2l1v	A	36	NA		URS000080E08D_32630	19285444					32630	ggagagguucuaguuauacccucuauaaaaaacuaa	..<<<<<...((.......>>>>>.........)).	..(((((...[[[......)))))........]]].	Solution structure of a preQ1 riboswitch (Class I) aptamer bound to preQ1; 36-MER
2miy	A	59	NA	RF01054	URS000080E2D6_1313	24469808			0008616		1313	gcuuggugcuuagcuucuuucaccaagcauauuacacgcggauaaccgccaaaggagaa	<<<<<<<<.....((((((.>>>>>>>>.........<<<<....>>>>..))))))..	((((((((.....[[[[[[.)))))))).........((((....))))..]]]]]]..	Solution NMR structure of a preQ1 Class II riboswitch from Streptococcus pneumoniae; RNA_(59-MER)
3fu2	A	32	2.85	RF00522	URS000080E020_32630	19234468			0008616		32630	agagguucuagccacccucuauaaaaaacuaa	<<<<<...(((....>>>>>........))).	(((((...[[[....)))))........]]].	Cocrystal structure of a class-I preQ1 riboswitch; PreQ1 riboswitch
3fu2	B	33	2.85	RF00522	URS000080E020_32630	19234468			0008616		32630	agagguucuagcacacccucuauaaaaaacuaa	<<<<<...(((.....>>>>>........))).	(((((...[[[.....)))))........]]].	Cocrystal structure of a class-I preQ1 riboswitch; PreQ1 riboswitch
3fu2	C	32	2.85	RF00522	URS000080E020_32630	19234468			0008616		32630	agagguucuagccacccucuauaaaaaacuaa	<<<<<...(((....>>>>>........))).	(((((...[[[....)))))........]]].	Cocrystal structure of a class-I preQ1 riboswitch; PreQ1 riboswitch
3k1v	A	30	2.2		URS000080E037_32630	19234468					32630	agagguucuagccccucuauaaaaaacuaa	<<<<<...(((..>>>>>........))).	(((((...[[[..)))))........]]].	Cocrystal structure of a mutant class-I preQ1 riboswitch; PreQ1 riboswitch
3q50	A	33	2.75		URS000080E32E_32630	21592962,19261617					32630	cugggucgcaguaaccccaguuaacaaaacaag	<<<<<...(......>>>>>............)	(((((...[.[....))))).........]..]	Structural analysis of a class I PreQ1 riboswitch aptamer in the metabolite-bound state; PREQ1 RIBOSWITCH
4jf2	A	77	2.28		URS000080E2AB_47715	23584677					47715	ngaaccgcgaaagcgguuccacgacgauacuuauuuccuuugaucgucguuauuacuggcuucggccacaaaggaga	<<<<<<<<....>>>>>>>><<<<<<<<.<....((((((.>>>>>>>>>......<<<<....>>>>..)))))).	((((((((....))))))))((((((((.......[[[[[..))))))))......((((....))))..]]]]]..	Structure of a class II preQ1 riboswitch reveals ligand recognition by a new fold; PreQ1-II Riboswitch
4rzd	A	99	2.75	RF02680	URS0000868518_853	26106162			0008616		853	nagcaacuuaggauuuuaggcuccccggcgugucgaaccaugccgggccaaacccauagggcuggcggucccugugcggucaaaauucauccgccggag	((((..((..<<<<<<.))))))<<<<<<<<<......>>>>>>>>>....<<<<<<<<<<........>>>>>>>.>>>..>>>>>>...........	[[[[......((((((...]]]](((((((((......)))))))))....((((((((((........))))))).)))..))))))...........	Crystal Structure of a PreQ1 Riboswitch; PreQ1-III Riboswitch (Class 3)
5d5l	A	77	2.5		URS0000A76324_1318634						1318634	ngaaggccgaaaggucuuccacgacgauacuuauuuccuuugaucgucguuauuacuggcuucggccacaaaggaga	<<<<<<<<....>>>>>>>><<<<<<<<.<.....(((((.>>>>>>>>>......<<<<....>>>>..)))))..	((((((((....))))))))((((((((.......[[[[[..))))))))......((((....))))..]]]]]..	PreQ1-II riboswitch with an engineered G-U wobble pair bound to Cs+; PreQ1-II riboswitch
5d5l	B	77	2.5		URS0000A76324_1318634						1318634	ngaaggccgaaaggucuuccacgacgauacuuauuuccuuugaucgucguuauuacuggcuucggccacaaaggaga	<<<<<<<<....>>>>>>>><<<<<<<<.<.....(((((.>>>>>>>>>......<<<<<..>>>>>..)))))..	((((((((....))))))))((((((((.......[[[[[..))))))))......((((....))))..]]]]]..	PreQ1-II riboswitch with an engineered G-U wobble pair bound to Cs+; PreQ1-II riboswitch
5d5l	C	77	2.5		URS0000A76324_1318634						1318634	ngaaggccgaaaggucuuccacgacgauacuuauuuccuuugaucgucguuauuacuggcuucggccacaaaggaga	<<<<<<<<....>>>>>>>><<<<<<<<.<.....(((((.>>>>>>>>>......<<<<<..>>>>>..)))))..	((((((((....))))))))((((((((.......[[[[[..))))))))......((((....))))..]]]]]..	PreQ1-II riboswitch with an engineered G-U wobble pair bound to Cs+; PreQ1-II riboswitch
5d5l	D	77	2.5		URS0000A76324_1318634						1318634	ngaaggccgaaaggucuuccacgacgauacuuauuuccuuugaucgucguuauuacuggcuucggccacaaaggaga	<<<<<<<<....>>>>>>>><<<<<<<<.<.....(((((.>>>>>>>>>......<<<<....>>>>..)))))..	((((((((....))))))))((((((((.......[[[[[..))))))))......((((....))))..]]]]]..	PreQ1-II riboswitch with an engineered G-U wobble pair bound to Cs+; PreQ1-II riboswitch
6vui	A	33	2.681		URS000080E32E_119072	32597951					119072	cugggucgcaguaaccccaguuaacaaaacaag	<<<<<...(......>>>>>............)	(((((...[.[....))))).........]..]	Metabolite-bound PreQ1 riboswitch with Mn2+; PREQ1 RIBOSWITCH
6xkn	A	96	2.73	RF02680	URS0002311A1C_853	39413212			0008616		853	nagcaacuuaggauuuuaggcuccccggcguguaccaugccgggccgaacccauagggcuggcggucccugugcggucaaaauucauccgccggag	((((..((..<<<<<<.))))))<<<<<<<<<...>>>>>>>>>....<<<<<<<<<<........>>>>>>>.>>>..>>>>>>...........	[[[[......((((((...]]]](((((((((...))))))))).....(((((((((........))))))).))...))))))...........	Class III PreQ1 riboswitch mutant A52G; Class III PreQ1 riboswitch
6xko	A	95	2.75	RF02680	URS000231199B_853	39413212			0008616		853	nagcaacuuaggauuuuaggcuccccggcgugaccaugccgggccaaacccauagggcuggcggucccugugcggucgaaauucauccgccggag	((((..((..<<<<<<.))))))<<<<<<<<....>>>>>>>>....<<<<<<<<<<........>>>>>>>.>>>..>>>>>>...........	[[[[......((((((...]]]](((((((((..)))))))))....((((((((((........))))))).)))..))))))...........	Class III PreQ1 riboswitch mutant A84G; Class III PreQ1 riboswitch
7rex	A	34	2.6	RF00522	URS00023119CB_2126436				0008616		2126436	ugugguucgcaaccaucccacauaaaaaaacuag	<<<<<............>>>>>............	(((((............)))))............	PreQ1-1 (type-1) riboswitch in complex with tandem stacked metabolites; RNA (34-MER)
7rex	B	33	2.6	RF00522	URS00023119CB_2126436				0008616		2126436	ugugguucgcaaccaucccacauaaaaaaacua	<<<<<............>>>>>...........	(((((............)))))...........	PreQ1-1 (type-1) riboswitch in complex with tandem stacked metabolites; RNA (34-MER)
7rex	C	30	2.6		URS00023119CB_2126436						2126436	ugugguucgcaaccaucccacaaaaacuag	.<<<<............>>>>.........	(((((............)))))........	PreQ1-1 (type-1) riboswitch in complex with tandem stacked metabolites; RNA (34-MER)
8fb3	A	34	3.0	RF00522	URS00023119CB_2126436	36762498,35017488,36227562			0008616		2126436	ugugguucgcaaccaucccacauaaaaaaacuag	<<<<<............>>>>>............	(((((....[.......)))))...........]	PreQ1-1 (type-1) riboswitch with stacked metabolites and a C10-G34 base pair in the expression platform; RNA (34-MER) Riboswitch
8fb3	B	30	3.0		URS00023119CB_2126436	36762498,35017488,36227562					2126436	ugugguucgcaaccaucccacaaaaacuag	.<<<<............>>>>.........	.((((............)))).........	PreQ1-1 (type-1) riboswitch with stacked metabolites and a C10-G34 base pair in the expression platform; RNA (34-MER) Riboswitch
8fb3	C	33	3.0		URS00023119CB_2126436	36762498,35017488,36227562					2126436	ugugguucgcaaccaucccacaaaaaaaacuag	<<<<<............>>>>>...........	(((((............)))))...........	PreQ1-1 (type-1) riboswitch with stacked metabolites and a C10-G34 base pair in the expression platform; RNA (34-MER) Riboswitch
8fza	A	30	2.3		URS0002681474_562	37660906					562	uuggguucccucaccccaaucauaaaaagg	<<<<<...(((...>>>>>........)))	(((((...[[[...)))))........]]]	Class I type III preQ1 riboswitch from E. coli; PreQ1 Riboswitch (30-MER)
8fza	B	28	2.3		URS0002681474_562	37660906					562	uuggguucccucaccccaauuaaaaagg	.<<<<...(((...>>>>.......)))	.((((...[[[...)))).......]]]	Class I type III preQ1 riboswitch from E. coli; PreQ1 Riboswitch (30-MER)
8g4w	R	47	3.8	RF00522	URS000268143D_562	37264140			0008616		562	gcagagguucuagcuacacccucuauaaaaaacuaaggaccacacga	...<<<<....((......>>>>.........)).............	..(((((....[[......)))))........]].............	Cryo-EM consensus structure of Escherichia coli que-PEC (paused elongation complex) RNA Polymerase plus preQ1 ligand; RNA (47-MER)
8g7e	R	47	3.9	RF00522	URS000268143D_562	37264140			0008616		562	gcagagguucuagcuacacccucuauaaaaaacuaaggaccacacga	...<<<<...(((......>>>>.........)))............	..(((((....[[......)))))........]].............	Cryo-EM structure of 3DVA component 0 of Escherichia coli que-PEC (paused elongation complex) RNA Polymerase plus preQ1 ligand; RNA (47-MER)
8g8z	R	48	4.3	RF00522	URS0002681450_562	37264140			0008616		562	gcagagguucuagcuacacccucuauaaaaaacuaaggaccacacgag	...<<<<...(((......>>>>.........))).............	..(((((....[[......)))))........]]..............	Cryo-EM structure of 3DVA component 1 of Escherichia coli que-PEC (paused elongation complex) RNA Polymerase plus preQ1 ligand; RNA (48-MER)
8toz	A	96	3.0	RF02680		39413212			0008616		853	nagcaaccuaggauuuuaggcuccccggcguguaccaugccgggccaaacccauagggcuggcggucccugugcggucagaauucauccgccggag	((((......<<<<<<...))))<<<<<<<<<...>>>>>>>>>....<<<<<<<<<<........>>>>>>>.>>>..>>>>>>...........	[[[[......((((((...]]]](((((((((...)))))))))....((((((((((........))))))).)))..))))))...........	Class III PreQ1 riboswitch double mutant U8C/A85G; Class-III preQ1 riboswitch
8vpv	A	100	3.04	RF02680		39413212			0008616		853	nagcaacuuaggauuuuaggcuccccggcgugucucgaaccaugccgggccaaacccauagggcuggcggucccugugcggucaaauucauccgccggag	((((..((...<<<<<.))))))<<<<<<<<<........>>>>>>>>>....<<<<<<<<<<........>>>>>>>.>>>.>>>>>............	[[[[......((((((...]]]](((((((((........)))))))))....((((((((((........))))))).))).))))))...........	Class III PreQ1 riboswitch mutant delta84; RNA (101-MER)