1duh A 45 2.7 RF00169 URS000080E0AE_32630 10801497 0006617 0048501 32630 cucuguuuaccaggucagguccggaaggaagcagccaaggcagan ............................................. ............................................. CRYSTAL STRUCTURE OF THE CONSERVED DOMAIN IV OF E. COLI 4.5S RNA; 4.5S RNA DOMAIN IV 1exd B 73 2.7 RF00005 URS000080DE52_562 10881199 0030533 0006412 562 gggguaucgccaagcgguaaggcaccggauucugauuccggaggucgagguucgaauccucguaccccagcca <<<<<<..<<<.........>>>.<<<<<.......>>>>>....<<<<<.......>>>>>>>>>>>..... ((((((..(((.....[...))).(((((.......)))))....(((((..]....)))))))))))..... CRYSTAL STRUCTURE OF A TIGHT-BINDING GLUTAMINE TRNA BOUND TO GLUTAMINE AMINOACYL TRNA SYNTHETASE; GLUTAMINE TRNA APTAMER 1i6u C 37 2.6 URS000080E0AA_32630 11478863 32630 gggcccgguaagucucuucggagauacugccgggccc <<<<<<<<<.<<<<<<....>>>>..>>>>>>>>>>> (((((((((.((((((....))))..))))))))))) RNA-PROTEIN INTERACTIONS: THE CRYSTAL STRUCTURE OF RIBOSOMAL PROTEIN S8/RRNA COMPLEX FROM METHANOCOCCUS JANNASCHII; 16S RRNA FRAGMENT 1i6u D 37 2.6 URS000080E0AA_32630 11478863 32630 gggcccgguaagucucuucggagauacugccgggccc <<<<<<<<<.<<<<<<....>>>>..>>>>>>>>>>> (((((((((.((((((....))))..))))))))))) RNA-PROTEIN INTERACTIONS: THE CRYSTAL STRUCTURE OF RIBOSOMAL PROTEIN S8/RRNA COMPLEX FROM METHANOCOCCUS JANNASCHII; 16S RRNA FRAGMENT 1il2 C 75 2.6 RF00005 URS00005AD0B9_4932 11566892 0030533 0006412 4932 uccgugauaguuuaanggncagaaugggcgcuugucncgugccagaunggggnucaauuccccgucgcggagcca <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>....<<<<<.......>>>>>>>>>>>>.... (((((((..(((.....[....))).(((((.......)))))....(((((..]....)))))))))))).... Crystal Structure of the E. coli Aspartyl-tRNA Synthetase:Yeast tRNAasp:aspartyl-Adenylate Complex; ASPARTYL TRANSFER RNA 1q93 C 27 2.25 URS000080DDB7_32630 14627814 32630 ggugcucaguaggagacgaaccgcacc <<<<<.................>>>>> (((((......(....).....))))) Crystal structure of a mutant of the sarcin/ricin domain from rat 28S rRNA; Sarcin/Ricin 28S rRNA 1q96 A 27 1.75 URS000080E1CA_32630 14627814 32630 ggugcucaguaugagaagaaccgcacc <<<<<.................>>>>> (((((......(....).....))))) Crystal structure of a mutant of the sarcin/ricin domain from rat 28S rRNA; sarcin/ricin 28S rRNA 1xpe B 23 1.94 URS000080DD3F_32630 16403527 32630 cuugcugaagcgcgcacggcaag <<<<<<<.........>>>>>>> (((((((.........))))))) HIV-1 subtype B genomic RNA Dimerization Initiation Site; 5'-R(*CP*UP*UP*GP*CP*UP*GP*AP*AP*GP*CP*GP*CP*GP*CP*AP*CP*GP*GP*CP*AP*AP*G)-3' 1xpf A 23 2.3 URS000080E21C_32630 16403527 32630 cuugcugaggugcacacagcaag <<<<<<<.........>>>>>>> (((((((.........))))))) HIV-1 subtype A genomic RNA Dimerization Initiation Site; 5'-R(*CP*UP*UP*GP*CP*UP*GP*AP*GP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3' 2b8r B 23 2.6 URS000080DD3F_32630 11702070 32630 cuugcugaagcgcgcacggcaag <<<<<<<.........>>>>>>> (((((((.........))))))) Structure oF HIV-1(LAI) genomic RNA DIS; 5'-R(*CP*UP*UP*GP*CP*UP*GP*AP*AP*GP*CP*GP*CP*GP*CP*AP*CP*GP*GP*CP*AP*AP*G)-3' 2b8s A 23 2.76 URS000080E21C_32630 11702070 32630 cuugcugaggugcacacagcaag <<<<<<<.........>>>>>>> (((((((.........))))))) Structure of HIV-1(MAL) genomic RNA DIS; 5'-R(*CP*UP*UP*GP*CP*UP*GP*AP*GP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3' 2bj6 E 10 2.6 URS000080E1AA_9606 15740130,10980452,11829600 9606 ggcauuacgg .......... .......... Crystal Structure of a decameric HNA-RNA hybrid; 5'-R(*GP*GP*CP*AP*UP*UP*AP*CP*GP*GP)-3' 2qk9 B 18 2.55 URS000080E35D_32630 17964265 32630 agugcgacaccugauucc .................. .................. Human RNase H catalytic domain mutant D210N in complex with 18-mer RNA/DNA hybrid; 5'-R(*AP*GP*UP*GP*CP*GP*AP*CP*AP*CP*CP*UP*GP*AP*UP*UP*CP*C)-3' 2xdb G 36 2.55 URS000080E054_29471 21240270 29471 auucaggugauuugcuaccuuuaagugcagcuagan ....<<<<...((((.>>>>......))))...... ....((((....[[[.))))......]]]....... A processed non-coding RNA regulates a bacterial antiviral system; TOXI 3b58 A 13 2.65 URS000080E09E_32630 18596253 32630 ucccaguccaccg ............. ............. Minimally Junctioned Hairpin Ribozyme Incorporates A38G Mutation and a 2',5'-Phosphodiester Linkage at the Active Site; Loop A Substrate strand 3mjb A 29 2.8 URS000080DDC2_32630 20410239 32630 gguuauucagauuagguagucgaaugacc <<<<<<<<.<<<......>>>>>>>>>>> (((.((((.((........)))))).))) Cricket Paralysis Virus IGR IRES Domain 3 RNA bound to sulfate; Domain 3 of the cricket paralysis virus intergenic region IRES RNA 3mjb B 14 2.8 URS000080E14D_32630 20410239 32630 uaagaaauuuaccu .............. .............. Cricket Paralysis Virus IGR IRES Domain 3 RNA bound to sulfate; RNA (5'-R(P*UP*AP*AP*GP*AP*AP*AP*UP*UP*UP*AP*CP*CP*U)-3') 3r1d A 11 1.45 URS00021ED9B0_32630 21596781 32630 gcngcggcggc ........... ........... Crystal structure of GC(8BrG)GCGGCGGC duplex; RNA (5'-R(*GP*CP*(GRB)P*GP*CP*GP*GP*CP*GP*GP*C)-3') 3r1d B 11 1.45 URS00021ED9B0_32630 21596781 32630 gcngcggcggc ........... ........... Crystal structure of GC(8BrG)GCGGCGGC duplex; RNA (5'-R(*GP*CP*(GRB)P*GP*CP*GP*GP*CP*GP*GP*C)-3') 3r1d D 11 1.45 URS00021ED9B0_32630 21596781 32630 gcngcggcggc ........... ........... Crystal structure of GC(8BrG)GCGGCGGC duplex; RNA (5'-R(*GP*CP*(GRB)P*GP*CP*GP*GP*CP*GP*GP*C)-3') 3r1d E 11 1.45 URS00021ED9B0_32630 21596781 32630 gcngcggcggc ........... ........... Crystal structure of GC(8BrG)GCGGCGGC duplex; RNA (5'-R(*GP*CP*(GRB)P*GP*CP*GP*GP*CP*GP*GP*C)-3') 3ski A 68 2.3 RF01510 URS000080DE91_2151 21841796 0032546 0031554 2151 ngccuuauacaggguagcauaaugggcuacugaccccgccuucaaaccuauuuggagacuauaaggun <<<<<<<<<...<<<<<<.....((>>>>>>........<<<<<<<))..>>>>>>>..>>>>>>>>> ((((((((((..((((((.....[[))))))[.....)](((((((]]..)))))))..))))))))) Crystal structure of the 2'- Deoxyguanosine riboswitch bound to 2'-deoxyguanosine; RNA (68-MER) 3ski B 68 2.3 RF01510 URS000080DE91_2151 21841796 0032546 0031554 2151 ggccuuauacaggguagcauaaugggcuacugaccccgccuucaaaccuauuuggagacuauaaggun <<<<<<<<<...<<<<<<.....((>>>>>>........<<<<<<<))..>>>>>>>..>>>>>>>>> ((((((((((..((((((.....[[))))))[.....)](((((((]]..)))))))..))))))))) Crystal structure of the 2'- Deoxyguanosine riboswitch bound to 2'-deoxyguanosine; RNA (68-MER) 3skz A 68 2.605 RF01510 URS000080DE91_2151 21841796 0032546 0031554 2151 ngccuuauacaggguagcauaaugggcuacugaccccgccuucaaaccuauuuggagacuauaaggun <<<<<<<<<...<<<<<<.....((>>>>>>........<<<<<<<))..>>>>>>>..>>>>>>>>> ((((((((((..((((((.....[[))))))[.....)](((((((]]..)))))))..))))))))) Crystal structure of the 2'- deoxyguanosine riboswitch bound to guanosine; RNA (68-MER) 3skz B 68 2.605 RF01510 URS000080DE91_2151 21841796 0032546 0031554 2151 ngccuuauacaggguagcauaaugggcuacugaccccgccuucaaaccuauuuggagacuauaaggun <<<<<<<<<...<<<<<<.....((>>>>>>........<<<<<<<))..>>>>>>>..>>>>>>>>> ((((((((((..((((((.....[[))))))[.....)](((((((]]..)))))))..))))))))) Crystal structure of the 2'- deoxyguanosine riboswitch bound to guanosine; RNA (68-MER) 3slm A 68 2.7 RF01510 URS000080DE91_2151 21841796 0032546 0031554 2151 ngccuuauacaggguagcauaaugggcuacugaccccgccuucaaaccuauuuggagacuauaaggun <<<<<<<<<...<<<<<<.....<<>>>>>>........<<<<<<.>>...>>>>>>..>>>>>>>>> ((((((((((..((((((.....[[))))))[.....)](((((((]]..)))))))..))))))))) Crystal structure of the 2'- Deoxyguanosine riboswitch bound to 2'-deoxyguanosine-5'-monophosphate; RNA (68-MER) 3slm B 68 2.7 RF01510 URS000080DE91_2151 21841796 0032546 0031554 2151 ngccuuauacaggguagcauaaugggcuacugaccccgccuucaaaccuauuuggagacuauaaggun <<<<<<<<<...<<<<<<.....((>>>>>>........<<<<<<<))..>>>>>>>..>>>>>>>>> ((((((((((..((((((.....[[))))))[.....)](((((((]]..)))))))..))))))))) Crystal structure of the 2'- Deoxyguanosine riboswitch bound to 2'-deoxyguanosine-5'-monophosphate; RNA (68-MER) 3slq A 68 2.5 RF01510 URS000080DE91_2151 21841796 0032546 0031554 2151 ngccuuauacaggguagcauaaugggcuacugaccccgccuucaaaccuauuuggagacuauaaggun <<<<<<<<<...<<<<<<.....((>>>>>>........<<<<<<<))..>>>>>>>..>>>>>>>>> ((((((((((..((((((.....[[))))))[.....)](((((((]]..)))))))..))))))))) Crystal structure of the 2'- Deoxyguanosine riboswitch bound to guanosine-5'-monophosphate; RNA (68-MER) 3slq B 68 2.5 RF01510 URS000080DE91_2151 21841796 0032546 0031554 2151 ngccuuauacaggguagcauaaugggcuacugaccccgccuucaaaccuauuuggagacuauaaggun <<<<<<<<<...<<<<<<.....((>>>>>>........<<<<<<<))..>>>>>>>..>>>>>>>>> ((((((((((..((((((.....[[))))))[.....)](((((((]]..)))))))..))))))))) Crystal structure of the 2'- Deoxyguanosine riboswitch bound to guanosine-5'-monophosphate; RNA (68-MER) 3umy B 80 1.9 RF02541 URS000080E005_274 0003735 0005840 274 gggaugcguaggauaggugggagccugugaacccccgccuccgggugggggggaggcgccggugaaauaccacccuuccc <<<<...........<<<<<..<<<......<<<<<<<<....>>>>>>>>...>>>............>>>>>..>>>> ((((.(......[..(((((..(((......((((((((....))))))))...)))..........].)))))).)))) Crystal structure of mutant ribosomal protein T217A TthL1 in complex with 80nt 23S RNA from Thermus thermophilus; RNA (80-MER) 3w3s B 98 3.095 RF01852,RF00005 URS000080E0B2_224324 23649835 0030533 0006412 224324 gggagagguuggccggcuggugccgccccgggacuucaaaucccgugggaggucccgcaagggagcuccggaggguucgauucccucccucucccgcc <<<<<<<<..<<.<<<<....>>>>>>.<<<<<.......>>>>>..<<<<.<<<<....>>>>.>>>>.<<<<<.......>>>>>>>>>>>>>... ((((((((..((.((((..[.))))))((((((.......))))).)((((.((((....)))).)))).(((((..]....)))))))))))))... Crystal structure of A. aeolicus tRNASec in complex with M. kandleri SerRS; selenocysteine tRNA 4e48 D 20 2.5 URS000080E27B_32630 22731704 32630 gcugcugcugcugcugcugc .................... .................... Structure of 20mer double-helical RNA composed of CUG/CUG-repeats; 5'-R(P*GP*CP*UP*GP*CP*UP*GP*CP*UP*GP*CP*UP*GP*CP*UP*GP*CP*UP*GP*C)-3' 4g6p A 13 2.641 URS000080E09E_32630 22989273 32630 ucccnguccaccg ............. ............. Minimal Hairpin Ribozyme in the Precatalytic State with A38P Variation; Loop A Substrate strand 4j5v B 19 2.15 URS000080E070_32630 32630 cagcagcagcccgccgccg ................... ................... Crystal structure of p19 in complex with double-helical RNA 19mer p(CAG)3C(CCG)3; 5'-R(P*CP*AP*GP*CP*AP*GP*CP*AP*GP*CP*CP*CP*GP*CP*CP*GP*CP*CP*G)-3' 4mcf B 11 1.899 URS000080DF2A_9606 25377354 9606 aagacugccug ........... ........... Crystal structure of the Gas5 GRE Mimic; Gas5 GREM Rev 4mcf F 10 1.899 URS000080DF2A_9606 25377354 9606 aagacugccu .......... .......... Crystal structure of the Gas5 GRE Mimic; Gas5 GREM Rev 4qg3 B 80 2.0 RF02541 URS000080E005_274 25664749 0003735 0005840 274 gggaugcguaggauaggugggagccugugaacccccgccuccgggugggggggaggcgccggugaaauaccacccuuccc <<<<...........<<<<<..<<<......<<<<<<<<....>>>>>>>>...>>>............>>>>>..>>>> ((((.(......[..(((((..(((......((((((((....))))))))...)))..........].)))))).)))) Crystal structure of mutant ribosomal protein G219V TthL1 in complex with 80nt 23S RNA from Thermus thermophilus; fragment of 23S rRNA 4qk8 A 122 3.05 RF00379 URS00021ED98F_496866 25086507 0180001 0010468 496866 nguugccgaauccgaaagguacggaggaaccgcuuuuugggguuaaucugcagugaagcugcaguagggauaccuucugucccgcacccgacagcuaacuccggaggcaauaaaggaaggan ...[[[[....<<....>>..(((((....{........[[[[....<<<<<<.....>>>>>>..(((((.<<<<<<)))))..]]]]....}....)))))..]]]].....>>>>>>.. ...((((....((....))..(((((....(.....{.(((((....((((((.....))))))..(((((.[[[[[[)))))..)))).}).)....)))))..)))).....]]]]]].. Thermoanaerobacter pseudethanolicus c-di-AMP riboswitch; C-di-AMP riboswitch 4qka A 120 3.2 RF00379 URS00021ED98F_496866 25086507 0180001 0010468 496866 nguugccgaauccgaaagguacggaggaaccgcuuuuugggguuaaucugcaguagcugcaguagggauaccuucugucccgcacccgacagcuaacuccggaggcaauaaaggaaggan ...[[[[....<<....>>..(((((....{........[[[[....<<<<<<...>>>>>>..(((((.<<<<<<)))))..]]]]....}....)))))..]]]].....>>>>>>.. ...((((....((....))..(((((....(.....{.(((((....((((((...))))))..(((((.[[[[[[)))))..)))).}).)....)))))..)))).....]]]]]].. c-di-AMP riboswitch from Thermoanaerobacter pseudethanolicus, iridium hexamine soak; C-di-AMP riboswitch 4xw0 A 10 1.81 URS00008FED46_9606 26543073 9606 gccunccugc .......... .......... Crystal structure of (GCCU(G-LNA)CCUGC)2 duplex; RNA (5'-R(*GP*CP*CP*UP*(LCG)P*CP*CP*UP*GP*C)-3') 5ah5 C 80 2.1 RF00005 URS00008FED43_358 27713402 0030533 0006412 358 gcccgcauggugaaaucgguaaacacaucgcacaaugcgccgccucuggcuugccgguucaaguccggcugcgggcacca <<<<<<<..<<<...........>>>..<<<<...>>>>..<<<...>>>..<<<<<.......>>>>>>>>>>>>.... (((((((..(((......[....)))..((((...))))..(((...)))..(((((..]....)))))))))))).... Crystal structure of the ternary complex of Agrobacterium radiobacter K84 agnB2 LeuRS-tRNA-LeuAMS; TRNA-LEU TAA ISOACCEPTOR 5ah5 D 81 2.1 RF00005 URS00008FED43_358 27713402 0030533 0006412 358 gcccgcauggugaaaucgguaaacacaucgcacuaaugcgccgccucuggcuugccgguucaaguccggcugcgggcacca <<<<<<<..<<<...........>>>..<<<<....>>>>..<<<...>>>..<<<<<.......>>>>>>>>>>>>.... (((((((..(((......[....)))..((((....))))..(((...)))..(((((..]....)))))))))))).... Crystal structure of the ternary complex of Agrobacterium radiobacter K84 agnB2 LeuRS-tRNA-LeuAMS; TRNA-LEU TAA ISOACCEPTOR 5aox C 87 2.04 RF00017 URS00008FED21_32630 26585389 0006617 0005786 32630 ngccgggcgcgguggcucacgccuguaaucccagcacuuugggaggccgaggcgggaggaucgcgaacacgcgagaccccgucucua <<<<<<<<<.<<..((>>.>>>>>....<<<<.)).....>>>>>>>><<<<<<<<.<..<<<<<....>>>>>..>>>>>>>>>.. (((((((((.(..[[[.).)))))....((((.]].]...))))))))((((((((.(..(((((....)))))..))))))))).. Human Alu RNA retrotransposition complex in the ribosome-stalling conformation; ALU JO CONSENSUS RNA 5f9r A 116 3.4 RF02348 URS00008FED20_186103 26841432 186103 ngcgcauaaagaugagacgcguuuuagagcuaugcuguuuugaaaaaaacagcauagcaaguuaaaauaaggcuaguccguuaucaacuugaaaaaguggcaccgagucggugcuu ....................<<<<<<..<<<<<<<<<<<<<....>>>>>>>>>>>>>....>>>>>>..<<.....>>.......<<<<....>>>>.<<<<<<...>>>>>>.. ....................((((((..((((((((.((.(....).)).))))))))....))))))..(((..).)).......(.((....)).).((((((...)))))).. Crystal structure of catalytically-active Streptococcus pyogenes CRISPR-Cas9 in complex with single-guided RNA and double-stranded DNA primed for target DNA cleavage; RNA (116-MER) 5lr5 C 10 2.4 URS000086850F_9606 28623187 9606 ggncuagunc .......... .......... N6-methyladenine is accommodated in a conventional A-U basepair; RNA (5'-R(*GP*GP*(6MZ)P*CP*UP*AP*GP*UP*(CBV)P*C)-3') 5ndh D 16 1.81 URS0000BC4682_33072 28529131 33072 gnggggacgaccccgc <<<<<<....>>>>>> ((((((....)))))) The structure of the G. violaceus guanidine II riboswitch P2 stem-loop; RNA (5'-R(*GP*(CBV)P*GP*GP*GP*GP*AP*CP*GP*AP*CP*CP*CP*CP*GP*C)-3') 5nef A 18 1.91 URS0000BC4678_33072 28529131 33072 gguggggacgaccccanc <<<<<<<....>>>>>>> (((((((....))))))) The structure of the G. violaceus guanidine II riboswitch P1 stem-loop with guanidine; RNA (5'-R(*GP*GP*UP*GP*GP*GP*GP*AP*CP*GP*AP*CP*CP*CP*CP*AP*(CBV)P*C)-3') 5neo A 18 1.69 URS0000BC4678_33072 28529131 33072 gguggggacgaccccanc <<<<<<<....>>>>>>> (((((((....))))))) The structure of the G. violaceus guanidine II riboswitch P1 stem-loop; RNA (5'-R(*GP*GP*UP*GP*GP*GP*GP*AP*CP*GP*AP*CP*CP*CP*CP*AP*(CBV)P*C)-3') 5nep A 18 1.6 URS0000BC4678_33072 28529131 33072 gguggggacgaccccanc <<<<<<<....>>>>>>> (((((((....))))))) The structure of the G. violaceus guanidine II riboswitch P1 stem-loop with methylguanidine; RNA (5'-R(*GP*GP*UP*GP*GP*GP*GP*AP*CP*GP*AP*CP*CP*CP*CP*AP*(CBV)P*C)-3') 5nom A 18 1.93 URS0000BC4678_33072 28529131 33072 gguggggacgaccccanc <<<<<<<....>>>>>>> (((((((....))))))) The structure of the G. violaceus guanidine II riboswitch P1 stem-loop with guanidine; RNA (5'-R(*GP*GP*UP*GP*GP*GP*GP*AP*CP*GP*AP*CP*CP*CP*CP*AP*(CBV)P*C)-3') 6hbx A 18 1.54 URS0000BC4678_33072 30609994 33072 gguggggacgaccccanc <<<<<<<....>>>>>>> (((((((....))))))) The structure of the G. violaceus guanidine II riboswitch P2 stem-loop with ethylguanidine; RNA (5'-R(*GP*GP*UP*GP*GP*GP*GP*AP*CP*GP*AP*CP*CP*CP*CP*AP*(CBV)P*C)-3') 6hc5 A 18 1.413 URS0000BC4678_33072 30609994 33072 gguggggacgaccccanc <<<<<<<....>>>>>>> (((((((....))))))) The structure of the G. violaceus guanidine II riboswitch P2 stem-loop with audouine; RNA (5'-R(*GP*GP*UP*GP*GP*GP*GP*AP*CP*GP*AP*CP*CP*CP*CP*AP*(CBV)P*C)-3') 6n5k A 125 3.098 RF00379 URS000197CF5B_9606 0180001 0010468 9606 nguugccgaauccaugauuugguacggaggaaccgcuuuuugggguuaaucugcagugaagcugcaguagggauaccuucugucccgcacccgacagcuaacuccggaggcaauaaaggaaggag ...[[[[....<<<.....>>>..(((((....{........[[[[....<<<<<<.....>>>>>>..(((((.<<<<<<)))))..]]]]....}....)))))..]]]].....>>>>>>.. ...((((....(((.....)))..(((((....(.....{.(((((....((((((.....))))))..(((((.[[[[[[)))))..)))).}).)....)))))..)))).....]]]]]].. Structure of Human pir-miRNA-449c Apical Loop and One-base-pair Fused to the YdaO Riboswitch Scaffold; RNA (125-MER) 6n5n A 125 2.951 RF00379 URS000197CF65_9606 0180001 0010468 9606 nguugccgaauccgaugcucgguacggaggaaccgcuuuuugggguuaaucugcagugaagcugcaguagggauaccuucugucccgcacccgacagcuaacuccggaggcaauaaaggaaggag ...[[[[....<<<<...>>>>..(((((....{........[[[[....<<<<<<.....>>>>>>..(((((.<<<<<<)))))..]]]]....}....)))))..]]]].....>>>>>>.. ...((((....(((.....)))..(((((....(.....{.(((((....((((((.....))))))..(((((.[[[[[[)))))..)))).}).)....)))))..)))).....]]]]]].. Structure of Human pir-miRNA-208a Apical Loop and One-base-pair Fused to the YdaO Riboswitch Scaffold; RNA (125-MER) 6n5o A 126 2.708 RF00379 URS000197CF62_9606 0180001 0010468 9606 nguugccgaauccgaucuggcgguacggaggaaccgcuuuuugggguuaaucugcagugaagcugcaguagggauaccuucugucccgcacccgacagcuaacuccggaggcaauaaaggaaggag ...[[[[....<<<......>>>..(((((....{........[[[[....<<<<<<.....>>>>>>..(((((.<<<<<<)))))..]]]]....}....)))))..]]]].....>>>>>>.. ...((((....(((......)))..(((((....(.....{.(((((....((((((.....))))))..(((((.[[[[[[)))))..)))).}).)....)))))..)))).....]]]]]].. Structure of Human pir-miRNA-202 Apical Loop and One-base-pair Fused to the YdaO Riboswitch Scaffold; RNA (126-MER) 6n5q A 128 2.946 RF00379 URS000197CF57_9606 0180001 0010468 9606 nguugccgaauccaccuagaaaugguacggaggaaccgcuuuuugggguuaaucugcagugaagcugcaguagggauaccuucugucccgcacccgacagcuaacuccggaggcaauaaaggaaggag ...[[[[....<<<........>>>..(((((....{........[[[[....<<<<<<.....>>>>>>..(((((.<<<<<<)))))..]]]]....}....)))))..]]]].....>>>>>>.. ...((((....(((........)))..(((((....(.....{.(((((....((((((.....))))))..(((((.[[[[[[)))))..)))).}).)....)))))..)))).....]]]]]].. Structure of Human pir-miRNA-378a Apical Loop and One-base-pair Fused to the YdaO Riboswitch Scaffold; RNA (128-MER) 6n5s A 123 2.802 RF00379 URS000197CF70_9606 0180001 0010468 9606 nguugccgaauccaaaguugguacggaggaaccgcuuuuugggguuaaucugcagugaagcugcaguagggauaccuucugucccgcacccgacagcuaacuccggaggcaauaaaggaagga ...[[[[....<<<....>>>..(((((....{........[[[[....<<<<<<.....>>>>>>..(((((.<<<<<<)))))..]]]]....}....)))))..]]]].....>>>>>>. ...((((....(((....)))..(((((....(.....{.(((((....((((((.....))))))..(((((.[[[[[[)))))..)))).}).)....)))))..)))).....]]]]]]. Structure of Human pir-miRNA-320b-2 Apical Loop and One-base-pair Stem Fused to the YdaO Riboswitch Scaffold; RNA (123-MER) 6n5t A 126 2.787 RF00379 URS000197CF7C_9606 0180001 0010468 9606 nguugccgaauccccuagaaagguacggaggaaccgcuuuuugggguuaaucugcagugaagcugcaguagggauaccuucugucccgcacccgacagcuaacuccggaggcaauaaaggaaggag ...[[[[....<<........>>..(((((....{........[[[[....<<<<<<.....>>>>>>..(((((.<<<<<<)))))..]]]]....}....)))))..]]]].....>>>>>>.. ...((((....((........))..(((((....(.....{.(((((....((((((.....))))))..(((((.[[[[[[)))))..)))).}).)....)))))..)))).....]]]]]].. Structure of Human pir-miRNA-378a Apical Loop Fused to the YdaO Riboswitch Scaffold; RNA (126-MER) 6ufm B 98 2.82 URS000197CF74_37329 31792448 37329 ggcgacgauccggccaucaccggggagccuucggaagaacggcgccgccggaaacggcggcgcucaguagaaccgaacgggugagcccgucacagcuc <<<.....<<<<<......>>>>>..>>><<<<<......<<<<<<<<<<....>>>>>>>>>>........>>>>>(((..<<<<))).....>>>> (((......((((......))))...)))(((((......((((((((((....))))))))))........)))))[[[..((((]]].....)))) Cocrystal Structure of the Nocardia farcinica ileS T-box riboswitch in complex with its cognate tRNA; RNA (98-MER) 6wjr X 111 2.7 RF00050 URS000080DE72_851 33103111 0010181 851 ggaucuucggggcagggugaaauucccgaccggugguauaguccacgaaaguauuugcuuugauuuggugaaauuccaaaaccgacaguagagucuggaugagagaagauu .<<<<<<<......<<<.......>>>.((<.<<<<....((>>>>.<<<<......>>>>..<<<<<.......>>>>>)).>.<<<....))>>>.......>>>>>>> .(((((((......(((.......))).[[((((((....[[))))..(((......)))...(((((.......)))))]])).(((....]]))).......))))))) Apo structure of the FMN riboswitch aptamer domain in the presence of sulfate; RNA (112-MER) 6wtr A 125 3.082 RF00379 URS000197CF84_9606 0180001 0010468 9606 nguugccgaauccuuuacuugguacggaggaaccgcuuuuugggguuaaucugcagugaagcugcaguagggauaccuucugucccgcacccgacagcuaacuccggaggcaauaaaggaaggag ...[[[[....<<.......>>..(((((....{........[[[[....<<<<<<.....>>>>>>..(((((.<<<<<<)))))..]]]]....}....)))))..]]]].....>>>>>>.. ...((((....((.......))..(((((....(.....{.(((((....((((((.....))))))..(((((.[[[[[[)))))..)))).}).)....)))))..)))).....]]]]]].. Structure of Human pir-miRNA-300 Apical Loop Fused to the YdaO Riboswitch Scaffold; RNA (125-MER) 7e9e A 33 1.57 URS0000E60BA5_119072 34615874 119072 cugggucgcagunnccccaguuaacaaaacaag <<<<<...(......>>>>>............) (((((...[.[....))))).........]..] Crystal structure of a class I PreQ1 riboswitch aptamer (ab13-14) complexed with a cognate ligand-derived photoaffinity probe; 33-mer RNA 7kd1 A 89 1.9 RF01831 URS000080DF21_210007 33571639 0046653 210007 ggagaguagaugauucgcguuaagugugugugaaugggaugucgucacacaacgaagcgagagcgcggugaaucauugcauccgcucca <<<<....<<<<<<<<<<<<....<<<<<<<<<...(((((...>>>>>>>.>>..<<....>>>>>.>>>>>>>>>.))))).>>>>. ((((....((((((((((((......(((((((...[[[[[...))))))).....((....))))).))))))))).]]]]].)))). Apo structure of the THF riboswitch aptamer domain; tetrahydrofolate riboswitch aptamer domain 7m2t U 10 2.71 URS0000A7631E_12881 34866603 12881 aaaaaaaaaa .......... .......... Crystallographic Structure of the Monoclinic Form of Satellite Tobacco Mosaic Virus; RNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3') 7m2t i 10 2.71 URS0001C1D8A6_12881 34866603 12881 uuuuuuuuuu .......... .......... Crystallographic Structure of the Monoclinic Form of Satellite Tobacco Mosaic Virus; RNA (27-mer) 7m2t m 10 2.71 URS0001C1D8A6_12881 34866603 12881 uuuuuuuuuu .......... .......... Crystallographic Structure of the Monoclinic Form of Satellite Tobacco Mosaic Virus; RNA (27-mer) 7m2t ee 10 2.71 URS0000A7631E_12881 34866603 12881 aaaaaaaaaa .......... .......... Crystallographic Structure of the Monoclinic Form of Satellite Tobacco Mosaic Virus; RNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3') 8swc B 20 2.68 URS00021ED8FD_9606 9606 uggcgagugggugagugagg .................... .................... RNase H complex with ASO (OOO) and RNA; RNA (5'-R(*UP*GP*GP*CP*GP*AP*GP*UP*GP*GP*GP*UP*GP*AP*GP*UP*GP*AP*GP*G)-3') 9aus C 22 2.07 39178230 32644 gguugaaacacgaccugagaaa <<<<<.....>>>>>....... (((((.....)))))....... Crystal structure of loop-closed dumbbell RNA bridged by glycine; Loop-closed dumbbell RNA bridged by glycine