SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    244001 4lfa:D (3.6461) BS01 rna ? GO:0003723 ... P80373 N/A
    244002 4lfa:D (3.6461) BS02 MG ? GO:0003723 ... P80373 N/A
    244003 4lfa:E (3.6461) BS01 rna ? GO:0003723 ... Q5SHQ5 N/A
    244004 4lfa:F (3.6461) BS01 rna ? GO:0003735 ... Q5SLP8 N/A
    244005 4lfa:G (3.6461) BS01 rna ? GO:0000049 ... P17291 N/A
    244006 4lfa:H (3.6461) BS01 rna N/A GO:0003735 ... P0DOY9 N/A
    244007 4lfa:I (3.6461) BS01 rna ? GO:0003723 ... P80374 N/A
    244008 4lfa:J (3.6461) BS01 rna ? GO:0000049 ... Q5SHN7 N/A
    244009 4lfa:K (3.6461) BS01 rna ? GO:0003735 ... P80376 N/A
    244010 4lfa:K (3.6461) BS02 MG ? GO:0003735 ... P80376 N/A
    244011 4lfa:L (3.6461) BS01 rna ? GO:0000049 ... F6DEQ7 N/A
    244012 4lfa:M (3.6461) BS01 rna ? GO:0000049 ... P80377 N/A
    244013 4lfa:M (3.6461) BS02 MG ? GO:0000049 ... P80377 N/A
    244014 4lfa:N (3.6461) BS01 rna N/A GO:0003735 ... P0DOY6 N/A
    244015 4lfa:N (3.6461) BS02 ZN N/A GO:0003735 ... P0DOY6 N/A
    244016 4lfa:O (3.6461) BS01 rna ? GO:0003735 ... Q5SJ76 N/A
    244017 4lfa:P (3.6461) BS01 rna ? GO:0003735 ... Q5SJH3 N/A
    244018 4lfa:Q (3.6461) BS01 rna N/A GO:0003735 ... P0DOY7 N/A
    244019 4lfa:R (3.6461) BS01 rna ? GO:0003735 ... Q5SLQ0 N/A
    244020 4lfa:S (3.6461) BS01 rna ? GO:0000028 ... Q5SHP2 N/A
    244021 4lfa:T (3.6461) BS01 rna ? GO:0003723 ... P80380 N/A
    244022 4lfb:B (3.009) BS01 rna ? GO:0003735 ... P80371 N/A
    244023 4lfb:C (3.009) BS01 rna ? GO:0003676 ... P80372 N/A
    244024 4lfb:D (3.009) BS01 rna ? GO:0003723 ... P80373 N/A
    244025 4lfb:D (3.009) BS02 MG ? GO:0003723 ... P80373 N/A
    244026 4lfb:E (3.009) BS01 rna ? GO:0003723 ... Q5SHQ5 N/A
    244027 4lfb:F (3.009) BS01 rna ? GO:0003735 ... Q5SLP8 N/A
    244028 4lfb:G (3.009) BS01 rna ? GO:0000049 ... P17291 N/A
    244029 4lfb:H (3.009) BS01 rna N/A GO:0003735 ... P0DOY9 N/A
    244030 4lfb:I (3.009) BS01 rna ? GO:0003723 ... P80374 N/A
    244031 4lfb:J (3.009) BS01 rna ? GO:0000049 ... Q5SHN7 N/A
    244032 4lfb:K (3.009) BS01 rna ? GO:0003735 ... P80376 N/A
    244033 4lfb:L (3.009) BS01 rna ? GO:0000049 ... F6DEQ7 N/A
    244034 4lfb:L (3.009) BS02 MG ? GO:0000049 ... F6DEQ7 N/A
    244035 4lfb:L (3.009) BS03 MG ? GO:0000049 ... F6DEQ7 N/A
    244036 4lfb:M (3.009) BS01 rna ? GO:0000049 ... P80377 N/A
    244037 4lfb:M (3.009) BS02 MG ? GO:0000049 ... P80377 N/A
    244038 4lfb:N (3.009) BS01 rna N/A GO:0003735 ... P0DOY6 N/A
    244039 4lfb:N (3.009) BS02 ZN N/A GO:0003735 ... P0DOY6 N/A
    244040 4lfb:O (3.009) BS01 rna ? GO:0003735 ... Q5SJ76 N/A
    244041 4lfb:P (3.009) BS01 rna ? GO:0003735 ... Q5SJH3 N/A
    244042 4lfb:Q (3.009) BS01 rna N/A GO:0003735 ... P0DOY7 N/A
    244043 4lfb:Q (3.009) BS02 MG N/A GO:0003735 ... P0DOY7 N/A
    244044 4lfb:R (3.009) BS01 rna ? GO:0003735 ... Q5SLQ0 N/A
    244045 4lfb:S (3.009) BS01 rna ? GO:0000028 ... Q5SHP2 N/A
    244046 4lfb:T (3.009) BS01 rna ? GO:0003723 ... P80380 N/A
    244047 4lfc:B (3.602) BS01 rna ? GO:0003735 ... P80371 N/A
    244048 4lfc:B (3.602) BS02 MG ? GO:0003735 ... P80371 N/A
    244049 4lfc:C (3.602) BS01 rna ? GO:0003676 ... P80372 N/A
    244050 4lfc:D (3.602) BS01 rna ? GO:0003723 ... P80373 N/A
    244051 4lfc:D (3.602) BS02 MG ? GO:0003723 ... P80373 N/A
    244052 4lfc:E (3.602) BS01 rna ? GO:0003723 ... Q5SHQ5 N/A
    244053 4lfc:F (3.602) BS01 rna ? GO:0003735 ... Q5SLP8 N/A
    244054 4lfc:G (3.602) BS01 rna ? GO:0000049 ... P17291 N/A
    244055 4lfc:H (3.602) BS01 rna N/A GO:0003735 ... P0DOY9 N/A
    244056 4lfc:I (3.602) BS01 rna ? GO:0003723 ... P80374 N/A
    244057 4lfc:J (3.602) BS01 rna ? GO:0000049 ... Q5SHN7 N/A
    244058 4lfc:K (3.602) BS01 rna ? GO:0003735 ... P80376 N/A
    244059 4lfc:K (3.602) BS02 MG ? GO:0003735 ... P80376 N/A
    244060 4lfc:K (3.602) BS03 MG ? GO:0003735 ... P80376 N/A
    244061 4lfc:L (3.602) BS01 rna ? GO:0000049 ... F6DEQ7 N/A
    244062 4lfc:M (3.602) BS01 rna ? GO:0000049 ... P80377 N/A
    244063 4lfc:M (3.602) BS02 MG ? GO:0000049 ... P80377 N/A
    244064 4lfc:N (3.602) BS01 rna N/A GO:0003735 ... P0DOY6 N/A
    244065 4lfc:N (3.602) BS02 ZN N/A GO:0003735 ... P0DOY6 N/A
    244066 4lfc:O (3.602) BS01 rna ? GO:0003735 ... Q5SJ76 N/A
    244067 4lfc:P (3.602) BS01 rna ? GO:0003735 ... Q5SJH3 N/A
    244068 4lfc:Q (3.602) BS01 rna N/A GO:0003735 ... P0DOY7 N/A
    244069 4lfc:Q (3.602) BS02 MG N/A GO:0003735 ... P0DOY7 N/A
    244070 4lfc:R (3.602) BS01 rna ? GO:0003735 ... Q5SLQ0 N/A
    244071 4lfc:S (3.602) BS01 rna ? GO:0000028 ... Q5SHP2 N/A
    244072 4lfc:T (3.602) BS01 rna ? GO:0003723 ... P80380 N/A
    244073 4lfd:A (2.49) BS01 peptide 3.4.22.71 N/A A0A0H2XI76 24519933
    244074 4lfd:B (2.49) BS01 peptide 3.4.22.71 N/A A0A0H2XI76 24519933
    244075 4lfd:C (2.49) BS01 peptide 3.4.22.71 N/A A0A0H2XI76 24519933
    244076 4lfd:D (2.49) BS01 peptide 3.4.22.71 N/A A0A0H2XI76 24519933
    244077 4lfe:A (1.95) BS01 IPE 2.5.1.10 GO:0004337 ... B9DUT7 N/A
    244078 4lfe:A (1.95) BS02 MG 2.5.1.10 GO:0004337 ... B9DUT7 N/A
    244079 4lfe:A (1.95) BS03 MG 2.5.1.10 GO:0004337 ... B9DUT7 N/A
    244080 4lfe:B (1.95) BS01 IPE 2.5.1.10 GO:0004337 ... B9DUT7 N/A
    244081 4lfe:B (1.95) BS02 IPE 2.5.1.10 GO:0004337 ... B9DUT7 N/A
    244082 4lfe:B (1.95) BS03 MG 2.5.1.10 GO:0004337 ... B9DUT7 N/A
    244083 4lfe:B (1.95) BS04 MG 2.5.1.10 GO:0004337 ... B9DUT7 N/A
    244084 4lfg:A (1.76) BS01 IPE 2.5.1.10 GO:0004337 ... B9DUT7 N/A
    244085 4lfg:A (1.76) BS02 IPE 2.5.1.10 GO:0004337 ... B9DUT7 N/A
    244086 4lfg:A (1.76) BS03 MG 2.5.1.10 GO:0004337 ... B9DUT7 N/A
    244087 4lfg:A (1.76) BS04 MG 2.5.1.10 GO:0004337 ... B9DUT7 N/A
    244088 4lfg:A (1.76) BS05 MG 2.5.1.10 GO:0004337 ... B9DUT7 N/A
    244089 4lfg:B (1.76) BS01 IPE 2.5.1.10 GO:0004337 ... B9DUT7 N/A
    244090 4lfg:B (1.76) BS02 IPE 2.5.1.10 GO:0004337 ... B9DUT7 N/A
    244091 4lfg:B (1.76) BS03 MG 2.5.1.10 GO:0004337 ... B9DUT7 N/A
    244092 4lfg:B (1.76) BS04 MG 2.5.1.10 GO:0004337 ... B9DUT7 N/A
    244093 4lfi:A (1.85) BS01 GNP 2.7.11.1 GO:0000028 ... P15790 24531484
    244094 4lfi:A (1.85) BS02 MN 2.7.11.1 GO:0000028 ... P15790 24531484
    244095 4lfi:A (1.85) BS03 SO4 2.7.11.1 GO:0000028 ... P15790 24531484
    244096 4lfi:A (1.85) BS04 SO4 2.7.11.1 GO:0000028 ... P15790 24531484
    244097 4lfi:A (1.85) BS05 SO4 2.7.11.1 GO:0000028 ... P15790 24531484
    244098 4lfi:A (1.85) BS06 SO4 2.7.11.1 GO:0000028 ... P15790 24531484
    244099 4lfi:B (1.85) BS01 GNP 2.7.11.1 GO:0000028 ... P15790 24531484
    244100 4lfi:B (1.85) BS02 MN 2.7.11.1 GO:0000028 ... P15790 24531484
    244101 4lfi:B (1.85) BS03 SO4 2.7.11.1 GO:0000028 ... P15790 24531484
    244102 4lfi:B (1.85) BS04 SO4 2.7.11.1 GO:0000028 ... P15790 24531484
    244103 4lfi:B (1.85) BS05 SO4 2.7.11.1 GO:0000028 ... P15790 24531484
    244104 4lfi:B (1.85) BS06 SO4 2.7.11.1 GO:0000028 ... P15790 24531484
    244105 4lfl:A (1.65) BS01 TG6 N/A GO:0005975 ... N/A 24015281
    244106 4lfl:B (1.65) BS01 TG6 N/A GO:0005975 ... N/A 24015281
    244107 4lfl:C (1.65) BS01 TG6 N/A GO:0005975 ... N/A 24015281
    244108 4lfl:D (1.65) BS01 TG6 N/A GO:0005975 ... N/A 24015281
    244109 4lfm:A (1.65) BS01 PSJ N/A GO:0005975 ... N/A 24015281
    244110 4lfm:B (1.65) BS01 PSJ N/A GO:0005975 ... N/A 24015281
    244111 4lfm:C (1.65) BS01 PSJ N/A GO:0005975 ... N/A 24015281
    244112 4lfm:D (1.65) BS01 PSJ N/A GO:0005975 ... N/A 24015281
    244113 4lfn:A (1.65) BS01 RBL N/A GO:0005975 ... N/A 24015281
    244114 4lfn:B (1.65) BS01 RBL N/A GO:0005975 ... N/A 24015281
    244115 4lfn:C (1.65) BS01 RBL N/A GO:0005975 ... N/A 24015281
    244116 4lfn:D (1.65) BS01 RBL N/A GO:0005975 ... N/A 24015281
    244117 4lfv:F (2.0) BS01 YS4 2.5.1.1
    2.5.1.10
    GO:0004659 ... P14324 24598914 BindingDB: IC50=28nM
    244118 4lfv:F (2.0) BS02 PO4 2.5.1.1
    2.5.1.10
    GO:0004659 ... P14324 24598914
    244119 4lfv:F (2.0) BS03 PO4 2.5.1.1
    2.5.1.10
    GO:0004659 ... P14324 24598914
    244120 4lfv:F (2.0) BS04 MG 2.5.1.1
    2.5.1.10
    GO:0004659 ... P14324 24598914
    244121 4lfv:F (2.0) BS05 MG 2.5.1.1
    2.5.1.10
    GO:0004659 ... P14324 24598914
    244122 4lfy:A (1.8) BS01 ZN 3.5.2.3 GO:0004151 ... B4EEU0 N/A
    244123 4lfy:A (1.8) BS02 ZN 3.5.2.3 GO:0004151 ... B4EEU0 N/A
    244124 4lfy:A (1.8) BS03 CA 3.5.2.3 GO:0004151 ... B4EEU0 N/A
    244125 4lfy:A (1.8) BS04 CA 3.5.2.3 GO:0004151 ... B4EEU0 N/A
    244126 4lfy:B (1.8) BS01 CA 3.5.2.3 GO:0004151 ... B4EEU0 N/A
    244127 4lfy:B (1.8) BS02 ZN 3.5.2.3 GO:0004151 ... B4EEU0 N/A
    244128 4lfy:B (1.8) BS03 ZN 3.5.2.3 GO:0004151 ... B4EEU0 N/A
    244129 4lfy:B (1.8) BS04 CA 3.5.2.3 GO:0004151 ... B4EEU0 N/A
    244130 4lfz:QB (3.92) BS01 rna ? GO:0003735 ... P80371 25128388
    244131 4lfz:QC (3.92) BS01 rna ? GO:0003676 ... P80372 25128388
    244132 4lfz:QD (3.92) BS01 rna ? GO:0003723 ... P80373 25128388
    244133 4lfz:QD (3.92) BS02 ZN ? GO:0003723 ... P80373 25128388
    244134 4lfz:QE (3.92) BS01 rna ? GO:0003723 ... Q5SHQ5 25128388
    244135 4lfz:QF (3.92) BS01 rna ? GO:0003735 ... Q5SLP8 25128388
    244136 4lfz:QG (3.92) BS01 rna ? GO:0000049 ... P17291 25128388
    244137 4lfz:QH (3.92) BS01 rna N/A GO:0003735 ... P0DOY9 25128388
    244138 4lfz:QH (3.92) BS02 MG N/A GO:0003735 ... P0DOY9 25128388
    244139 4lfz:QI (3.92) BS01 rna ? GO:0003723 ... P80374 25128388
    244140 4lfz:QI (3.92) BS02 rna ? GO:0003723 ... P80374 25128388
    244141 4lfz:QJ (3.92) BS01 rna ? GO:0000049 ... Q5SHN7 25128388
    244142 4lfz:QK (3.92) BS01 rna ? GO:0003735 ... P80376 25128388
    244143 4lfz:QL (3.92) BS01 rna ? GO:0000049 ... Q5SHN3 25128388
    244144 4lfz:QM (3.92) BS01 rna ? GO:0000049 ... P80377 25128388
    244145 4lfz:QM (3.92) BS02 rna ? GO:0000049 ... P80377 25128388
    244146 4lfz:QM (3.92) BS03 MG ? GO:0000049 ... P80377 25128388
    244147 4lfz:QN (3.92) BS01 rna N/A GO:0003735 ... P0DOY6 25128388
    244148 4lfz:QN (3.92) BS02 ZN N/A GO:0003735 ... P0DOY6 25128388
    244149 4lfz:QO (3.92) BS01 rna ? GO:0003735 ... Q5SJ76 25128388
    244150 4lfz:QO (3.92) BS02 rna ? GO:0003735 ... Q5SJ76 25128388
    244151 4lfz:QP (3.92) BS01 rna ? GO:0003735 ... Q5SJH3 25128388
    244152 4lfz:QQ (3.92) BS01 rna N/A GO:0003735 ... P0DOY7 25128388
    244153 4lfz:QR (3.92) BS01 rna ? GO:0003735 ... Q5SLQ0 25128388
    244154 4lfz:QS (3.92) BS01 rna ? GO:0000028 ... Q5SHP2 25128388
    244155 4lfz:QT (3.92) BS01 rna ? GO:0003723 ... P80380 25128388
    244156 4lfz:R0 (3.92) BS01 rna ? GO:0003735 ... P60493 25128388
    244157 4lfz:R0 (3.92) BS02 rna ? GO:0003735 ... P60493 25128388
    244158 4lfz:R1 (3.92) BS01 rna ? GO:0003735 ... P60494 25128388
    244159 4lfz:R2 (3.92) BS01 rna ? GO:0003735 ... Q5SHP6 25128388
    244160 4lfz:R3 (3.92) BS01 rna ? GO:0003735 ... Q5SHQ6 25128388
    244161 4lfz:R4 (3.92) BS01 rna ? GO:0003735 ... Q5SJE1 25128388
    244162 4lfz:R5 (3.92) BS01 rna ? GO:0003735 ... P80339 25128388
    244163 4lfz:R6 (3.92) BS01 rna ? GO:0003735 ... P35871 25128388
    244164 4lfz:R7 (3.92) BS01 rna ? GO:0003735 ... P80340 25128388
    244165 4lfz:R8 (3.92) BS01 rna ? GO:0003735 ... Q5SKU1 25128388
    244166 4lfz:R9 (3.92) BS01 rna ? GO:0003735 ... Q5SHR2 25128388
    244167 4lfz:RD (3.92) BS01 rna ? GO:0002181 ... P60405 25128388
    244168 4lfz:RD (3.92) BS02 rna ? GO:0002181 ... P60405 25128388
    244169 4lfz:RD (3.92) BS03 MG ? GO:0002181 ... P60405 25128388
    244170 4lfz:RD (3.92) BS04 MG ? GO:0002181 ... P60405 25128388
    244171 4lfz:RE (3.92) BS01 rna ? GO:0003735 ... Q5SHN8 25128388
    244172 4lfz:RF (3.92) BS01 rna ? GO:0003735 ... Q5SHN9 25128388
    244173 4lfz:RF (3.92) BS02 MG ? GO:0003735 ... Q5SHN9 25128388
    244174 4lfz:RG (3.92) BS01 rna ? GO:0000049 ... Q5SHQ0 25128388
    244175 4lfz:RG (3.92) BS02 rna ? GO:0000049 ... Q5SHQ0 25128388
    244176 4lfz:RH (3.92) BS01 rna N/A GO:0002181 ... P0DOY8 25128388
    244177 4lfz:RI (3.92) BS01 rna ? GO:0003735 ... Q5SLQ1 25128388
    244178 4lfz:RN (3.92) BS01 rna ? GO:0003729 ... P60488 25128388
    244179 4lfz:RO (3.92) BS01 rna ? GO:0003735 ... Q5SHP8 25128388
    244180 4lfz:RO (3.92) BS02 rna ? GO:0003735 ... Q5SHP8 25128388
    244181 4lfz:RP (3.92) BS01 rna ? GO:0003735 ... Q5SHQ7 25128388
    244182 4lfz:RQ (3.92) BS01 rna ? GO:0003735 ... P60489 25128388
    244183 4lfz:RR (3.92) BS01 rna ? GO:0003735 ... Q9Z9H5 25128388
    244184 4lfz:RS (3.92) BS01 rna ? GO:0003735 ... Q5SHQ4 25128388
    244185 4lfz:RS (3.92) BS02 rna ? GO:0003735 ... Q5SHQ4 25128388
    244186 4lfz:RT (3.92) BS01 rna ? GO:0003735 ... P60490 25128388
    244187 4lfz:RT (3.92) BS02 rna ? GO:0003735 ... P60490 25128388
    244188 4lfz:RU (3.92) BS01 rna ? GO:0000027 ... P60491 25128388
    244189 4lfz:RV (3.92) BS01 rna ? GO:0003723 ... P60492 25128388
    244190 4lfz:RW (3.92) BS01 rna ? GO:0003735 ... Q5SHP3 25128388
    244191 4lfz:RX (3.92) BS01 rna ? GO:0003735 ... Q5SHP0 25128388
    244192 4lfz:RY (3.92) BS01 rna ? GO:0003723 ... Q5SHP9 25128388
    244193 4lfz:RZ (3.92) BS01 rna ? GO:0003723 ... Q5SHZ1 25128388
    244194 4lfz:RZ (3.92) BS02 rna ? GO:0003723 ... Q5SHZ1 25128388
    244195 4lfz:XB (3.92) BS01 rna ? GO:0003735 ... P80371 25128388
    244196 4lfz:XC (3.92) BS01 rna ? GO:0003676 ... P80372 25128388
    244197 4lfz:XD (3.92) BS01 rna ? GO:0003723 ... P80373 25128388
    244198 4lfz:XD (3.92) BS02 ZN ? GO:0003723 ... P80373 25128388
    244199 4lfz:XE (3.92) BS01 rna ? GO:0003723 ... Q5SHQ5 25128388
    244200 4lfz:XF (3.92) BS01 rna ? GO:0003735 ... Q5SLP8 25128388

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).