4e8n	A	393	2.96	RF02001,RF01998	URS000080DE44_182710	23101623			0000373		182710	ggggugugcccggcaugggugcagucuauagggugagagucccgaacugugaaggcagaaguaacaguuagccuaacgcaaggguguccguggcgacauggaaucugaaggaagcggacggcaaaccuucggucugaggaacacgaacuucauaugaggcuagguaucaauggaugaguuugcauaacaaaacaaaguccuuucugccaaaguugguacagaguaaaugaagcagauugaugaagggaaagacugcauucuuacccggggaggucuggaaacagaagucagcagaagucauaguacccuguucgcaggggaaggacggaacaaguauggcguucgcgccuaagcuugaaccgccguauaccgaacgguacguacgguggugug	{.......<<<<<...<<<<<<<<<<<...<<<.......>>>..(((((...<<<<<<<...)))))..<<<...<<<..<<<<.<<<<<<....>>>>>>>>>>.......>>>...>>>...[[[[[[[[[[[...........[[[[[......[[[...(((((((<<<...<<<<......}.>>>>....>>>.>>>>>>>...)))))))...]]]...]]]]]]]]]]...]]]]]]...>>>>>>>>>>>....>>>>>....<<<<....>>>>...........<<<......<<<<......>>>>....>>>....<<<<<..<<<<....>>>>...>>>>>.<<<<<<<<<<<<<....>>>..>>>>>>>>>>...	{....[<.((((({..(((((((((((...(((.......)))..(((((...[[[[[[[...)))))..(((...(((..((((.((((((....))))))))))...>}..)))...)))...(((((((((((.(.....)...(((((.....[(((....(.((((((((..((((.]....}.))))...)))).]]]]]]]...)))).)....)))...))))))))))...))))))...)))))))))))...])))))(...((((....))))...).......(((.(....(((........)))...))))....(((((.(((((....))))..)))))).(((((((((((((....)))..))))))))))...	Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of NH4+ and Mg2+; Group IIC intron
4jrd	A	11	1.0		URS000080E35F_32630	23813654					32630	aaaaaaaaaaa	...........	...........	Crystal structure of the parallel double-stranded helix of poly(A) RNA; RNA (5'-R(*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3')
4jrd	B	11	1.0		URS000080E35F_32630	23813654					32630	aaaaaaaaaaa	...........	...........	Crystal structure of the parallel double-stranded helix of poly(A) RNA; RNA (5'-R(*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3')
5j02	A	414	3.493	RF02001,RF01998	URS0000B21DD4_182710	27934709			0000373		182710	gugugcccggcaugggugcagucuauagggugagagucccgaacugugaaggcagaaguaacaguuagccuaacgcaacugcgccguggcgacauggcgugggaaggaagcggacggcaaaccuucggucugaggaacacgaacuucauaugaggcuagguaucaauggaugaguuugcauaacaaaacaaaguccuuucugccaaaguugguacagaguaaaugaagcagauugaugaagggaaagacugcauucuuacccggggaggucuggaaacagaagucagcagaagucauaguacccuguucgcaggggaaggacggaacaaguauggcguucgcgccuaagcuugaaccgccguauaccgaacgguacguacggugguguggcaggggcgcgcccccuaugccgau	.....<<<<<...<<<<<<<<<<<...<<<.......>>>..<<<<<...(((((((...>>>>>..<<<...<<<..<<<<<<<<<<....>>>>>>>>>>.......>>>...>>>...<<<<<<<<<<<...........<<<<<......<<<..<<<<<<<<<<<<..<<<<........>>>>...>>>>.)))))))...>>>>>>>>..>>>...>>>>>>>>>>...>>>>>>...>>>>>>>>>>>....>>>>>....<<<<....>>>>...........<<<......<<<<<....>>>>>....>>>....<<<<<..<<<<<..>>>>>...>>>>>.<<<<<<<<<<<<<....>>>..>>>>>>>>>>..<<<<<<<<.<..>>>>>>..>>>...	..[<.((((({..(.(((((((((...(((.......)))..(((((...[[[[[[[...)))))..(((...(((..((((((((((....))))))))))...>}..)))...)))...(((((((((((.(.....)...(((((.....[(((..((((((((((((..((((.]......))))...)))).]]]]]]]...))))))))..)))...))))))))))...))))))...))))))))).)...])))))(...((((....))))...)(......(((.(....(((((....)))))...))))....(((((.(((((....))))..)))))).(((((((((((((....)))..))))))))))..((((((((.(()))))))..)))..)	Structure of the lariat form of a chimeric derivative of the Oceanobacillus iheyensis group II intron in the presence of NH4+, MG2+ and an inactive 5' exon.; GROUP II INTRON LARIAT
5neo	A	18	1.69		URS0000BC4678_33072	28529131					33072	gguggggacgaccccanc	<<<<<<<....>>>>>>>	(((((((....)))))))	The structure of the G. violaceus guanidine II riboswitch P1 stem-loop; RNA (5'-R(*GP*GP*UP*GP*GP*GP*GP*AP*CP*GP*AP*CP*CP*CP*CP*AP*(CBV)P*C)-3')
5vxq	A	11	1.002			28973475					32630	aaaaaaaaaaa	...........	...........	X-Ray crystallography structure of the parallel stranded duplex formed by 5-rA5-dA-rA5; DNA/RNA (5'-R(*AP*AP*AP*AP*A)-D(P*A)-R(P*AP*AP*AP*AP*A)-3')
5vxq	B	11	1.002			28973475					32630	aaaaaaaaaaa	...........	...........	X-Ray crystallography structure of the parallel stranded duplex formed by 5-rA5-dA-rA5; DNA/RNA (5'-R(*AP*AP*AP*AP*A)-D(P*A)-R(P*AP*AP*AP*AP*A)-3')
7uim	B	541	3.1	RF00029	URS0002617790_39491	36356138			0000373		39491	guuugcgcgccaugggcgcgcucuaacggguguaagucccgaacaugcccagguagugggaaauguauagccgaacagcaagggugucuacugugagguggaaucugaaggaagcuguaagcgaaucucugguccgacggacagaaaucgcauauaaggcuaggcuucggugauaagcuggcaaagaacagugaagucuaauaacugaagcagaguaaaugcggcggauauauggagagaaagagcgugcaccuuaagcguggaggucucacagagguuagccuaguaacaacgaacugugagaagucagccgagcccauaguagugaagaagucucuguaauggggauggagcgaaggggcgaacaaucauaaugucucguauugcagaaaugacaacaucugccguaaccaaucggguaaaagguggucaaaucaagcgagacggaaaggaguugauugaaccgccguauacggaaccguacguacgguggugugagaggucggaauuucucaauuaagagaaauucuuccuacucgau	.....<<<<<...<<<<<<<<<<<..<<<<.......>>>>.<<<<.<<<.....((>>>..>>>>...<<....<<<<..<<<<.<<<<<<....>>>>>>>>>>.......>>>>...>>...<<<<<.<<<<<...........<<<<<......<<<..<<<<<...<<<..<<<<........>>>>...>>>.....)).>>>>>..>>>...>>>>>>>>>>....>>>>>...>>>>>>>>>.>>....>>>>>..<.<<<<<<<<<<<<..>>>>.<......>...>>>>>>>>..>....<..<<<<......<<......<<<<<<.....>>>>>>...>>....>>>>>..<<<<<<.......<<<<.<<<<.<<..<<<<..<<<<<.<<<........>>>.....>>>>>>>>>..>>..>>>.>>>>>.......>.>>>>>.<<<<<<<<<<<<<....>>>..>>>>>>>>>>..<<<<<<..<<<<<<<<<<......>>>>>>>>>>.>>>.>>>...	..[<.((((({..((((.((((((..((((.......)))).((((.(((.....[[)))..))))...((....((((..((((.((((((....))))))))))...>}..))))...))...(((((((((((.(.....)...(((((......(((..(((((...((...((((........))))....)).....]].)))))..)))...))))))))))...))))))...)))))).)).))...])))))(...((((..(((((....))).((....))...))..))))...)(.....((((.(....((......(((((.......)))))...))...)))))...((((.(.......((((.((((.....((((..(((((.(((........))).....)))))))))......)))).))))........).)))).(((((((((((((....)))..))))))))))..((((((..((((((((((......)))))))))).))).)))..)	CryoEM Structure of an Group II Intron Retroelement (apo-complex); E.r IIC Intron
7uin	B	541	2.8	RF00029	URS0002617790_39491	36356138			0000373		39491	guuugcgcgccaugggcgcgcucuaacggguguaagucccgaacaugcccagguagugggaaauguauagccgaacagcaagggugucuacugugagguggaaucugaaggaagcuguaagcgaaucucugguccgacggacagaaaucgcauauaaggcuaggcuucggugauaagcuggcaaagaacagugaagucuaauaacugaagcagaguaaaugcggcggauauauggagagaaagagcgugcaccuuaagcguggaggucucacagagguuagccuaguaacaacgaacugugagaagucagccgagcccauaguagugaagaagucucuguaauggggauggagcgaaggggcgaacaaucauaaugucucguauugcagaaaugacaacaucugccguaaccaaucggguaaaagguggucaaaucaagcgagacggaaaggaguugauugaaccgccguauacggaaccguacguacgguggugugagaggucggaauuucucaauuaagagaaauucuuccuacucgau	.....<<<<<...<<<<<<<<<<<..<<<<.......>>>>.<<<<.<<<....(((>>>..>>>>...<<....<<<<..<<<<.<<<<<<....>>>>>>>>>>.......>>>>...>>...<<<<<<<<<<<...........<<<<<......<<<..<<<<<...<<<..<<<<........>>>>...>>>.....)))>>>>>..>>>...>>>>>>>>>>...>>>>>>...>>>>>>>>>.>>....>>>>>..<.<<<<<<<<<<<<..>>>>.<......>...>>>>>>>>..>....<..<<<<......<<......<<<<<<.....>>>>>>...>>....>>>>>..<<<<<<...<.<.<<<<.<<<<.<<..<<<<..<<<<<.<<<........>>>.....>>>>>>>>>..>>..>>>>.>>>>.>..>...>>>>>>.<<<<<<<<<<<<<....>>>..>>>>>>>>>>..<<<<<<..<<<<<<<<<<......>>>>>>>>>>.>>>.>>>...	..[<.((((({..(((((((((((..((((.......)))).((((.(((.....[[)))..))))...((....((((..((((.((((((....))))))))))...>}..))))...))...(((((((((((.(.....)...(((((.....[(((..(((((...(((..((((.]......))))...))).....]].)))))..)))...))))))))))...))))))...))))))))).))...])))))(...((((((((((((..)))).((....))...))))))))...)(.....((((.(....((......((((((.....))))))...))...)))))...((((((.......((((.((((.((..((((..(((((.(((........))).....)))))))))..))..)))).))))........)))))).(((((((((((((....)))..))))))))))..((((((..((((((((((......)))))))))).))).)))..)	CryoEM Structure of an Group II Intron Retroelement; E.r IIC Intron
8t2r	B	545	3.1	RF00029	URS0002915678_39491	37993708			0000373		39491	guuugcgcgccaugggcgcgcucuaacggguguaagucccgaacaugcccagguagugggaaauguauagccgaacagcaagggugucuacugugagguggaaucugaaggaagcuguaagcgaaucucugguccgacggacagaaaucgcauauaaggcuaggcuucgagugauaagcuggcaaagaacagugaagucuaauaacuaccaguagaagcagaguaaaugcggcggauauauggagagaaagagcgugcaccuuaagcguggaggucucacagaggugccuaguaacaacgaacugugagaagucagccgagcccauaguagugaagaagucucuguaauggggauggagcgaaggggcgaacaaucaaucaugucucguauugcagaaaugacaacaucugccguaaccaaucggguaaaagguggucaaaucaagcgagacggaaagguaaguugauugaaccgccguauacggaaccguacguacgguggugugagaggucggaauuucgaaauucuuccuacucgauugaau	.....<<<<<...<<<<<<<<<<<..<<<<.......>>>>.<<<<.<<<..(((((>>>..>>>>...<<....<<<<..<<<<.<<<<<<....>>>>>>>>>>.......>>>>...>>...<<<<<<<<<<<...........<<<<<......<<<..<<<<<....<<<..<<<<........>>>>...>>>.....))))).....>>>>>..>>>...>>>>>>>>>>...>>>>>>...>>>>>>>>>.>>....>>>>>...<<<<<<<<<<<<..>>>.<......>...>>>>>>>>..>....<..<<<<......<<......<<<<<<.....>>>>>>...>>....>>>>>..<<<<<<<<..<...<<<<.<<<<.<<..<<<<..<<<<..<<<........>>>......>>>>>>>>..>>..>>>>.>>>>...>....>>>>>>>>.<<<<<<<<<<<<<....>>>..>>>>>>>>>>..<<<<<<..<<<<<<<..>>>>>>>.>>>.>>>........	..[<.((((({..(((((((((((..((((.......)))).((((.(((..[[.[[)))..))))...((....((((..((((.((((((....))))))))))...>}..))))...))...(((((((((((...........(((((.....[(((..(((((....(((..((((.]......))))...))).....]].]].....)))))..))).{.))))))))))...))))))...))))))))).))...])))))(...(((((((((((()))).((....))...))))))))...)......((((.(....((......((((((.....))))))...))...)))))...((((((((......((((.((((.((..((((..((((..(((........)))......))))))))..))..)))).))))........)))))))).(((((((((((((....)))..))))))))))..((((((..(((((((()))))))).))).)))...}....	Structure of a group II intron ribonucleoprotein in the pre-ligation (pre-2F) state; Intron
8t2t	B	537	3.0	RF00029	URS0002617790_39491	37993708			0000373		39491	guuugcgcgccaugggcgcgcucuaacggguguaagucccgaacaugcccagguagugggaaauguauagccgaacagcaagggugucuacugugagguggaaucugaaggaagcuguaagcgaaucucugguccgacggacagaaaucgcauauaaggcuaggcuucgugauaagcuggcaaagaacagugaagucuaauaacuaagcagaguaaaugcggcggauauauggagagaaagagcgugcaccuuaagcguggaggucucacagagguugccuaguaacaacgaacugugagaagucagccgagcccauaguagugaagaagucucuguaauggggauggagcgaaggggcgaacaaucauaaugucucguauugcagaaaugacaacaucugccguaaccaaucggguaaaagguggucaaaucaagcgagacggaaaggauugauugaaccgccguauacggaaccguacguacgguggugugagaggucggaauuucucaauuaagagaaauucuuccuacucgau	.....<<<<<...<<<<<<<<<<<..<<<<.......>>>>.<<<<.<<<....(((>>>..>>>>...<<....<<<<..<<<<.<<<<<<....>>>>>>>>>>.......>>>>...>>...<<<<<<<<<<<...........<<<<<......<<<..<<<<...<<<..<<<<........>>>>...>>>.....)))>>>>..>>>...>>>>>>>>>>...>>>>>>...>>>>>>>>>.>>....>>>>>...<<<<<<<<<<<<<.>>>>.<......>...>>>>>>>>..>....<..<<<<......<<......<<<<<<.....>>>>>>...>>....>>>>>..<<<<<<...<.<.<<<<.<<<<.<<..<<<<..<<<<...<<........>>.......>>>>>>>>..>>..>>>>.>>>>..>>...>>>>>>.<<<<<<<<<<<<<....>>>..>>>>>>>>>>..<<<<<<..<<<<<<<<<<......>>>>>>>>>>.>>>.>>>...	..[<.(..(({..(((((((((((..((((.......)))).((((.(((....[.[)))..))))...((....((((..((((.((((((....))))))))))...>}..))))...))...(((((((((((.(.....)...(((((.....[(((..((((...(((..((((.]......))))...))).....].]))))..)))...))))))))))...))))))...))))))))).))...]))..)(...((((..((((((.)))).((....))...))..))))...)(.....((((.(....((......((((((.....))))))...))...)))))...((((((.....(..(((.((((.((..((((..((((..(............)......))))))))..))..)))).)))...)....)))))).(((((((((((((....)))..))))))))))..((((((..((((((((((......)))))))))).))).)))..)	Structure of a group II intron ribonucleoprotein in the post-ligation (post-2F) state; RNA (537-MER)
8utg	A	21	1.97			38926367					1968826	uauggaagaggcgguugguau	.....................	.......(..........)..	An RNA G-Quadruplex from the NS5 gene in the West Nile Virus Genome; RNA (5'-R(*UP*AP*UP*GP*GP*AP*AP*GP*AP*GP*GP*CP*GP*GP*UP*UP*GP*GP*UP*AP*U)-3')
8utg	B	21	1.97			38926367					1968826	uauggaagaggcgguugguau	.....................	.......(..........)..	An RNA G-Quadruplex from the NS5 gene in the West Nile Virus Genome; RNA (5'-R(*UP*AP*UP*GP*GP*AP*AP*GP*AP*GP*GP*CP*GP*GP*UP*UP*GP*GP*UP*AP*U)-3')