(((.....))).)..))))..((((....((..((((....))).)))......)))).((...))))).(((....))).....)))))))......(.(((...(((((....)))).))))).)).)))))).....((((([[[.....(((.....((.]]])).......)))..)))))..)).))))))....((([[...(.((((...(((...............(((((((.....(((.(((.((........))..))).))).....).....(.((....))))))))).....)))....))))....((((((...((...((((.........))))...))))))))......{...(.(((((......]]..))))).))))).((.......((((....)))).....))...)))))(((((.(((((((...(((.(((((..((((((((((.....((........))..........(((((((.......((.(((...((((((.(....((..(((((.....))).......))..)).....(((....))).....).).)))...)).)))))....)))))))..)).)))))))).(...((((.....)))).....(....(((((((.......)))))))....)..)..))))).....(((((((.........))))))).....)))...)))))))))).))..(.(..((.(...((((((..(((((..(...(((....((.....))...)))....)..))))).))))))....).))...)..)..(((((((((....)))))))))}....	Assembly intermediate of human mitochondrial ribosome small subunit without mS37 in complex with RBFA and METTL15 conformation a; 12S mitochondrial rRNA
7pny	A	951	3.06	RF00177	URS0001A24B4C_9606	35676484		0003735		0005840	9606	aauagguuugguccuagccuuucuauuagcucuuaguaagauuacacaugcaagcauccccguuccagugaguucacccucuaaaucaccacgaucaaaagggacaagcaucaagcacgcagcaaugcagcucaaaacgcuuagccuagccacacccccacgggaaacagcagugauuaaccuuuagcaauaaacgaaaguuuaacuaagcuauacuaaccccaggguuggucaauuucgugccagccaccgcggucacacgauuaacccaagucaauagaagccggcguaaagaguguuuuagaucacccccuccccaauaaagcuaaaacucaccugaguuguaaaaaacuccaguugacacaaaauagacuacgaaaguggcuuuaacauaucugaacacacaauagcuaagacccaaacuggganuagauaccccacuaugcuuagcccuaaaccucaacaguuaaaucaacaaaacugcucgccagaacacuacgagccacagcuuaaaacucaaaggaccuggcggugcuucauaucccucuagaggagccuguucuguaaucgauaaaccccgaucaaccucaccaccucuugcucagccuauauaccgccaucuucagcaaacccugaugaaggcuacaaaguaagcgcaaguacccacguaaagacguuaggucaagguguagcccaugagguggcaagaaaugggcuacauuuucuaccccagaaaacuacgauagcccuuaugaaacuuaagggucgaagguggauuuagcaguaaacugagaguagagugcuuaguugaacagggcccugaagcgcguacacaccgncngucacccuccucaaguauacuucaaaggacauuuaacuaaaaccccuacgcauuuauauagaggagacaagucguaacaugguaaguguacuggnnagugcacuuggacg	...((((..<<<<<<.)))).<<<<<<.<<..<<<<<<<<....<<<.<<<..<......>......<<.......<<<<.<..<<<.....>>>.>..>>>>..<<<<....<<...<<<....>>>..>>......>>>>.<<...>>.>>.<<<....>>>.....>>>>>>.........<<<....<<<<....>>>>..>>>..>>.>>>>>>.....<<<<<<<<.....(((.....((.>>>)).......)))..>>>>>..>>.>>>>>>....<<<((.....<<<<..<<<<...............<<<<<<......<<<.<<<<<<<......>>>>.>>>.>>>.............<<....>>.>>>>>>.....>>>>...>>>>....<<<<<<...<<...<<<<.<.....>.>>>>...>>>>>>>>..........<.<<<<<......))..>>>>>.>.>>>.<<.......<<<<....>>>>.....>>..>>>>>><<<<<.<<<<<<<...<<<.<<<<<..<<<<<<<<<<.....<<........>>..........<<<<<<<.......<<.<<<..<<<<<<.......<<..<<<<<.....>>>.......>>..>>.....<<<....>>>.........>>>...>>>>>>>>....>>>>>>>..>>.>>>>>>>>.....<<<<.....>>>>.....<....<<<<<<<.......>>>>>>>....>.....>>>>>.....<<<<<<<.........>>>>>>>.....>>>...>>>>>>>>>>.>>....<..<<.<...<<<<<<..<<<<<......<<<....<<.....>>...>>>.......>>>>>.>>>>>>....>.>>...>.....<<<<<<<<<....>>>>>>>>>.....	.[.[[[[..(((((..]]]]]((((((.((..((((((((..(.(((.(((..(......)......(((......((((.(..(((.....))).)..))))..((((....((..((((....))).)))......)))).((...))))).(((....))).....)))))))......(.(((...(((((....)))).))))).)).)))))).....((((([[[.....(((.....((.]]])).......)))..)))))..)).))))))....((([[...(.((((...(((...............(((((((.....(((.(((((((......)))).))).))).....).....(.((....))))))))).....)))....))))....((((((...((...((((.........))))...))))))))......{...(.(((((......]]..))))).))))).((.......((((....)))).....))...)))))(((((.(((((((...(((.(((((..((((((((((.....((........))..........(((((((.......((.(((...((((((.(....((..(((((.....))).......))..)).....(((....))).....).).)))...)).)))))....)))))))..)).)))))))).(...((((.....)))).....(....(((((((.......)))))))....)..)..))))).....(((((((.........))))))).....)))...)))))))))).))..(.(..((.(...((((((..(((((..(...(((....((.....))...)))....)..))))).))))))....).))...)..)..(((((((((....)))))))))}....	Assembly intermediate of human mitochondrial ribosome small subunit without mS37 in complex with RBFA and METTL15 conformation b; 12S mitochondrial rRNA
7pnz	A	951	3.09	RF00177	URS0001A24B4C_9606	35676484		0003735		0005840	9606	aauagguuugguccuagccuuucuauuagcucuuaguaagauuacacaugcaagcauccccguuccagugaguucacccucuaaaucaccacgaucaaaagggacaagcaucaagcacgcagcaaugcagcucaaaacgcuuagccuagccacacccccacgggaaacagcagugauuaaccuuuagcaauaaacgaaaguuuaacuaagcuauacuaaccccaggguuggucaauuucgugccagccaccgcggucacacgauuaacccaagucaauagaagccggcguaaagaguguuuuagaucacccccuccccaauaaagcuaaaacucaccugaguuguaaaaaacuccaguugacacaaaauagacuacgaaaguggcuuuaacauaucugaacacacaauagcuaagacccaaacuggganuagauaccccacuaugcuuagcccuaaaccucaacaguuaaaucaacaaaacugcucgccagaacacuacgagccacagcuuaaaacucaaaggaccuggcggugcuucauaucccucuagaggagccuguucuguaaucgauaaaccccgaucaaccucaccaccucuugcucagccuauauaccgccaucuucagcaaacccugaugaaggcuacaaaguaagcgcaaguacccacguaaagacguuaggucaagguguagcccaugagguggcaagaaaugggcuacauuuucuaccccagaaaacuacgauagcccuuaugaaacuuaagggucgaagguggauuuagcaguaaacugagaguagagugcuuaguugaacagggcccugaagcgcguacacaccgncngucacccuccucaaguauacuucaaaggacauuuaacuaaaaccccuacgcauuuauauagaggagacaagucguaacaugguaaguguacuggnnagugcacuuggacg	...((((..<<<<<<.)))).<<<<<<.<<..<<<<<<<<....<<<.<<<..<......>......<<.......<<<<.<..<<<.....>>>.>..>>>>..<<<<....<<...<<<....>>>..>>......>>>>.<<...>>.>>.<<<....>>>.....>>>>>>.........<<<....<<<<....>>>>..>>>..>>.>>>>>>.....<<<<<<<<.....(((.....((.>>>)).......)))..>>>>>..>>.>>>>>>....<<<((.....<<<<..<<<<...............<<<<<<......<<<.<<<.<<<......>>>..>>>.>>>.............<<....>>.>>>>>>.....>>>>...>>>>....<<<<<<...<<...<<<<.<.....>.>>>>...>>>>>>>>..........<.<<<<<......))..>>>>>.>.>>>.<<.......<<<<....>>>>.....>>..>>>>>><<<<<.<<<<<<<...<<<.<<<<<..<<<<<<<<<<.....<<........>>..........<<<<<<<.......<<.<<<..<<<<<<.......<<..<<<<<.....>>>.......>>..>>.....<<<....>>>.........>>>...>>>>>>>>....>>>>>>>..>>.>>>>>>>>.....<<<<.....>>>>.....<....<<<<<<<.......>>>>>>>....>.....>>>>>.....<<<<<<<.........>>>>>>>.....>>>...>>>>>>>>>>.>>....<..<<.<...<<<<<<..<<<<<......<<<....<<.....>>...>>>.......>>>>>.>>>>>>....>.>>...>.....<<<<<<<<<....>>>>>>>>>.....	.[.[[[[..(((((..]]]]]((((((.((..((((((((..(.(((.(((..(......)......(((......((((.(..(((.....))).)..))))..((((....((..((((....))).)))......)))).((...))))).(((....))).....)))))))......(.(((...(((((....)))).))))).)).)))))).....((((([[[.....(((.....((.]]])).......)))..)))))..)).))))))....((([[...(.((((...(((...............(((((((.....(((.(((.((........))..))).))).....).....(.((....))))))))).....)))....))))....((((((...((...((((.........))))...))))))))......{...(.(((((......]]..))))).))))).((.......((((....)))).....))...)))))(((((.(((((((...(((.(((((..((((((((((.....((........))..........(((((((.......((.(((...((((((.(....((..(((((.....))).......))..)).....(((....))).....).).)))...)).)))))....)))))))..)).)))))))).(...((((.....)))).....(....(((((((.......)))))))....)..)..))))).....(((((((.........))))))).....)))...)))))))))).))..(.(..((.(...((((((..(((((..(...(((....((.....))...)))....)..))))).))))))....).))...)..)..(((((((((....)))))))))}....	Assembly intermediate of human mitochondrial ribosome small subunit without mS37 in complex with RBFA and METTL15 conformation c; 12S mitochondrial rRNA
7po0	A	951	2.9	RF00177	URS0001A24B4C_9606	35676484		0003735		0005840	9606	aauagguuugguccuagccuuucuauuagcucuuaguaagauuacacaugcaagcauccccguuccagugaguucacccucuaaaucaccacgaucaaaagggacaagcaucaagcacgcagcaaugcagcucaaaacgcuuagccuagccacacccccacgggaaacagcagugauuaaccuuuagcaauaaacgaaaguuuaacuaagcuauacuaaccccaggguuggucaauuucgugccagccaccgcggucacacgauuaacccaagucaauagaagccggcguaaagaguguuuuagaucacccccuccccaauaaagcuaaaacucaccugaguuguaaaaaacuccaguugacacaaaauagacuacgaaaguggcuuuaacauaucugaacacacaauagcuaagacccaaacuggganuagauaccccacuaugcuuagcccuaaaccucaacaguuaaaucaacaaaacugcucgccagaacacuacgagccacagcuuaaaacucaaaggaccuggcggugcuucauaucccucuagaggagccuguucuguaaucgauaaaccccgaucaaccucaccaccucuugcucagccuauauaccgccaucuucagcaaacccugaugaaggcuacaaaguaagcgcaaguacccacguaaagacguuaggucaagguguagcccaugagguggcaagaaaugggcuacauuuucuaccccagaaaacuacgauagcccuuaugaaacuuaagggucgaagguggauuuagcaguaaacugagaguagagugcuuaguugaacagggcccugaagcgcguacacaccgncngucacccuccucaaguauacuucaaaggacauuuaacuaaaaccccuacgcauuuauauagaggagacaagucguaacaugguaaguguacuggnnagugcacuuggacg	...((((..<<<<<<.)))).<<<<<<.<<..<<<<<<<<....<<<.<<<..<......>......<<.......<<<<.<..<<<.....>>>.>..>>>>..<<<<....<<...<<<....>>>..>>......>>>>.<<...>>.>>.<<<....>>>.....>>>>>>.........<<<....<<<<....>>>>..>>>..>>.>>>>>>.....<<<<<<<<.....(((.....((.>>>)).......)))..>>>>>..>>.>>>>>>....<<<((.....<<<<..<<<<...............<<<<<<......<<<.<<<.<<<......>>>..>>>.>>>.............<<....>>.>>>>>>.....>>>>...>>>>....<<<<<<...<<...<<<<.<.....>.>>>>...>>>>>>>>..........<.<<<<<......))..>>>>>.>.>>>.<<.......<<<<....>>>>.....>>..>>>>>><<<<<.<<<<<<<...<<<.<<<<<..<<<<<<<<<<.....<<........>>..........<<<<<<<.......<<.<<<..<<<<<<.......<<..<<<<<.....>>>.......>>..>>.....<<<....>>>.........>>>...>>>>>>>>....>>>>>>>..>>.>>>>>>>>.....<<<<.....>>>>.....<....<<<<<<<.......>>>>>>>....>.....>>>>>.....<<<<<<<.........>>>>>>>.....>>>...>>>>>>>>>>.>>....<..<<.<...<<<<<<..<<<<<......<<<....<<.....>>...>>>.......>>>>>.>>>>>>....>.>>...>.....<<<<<<<<<....>>>>>>>>>.....	.[.[[[[..(((((..]]]]]((((((.((..((((((((..(.(((.(((..(......)......(((......((((.(..(((.....))).)..))))..((((....((..((((....))).)))......)))).((...))))).(((....))).....)))))))......(.(((...(((((....)))).))))).)).)))))).....((((([[[.....(((.....((.]]])).......)))..)))))..)).))))))....((([[...(.((((...(((...............(((((((.....(((.(((.((........))..))).))).....).....(.((....))))))))).....)))....))))....((((((...((...((((.........))))...))))))))......{...(.(((((......]]..))))).))))).((.......((((....)))).....))...)))))(((((.(((((((...(((.(((((..((((((((((.....((........))..........(((((((.......((.(((...((((((.(....((..(((((.....))).......))..)).....(((....))).....).).)))...)).)))))....)))))))..)).)))))))).(...((((.....)))).....(....(((((((.......)))))))....)..)..))))).....(((((((.........))))))).....)))...)))))))))).))..(.(..((.(...((((((..(((((..(...(((....((.....))...)))....)..))))).))))))....).))...)..)..(((((((((....)))))))))}....	Assembly intermediate of human mitochondrial ribosome small subunit without mS37 in complex with RBFA and IF3; 12S mitochondrial rRNA
7qi4	AA	954	2.21	RF00177	URS00008F947B_9606	38769321,38769321,37503168		0003735		0005840	9606	auagguuugguccuagccuuucuauuagcucuuaguaagauuacacaugcaagcauccccguuccagugaguucacccucuaaaucaccacgaucaaaagggacaagcaucaagcacgcagcaaugcagcucaaaacgcuuagccuagccacacccccacgggaaacagcagugauuaaccuuuagcaauaaacgaaaguuuaacuaagcuauacuaaccccaggguuggucaauuucgugccagccaccgcggucacacgauuaacccaagucaauagaagccggcguaaagaguguuuuagaucacccccuccccaauaaagcuaaaacucaccugaguuguaaaaaacuccaguugacacaaaauagacuacgaaaguggcuuuaacauaucugaacacacaauagcuaagacccaaacuggganuagauaccccacuaugcuuagcccuaaaccucaacaguuaaaucaacaaaacugcucgccagaacacuacgagccacagcuuaaaacucaaaggaccuggcggugcuucauaucccucuagaggagccuguucuguaaucgauaaaccccgaucaaccucaccaccucuugcucagccuauauaccgccaucuucagcaaacccugaugaaggcuacaaaguaagcgcaaguacccacguaaagacguuaggucaagguguagcccaugagguggcaagaaaugggcuacauuuucuaccccagaaaacuacgauagcccuuaugaaacuuaagggucgaagguggauuuagcaguaaacugagaguagagugcuuaguugaacagggcccugaagcgcguacacaccgncngucacccuccucaaguauacuucaaaggacauuuaacuaaaaccccuacgcauuuauauagaggagacaagucguaacaugguaaguguacuggnnagugcacuuggacgaacc	..((((..<<<<<<.)))).<<<<<<.<<..<<<<<<<<....<<<.<<<..<......>......<<.......<<<<.<..<<<.....>>>.>..>>>>..<<<<....<<...<<<....>>>..>>......>>>>.<<...>>.>>.<<<....>>>.....>>>>>>.........<<<....<<<<....>>>>..>>>..>>.>>>>>>.....<<<<<<<<.....(((.....((.>>>)).......)))..>>>>>..>>.>>>>>>....<<<((.....<<<<..<<<<...............<<<<<<......<<<.<<<.<<<......>>>..>>>.>>>.............<<....>>.>>>>>>.....>>>>...>>>>....<<<<<<...<<...<<<<.<.....>.>>>>...>>>>>>>>..........<.<<<<<......))..>>>>>.>.>>>.<<.......<<<<....>>>>.....>>..>>>>>><<<<<.<<<<<<<...<<<.<<<<<..<<<<<<<<<<.....<<........>>..........<<<<<<<.......<<.<<<..<<<<<<.......<<..<<<<<.....>>>.......>>..>>.....<<<....>>>.........>>>...>>>>>>>>....>>>>>>>..>>.>>>>>>>>.....<<<<.....>>>>.....<....<<<<<<<.......>>>>>>>....>.....>>>>>.....<<<<<<<.........>>>>>>>.....>>>...>>>>>>>>>>.>>....<..<<.<...<<<<<<..<<<<<......<<<...<<<.....>>>..>>>.......>>>>>.>>>>>>....>.>>...>.....<<<<<<<<<....>>>>>>>>>.........	[.[[[[..(((((..]]]]]((((((.((..((((((((..(.(((.(((..(......)......(((......((((.(..(((.....))).)..))))..((((....((..((((....))).)))......)))).((...))))).(((....))).....)))))))......(.(((...(((((....)))).))))).)).)))))).....((((([[[.....(((.....((.]]])).......)))..)))))..)).))))))....((([[...(.((((...(((...............(((((((.....(((.(((.((........))..))).))).....).....(.((....))))))))).....)))....))))....((((((...((...((((.........))))...))))))))......{...(.(((((......]]..))))).))))).((.......((((....)))).....))...)))))(((((.(((((((...(((.(((((..((((((((((.....((........))..........(((((((.......((.(((...((((((.(....((..(((((.....))).......))..)).....(((....))).....).).)))...)).)))))....)))))))..)).)))))))).(...((((.....)))).....(....(((((((.......)))))))....)..)..))))).....(((((((.........))))))).....)))...)))))))))).))..(.(..((.(...((((((...((((..((..(((....((.....))...)))..).)..))))..))))))....).))...)..)..(((((((((....)))))))))}........	Human mitochondrial ribosome at 2.2 A resolution (bound to partly built tRNAs and mRNA); 12S mitochondrial rRNA
7qi5	AA	954	2.63	RF00177	URS00008F947B_9606	38769321,38769321,37503168		0003735		0005840	9606	auagguuugguccuagccuuucuauuagcucuuaguaagauuacacaugcaagcauccccguuccagugaguucacccucuaaaucaccacgaucaaaagggacaagcaucaagcacgcagcaaugcagcucaaaacgcuuagccuagccacacccccacgggaaacagcagugauuaaccuuuagcaauaaacgaaaguuuaacuaagcuauacuaaccccaggguuggucaauuucgugccagccaccgcggucacacgauuaacccaagucaauagaagccggcguaaagaguguuuuagaucacccccuccccaauaaagcuaaaacucaccugaguuguaaaaaacuccaguugacacaaaauagacuacgaaaguggcuuuaacauaucugaacacacaauagcuaagacccaaacuggganuagauaccccacuaugcuuagcccuaaaccucaacaguuaaaucaacaaaacugcucgccagaacacuacgagccacagcuuaaaacucaaaggaccuggcggugcuucauaucccucuagaggagccuguucuguaaucgauaaaccccgaucaaccucaccaccucuugcucagccuauauaccgccaucuucagcaaacccugaugaaggcuacaaaguaagcgcaaguacccacguaaagacguuaggucaagguguagcccaugagguggcaagaaaugggcuacauuuucuaccccagaaaacuacgauagcccuuaugaaacuuaagggucgaagguggauuuagcaguaaacugagaguagagugcuuaguugaacagggcccugaagcgcguacacaccgncngucacccuccucaaguauacuucaaaggacauuuaacuaaaaccccuacgcauuuauauagaggagacaagucguaacaugguaaguguacuggnnagugcacuuggacgaacc	..((((..<<<<<<.)))).<<<<<<.<<..<<<<<<<<....<<<.<<<..<......>......<<.......<<<<.<..<<<.....>>>.>..>>>>..<<<<....<<...<<<....>>>..>>......>>>>.<<...>>.>>.<<<....>>>.....>>>>>>.........<<<....<<<<....>>>>..>>>..>>.>>>>>>.....<<<<<<<<.....(((.....((.>>>)).......)))..>>>>>..>>.>>>>>>....<<<((.....<<<<..<<<<...............<<<<<<......<<<.<<<.<<<......>>>..>>>.>>>.............<<....>>.>>>>>>.....>>>>...>>>>....<<<<<<...<<...<<<<.<.....>.>>>>...>>>>>>>>..........<.<<<<<......))..>>>>>.>.>>>.<<.......<<<<....>>>>.....>>..>>>>>><<<<<.<<<<<<<...<<<.<<<<<..<<<<<<<<<<.....<<........>>..........<<<<<<<.......<<.<<<..<<<<<<.......<<..<<<<<.....>>>.......>>..>>.....<<<....>>>.........>>>...>>>>>>>>....>>>>>>>..>>.>>>>>>>>.....<<<<.....>>>>.....<....<<<<<<<.......>>>>>>>....>.....>>>>>.....<<<<<<<.........>>>>>>>.....>>>...>>>>>>>>>>.>>....<..<<.<...<<<<<<..<<<<<......<<<...<<<.....>>>..>>>.......>>>>>.>>>>>>....>.>>...>.....<<<<<<<<<....>>>>>>>>>.........	[.[[[[..(((((..]]]]]((((((.((..((((((((..(.(((.(((..(......)......(((......((((.(..(((.....))).)..))))..((((....((..((((....))).)))......)))).((...))))).(((....))).....)))))))......(.(((...(((((....)))).))))).)).)))))).....((((([[[.....(((.....((.]]])).......)))..)))))..)).))))))....((([[...(.((((...(((...............(((((((.....(((.(((.((........))..))).))).....).....(.((....))))))))).....)))....))))....((((((...((...((((.........))))...))))))))......{...(.(((((......]]..))))).))))).((.......((((....)))).....))...)))))(((((.(((((((...(((.(((((..((((((((((.....((........))..........(((((((.......((.(((...((((((.(....((..(((((.....))).......))..)).....(((....))).....).).)))...)).)))))....)))))))..)).)))))))).(...((((.....)))).....(....(((((((.......)))))))....)..)..))))).....(((((((.........))))))).....)))...)))))))))).))..(.(..((.(...((((((...((((..((..(((....((.....))...)))..).)..))))..))))))....).))...)..)..(((((((((....)))))))))}........	Human mitochondrial ribosome in complex with mRNA, A/A-, P/P- and E/E-tRNAs at 2.63 A resolution; 12S mitochondrial rRNA
7qi6	AA	954	2.98	RF00177	URS00008F947B_9606	38769321,38769321,37503168		0003735		0005840	9606	auagguuugguccuagccuuucuauuagcucuuaguaagauuacacaugcaagcauccccguuccagugaguucacccucuaaaucaccacgaucaaaagggacaagcaucaagcacgcagcaaugcagcucaaaacgcuuagccuagccacacccccacgggaaacagcagugauuaaccuuuagcaauaaacgaaaguuuaacuaagcuauacuaaccccaggguuggucaauuucgugccagccaccgcggucacacgauuaacccaagucaauagaagccggcguaaagaguguuuuagaucacccccuccccaauaaagcuaaaacucaccugaguuguaaaaaacuccaguugacacaaaauagacuacgaaaguggcuuuaacauaucugaacacacaauagcuaagacccaaacuggganuagauaccccacuaugcuuagcccuaaaccucaacaguuaaaucaacaaaacugcucgccagaacacuacgagccacagcuuaaaacucaaaggaccuggcggugcuucauaucccucuagaggagccuguucuguaaucgauaaaccccgaucaaccucaccaccucuugcucagccuauauaccgccaucuucagcaaacccugaugaaggcuacaaaguaagcgcaaguacccacguaaagacguuaggucaagguguagcccaugagguggcaagaaaugggcuacauuuucuaccccagaaaacuacgauagcccuuaugaaacuuaagggucgaagguggauuuagcaguaaacugagaguagagugcuuaguugaacagggcccugaagcgcguacacaccgncngucacccuccucaaguauacuucaaaggacauuuaacuaaaaccccuacgcauuuauauagaggagacaagucguaacaugguaaguguacuggnnagugcacuuggacgaacc	..((((..<<<<<<.)))).<<<<<<.<<..<<<<<<<<....<<<.<<<..<......>......<<.......<<<<.<..<<<.....>>>.>..>>>>..<<<<....<<...<<<....>>>..>>......>>>>.<<...>>.>>.<<<....>>>.....>>>>>>.........<<<....<<<<....>>>>..>>>..>>.>>>>>>.....<<<<<<<<.....(((.....((.>>>)).......)))..>>>>>..>>.>>>>>>....<<<((.....<<<<..<<<<...............<<<<<<......<<<.<<<.<<<......>>>..>>>.>>>.............<<....>>.>>>>>>.....>>>>...>>>>....<<<<<<...<<...<<<<.<.....>.>>>>...>>>>>>>>..........<.<<<<<......))..>>>>>.>.>>>.<<.......<<<<....>>>>.....>>..>>>>>><<<<<.<<<<<<<...<<<.<<<<<..<<<<<<<<<<.....<<........>>..........<<<<<<<.......<<.<<<..<<<<<<.......<<..<<<<<.....>>>.......>>..>>.....<<<....>>>.........>>>...>>>>>>>>....>>>>>>>..>>.>>>>>>>>.....<<<<.....>>>>.....<....<<<<<<<.......>>>>>>>....>.....>>>>>.....<<<<<<<.........>>>>>>>.....>>>...>>>>>>>>>>.>>....<..<<.<...<<<<<<..<<<<<......<<<....<<.....>>...>>>.......>>>>>.>>>>>>....>.>>...>.....<<<<<<<<<....>>>>>>>>>.........	[.[[[[..(((((..]]]]]((((((.((..((((((((..(.(((.(((..(......)......(((......((((.(..(((.....))).)..))))..((((....((..((((....))).)))......)))).((...))))).(((....))).....)))))))......(.(((...(((((....)))).))))).)).)))))).....((((([[[.....(((.....((.]]])).......)))..)))))..)).))))))....((([[...(.((((...(((...............(((((((.....(((.(((.((........))..))).))).....).....(.((....))))))))).....)))....))))....((((((...((...((((.........))))...))))))))......{...(.(((((......]]..))))).))))).((.......((((....)))).....))...)))))(((((.(((((((...(((.(((((..((((((((((.....((........))..........(((((((.......((.(((...((((((.(....((..(((((.....))).......))..)).....(((....))).....).).)))...)).)))))....)))))))..)).)))))))).(...((((.....)))).....(....(((((((.......)))))))....)..)..))))).....(((((((.........))))))).....)))...)))))))))).))..(.(..((.(...((((((...((((..(...(((....((.....))...)))....)..))))..))))))....).))...)..)..(((((((((....)))))))))}........	Human mitochondrial ribosome in complex with mRNA, A/P- and P/E-tRNAs at 2.98 A resolution; 12S mitochondrial rRNA
8any	AA	954	2.85	RF00177	URS00008F947B_9606	39134711		0003735		0005840	9606	auagguuugguccuagccuuucuauuagcucuuaguaagauuacacaugcaagcauccccguuccagugaguucacccucuaaaucaccacgaucaaaagggacaagcaucaagcacgcagcaaugcagcucaaaacgcuuagccuagccacacccccacgggaaacagcagugauuaaccuuuagcaauaaacgaaaguuuaacuaagcuauacuaaccccaggguuggucaauuucgugccagccaccgcggucacacgauuaacccaagucaauagaagccggcguaaagaguguuuuagaucacccccuccccaauaaagcuaaaacucaccugaguuguaaaaaacuccaguugacacaaaauagacuacgaaaguggcuuuaacauaucugaacacacaauagcuaagacccaaacuggganuagauaccccacuaugcuuagcccuaaaccucaacaguuaaaucaacaaaacugcucgccagaacacuacgagccacagcuuaaaacucaaaggaccuggcggugcuucauaucccucuagaggagccuguucuguaaucgauaaaccccgaucaaccucaccaccucuugcucagccuauauaccgccaucuucagcaaacccugaugaaggcuacaaaguaagcgcaaguacccacguaaagacguuaggucaagguguagcccaugagguggcaagaaaugggcuacauuuucuaccccagaaaacuacgauagcccuuaugaaacuuaagggucgaagguggauuuagcaguaaacugagaguagagugcuuaguugaacagggcccugaagcgcguacacaccgncngucacccuccucaaguauacuucaaaggacauuuaacuaaaaccccuacgcauuuauauagaggagacaagucguaacaugguaaguguacuggnnagugcacuuggacgaacc	..((((..<<<<<<.)))).<<<<<<.<<..<<<<<<<<..<.<<<.<<<..<......>......<<.......<<<<.<..<<<.....>>>.>..>>>>..<<<<....<<...<<<....>>>..>>......>>>>.<<...>>.>>.<<<....>>>.....>>>>>>>........<<<....<<<<....>>>>..>>>..>>.>>>>>>.....<<<<<<<<.....(((.....((.>>>)).......)))..>>>>>..>>.>>>>>>....<<<((.....<<<<..<<<<...............<<<<<<......<<<.<<<.<<<......>>>..>>>.>>>.............<<....>>.>>>>>>.....>>>>...>>>>....<<<<<<...<<...<<<<.<.....>.>>>>...>>>>>>>>..........<.<<<<<......))..>>>>>.>.>>>.<<.......<<<<....>>>>.....>>..>>>>>><<<<<.<<<<<<<...<<<.<<<<<..<<<<<<<<<<.....<<........>>..........<<<<<<<.......<<.<<<..<<<<<<.......<<..<<<<<.....>>>.......>>..>>.....<<<....>>>.........>>>...>>>>>>>>....>>>>>>>..>>.>>>>>>>>.....<<<<.....>>>>.....<....<<<<<<<.......>>>>>>>....>.....>>>>>.....<<<<<<<.........>>>>>>>.....>>>...>>>>>>>>>>.>>....<..<<.<...<<<<<<..<<<<<......<<<...<<<.....>>>..>>>.......>>>>>.>>>>>>....>.>>...>.....<<<<<<<<<....>>>>>>>>>.........	[.[[[[..(((((..]]]]]((((((.((..((((((((..(.(((.(((..(......)......(((......((((.(..(((.....))).)..))))..((((....((..((((....))).)))......)))).((...))))).(((....))).....)))))))......(.(((...(((((....)))).))))).)).)))))).....((((([[[.....(((.....((.]]])).......)))..)))))..)).))))))....((([[...(.((((...(((...............(((((((.....(((.(((.((........))..))).))).....).....(.((....))))))))).....)))....))))....((((((...((...((((.........))))...))))))))......{...(.(((((......]]..))))).))))).((.......((((....)))).....))...)))))(((((.(((((((...(((.(((((..((((((((((.....((........))..........(((((((.......((.(((...((((((.(....((..(((((.....))).......))..)).....(((....))).....).).)))...)).)))))....)))))))..)).)))))))).(...((((.....)))).....(....(((((((.......)))))))....)..)..))))).....(((((((.........))))))).....)))...)))))))))).))..(.(..((.(...((((((...((((..((..(((....((.....))...)))..).)..))))..))))))....).))...)..)..(((((((((....)))))))))}........	Human mitochondrial ribosome in complex with LRPPRC, SLIRP, A-site, P-site, E-site tRNAs and mRNA; 12S mitochondrial rRNA
8csr	A	853	2.54		URS0001A24B4C_9606	36482135					9606	auagguuugguccuagccuuucuauuagcucuuaguaagauuacacaugcaagcauccccguuccagugaguucacccucuaaaucaccacgaucaaaagggacaagcaucaagcacgcagcaaugcagcucaaaacgcuuagccuagccacacccccacgggaaacagcagugauuaaccuuuagcaauaaacgaaaguuuaacuaagcuauacuaaccccaggguuggucaauuucgugccagccaccgcggucacacgauuaacccaagucaauagaagccggcguaaagaguguuuuagaucacaauaaagcuaaaacucaccugaguuguaaaaaacuccaguugacacaaaauagacuacgaaaguggcuuuaacauaucugaacacacaauagcuaagacccaaacugggauuagauaccccacuaugcuuagcccuaaaccucaacaguuaaaucaacaaaacugcucgccagaacacuacgagccacagcuuaaaacucaaaggaccuggcggugcuucauaucccucuagaggagccuguucuguaaucgauaaaccccgaucaaccucaccaccucuugcucagccuauauaccgccaucuuaacccugaugaaggcuacaaaguacguuaggucaagguguagcccaugagguggcaagaaaugggcuacauuuucuaccccagaaaauuuagcaguaaacugagaggcuuaguugaacagggcccugaagcgcgucgucacccuccucaaguauacuucaaaggacauuuaacuaaaaccccuacgcauuuauauagaggagacaagucguaguaaguguacuggaaagugcacuuggac	..((((..<<<<<<.)))).<<<<<<.<<..<<<<<<<<..<.<<<.<<<..<......>......<<.......<<<<.<..<<<.....>>>.>..>>>>..<<<<....<<...<<<....>>>..>>......>>>>.<<...>>.>>.<<<....>>>.....>>>>>>>........<<<....<<<<....>>>>..>>>..>>.>>>>>>.....<<<<<<<<.....(((.....((.>>>)).......)))..>>>>>..>>.>>>>>>....<<<((.....<<<<..<<<<......<<<<<<......<<<.<<<.<<<......>>>..>>>.>>>.............<<....>>.>>>>>>.....>>>>...>>>>....<<<<<<...<<...<<<<.......[[>>>>...>>>>>>>>..........<.<<<<<......))..>>>>>.>.>>>.<<.......<<<<....>>>>.....>>..>>>>>>.....<<<<<<<<...<<<.<<<<<..<<<<<<<<<<......<<................>>.<<<<<<<.......<<.<<<..<<<<<<<.<...<<<<<.....>>>.......>>..>.>.>>>...>>>>>>>>....>>>>>>>..>>>.>>>>>>>.....<<<<.....>>>>..>>>>>.....<<<<<<<...>>>>>>>.....>>>...>>>>>>>>..<<.....<<<<<<..<<<<<......<<<...<<<.....>>>..>>>.......>>>>>.>>>>>>......>>..]]<<<<<<<<<....>>>>>>>>>....	[.[[[[..(((((..]]]]]((((((.((..((((((((..(.(((.(((..(......)......(((......((((.(..(((.....))).)..))))..((((....((..((((....))).)))......)))).((...))))).(((....))).....)))))))......(.(((...(((((....)))).))))).)).)))))).....((((([[[.....(((.....((.]]])).......)))..)))))..)).))))))....((([[...(.((((...(((......(((((((.....(((.(((.((........))..))).))).....).....(.((....))))))))).....)))....))))....((((((...((...((((........{))))...))))))))......<...(.(((((......]]..))))).))))).((.......((((....)))).....))...))))).....(.(((((....(((.(((.(..((((((((((......((................)).(((((((.......((.(((..(((((((.(...(((((.....))).......))..).).)))...))))))))....)))))))..)))).)))))).....((((.....))))..).))).....((((.((...)).)))).....)))....))))).)..((.....((((((..(((((..((..(((....((.....))...)))..).)..))))).))))))......))..}.(((((((((....)))))))))>...	Human mitochondrial small subunit assembly intermediate (State C); 12S mitochondrial rRNA
8css	A	846	2.36		URS0001A24B4C_9606	36482135					9606	auagguuugguccuagccuuucuauuagcucuuaguaagauuacacaugcaagcauccccguuccagugaguucacccucuaaaucaccacgaucaaaagggacaagcaucaagcacgcagcaaugcagcucaaaacgcuuagccuagccacacccccacgggaaacagcagugauuaaccuuuagcaauaaacgaaaguuuaacuaagcuauacuaaccccaggguuggucaauuucgugccagccaccgcggucacacgauuaacccaagucaauagaagccggcguaaagaguguuuuagaucaccaauaaagcuaaaacucaccugaguuguaaaaaacuccaguugacacaaaauagacuacgaaaguggcuuuaacauaucugaacacacaauagcuaagacccaaacugggauuagauaccccacuaugcuuagcccuaaaccucaacaguuaaaucaacaaaacugcucgccagaacacuacgagccacagcuuaaaacucaaaggaccuggcggugcuucauaucccucuagaggagccuguucuguaaucgauaaaccccgaucaaccucaccaccucuugcucagccuauauaccgccaucuuaacccugaugaaggcuacaaaguacguuaggucaagguguagcccaugagguggcaagaaaugggcuacauuuucuaccccagaaaauuuagcaguaaacugagaggcuuaguugaacagggcccugaagcgcgucacccuccucaaguauacuucaaaggacauuuaacuaaaaccccuacgcauuuauauagaggagacaaguaaguguacuggnnagugcacuuggacg	..((((..<<<<<<.)))).<<<<<<.<<..<<<<<<<<..<.<<<.<<<..<......>......<<.......<<<<.<..<<<.....>>>.>..>>>>..<<<<....<<...<<<....>>>..>>......>>>>.<<...>>.>>.<<<....>>>.....>>>>>>>........<<<....<<<<....>>>>..>>>..>>.>>>>>>.....<<<<<<<<.....(((.....((.>>>)).......)))..>>>>>..>>.>>>>>>....<<<((.....<<<<..<<<<.......<<<<<<......<<<.<<<.<<<......>>>..>>>.>>>.............<<....>>.>>>>>>.....>>>>...>>>>....<<<<<<...<<...<<<<.<.....>.>>>>...>>>>>>>>..........<.<<<<<......))..>>>>>.>.>>>.<<.......<<<<....>>>>.....>>..>>>>>>.....<<<<<<<<...<<<.<<<<<..<<<<<<<<<<......<<................>>.<<<<<<<.......<<.<<<..<<<<<<<.<...<<<<<.....>>>.......>>..>.>.>>>...>>>>>>>>....>>>>>>>..>>>.>>>>>>>.....<<<<.....>>>>..>>>>>.....<<<<<<<...>>>>>>>.....>>>...>>>>>>>>......<<<<<<..<<<<<......<<<...<<<.....>>>..>>>.......>>>>>.>>>>>>......<<<<<<<<<....>>>>>>>>>.....	[.[[[[..(((((..]]]]]((((((.((..((((((((..(.(((.(((..(......)......(((......((((.(..(((.....))).)..))))..((((....((..((((....))).)))......)))).((...))))).(((....))).....)))))))......(.(((...(((((....)))).))))).)).)))))).....((((([[[.....(((.....((.]]])).......)))..)))))..)).))))))....((([[...(.((((...(((.......(((((((.....(((.(((.((........))..))).))).....).....(.((....))))))))).....)))....))))....((((((...((...((((.........))))...))))))))......{...(.(((((......]]..))))).))))).((.......((((....)))).....))...)))))..(..(.(((((....(((.(((((..((((((((((......((................)).(((((((.......((.(((..(((((((.(...(((((.....))).......))..).).)))...))))))))....)))))))..))).))))))).....((((.....))))..))))).....(((((((...))))))).....)))....))))).).)....((((((..(((((..((..(((....((.....))...)))..).)..))))).))))))......(((((((((....)))))))))}....	Human mitochondrial small subunit assembly intermediate (State D); 12S mitochondrial rRNA
8cst	A	888	2.85		URS0001A24B4C_9606	36482135					9606	auagguuugguccuagccuuucuauuagcucuuaguaagauuacacaugcaagcauccccguuccagugaguucacccucuaaaucaccacgaucaaaagggacaagcaucaagcacgcagcaaugcagcucaaaacgcuuagccuagccacacccccacgggaaacagcagugauuaaccuuuagcaauaaacgaaaguuuaacuaagcuauacuaaccccaggguuggucaauuucgugccagccaccgcggucacacgauuaacccaagucaauagaagccggcguaaagaguguuuuagaucaaauaaagcuaaaacucaccugaguuguaaaaaacuccaguugacacaaaauagacuacgaaaguggcuuuaacauaucugaacacacaauagcuaagacccaaacugggauuagauaccccacuaugcuuagcccuaaaccucaacaguuaaaucaacaaaacugcucgccagaacacuacgagccacagcuuaaaacucaaaggaccuggcggugcuucauaucccucuagaggagccuguucuguaaucgauaaaccccgaucaaccucaccaccucuugcucagccuauauaccgccaucuaacccugaugaaggcuacaaaguacguuaggucaagguguagcccaugagguggcaagaaaugggcuacauuuucuaccccagaaaacuacgauagcccuuaugaaacuuaagggucgaagguggauuuagcaguaaacugagaguagagugcuuaguugaacagggcccugaagcgcgucacccuccucaaguauacuucaaaggacauuuaacuaaaaccccuacgcauuuauauagaggagacaaguaaguguacuggnnagugcacuuggacg	..((((..<<<<<<.)))).<<<<<<.<<..<<<<<<<<....<<<.<<<..<......>......<<.......<<<<.<..<<<.....>>>.>..>>>>..<<<<....<<...<<<....>>>..>>......>>>>.<<...>>.>>.<<<....>>>.....>>>>>>.........<<<....<<<<....>>>>..>>>..>>.>>>>>>.....<<<<<<<<.....(((.....((.>>>)).......)))..>>>>>..>>.>>>>>>....<<<((.....<<<<..<<<<.....<<<<<<......<<<.<<<.<<<......>>>..>>>.>>>.............<<....>>.>>>>>>.....>>>>...>>>>....<<<<<<...<<...<<<<.........>>>>...>>>>>>>>..........<.<<<<<......))..>>>>>.>.>>>.<<.......<<<<....>>>>.....>>..>>>>>>......<<<<<<<...<<<.<<<<<..<<<<<<<<.......<<........>>..........<<<<<<<.......<<.<<<..<<.<<<<.<..<<<<<.....>>>.......>>..>.>.>>>....>>>>>>>....>>>>>>>.....>>>>>>>>.....<<<<.....>>>>.....<....<<<<<<<.......>>>>>>>....>.....>>>>>.....<<<<<<<.........>>>>>>>.....>>>...>>>>>>>.......<<<<<<..<<<<<......<<<....<<.....>>...>>>.......>>>>>.>>>>>>......<<<<<<<<<....>>>>>>>>>.....	[.[[[[..(((((..]]]]]((((((.((..((((((((..(.(((.(((..(......)......(((......((((.(..(((.....))).)..))))..((((....((..((((....))).)))......)))).((...))))).(((....))).....)))))))......(.(((...(((((....)))).))))).)).)))))).....((((([[[.....(((.....((.]]])).......)))..)))))..)).))))))....((([[...(.((((...(((.....(((((((.....(((.(((.((........))..))).))).....).....(.((....))))))))).....)))....))))....((((((...((...((((.........))))...))))))))......{...(.(((((......]]..))))).))))).((.......((((....)))).....))...)))))..(..(.(((((.....((.(((((..((((((((.(.....((........))..........(((((.(.......((.(((..(((((((.(..(((((.....))).......))..).).)))...))))))))....).)))))...).)))))))).(...((((.....)))).....(....(((((((.......)))))))....)..)..))))).....(((((((.........))))))).....)).....))))).).)....((((((..(((((..((..(((....((.....))...)))..).)..))))).))))))......(((((((((....)))))))))}....	Human mitochondrial small subunit assembly intermediate (State E); 12S mitochondrial rRNA
8csu	A	881	3.03		URS0001A24B4C_9606	36482135					9606	auagguuugguccuagccuuucuauuagcucuuaguaagauuacacaugcaagcauccccguuccagugaguucacccucuaaaucaccacgaucaaaagggacaagcaucaagcacgcagcaaugcagcucaaaacgcuuagccuagccacacccccacgggaaacagcagugauuaaccuuuagcaauaaacgaaaguuuaacuaagcuauacuaaccccaggguuggucaauuucgugccagccaccgcggucacacgauuaacccaagucaauagaagccggcguaaagaguguuuuagaucaaauaaagcuaaaacucaccugaguuguaaaaaacuccaguugacacaaaauagacuacgaaaguggcuuuaacauaucugaacacacaauagcuaagacccaaacugggauuagauaccccacuaugcuuagcccuaaaccucaacaguuaaaucaacaaaacugcucgccagaacacuacgagccacagcuuaaaacucaaaggaccuggcggugcuucauaucccucuagaggagccuguucuguaaucgaucaccaccucuugcucagccuauauaccgccaucuuaacccugaugaaggcuacaaaguacguuaggucaagguguagcccaugagguggcaagaaaugggcuacauuuucuaccccagaaaacuacgauagcccuuaugaaacuuaagggucgaagguggauuuagcaguaaacugagaguagagugcuuaguugaacagggcccugaagcgcgucgucacccuccucaaguauacuucaaaggacauuuaacuaaaaccccuacgcauuuauauagaggagacaagucguaguaaguguacuggaaagugcacuuggac	..((((..<<<<<<.)))).<<<<<<.<<..<<<<<<<<..<.<<<.<<<..<......>......<<.......<<<<.<..<<<.....>>>.>..>>>>..<<<<....<<...<<<....>>>..>>......>>>>.<<...>>.>>.<<<....>>>.....>>>>>>>........<<<....<<<<....>>>>..>>>..>>.>>>>>>.....<<<<<<<<.....(((.....((.>>>)).......)))..>>>>>..>>.>>>>>>....<<<((.....<<<<..<<<<.....<<<<<<......<<<.<<<.<<<......>>>..>>>.>>>.............<<....>>.>>>>>>.....>>>>...>>>>....<<<<<<...<<...<<<<.......[[>>>>...>>>>>>>>..........<.<<<<<......))..>>>>>.>.>>>.<<.......<<<<....>>>>.....>>..>>>>>>.....<<<<<<<<...<<<.<<<<...<<<<<<<<<<......<..>.<<<<<<<.......<<.<<<..<<<<<<<.<...<<<<<.....>>>.......>>..>.>.>>>...>>>>>>>>....>>>>>>>..>>>.>>>>>>>.....<<<<.....>>>>.....<....<<<<<<<.......>>>>>>>....>......>>>>.....<<<<<<<.........>>>>>>>.....>>>...>>>>>>>>..<<.....<<<<<<..<<<<<..<....<....<<<.....>>>...>.....>..>>>>>.>>>>>>......>>..]]<<<<<<<<<....>>>>>>>>>....	[.[[[[..(((((..]]]]]((((((.((..((((((((..(.(((.(((..(......)......(((......((((.(..(((.....))).)..))))..((((....((..((((....))).)))......)))).((...))))).(((....))).....)))))))......(.(((...(((((....)))).))))).)).)))))).....((((([[[.....(((.....((.]]])).......)))..)))))..)).))))))....((([[...(.((((...(((.....(((((((.....(((.(((.((........))..))).))).....).....(.((....))))))))).....)))....))))....((((((...((...((((........{))))...))))))))......<...(.(((((......]]..))))).))))).((.......((((....)))).....))...))))).....(.(((.......((..((.....((((.((((......(..).(((((((.......((.(((..(((((((.(...(((((.....))).......))..).).)))...))))))))....)))))))..))).).))))..(...((((.....)))).....(....(((((((.......)))))))....)..)....))......(((((((.........))))))).....)).......))).)..((.....((((((..(((((..((........(((.....))).......).)..))))).))))))......))..}.(((((((((....)))))))))>...	Human mitochondrial small subunit assembly intermediate (State C*); 12S mitochondrial rRNA
8gxb	A	61	2.15		URS0002681379_1306	36610789					1306	ngagcguuacguccgaaagucgcauugcacuccgcgacacggcucuuuaaaaacaaaagga	<<<<<..<...(((....<<<<<..........>>>>>..>>>>>>............)))	((((((.....[[[....(((((..........))))).).)))))............]]]	Crystal structure of NAD+ -II riboswitch in complex with NAD+; NAD+ II riboswitch
8gxb	B	61	2.15		URS0002681379_1306	36610789					1306	ngagcguuacguccgaaagucgcauugcacuccgcgacacggcucuuuaaaaacaaaagga	<<<<<......(((....<<<<<..........>>>>>...>>>>>............)))	((((((.....[[[....(((((..........))))).).)))))............]]]	Crystal structure of NAD+ -II riboswitch in complex with NAD+; NAD+ II riboswitch
8hba	A	48	2.64		URS00026813CB_1318	36840714					1318	gcggcguugcguccgaaagugacacggccgcuuaaaaacaaaaggaga	<<<<<..<...(((....<<.>>..>>>>>>............)))..	((((((...[.[[[....((.)).).)))))............]]]].	Crystal structure of NAD-II riboswitch (single strand) with NAD; RNA (55-MER)
8hba	B	50	2.64		URS00026813CB_1318	36840714					1318	cgcggcguugcguccgaaagucgacacggccgcuuaaaaacaaaaggaga	.<<<<<..<...(((....<<..>>..>>>>>>............)))..	.((((((...[.[[[....((())).).)))))............]]]].	Crystal structure of NAD-II riboswitch (single strand) with NAD; RNA (55-MER)
8qrk	A	955	6.69	RF00177	URS0001A24B4C_9606	38969660		0003735		0005840	9606	aauagguuugguccuagccuuucuauuagcucuuaguaagauuacacaugcaagcauccccguuccagugaguucacccucuaaaucaccacgaucaaaagggacaagcaucaagcacgcagcaaugcagcucaaaacgcuuagccuagccacacccccacgggaaacagcagugauuaaccuuuagcaauaaacgaaaguuuaacuaagcuauacuaaccccaggguuggucaauuucgugccagccaccgcggucacacgauuaacccaagucaauagaagccggcguaaagaguguuuuagaucacccccuccccaauaaagcuaaaacucaccugaguuguaaaaaacuccaguugacacaaaauagacuacgaaaguggcuuuaacauaucugaacacacaauagcuaagacccaaacuggganuagauaccccacuaugcuuagcccuaaaccucaacaguuaaaucaacaaaacugcucgccagaacacuacgagccacagcuuaaaacucaaaggaccuggcggugcuucauaucccucuagaggagccuguucuguaaucgauaaaccccgaucaaccucaccaccucuugcucagccuauauaccgccaucuucagcaaacccugaugaaggcuacaaaguaagcgcaaguacccacguaaagacguuaggucaagguguagcccaugagguggcaagaaaugggcuacauuuucuaccccagaaaacuacgauagcccuuaugaaacuuaagggucgaagguggauuuagcaguaaacugagaguagagugcuuaguugaacagggcccugaagcgcguacacaccgncngucacccuccucaaguauacuucaaaggacauuuaacuaaaaccccuacgcauuuauauagaggagacaagucguaacaugguaaguguacuggnnagugcacuuggacgaacc	...((((..<<<<<<.)))).<<<<<<.<...<<<<<<<<..<.<<<.<<<..<......>......<<.......<<<<.<..<<.......>>.>..>>>>..<<<<....<<...<<<....>>>..>>......>>>>.<<...>>.>>.<<......>>.....>>>>>>>........<<<....<<<<....>>>>..>>>..>>.>>>>>>.....<<<<<<<<.....(((.....((.>>>)).......)))..>>>>>...>.>>>>>>....<<<((.....<<<<..<<<<...............<<<<<<......<<<.<<<.<<<......>>>..>>>.>>>.............<<....>>.>>>>>>.....>>>>...>>>>....<<<<<<...<<...<<<<.<.....>.>>>>...>>>>>>>>..........<.<<<<<......))..>>>>>.>.>>>.<<.......<<<<....>>>>.....>>..>>>>>><<<<<.<<<<<<<...<<<.<<<<<..<<<<<<<<<<.....<<........>>..........<<<<<<<.......<<.<<<..<<<<<<.......<<..<<<<<.....>>>.......>>..>>.....<<<....>>>.........>>>...>>>>>>>>....>>>>>>>..>>.>>>>>>>>.....<<<<.....>>>>.....<....<<<<<<<.......>>>>>>>....>.....>>>>>.....<<<<<<<.........>>>>>>>.....>>>...>>>>>>>>>>.>>....<..<<.<...<<<<<<..<<<<<......<<<...<<<.....>>>..>>>.......>>>>>.>>>>>>....>.>>...>.....<<<<<<<<<....>>>>>>>>>.........	.[.[[[[..(((((..]]]]]((((((.((..((((((((..(.(((.(((..(......)......(((......((((.(..(((.....))).)..))))..((((....((..((((....))).)))......)))).((...))))).(((....))).....)))))))......(.(((...(((((....)))).))))).)).)))))).....((((([[[.....(((.....((.]]])).......)))..)))))..)).))))))....((([[...(.((((...(((...............(((((((.....(((.(((.((........))..))).))).....).....(.((....))))))))).....)))....))))....((((((...((...((((.........))))...))))))))......{...(.(((((......]]..))))).))))).((.......((((....)))).....))...)))))(((((.(((((((...(((.(((((..((((((((((.....((........))..........(((((((.......((.(((...((((((.(....((..(((((.....))).......))..)).....(((....))).....).).)))...)).)))))....)))))))..)).)))))))).(...((((.....)))).....(....(((((((.......)))))))....)..)..))))).....(((((((.........))))))).....)))...)))))))))).))..(.(..((.(...((((((..(((((..((..(((....((.....))...)))..).)..))))).))))))....).))...)..)..(((((((((....)))))))))}........	mt-SSU assembly intermediate in GTPBP8 knock-out cells, state 1; 12S mitochondrial rRNA
8qrl	A	951	3.34	RF00177	URS0001A24B4C_9606	38969660		0003735		0005840	9606	aauagguuugguccuagccuuucuauuagcucuuaguaagauuacacaugcaagcauccccguuccagugaguucacccucuaaaucaccacgaucaaaagggacaagcaucaagcacgcagcaaugcagcucaaaacgcuuagccuagccacacccccacgggaaacagcagugauuaaccuuuagcaauaaacgaaaguuuaacuaagcuauacuaaccccaggguuggucaauuucgugccagccaccgcggucacacgauuaacccaagucaauagaagccggcguaaagaguguuuuagaucacccccuccccaauaaagcuaaaacucaccugaguuguaaaaaacuccaguugacacaaaauagacuacgaaaguggcuuuaacauaucugaacacacaauagcuaagacccaaacuggganuagauaccccacuaugcuuagcccuaaaccucaacaguuaaaucaacaaaacugcucgccagaacacuacgagccacagcuuaaaacucaaaggaccuggcggugcuucauaucccucuagaggagccuguucuguaaucgauaaaccccgaucaaccucaccaccucuugcucagccuauauaccgccaucuucagcaaacccugaugaaggcuacaaaguaagcgcaaguacccacguaaagacguuaggucaagguguagcccaugagguggcaagaaaugggcuacauuuucuaccccagaaaacuacgauagcccuuaugaaacuuaagggucgaagguggauuuagcaguaaacugagaguagagugcuuaguugaacagggcccugaagcgcguacacaccgncngucacccuccucaaguauacuucaaaggacauuuaacuaaaaccccuacgcauuuauauagaggagacaagucguaacaugguaaguguacuggnnagugcacuuggacg	...((((..<<<<<<.)))).<<<<<<.<<..<<<<<<<<....<<<.<<<..<......>......<<.......<<<<.<..<<<.....>>>.>..>>>>..<<<<....<<...<<<....>>>..>>......>>>>.<<...>>.>>.<<<....>>>.....>>>>>>.........<<<....<<<<....>>>>..>>>..>>.>>>>>>.....<<<<<<<<.....(((.....((.>>>)).......)))..>>>>>..>>.>>>>>>....<<<((.....<<<<..<<<<...............<<<<<<......<<<.<<<.<<<......>>>..>>>.>>>.............<<....>>.>>>>>>.....>>>>...>>>>....<<<<<<...<<...<<<<.<.....>.>>>>...>>>>>>>>..........<.<<<<<......))..>>>>>.>.>>>.<<.......<<<<....>>>>.....>>..>>>>>><<<<<.<<<<<<<...<<<.<<<<<..<<<<<<<<<<.....<<........>>..........<<<<<<<.......<<.<<<..<<<<<<.......<<..<<<<<.....>>>.......>>..>>.....<<<....>>>.........>>>...>>>>>>>>....>>>>>>>..>>.>>>>>>>>.....<<<<.....>>>>.....<....<<<<<<<.......>>>>>>>....>.....>>>>>.....<<<<<<<.........>>>>>>>.....>>>...>>>>>>>>>>.>>....<..<<.<...<<<<<<..<<<<<......<<<....<<.....>>...>>>.......>>>>>.>>>>>>....>.>>...>.....<<<<<<<<<....>>>>>>>>>.....	.[.[[[[..(((((..]]]]]((((((.((..((((((((..(.(((.(((..(......)......(((......((((.(..(((.....))).)..))))..((((....((..((((....))).)))......)))).((...))))).(((....))).....)))))))......(.(((...(((((....)))).))))).)).)))))).....((((([[[.....(((.....((.]]])).......)))..)))))..)).))))))....((([[...(.((((...(((...............(((((((.....(((.(((.((........))..))).))).....).....(.((....))))))))).....)))....))))....((((((...((...((((.........))))...))))))))......{...(.(((((......]]..))))).))))).((.......((((....)))).....))...)))))(((((.(((((((...(((.(((((..((((((((((.....((........))..........(((((((.......((.(((...((((((.(....((..(((((.....))).......))..)).....(((....))).....).).)))...)).)))))....)))))))..)).)))))))).(...((((.....)))).....(....(((((((.......)))))))....)..)..))))).....(((((((.........))))))).....)))...)))))))))).))..(.(..((.(...((((((..(((((..(...(((....((.....))...)))....)..))))).))))))....).))...)..)..(((((((((....)))))))))}....	mt-SSU assembly intermediate in GTPBP8 knock-out cells, state 2; 12S mitochondrial rRNA
8qrm	A	955	3.05	RF00177	URS0001A24B4C_9606	38969660		0003735		0005840	9606	aauagguuugguccuagccuuucuauuagcucuuaguaagauuacacaugcaagcauccccguuccagugaguucacccucuaaaucaccacgaucaaaagggacaagcaucaagcacgcagcaaugcagcucaaaacgcuuagccuagccacacccccacgggaaacagcagugauuaaccuuuagcaauaaacgaaaguuuaacuaagcuauacuaaccccaggguuggucaauuucgugccagccaccgcggucacacgauuaacccaagucaauagaagccggcguaaagaguguuuuagaucacccccuccccaauaaagcuaaaacucaccugaguuguaaaaaacuccaguugacacaaaauagacuacgaaaguggcuuuaacauaucugaacacacaauagcuaagacccaaacuggganuagauaccccacuaugcuuagcccuaaaccucaacaguuaaaucaacaaaacugcucgccagaacacuacgagccacagcuuaaaacucaaaggaccuggcggugcuucauaucccucuagaggagccuguucuguaaucgauaaaccccgaucaaccucaccaccucuugcucagccuauauaccgccaucuucagcaaacccugaugaaggcuacaaaguaagcgcaaguacccacguaaagacguuaggucaagguguagcccaugagguggcaagaaaugggcuacauuuucuaccccagaaaacuacgauagcccuuaugaaacuuaagggucgaagguggauuuagcaguaaacugagaguagagugcuuaguugaacagggcccugaagcgcguacacaccgncngucacccuccucaaguauacuucaaaggacauuuaacuaaaaccccuacgcauuuauauagaggagacaagucguaacaugguaaguguacuggnnagugcacuuggacgaacc	...((((..<<<<<<.)))).<<<<<<.<...<<<<<<<<..<.<<<.<<<..<......>......<<.......<<<<.<..<<.......>>.>..>>>>..<<<<....<<...<<<....>>>..>>......>>>>.<<...>>.>>.<<......>>.....>>>>>>>........<<<....<<<<....>>>>..>>>..>>.>>>>>>.....<<<<<<<<.....(((.....((.>>>)).......)))..>>>>>...>.>>>>>>....<<<((.....<<<<..<<<<...............<<<<<<......<<<.<<<.<<<......>>>..>>>.>>>.............<<....>>.>>>>>>.....>>>>...>>>>....<<<<<<...<<...<<<<.<.....>.>>>>...>>>>>>>>..........<.<<<<<......))..>>>>>.>.>>>.<<.......<<<<....>>>>.....>>..>>>>>><<<<<.<<<<<<....<<<.<<<<<..<<<<<<<<<<.....<<........>>..........<<<<<<<.......<<.<<<..<<<<<<.......<<..<<<<<.....>>>.......>>..>>.....<<<....>>>.........>>>...>>>>>>>>....>>>>>>>..>>.>>>>>>>>.....<<<<.....>>>>.....<....<<<<<<<.......>>>>>>>....>.....>>>>>.....<<<<<<<.........>>>>>>>.....>>>....>>>>>>>>>.>>....<..<<.<...<<<<<<..<<<<<......<<<...<<<.....>>>..>>>.......>>>>>.>>>>>>....>.>>...>.....<<<<<<<<<....>>>>>>>>>.........	.[.[[[[..(((((..]]]]]((((((.((..((((((((..(.(((.(((..(......)......(((......((((.(..(((.....))).)..))))..((((....((..((((....))).)))......)))).((...))))).(((....))).....)))))))......(.(((...(((((....)))).))))).)).)))))).....((((([[[.....(((.....((.]]])).......)))..)))))..)).))))))....((([[...(.((((...(((...............(((((((.....(((.(((.((........))..))).))).....).....(.((....))))))))).....)))....))))....((((((...((...((((.........))))...))))))))......{...(.(((((......]]..))))).))))).((.......((((....)))).....))...)))))(((((.((((((....(((.(((((..((((((((((.....((........))..........(((((((.......((.(((...((((((.(....((..(((((.....))).......))..)).....(((....))).....).).)))...)).)))))....)))))))..)).)))))))).(...((((.....)))).....(....(((((((.......)))))))....)..)..))))).....(((((((.........))))))).....)))....))))))))).))..(.(..((.(...((((((..(((((..((..(((....((.....))...)))..).)..))))).))))))....).))...)..)..(((((((((....)))))))))}........	mt-SSU assembly intermediate in GTPBP8 knock-out cells, state 3; 12S mitochondrial rRNA
8qrn	A	955	2.98	RF00177	URS0001A24B4C_9606	38969660		0003735		0005840	9606	aauagguuugguccuagccuuucuauuagcucuuaguaagauuacacaugcaagcauccccguuccagugaguucacccucuaaaucaccacgaucaaaagggacaagcaucaagcacgcagcaaugcagcucaaaacgcuuagccuagccacacccccacgggaaacagcagugauuaaccuuuagcaauaaacgaaaguuuaacuaagcuauacuaaccccaggguuggucaauuucgugccagccaccgcggucacacgauuaacccaagucaauagaagccggcguaaagaguguuuuagaucacccccuccccaauaaagcuaaaacucaccugaguuguaaaaaacuccaguugacacaaaauagacuacgaaaguggcuuuaacauaucugaacacacaauagcuaagacccaaacuggganuagauaccccacuaugcuuagcccuaaaccucaacaguuaaaucaacaaaacugcucgccagaacacuacgagccacagcuuaaaacucaaaggaccuggcggugcuucauaucccucuagaggagccuguucuguaaucgauaaaccccgaucaaccucaccaccucuugcucagccuauauaccgccaucuucagcaaacccugaugaaggcuacaaaguaagcgcaaguacccacguaaagacguuaggucaagguguagcccaugagguggcaagaaaugggcuacauuuucuaccccagaaaacuacgauagcccuuaugaaacuuaagggucgaagguggauuuagcaguaaacugagaguagagugcuuaguugaacagggcccugaagcgcguacacaccgncngucacccuccucaaguauacuucaaaggacauuuaacuaaaaccccuacgcauuuauauagaggagacaagucguaacaugguaaguguacuggnnagugcacuuggacgaacc	...((((..<<<<<<.)))).<<<<<<.<...<<<<<<<<..<.<<<.<<<..<......>......<<.......<<<<.<..<<.......>>.>..>>>>..<<<<....<<...<<<....>>>..>>......>>>>.<<...>>.>>.<<......>>.....>>>>>>>........<<<....<<<<....>>>>..>>>..>>.>>>>>>.....<<<<<<<<.....(((.....((.>>>)).......)))..>>>>>...>.>>>>>>....<<<((.....<<<<..<<<<...............<<<<<<......<<<.<<<.<<<......>>>..>>>.>>>.............<<....>>.>>>>>>.....>>>>...>>>>....<<<<<<...<<...<<<<.<.....>.>>>>...>>>>>>>>..........<.<<<<<......))..>>>>>.>.>>>.<<.......<<<<....>>>>.....>>..>>>>>><<<<<.<<<<<<<...<<<.<<<<<..<<<<<<<<<<.....<<........>>..........<<<<<<<.......<<.<<<..<<<<<<.......<<..<<<<<.....>>>.......>>..>>.....<<<....>>>.........>>>...>>>>>>>>....>>>>>>>..>>.>>>>>>>>.....<<<<.....>>>>.....<....<<<<<<<.......>>>>>>>....>.....>>>>>.....<<<<<<<.........>>>>>>>.....>>>...>>>>>>>>>>.>>....<..<<.<...<<<<<<..<<<<<......<<<...<<<.....>>>..>>>.......>>>>>.>>>>>>....>.>>...>.....<<<<<<<<<....>>>>>>>>>.........	.[.[[[[..(((((..]]]]]((((((.((..((((((((..(.(((.(((..(......)......(((......((((.(..(((.....))).)..))))..((((....((..((((....))).)))......)))).((...))))).(((....))).....)))))))......(.(((...(((((....)))).))))).)).)))))).....((((([[[.....(((.....((.]]])).......)))..)))))..)).))))))....((([[...(.((((...(((...............(((((((.....(((.(((.((........))..))).))).....).....(.((....))))))))).....)))....))))....((((((...((...((((.........))))...))))))))......{...(.(((((......]]..))))).))))).((.......((((....)))).....))...)))))(((((.((((((.....((.(((((..((((((((((.....((........))..........(((((((.......((.(((...((((((.(....((..(((((.....))).......))..)).....(((....))).....).).)))...)).)))))....)))))))..)).)))))))).(...((((.....)))).....(....(((((((.......)))))))....)..)..))))).....(((((((.........))))))).....)).....))))))))).))..(.(..((.(...((((((..(((((..((..(((....((.....))...)))..).)..))))).))))))....).))...)..)..(((((((((....)))))))))}........	mt-SSU in GTPBP8 knock-out cells, state 4; 12S mitochondrial rRNA