SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    210801 4bwl:B (2.0) BS01 SI3 4.1.3.3 GO:0005737 ... P0A6L4 24521460
    210802 4bwl:C (2.0) BS01 MN9 4.1.3.3 GO:0005737 ... P0A6L4 24521460
    210803 4bwl:D (2.0) BS01 SI3 4.1.3.3 GO:0005737 ... P0A6L4 24521460
    210804 4bwm:A (1.749) BS01 dna 2.7.7.7 GO:0001882 ... P19821 24106012
    210805 4bwm:A (1.749) BS02 rna 2.7.7.7 GO:0001882 ... P19821 24106012
    210806 4bwm:A (1.749) BS03 DCT 2.7.7.7 GO:0001882 ... P19821 24106012
    210807 4bwo:A (1.8) BS01 SO4 ? N/A Q47212 24833052
    210808 4bwo:A (1.8) BS02 SO4 ? N/A Q47212 24833052
    210809 4bwo:B (1.8) BS01 SO4 ? N/A Q47212 24833052
    210810 4bwp:A (3.6) BS01 AN2 ? GO:0000289 ... Q95RR8 23932717
    210811 4bwp:B (3.6) BS01 AN2 ? GO:0000289 ... Q95RR8 23932717
    210812 4bwq:A (2.1) BS01 peptide ? GO:0000245 ... P83876 24781215
    210813 4bwq:C (2.1) BS01 peptide ? GO:0000245 ... P83876 24781215
    210814 4bwq:C (2.1) BS02 peptide ? GO:0000245 ... P83876 24781215
    210815 4bwq:E (2.1) BS01 peptide ? GO:0000245 ... P83876 24781215
    210816 4bwq:E (2.1) BS02 peptide ? GO:0000245 ... P83876 24781215
    210817 4bwq:G (2.1) BS01 peptide ? GO:0000245 ... P83876 24781215
    210818 4bwr:A (1.74) BS01 MG ? GO:0009986 ... A0A0H2VDN9 24099525
    210819 4bws:A (2.5) BS01 peptide ? GO:0000245 ... P83876 24781215
    210820 4bws:D (2.5) BS01 peptide ? GO:0000245 ... P83876 24781215
    210821 4bwt:A (1.76) BS01 CU ? GO:0005507 ... P80401 N/A
    210822 4bwt:B (1.76) BS01 CU ? GO:0005507 ... P80401 N/A
    210823 4bwu:A (1.76) BS01 CU ? GO:0005507 ... P80401 N/A
    210824 4bwu:B (1.76) BS01 CU ? GO:0005507 ... P80401 N/A
    210825 4bww:A (1.48) BS01 CU ? GO:0005507 ... P00282 24884565
    210826 4bww:B (1.48) BS01 CU ? GO:0005507 ... P00282 24884565
    210827 4bww:C (1.48) BS01 CU ? GO:0005507 ... P00282 24884565
    210828 4bww:D (1.48) BS01 CU ? GO:0005507 ... P00282 24884565
    210829 4bwx:A (2.85) BS01 AGS ? GO:0000289 ... Q7SDP4 23932717
    210830 4bwx:B (2.85) BS01 AGS ? GO:0000289 ... Q7SDP4 23932717
    210831 4bwz:A (2.984) BS01 ZN ? GO:0006812 ... Q72IM4 23995679
    210832 4bx0:A (1.75) BS01 MG 3.1.3.16
    3.1.3.74
    GO:0000287 ... P60487 24338687
    210833 4bx2:A (2.193) BS01 MG 3.1.3.16
    3.1.3.74
    GO:0000287 ... P60487 24338687
    210834 4bx2:A (2.193) BS02 BEF 3.1.3.16
    3.1.3.74
    GO:0000287 ... P60487 24338687
    210835 4bx2:B (2.193) BS01 MG 3.1.3.16
    3.1.3.74
    GO:0000287 ... P60487 24338687
    210836 4bx2:B (2.193) BS02 BEF 3.1.3.16
    3.1.3.74
    GO:0000287 ... P60487 24338687
    210837 4bx3:A (2.193) BS01 MG 3.1.3.16
    3.1.3.74
    GO:0000287 ... P60487 24338687
    210838 4bx3:B (2.193) BS01 MG 3.1.3.16
    3.1.3.74
    GO:0000287 ... P60487 24338687
    210839 4bx7:B (2.26) BS01 B4F ? GO:0009374 ... P22629 24056174
    210840 4bxc:A (2.86) BS01 G6P 4.1.1.31 GO:0005737 ... P30694 24043710
    210841 4bxc:B (2.86) BS01 G6P 4.1.1.31 GO:0005737 ... P30694 24043710
    210842 4bxd:A (3.1) BS01 peptide 3.5.1.28 GO:0008745 ... Q9I5D1 23931161
    210843 4bxd:A (3.1) BS02 ZN 3.5.1.28 GO:0008745 ... Q9I5D1 23931161
    210844 4bxd:B (3.1) BS01 peptide 3.5.1.28 GO:0008745 ... Q9I5D1 23931161
    210845 4bxd:B (3.1) BS02 MAG 3.5.1.28 GO:0008745 ... Q9I5D1 23931161
    210846 4bxd:B (3.1) BS03 ZN 3.5.1.28 GO:0008745 ... Q9I5D1 23931161
    210847 4bxe:A (2.95) BS01 peptide 3.5.1.28 GO:0008745 ... Q9I5D1 23931161
    210848 4bxe:A (2.95) BS02 peptide 3.5.1.28 GO:0008745 ... Q9I5D1 23931161
    210849 4bxe:B (2.95) BS01 peptide 3.5.1.28 GO:0008745 ... Q9I5D1 23931161
    210850 4bxf:A (2.05) BS01 peptide 1.14.11.79 GO:0003714 ... Q8IUF8 24814345
    210851 4bxf:A (2.05) BS02 MN 1.14.11.79 GO:0003714 ... Q8IUF8 24814345
    210852 4bxf:A (2.05) BS03 AKG 1.14.11.79 GO:0003714 ... Q8IUF8 24814345
    210853 4bxf:B (2.05) BS01 peptide 1.14.11.79 GO:0003714 ... Q8IUF8 24814345
    210854 4bxf:B (2.05) BS02 MN 1.14.11.79 GO:0003714 ... Q8IUF8 24814345
    210855 4bxf:B (2.05) BS03 AKG 1.14.11.79 GO:0003714 ... Q8IUF8 24814345
    210856 4bxk:A (2.2) BS01 1IU 3.4.15.1 GO:0006508 ... P12821 24015848 MOAD: Ki=11.21nM
    210857 4bxk:A (2.2) BS02 ZN 3.4.15.1 GO:0006508 ... P12821 24015848
    210858 4bxk:B (2.2) BS01 1IU 3.4.15.1 GO:0006508 ... P12821 24015848 MOAD: Ki=11.21nM
    210859 4bxk:B (2.2) BS02 ZN 3.4.15.1 GO:0006508 ... P12821 24015848
    210860 4bxl:A (-1.00) BS01 peptide N/A GO:0019865 ... N/A 24623599
    210861 4bxl:B (-1.00) BS01 peptide N/A GO:0019865 ... N/A 24623599
    210862 4bxn:A (2.793) BS01 ADP ? GO:0003777 ... P52732 23875972
    210863 4bxn:A (2.793) BS02 6LX ? GO:0003777 ... P52732 23875972 BindingDB: IC50=0.140000nM, Ki=0.500000nM, Kd=>10.0nM
    210864 4bxn:B (2.793) BS01 ADP ? GO:0003777 ... P52732 23875972
    210865 4bxn:B (2.793) BS02 6LX ? GO:0003777 ... P52732 23875972 BindingDB: IC50=0.140000nM, Ki=0.500000nM, Kd=>10.0nM
    210866 4bxo:A (2.15) BS01 CA 3.6.4.13 GO:0003677 ... Q8IYD8 23932590
    210867 4bxo:B (2.15) BS01 dna ? GO:0000785 ... Q9BTP7 23932590
    210868 4bxo:B (2.15) BS02 dna ? GO:0000785 ... Q9BTP7 23932590
    210869 4bxo:B (2.15) BS03 CA ? GO:0000785 ... Q9BTP7 23932590
    210870 4bxo:B (2.15) BS04 CA ? GO:0000785 ... Q9BTP7 23932590
    210871 4bxr:A (2.2) BS01 peptide ? N/A E7FCY1 24052813
    210872 4bxr:B (2.2) BS01 peptide ? N/A E7FCY1 24052813
    210873 4bxs:V (3.32) BS01 MAN ? GO:0004252 ... Q7SZN0 23869089
    210874 4bxs:V (3.32) BS02 CA ? GO:0004252 ... Q7SZN0 23869089
    210875 4bxs:V (3.32) BS03 CA ? GO:0004252 ... Q7SZN0 23869089
    210876 4bxs:V (3.32) BS04 CU ? GO:0004252 ... Q7SZN0 23869089
    210877 4bxu:A (-1.00) BS01 peptide ? GO:0005778 ... O75381 24235149
    210878 4bxv:A (1.76) BS01 CU ? GO:0005507 ... P80401 N/A
    210879 4bxv:B (1.76) BS01 CU ? GO:0005507 ... P80401 N/A
    210880 4bxw:A (2.71) BS01 peptide 3.4.21.6 GO:0004252 ... Q56VR3 23869089
    210881 4bxw:A (2.71) BS02 0GJ 3.4.21.6 GO:0004252 ... Q56VR3 23869089
    210882 4bxw:B (2.71) BS01 peptide 3.4.21.6 GO:0004252 ... Q56VR3 23869089
    210883 4bxw:B (2.71) BS02 0GJ 3.4.21.6 GO:0004252 ... Q56VR3 23869089
    210884 4bxx:A (3.28) BS01 dna 2.7.7.6 GO:0001172 ... P04050 24003114
    210885 4bxx:A (3.28) BS02 rna 2.7.7.6 GO:0001172 ... P04050 24003114
    210886 4bxx:A (3.28) BS03 dna 2.7.7.6 GO:0001172 ... P04050 24003114
    210887 4bxx:A (3.28) BS04 ZN 2.7.7.6 GO:0001172 ... P04050 24003114
    210888 4bxx:A (3.28) BS05 ZN 2.7.7.6 GO:0001172 ... P04050 24003114
    210889 4bxx:A (3.28) BS06 MG 2.7.7.6 GO:0001172 ... P04050 24003114
    210890 4bxx:B (3.28) BS01 rna 2.7.7.6 GO:0001172 ... P08518 24003114
    210891 4bxx:B (3.28) BS02 ZN 2.7.7.6 GO:0001172 ... P08518 24003114
    210892 4bxx:C (3.28) BS01 ZN ? GO:0000428 ... P16370 24003114
    210893 4bxx:I (3.28) BS01 ZN ? GO:0001172 ... P27999 24003114
    210894 4bxx:I (3.28) BS02 ZN ? GO:0001172 ... P27999 24003114
    210895 4bxx:J (3.28) BS01 ZN ? GO:0001172 ... P22139 24003114
    210896 4bxx:L (3.28) BS01 ZN ? GO:0001172 ... P40422 24003114
    210897 4bxz:A (4.8) BS01 ZN 2.7.7.6 GO:0001172 ... P04050 24003114
    210898 4bxz:A (4.8) BS02 ZN 2.7.7.6 GO:0001172 ... P04050 24003114
    210899 4bxz:B (4.8) BS01 ZN 2.7.7.6 GO:0001172 ... P08518 24003114
    210900 4bxz:C (4.8) BS01 ZN 2.7.7.6 GO:0000428 ... P16370 24003114
    210901 4bxz:I (4.8) BS01 ZN 2.7.7.6 GO:0001172 ... P27999 24003114
    210902 4bxz:I (4.8) BS02 ZN 2.7.7.6 GO:0001172 ... P27999 24003114
    210903 4bxz:J (4.8) BS01 ZN 2.7.7.6 GO:0001172 ... P22139 24003114
    210904 4bxz:L (4.8) BS01 ZN 2.7.7.6 GO:0001172 ... P40422 24003114
    210905 4by0:A (3.1) BS01 HEM 1.14.14.154 GO:0004497 ... Q7Z1V1 24900854
    210906 4by0:A (3.1) BS02 5PS 1.14.14.154 GO:0004497 ... Q7Z1V1 24900854
    210907 4by0:B (3.1) BS01 HEM 1.14.14.154 GO:0004497 ... Q7Z1V1 24900854
    210908 4by0:B (3.1) BS02 5PS 1.14.14.154 GO:0004497 ... Q7Z1V1 24900854
    210909 4by1:A (3.6) BS01 dna 2.7.7.6 GO:0001172 ... P04050 24003114
    210910 4by1:A (3.6) BS02 rna 2.7.7.6 GO:0001172 ... P04050 24003114
    210911 4by1:A (3.6) BS03 dna 2.7.7.6 GO:0001172 ... P04050 24003114
    210912 4by1:A (3.6) BS04 ZN 2.7.7.6 GO:0001172 ... P04050 24003114
    210913 4by1:A (3.6) BS05 ZN 2.7.7.6 GO:0001172 ... P04050 24003114
    210914 4by1:A (3.6) BS06 MG 2.7.7.6 GO:0001172 ... P04050 24003114
    210915 4by1:A (3.6) BS07 APC 2.7.7.6 GO:0001172 ... P04050 24003114
    210916 4by1:B (3.6) BS01 rna 2.7.7.6 GO:0003677 ... P08518 24003114
    210917 4by1:B (3.6) BS02 dna 2.7.7.6 GO:0003677 ... P08518 24003114
    210918 4by1:B (3.6) BS03 ZN 2.7.7.6 GO:0003677 ... P08518 24003114
    210919 4by1:B (3.6) BS04 APC 2.7.7.6 GO:0003677 ... P08518 24003114
    210920 4by1:C (3.6) BS01 ZN ? GO:0000428 ... P16370 24003114
    210921 4by1:I (3.6) BS01 ZN ? GO:0001172 ... P27999 24003114
    210922 4by1:I (3.6) BS02 ZN ? GO:0001172 ... P27999 24003114
    210923 4by1:J (3.6) BS01 ZN ? GO:0001172 ... P22139 24003114
    210924 4by3:A (1.73) BS01 ZN 2.1.3.2
    3.5.1.2
    3.5.2.3
    6.3.4.16
    6.3.5.5
    GO:0016787 ... P27708 24332717
    210925 4by3:A (1.73) BS02 ZN 2.1.3.2
    3.5.1.2
    3.5.2.3
    6.3.4.16
    6.3.5.5
    GO:0016787 ... P27708 24332717
    210926 4by3:A (1.73) BS03 ZN 2.1.3.2
    3.5.1.2
    3.5.2.3
    6.3.4.16
    6.3.5.5
    GO:0016787 ... P27708 24332717
    210927 4by4:A (2.3) BS01 CA ? GO:0005509 ... Q9VWX8 25074811
    210928 4by4:A (2.3) BS02 CA ? GO:0005509 ... Q9VWX8 25074811
    210929 4by4:A (2.3) BS03 CA ? GO:0005509 ... Q9VWX8 25074811
    210930 4by4:B (2.3) BS01 CA ? GO:0005509 ... Q9VWX8 25074811
    210931 4by4:B (2.3) BS02 CA ? GO:0005509 ... Q9VWX8 25074811
    210932 4by4:B (2.3) BS03 CA ? GO:0005509 ... Q9VWX8 25074811
    210933 4by5:A (2.22) BS01 CA ? GO:0005509 ... Q9VWX8 25074811
    210934 4by5:A (2.22) BS02 CA ? GO:0005509 ... Q9VWX8 25074811
    210935 4by5:A (2.22) BS03 CA ? GO:0005509 ... Q9VWX8 25074811
    210936 4by5:B (2.22) BS01 CA ? GO:0005509 ... Q9VWX8 25074811
    210937 4by5:B (2.22) BS02 CA ? GO:0005509 ... Q9VWX8 25074811
    210938 4by5:B (2.22) BS03 CA ? GO:0005509 ... Q9VWX8 25074811
    210939 4by5:C (2.22) BS01 CA ? GO:0005509 ... Q9VWX8 25074811
    210940 4by5:C (2.22) BS02 CA ? GO:0005509 ... Q9VWX8 25074811
    210941 4by5:C (2.22) BS03 CA ? GO:0005509 ... Q9VWX8 25074811
    210942 4by5:D (2.22) BS01 CA ? GO:0005509 ... Q9VWX8 25074811
    210943 4by5:D (2.22) BS02 CA ? GO:0005509 ... Q9VWX8 25074811
    210944 4by5:D (2.22) BS03 CA ? GO:0005509 ... Q9VWX8 25074811
    210945 4by6:A (2.797) BS01 CA ? GO:0017148 ... P25655 24121231
    210946 4by6:D (2.797) BS01 CA ? GO:0017148 ... P25655 24121231
    210947 4by7:A (3.15) BS01 dna 2.7.7.6 GO:0001172 ... P04050 24003114
    210948 4by7:A (3.15) BS02 rna 2.7.7.6 GO:0001172 ... P04050 24003114
    210949 4by7:A (3.15) BS03 dna 2.7.7.6 GO:0001172 ... P04050 24003114
    210950 4by7:A (3.15) BS04 ZN 2.7.7.6 GO:0001172 ... P04050 24003114
    210951 4by7:A (3.15) BS05 ZN 2.7.7.6 GO:0001172 ... P04050 24003114
    210952 4by7:A (3.15) BS06 MG 2.7.7.6 GO:0001172 ... P04050 24003114
    210953 4by7:B (3.15) BS01 rna 2.7.7.6 GO:0001172 ... P08518 24003114
    210954 4by7:B (3.15) BS02 dna 2.7.7.6 GO:0001172 ... P08518 24003114
    210955 4by7:B (3.15) BS03 ZN 2.7.7.6 GO:0001172 ... P08518 24003114
    210956 4by7:C (3.15) BS01 ZN ? GO:0000428 ... P16370 24003114
    210957 4by7:I (3.15) BS01 ZN ? GO:0001172 ... P27999 24003114
    210958 4by7:I (3.15) BS02 ZN ? GO:0001172 ... P27999 24003114
    210959 4by7:J (3.15) BS01 ZN ? GO:0001172 ... P22139 24003114
    210960 4by7:L (3.15) BS01 ZN ? GO:0001172 ... P40422 24003114
    210961 4by9:C (-1.00) BS01 rna ? GO:0005515 ... Q8U4M1 24121435
    210962 4by9:C (-1.00) BS02 rna ? GO:0005515 ... Q8U4M1 24121435
    210963 4by9:C (-1.00) BS03 rna ? GO:0005515 ... Q8U4M1 24121435
    210964 4by9:C (-1.00) BS04 rna ? GO:0005515 ... Q8U4M1 24121435
    210965 4by9:D (-1.00) BS01 rna ? GO:0001682 ... Q8U160 24121435
    210966 4by9:E (-1.00) BS01 rna 2.1.1.- GO:0000494 ... Q8U4M2 24121435
    210967 4by9:E (-1.00) BS02 rna 2.1.1.- GO:0000494 ... Q8U4M2 24121435
    210968 4by9:F (-1.00) BS01 rna ? GO:0005515 ... Q8U4M1 24121435
    210969 4by9:F (-1.00) BS02 rna ? GO:0005515 ... Q8U4M1 24121435
    210970 4by9:F (-1.00) BS03 rna ? GO:0005515 ... Q8U4M1 24121435
    210971 4by9:G (-1.00) BS01 rna ? GO:0001682 ... Q8U160 24121435
    210972 4by9:I (-1.00) BS01 rna ? GO:0005515 ... Q8U4M1 24121435
    210973 4by9:I (-1.00) BS02 rna ? GO:0005515 ... Q8U4M1 24121435
    210974 4by9:I (-1.00) BS03 rna ? GO:0005515 ... Q8U4M1 24121435
    210975 4by9:I (-1.00) BS04 rna ? GO:0005515 ... Q8U4M1 24121435
    210976 4by9:J (-1.00) BS01 rna ? GO:0001682 ... Q8U160 24121435
    210977 4by9:K (-1.00) BS01 rna 2.1.1.- GO:0000494 ... Q8U4M2 24121435
    210978 4by9:K (-1.00) BS02 rna 2.1.1.- GO:0000494 ... Q8U4M2 24121435
    210979 4by9:L (-1.00) BS01 rna ? GO:0005515 ... Q8U4M1 24121435
    210980 4by9:L (-1.00) BS02 rna ? GO:0005515 ... Q8U4M1 24121435
    210981 4by9:L (-1.00) BS03 rna ? GO:0005515 ... Q8U4M1 24121435
    210982 4by9:M (-1.00) BS01 rna ? GO:0001682 ... Q8U160 24121435
    210983 4bya:A (-1.00) BS01 CA ? GO:0005509 ... P62149 26555770
    210984 4bya:A (-1.00) BS02 CA ? GO:0005509 ... P62149 26555770
    210985 4byf:A (2.74) BS01 MG 3.6.4.1 GO:0003774 ... O00159 24636949
    210986 4byf:A (2.74) BS02 AOV 3.6.4.1 GO:0003774 ... O00159 24636949
    210987 4byf:C (2.74) BS01 MG 3.6.4.1 GO:0003774 ... O00159 24636949
    210988 4byf:C (2.74) BS02 AOV 3.6.4.1 GO:0003774 ... O00159 24636949
    210989 4byf:D (2.74) BS01 MG ? GO:0000922 ... P0DP23 24636949
    210990 4byg:A (2.85) BS01 ALF 7.2.2.8 GO:0000166 ... Q5ZWR1 N/A
    210991 4byg:A (2.85) BS02 MG 7.2.2.8 GO:0000166 ... Q5ZWR1 N/A
    210992 4byh:A (2.3) BS01 GAL ? N/A P01857 23929778
    210993 4byh:B (2.3) BS01 BMA ? N/A P01857 23929778
    210994 4byh:B (2.3) BS02 GAL ? N/A P01857 23929778
    210995 4byi:A (2.6) BS01 FH3 2.7.11.1 GO:0000212 ... O14965 24195668
    210996 4byj:A (2.75) BS01 FH5 2.7.11.1 GO:0000212 ... O14965 24195668
    210997 4bz1:L (2.15) BS01 ZN N/A N/A N/A N/A
    210998 4bz3:A (1.294) BS01 ZN 3.5.2.6 GO:0008800 ... Q9K2N0 26482303
    210999 4bz3:A (1.294) BS02 ZN 3.5.2.6 GO:0008800 ... Q9K2N0 26482303
    211000 4bz3:B (1.294) BS01 ZN 3.5.2.6 GO:0008800 ... Q9K2N0 26482303

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).