SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    201001 3x2l:A (0.83) BS02 40S ? N/A B3Y002 26601228
    201002 3x2m:A (0.64) BS01 BGC ? N/A B3Y002 26601228
    201003 3x2m:A (0.64) BS02 BGC ? N/A B3Y002 26601228
    201004 3x2m:A (0.64) BS03 BGC ? N/A B3Y002 26601228
    201005 3x2m:A (0.64) BS04 BGC ? N/A B3Y002 26601228
    201006 3x2m:A (0.64) BS05 BGC ? N/A B3Y002 26601228
    201007 3x2m:A (0.64) BS06 BGC ? N/A B3Y002 26601228
    201008 3x2m:A (0.64) BS07 BGC ? N/A B3Y002 26601228
    201009 3x2p:A (0.99) BS01 BGC ? N/A B3Y002 26601228
    201010 3x2p:A (0.99) BS02 BGC ? N/A B3Y002 26601228
    201011 3x2p:A (0.99) BS03 BGC ? N/A B3Y002 26601228
    201012 3x2p:A (0.99) BS04 BGC ? N/A B3Y002 26601228
    201013 3x2q:A (2.0) BS01 CYN 7.1.1.9 GO:0004129 ... P00396 26057802
    201014 3x2q:A (2.0) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 26057802
    201015 3x2q:A (2.0) BS03 HEA 7.1.1.9 GO:0004129 ... P00396 26057802
    201016 3x2q:A (2.0) BS04 CU 7.1.1.9 GO:0004129 ... P00396 26057802
    201017 3x2q:A (2.0) BS05 MG 7.1.1.9 GO:0004129 ... P00396 26057802
    201018 3x2q:B (2.0) BS01 CUA 7.1.1.9 GO:0004129 ... P68530 26057802
    201019 3x2q:C (2.0) BS01 DMU 7.1.1.9 GO:0004129 ... P00415 26057802
    201020 3x2q:F (2.0) BS01 ZN 1.9.3.1 GO:0005740 ... P00428 26057802
    201021 3x2q:M (2.0) BS01 DMU 1.9.3.1 GO:0006123 ... P10175 26057802
    201022 3x2q:N (2.0) BS01 CYN 7.1.1.9 GO:0004129 ... P00396 26057802
    201023 3x2q:N (2.0) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 26057802
    201024 3x2q:N (2.0) BS03 HEA 7.1.1.9 GO:0004129 ... P00396 26057802
    201025 3x2q:N (2.0) BS04 CU 7.1.1.9 GO:0004129 ... P00396 26057802
    201026 3x2q:N (2.0) BS05 MG 7.1.1.9 GO:0004129 ... P00396 26057802
    201027 3x2q:O (2.0) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 26057802
    201028 3x2q:O (2.0) BS02 CUA 7.1.1.9 GO:0004129 ... P68530 26057802
    201029 3x2q:P (2.0) BS01 DMU 7.1.1.9 GO:0004129 ... P00415 26057802
    201030 3x2q:S (2.0) BS01 ZN 1.9.3.1 GO:0005740 ... P00428 26057802
    201031 3x2q:T (2.0) BS01 DMU 1.9.3.1 GO:0005743 ... P07471 26057802
    201032 3x2q:Z (2.0) BS01 DMU 1.9.3.1 GO:0006123 ... P10175 26057802
    201033 3x2s:A (2.8) BS01 JPY 2.7.4.3 GO:0004017 ... A0A0J9X1X4 25646669
    201034 3x2s:A (2.8) BS02 JPY 2.7.4.3 GO:0004017 ... A0A0J9X1X4 25646669
    201035 3x2s:A (2.8) BS03 AP5 2.7.4.3 GO:0004017 ... A0A0J9X1X4 25646669
    201036 3x2s:B (2.8) BS01 JPY 2.7.4.3 GO:0004017 ... A0A0J9X1X4 25646669
    201037 3x2s:B (2.8) BS02 JPY 2.7.4.3 GO:0004017 ... A0A0J9X1X4 25646669
    201038 3x2s:B (2.8) BS03 AP5 2.7.4.3 GO:0004017 ... A0A0J9X1X4 25646669
    201039 3x2t:A (2.7) BS01 ADP 3.6.4.- GO:0003777 ... P28738 25777528
    201040 3x2t:B (2.7) BS01 ADP 3.6.4.- GO:0003777 ... P28738 25777528
    201041 3x2u:A (2.4) BS01 peptide 2.7.11.11 GO:0000287 ... P05132 26585512
    201042 3x2u:A (2.4) BS02 ATP 2.7.11.11 GO:0000287 ... P05132 26585512
    201043 3x2u:A (2.4) BS03 MG 2.7.11.11 GO:0000287 ... P05132 26585512
    201044 3x2v:A (1.77) BS01 peptide 2.7.11.11 GO:0000287 ... P05132 26585512
    201045 3x2v:A (1.77) BS02 MG 2.7.11.11 GO:0000287 ... P05132 26585512
    201046 3x2v:A (1.77) BS03 ATP 2.7.11.11 GO:0000287 ... P05132 26585512
    201047 3x2v:A (1.77) BS04 CO3 2.7.11.11 GO:0000287 ... P05132 26585512
    201048 3x2w:A (1.7) BS01 peptide 2.7.11.11 GO:0000287 ... P05132 26585512
    201049 3x2w:A (1.7) BS02 MG 2.7.11.11 GO:0000287 ... P05132 26585512
    201050 3x2w:A (1.7) BS03 ATP 2.7.11.11 GO:0000287 ... P05132 26585512
    201051 3x2w:A (1.7) BS04 CO3 2.7.11.11 GO:0000287 ... P05132 26585512
    201052 3x2x:A (3.42) BS01 MN ? GO:0016787 ... Q9X0P5 N/A
    201053 3x2x:B (3.42) BS01 MN ? GO:0016787 ... Q9X0P5 N/A
    201054 3x30:A (1.921) BS01 MN ? GO:0016787 ... Q9X0P5 N/A
    201055 3x31:A (2.11) BS01 41V ? GO:0003677 ... P11473 N/A
    201056 3x32:A (0.83) BS01 HEM ? GO:0020037 ... P00172 26143928
    201057 3x32:A (0.83) BS02 CA ? GO:0020037 ... P00172 26143928
    201058 3x33:A (0.93) BS01 HEM ? GO:0020037 ... P00172 26143928
    201059 3x34:A (0.76) BS01 HEM ? GO:0020037 ... P00172 26143928
    201060 3x34:A (0.76) BS02 CA ? GO:0020037 ... P00172 26143928
    201061 3x35:A (0.95) BS01 HEM ? GO:0020037 ... P00172 26143928
    201062 3x36:A (1.93) BS01 41W ? GO:0003677 ... P11473 N/A
    201063 3x39:A (1.5) BS01 HEC ? GO:0005506 ... P00099 25853415
    201064 3x39:B (1.5) BS01 HEC ? GO:0005506 ... P00099 25853415
    201065 3x3b:A (2.3) BS01 RET ? GO:0016020 ... N0DKS8 25849775
    201066 3x3c:A (2.3) BS01 RET ? GO:0016020 ... N0DKS8 25849775
    201067 3x3m:A (1.9) BS01 CA 3.6.-.- N/A P9WNR7 26396239
    201068 3x3n:A (2.0) BS01 CA 3.6.-.- N/A P9WNR7 26396239
    201069 3x3x:A (1.57) BS01 CU 1.4.3.21 GO:0005507 ... P46881 26269595
    201070 3x3x:A (1.57) BS02 PEL 1.4.3.21 GO:0005507 ... P46881 26269595
    201071 3x3x:A (1.57) BS03 GOL 1.4.3.21 GO:0005507 ... P46881 26269595
    201072 3x3x:A (1.57) BS04 GOL 1.4.3.21 GO:0005507 ... P46881 26269595
    201073 3x3x:B (1.57) BS01 CU 1.4.3.21 GO:0005507 ... P46881 26269595
    201074 3x3x:B (1.57) BS02 PEL 1.4.3.21 GO:0005507 ... P46881 26269595
    201075 3x3y:A (1.499) BS01 CU 1.4.3.21 GO:0005507 ... P46881 26269595
    201076 3x3y:A (1.499) BS02 GOL 1.4.3.21 GO:0005507 ... P46881 26269595
    201077 3x3y:A (1.499) BS03 GOL 1.4.3.21 GO:0005507 ... P46881 26269595
    201078 3x3y:A (1.499) BS04 GOL 1.4.3.21 GO:0005507 ... P46881 26269595
    201079 3x3y:A (1.499) BS05 GOL 1.4.3.21 GO:0005507 ... P46881 26269595
    201080 3x3y:A (1.499) BS06 GOL 1.4.3.21 GO:0005507 ... P46881 26269595
    201081 3x3y:A (1.499) BS07 GOL 1.4.3.21 GO:0005507 ... P46881 26269595
    201082 3x3y:A (1.499) BS08 GOL 1.4.3.21 GO:0005507 ... P46881 26269595
    201083 3x3y:B (1.499) BS01 CU 1.4.3.21 GO:0005507 ... P46881 26269595
    201084 3x3y:B (1.499) BS02 GOL 1.4.3.21 GO:0005507 ... P46881 26269595
    201085 3x3y:B (1.499) BS03 GOL 1.4.3.21 GO:0005507 ... P46881 26269595
    201086 3x3z:A (1.51) BS01 CU 1.4.3.21 GO:0005507 ... P46881 26269595
    201087 3x3z:A (1.51) BS02 GOL 1.4.3.21 GO:0005507 ... P46881 26269595
    201088 3x3z:A (1.51) BS03 GOL 1.4.3.21 GO:0005507 ... P46881 26269595
    201089 3x3z:A (1.51) BS04 GOL 1.4.3.21 GO:0005507 ... P46881 26269595
    201090 3x3z:A (1.51) BS05 GOL 1.4.3.21 GO:0005507 ... P46881 26269595
    201091 3x3z:A (1.51) BS06 GOL 1.4.3.21 GO:0005507 ... P46881 26269595
    201092 3x3z:B (1.51) BS01 GOL 1.4.3.21 GO:0005507 ... P46881 26269595
    201093 3x3z:B (1.51) BS02 CU 1.4.3.21 GO:0005507 ... P46881 26269595
    201094 3x3z:B (1.51) BS03 GOL 1.4.3.21 GO:0005507 ... P46881 26269595
    201095 3x3z:B (1.51) BS04 GOL 1.4.3.21 GO:0005507 ... P46881 26269595
    201096 3x3z:B (1.51) BS05 GOL 1.4.3.21 GO:0005507 ... P46881 26269595
    201097 3x3z:B (1.51) BS06 GOL 1.4.3.21 GO:0005507 ... P46881 26269595
    201098 3x3z:B (1.51) BS07 GOL 1.4.3.21 GO:0005507 ... P46881 26269595
    201099 3x40:A (1.85) BS01 CU 1.4.3.21 GO:0005507 ... P46881 26269595
    201100 3x40:A (1.85) BS02 GOL 1.4.3.21 GO:0005507 ... P46881 26269595
    201101 3x40:A (1.85) BS03 GOL 1.4.3.21 GO:0005507 ... P46881 26269595
    201102 3x40:B (1.85) BS01 CU 1.4.3.21 GO:0005507 ... P46881 26269595
    201103 3x41:A (1.87) BS01 CU 1.4.3.21 GO:0005507 ... P46881 26269595
    201104 3x41:B (1.87) BS01 CU 1.4.3.21 GO:0005507 ... P46881 26269595
    201105 3x42:A (1.875) BS01 CU 1.4.3.21 GO:0005507 ... P46881 26269595
    201106 3x42:A (1.875) BS02 GOL 1.4.3.21 GO:0005507 ... P46881 26269595
    201107 3x42:A (1.875) BS03 GOL 1.4.3.21 GO:0005507 ... P46881 26269595
    201108 3x42:A (1.875) BS04 GOL 1.4.3.21 GO:0005507 ... P46881 26269595
    201109 3x42:A (1.875) BS05 GOL 1.4.3.21 GO:0005507 ... P46881 26269595
    201110 3x42:A (1.875) BS06 GOL 1.4.3.21 GO:0005507 ... P46881 26269595
    201111 3x42:B (1.875) BS01 CU 1.4.3.21 GO:0005507 ... P46881 26269595
    201112 3x42:B (1.875) BS02 GOL 1.4.3.21 GO:0005507 ... P46881 26269595
    201113 3x42:B (1.875) BS03 GOL 1.4.3.21 GO:0005507 ... P46881 26269595
    201114 3x42:B (1.875) BS04 GOL 1.4.3.21 GO:0005507 ... P46881 26269595
    201115 3x43:A (2.25) BS01 PLP 2.5.1.47
    2.6.99.3
    GO:0003824 ... D2Z027 26207937
    201116 3x43:B (2.25) BS01 PLP 2.5.1.47
    2.6.99.3
    GO:0003824 ... D2Z027 26207937
    201117 3x43:C (2.25) BS01 PLP 2.5.1.47
    2.6.99.3
    GO:0003824 ... D2Z027 26207937
    201118 3x43:D (2.25) BS01 PLP 2.5.1.47
    2.6.99.3
    GO:0003824 ... D2Z027 26207937
    201119 3x43:E (2.25) BS01 PLP 2.5.1.47
    2.6.99.3
    GO:0003824 ... D2Z027 26207937
    201120 3x43:F (2.25) BS01 PLP 2.5.1.47
    2.6.99.3
    GO:0003824 ... D2Z027 26207937
    201121 3x43:G (2.25) BS01 PLP 2.5.1.47
    2.6.99.3
    GO:0003824 ... D2Z027 26207937
    201122 3x43:H (2.25) BS01 PLP 2.5.1.47
    2.6.99.3
    GO:0003824 ... D2Z027 26207937
    201123 3x44:A (1.9) BS01 PUS 2.5.1.47
    2.6.99.3
    GO:0003824 ... D2Z027 26207937
    201124 3x44:B (1.9) BS01 PUS 2.5.1.47
    2.6.99.3
    GO:0003824 ... D2Z027 26207937
    201125 3xim:A (2.3) BS01 SOR 5.3.1.5 GO:0000287 ... P12851 1540579
    201126 3xim:A (2.3) BS02 CO 5.3.1.5 GO:0000287 ... P12851 1540579
    201127 3xim:A (2.3) BS03 CO 5.3.1.5 GO:0000287 ... P12851 1540579
    201128 3xim:B (2.3) BS01 SOR 5.3.1.5 GO:0000287 ... P12851 1540579
    201129 3xim:B (2.3) BS02 CO 5.3.1.5 GO:0000287 ... P12851 1540579
    201130 3xim:B (2.3) BS03 CO 5.3.1.5 GO:0000287 ... P12851 1540579
    201131 3xim:C (2.3) BS01 SOR 5.3.1.5 GO:0000287 ... P12851 1540579
    201132 3xim:C (2.3) BS02 CO 5.3.1.5 GO:0000287 ... P12851 1540579
    201133 3xim:C (2.3) BS03 CO 5.3.1.5 GO:0000287 ... P12851 1540579
    201134 3xim:D (2.3) BS01 SOR 5.3.1.5 GO:0000287 ... P12851 1540579
    201135 3xim:D (2.3) BS02 CO 5.3.1.5 GO:0000287 ... P12851 1540579
    201136 3xim:D (2.3) BS03 CO 5.3.1.5 GO:0000287 ... P12851 1540579
    201137 3xis:A (1.6) BS01 XYS 5.3.1.5 GO:0000287 ... P24300 2006134
    201138 3xis:A (1.6) BS02 MG 5.3.1.5 GO:0000287 ... P24300 2006134
    201139 3xis:A (1.6) BS03 MG 5.3.1.5 GO:0000287 ... P24300 2006134
    201140 3yas:A (1.85) BS01 ACN 4.1.2.47 GO:0003824 ... P52704 10548044
    201141 3ypi:A (2.8) BS01 PGH 5.3.1.1 GO:0004807 ... P00942 2007138
    201142 3ypi:B (2.8) BS01 PGH 5.3.1.1 GO:0004807 ... P00942 2007138
    201143 3zbf:A (2.2) BS01 VGH 2.7.10.1 GO:0004672 ... P08922 23724914 MOAD: Ki=2.1nM
    BindingDB: IC50=6.5nM, Kd=4.1nM, Ki=0.600000nM
    201144 3zbi:B (8.5) BS01 peptide ? N/A Q46704 23511972
    201145 3zbi:D (8.5) BS01 peptide ? N/A Q46705 23511972
    201146 3zbi:E (8.5) BS01 peptide ? N/A Q46704 23511972
    201147 3zbi:G (8.5) BS01 peptide ? N/A Q46705 23511972
    201148 3zbi:H (8.5) BS01 peptide ? N/A Q46704 23511972
    201149 3zbi:J (8.5) BS01 peptide ? N/A Q46705 23511972
    201150 3zbi:K (8.5) BS01 peptide ? N/A Q46704 23511972
    201151 3zbi:M (8.5) BS01 peptide ? N/A Q46705 23511972
    201152 3zbi:N (8.5) BS01 peptide ? N/A Q46704 23511972
    201153 3zbi:P (8.5) BS01 peptide ? N/A Q46705 23511972
    201154 3zbi:Q (8.5) BS01 peptide ? N/A Q46704 23511972
    201155 3zbi:S (8.5) BS01 peptide ? N/A Q46705 23511972
    201156 3zbi:T (8.5) BS01 peptide ? N/A Q46704 23511972
    201157 3zbi:V (8.5) BS01 peptide ? N/A Q46705 23511972
    201158 3zbi:W (8.5) BS01 peptide ? N/A Q46704 23511972
    201159 3zbi:Y (8.5) BS01 peptide ? N/A Q46705 23511972
    201160 3zbi:Z (8.5) BS01 peptide ? N/A Q46704 23511972
    201161 3zbi:b (8.5) BS01 peptide ? N/A Q46705 23511972
    201162 3zbi:c (8.5) BS01 peptide ? N/A Q46704 23511972
    201163 3zbi:e (8.5) BS01 peptide ? N/A Q46705 23511972
    201164 3zbi:f (8.5) BS01 peptide ? N/A Q46704 23511972
    201165 3zbi:h (8.5) BS01 peptide ? N/A Q46705 23511972
    201166 3zbi:i (8.5) BS01 peptide ? N/A Q46704 23511972
    201167 3zbi:k (8.5) BS01 peptide ? N/A Q46705 23511972
    201168 3zbi:l (8.5) BS01 peptide ? N/A Q46704 23511972
    201169 3zbi:n (8.5) BS01 peptide ? N/A Q46705 23511972
    201170 3zbi:o (8.5) BS01 peptide ? N/A Q46704 23511972
    201171 3zbm:A (1.87) BS01 CU 1.7.2.1 GO:0005507 ... B2UHR8 23535590
    201172 3zbm:A (1.87) BS02 CU 1.7.2.1 GO:0005507 ... B2UHR8 23535590
    201173 3zbm:A (1.87) BS03 HEC 1.7.2.1 GO:0005507 ... B2UHR8 23535590
    201174 3zbn:A (2.45) BS01 COA 2.3.1.176 GO:0016746 ... E9AW84 23909465
    201175 3zbn:B (2.45) BS01 COA 2.3.1.176 GO:0016746 ... E9AW84 23909465
    201176 3zbn:D (2.45) BS01 COA 2.3.1.176 GO:0016746 ... E9AW84 23909465
    201177 3zbp:A (2.0) BS01 GDP 3.6.5.- GO:0000166 ... Q8SDC3 23528827
    201178 3zbq:A (1.7) BS01 GDP 3.6.5.- GO:0000166 ... Q8SDC3 23528827
    201179 3zbr:A (2.304) BS01 NAP 3.1.4.37 GO:0004113 ... P16330 23831225
    201180 3zbr:B (2.304) BS01 NAP 3.1.4.37 GO:0004113 ... P16330 23831225
    201181 3zbs:A (2.45) BS01 OVE 3.1.4.37 GO:0004113 ... P16330 23831225
    201182 3zbt:A (1.92) BS01 FAD 1.18.1.2 GO:0016491 ... P21890 24200908
    201183 3zbu:A (1.89) BS01 FAD 1.18.1.2 GO:0016491 ... P21890 24200908
    201184 3zbv:A (1.64) BS01 ZN ? GO:0001525 ... Q64438 23170778
    201185 3zbv:A (1.64) BS02 SO4 ? GO:0001525 ... Q64438 23170778
    201186 3zbv:A (1.64) BS03 SO4 ? GO:0001525 ... Q64438 23170778
    201187 3zbw:A (1.801) BS01 SO4 3.1.27.- GO:0001525 ... P97802 23170778
    201188 3zbw:A (1.801) BS02 ZN 3.1.27.- GO:0001525 ... P97802 23170778
    201189 3zbw:B (1.801) BS01 SO4 3.1.27.- GO:0001525 ... P97802 23170778
    201190 3zbx:A (2.2) BS01 6XE 2.7.10.1 GO:0004672 ... P08581 23944843 MOAD: Ki=0.006uM
    BindingDB: IC50=5nM, Ki=6nM
    201191 3zby:A (1.93) BS01 GLC 1.14.15.28 GO:0004497 ... A0R4Q6 23489718
    201192 3zby:A (1.93) BS02 HEM 1.14.15.28 GO:0004497 ... A0R4Q6 23489718
    201193 3zby:B (1.93) BS01 GLC 1.14.15.28 GO:0004497 ... A0R4Q6 23489718
    201194 3zby:B (1.93) BS02 HEM 1.14.15.28 GO:0004497 ... A0R4Q6 23489718
    201195 3zby:C (1.93) BS01 GLC 1.14.15.28 GO:0004497 ... A0R4Q6 23489718
    201196 3zby:C (1.93) BS02 HEM 1.14.15.28 GO:0004497 ... A0R4Q6 23489718
    201197 3zby:D (1.93) BS01 GLC 1.14.15.28 GO:0004497 ... A0R4Q6 23489718
    201198 3zby:D (1.93) BS02 HEM 1.14.15.28 GO:0004497 ... A0R4Q6 23489718
    201199 3zby:E (1.93) BS01 GLC 1.14.15.28 GO:0004497 ... A0R4Q6 23489718
    201200 3zby:E (1.93) BS02 HEM 1.14.15.28 GO:0004497 ... A0R4Q6 23489718

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).