SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    25801 1js4:A (2.0) BS03 BGC 3.2.1.4 GO:0004553 ... P26221 9334746
    25802 1js4:A (2.0) BS04 CA 3.2.1.4 GO:0004553 ... P26221 9334746
    25803 1js4:A (2.0) BS05 CA 3.2.1.4 GO:0004553 ... P26221 9334746
    25804 1js4:B (2.0) BS01 BGC 3.2.1.4 GO:0004553 ... P26221 9334746
    25805 1js4:B (2.0) BS02 BGC 3.2.1.4 GO:0004553 ... P26221 9334746
    25806 1js4:B (2.0) BS03 BGC 3.2.1.4 GO:0004553 ... P26221 9334746
    25807 1js4:B (2.0) BS04 CA 3.2.1.4 GO:0004553 ... P26221 9334746
    25808 1js4:B (2.0) BS05 CA 3.2.1.4 GO:0004553 ... P26221 9334746
    25809 1js6:A (2.6) BS01 PLP 4.1.1.28 GO:0004058 ... P80041 11685243
    25810 1js6:B (2.6) BS01 PLP 4.1.1.28 GO:0004058 ... P80041 11685243
    25811 1js8:A (2.3) BS01 MAN ? GO:0016491 ... O61363 9614947
    25812 1js8:A (2.3) BS02 MAN ? GO:0016491 ... O61363 9614947
    25813 1js8:A (2.3) BS03 CUO ? GO:0016491 ... O61363 9614947
    25814 1js8:B (2.3) BS01 MAN ? GO:0016491 ... O61363 9614947
    25815 1js8:B (2.3) BS02 MAN ? GO:0016491 ... O61363 9614947
    25816 1js8:B (2.3) BS03 CUO ? GO:0016491 ... O61363 9614947
    25817 1jsa:A (-1.00) BS01 CA ? GO:0001750 ... P21457 9296500
    25818 1jsa:A (-1.00) BS02 CA ? GO:0001750 ... P21457 9296500
    25819 1jsc:A (2.6) BS01 MG 2.2.1.6 GO:0000287 ... P07342 11902841
    25820 1jsc:A (2.6) BS02 2HP 2.2.1.6 GO:0000287 ... P07342 11902841
    25821 1jsc:A (2.6) BS03 TPP 2.2.1.6 GO:0000287 ... P07342 11902841
    25822 1jsc:A (2.6) BS04 FAD 2.2.1.6 GO:0000287 ... P07342 11902841
    25823 1jsc:A (2.6) BS05 TPP 2.2.1.6 GO:0000287 ... P07342 11902841
    25824 1jsc:B (2.6) BS01 TPP 2.2.1.6 GO:0000287 ... P07342 11902841
    25825 1jsc:B (2.6) BS02 MG 2.2.1.6 GO:0000287 ... P07342 11902841
    25826 1jsc:B (2.6) BS03 2HP 2.2.1.6 GO:0000287 ... P07342 11902841
    25827 1jsc:B (2.6) BS04 2HP 2.2.1.6 GO:0000287 ... P07342 11902841
    25828 1jsc:B (2.6) BS05 TPP 2.2.1.6 GO:0000287 ... P07342 11902841
    25829 1jsc:B (2.6) BS06 FAD 2.2.1.6 GO:0000287 ... P07342 11902841
    25830 1jse:A (1.12) BS01 POL 3.2.1.17 GO:0003796 ... P00703 9517539
    25831 1jsh:A (2.4) BS01 GAL ? GO:0019031 ... Q91CD4 11562490
    25832 1jsh:A (2.4) BS02 SIA ? GO:0019031 ... Q91CD4 11562490
    25833 1jsi:A (2.4) BS01 GLC ? GO:0019031 ... Q91CD4 11562490
    25834 1jsi:A (2.4) BS02 GAL ? GO:0019031 ... Q91CD4 11562490
    25835 1jsi:A (2.4) BS03 SIA ? GO:0019031 ... Q91CD4 11562490
    25836 1jsl:A (1.7) BS01 DDO 3.5.1.1 GO:0004067 ... P06608 11755201
    25837 1jsl:B (1.7) BS01 DDO 3.5.1.1 GO:0004067 ... P06608 11755201
    25838 1jsl:C (1.7) BS01 DDO 3.5.1.1 GO:0004067 ... P06608 11755201
    25839 1jsl:D (1.7) BS01 DDO 3.5.1.1 GO:0004067 ... P06608 11755201
    25840 1jsn:A (2.4) BS01 SIA ? GO:0019031 ... A5Z226 11562490
    25841 1jso:A (2.4) BS01 SIA ? GO:0019031 ... A5Z226 11562490
    25842 1jsp:B (-1.00) BS01 peptide 2.3.1.-
    2.3.1.48
    N/A Q92793 14759370
    25843 1jsr:A (1.7) BS01 LDO 3.5.1.1 GO:0004067 ... P06608 11755201
    25844 1jsr:B (1.7) BS01 LDO 3.5.1.1 GO:0004067 ... P06608 11755201
    25845 1jsr:C (1.7) BS01 LDO 3.5.1.1 GO:0004067 ... P06608 11755201
    25846 1jsr:D (1.7) BS01 LDO 3.5.1.1 GO:0004067 ... P06608 11755201
    25847 1jst:A (2.6) BS01 MN 2.7.11.22 GO:0000082 ... P24941 8756328
    25848 1jst:A (2.6) BS02 ATP 2.7.11.22 GO:0000082 ... P24941 8756328
    25849 1jst:C (2.6) BS01 MN 2.7.11.22 GO:0000082 ... P24941 8756328
    25850 1jst:C (2.6) BS02 ATP 2.7.11.22 GO:0000082 ... P24941 8756328
    25851 1jsv:A (1.96) BS01 U55 2.7.11.22 GO:0000082 ... P24941 11604388 BindingDB: IC50=1900nM
    25852 1jsz:A (1.93) BS01 SAH 2.1.1.57 GO:0003723 ... P07617 12056899
    25853 1jsz:A (1.93) BS02 NDM 2.1.1.57 GO:0003723 ... P07617 12056899
    25854 1jt0:A (2.9) BS01 dna ? GO:0003677 ... P0A0N4 11867549
    25855 1jt0:A (2.9) BS02 dna ? GO:0003677 ... P0A0N4 11867549
    25856 1jt0:B (2.9) BS01 dna ? GO:0003677 ... P0A0N4 11867549
    25857 1jt0:B (2.9) BS02 dna ? GO:0003677 ... P0A0N4 11867549
    25858 1jt0:C (2.9) BS01 dna ? GO:0003677 ... P0A0N4 11867549
    25859 1jt0:C (2.9) BS02 dna ? GO:0003677 ... P0A0N4 11867549
    25860 1jt0:D (2.9) BS01 dna ? GO:0003677 ... P0A0N4 11867549
    25861 1jt0:D (2.9) BS02 dna ? GO:0003677 ... P0A0N4 11867549
    25862 1jt1:A () BS01 ZN 3.5.2.6 N/A N/A N/A
    25863 1jt1:A () BS02 ZN 3.5.2.6 N/A N/A N/A
    25864 1jt1:A () BS03 MCO 3.5.2.6 N/A N/A N/A MOAD: Ki=400uM
    25865 1jt2:A (1.8) BS01 FER 3.2.1.8 N/A P10478 11601976
    25866 1jt6:A (2.54) BS01 DEQ ? GO:0003677 ... P0A0N4 11739955
    25867 1jt6:B (2.54) BS01 DEQ ? GO:0003677 ... P0A0N4 11739955
    25868 1jtb:A (-1.00) BS01 COA ? GO:0006869 ... P07597 9032083
    25869 1jtb:A (-1.00) BS02 PLM ? GO:0006869 ... P07597 9032083
    25870 1jtd:B (2.3) BS01 CA ? GO:0061630 ... O87916 11573088
    25871 1jtd:B (2.3) BS02 CA ? GO:0061630 ... O87916 11573088
    25872 1jte:A (2.0) BS01 SAH 2.1.1.57 GO:0003723 ... P07617 12056899
    25873 1jtf:A (2.6) BS01 SAH 2.1.1.57 GO:0003723 ... P07617 12056899
    25874 1jtf:A (2.6) BS02 M7G 2.1.1.57 GO:0003723 ... P07617 12056899
    25875 1jtg:B (1.73) BS01 CA ? GO:0005515 ... P35804 11573088
    25876 1jtg:D (1.73) BS01 CA ? GO:0005515 ... P35804 11573088
    25877 1jtk:A (2.04) BS01 ZN 3.5.4.5 GO:0004126 ... P19079 11851403
    25878 1jtk:A (2.04) BS02 THU 3.5.4.5 GO:0004126 ... P19079 11851403
    25879 1jtk:B (2.04) BS01 ZN 3.5.4.5 GO:0004126 ... P19079 11851403
    25880 1jtk:B (2.04) BS02 THU 3.5.4.5 GO:0004126 ... P19079 11851403
    25881 1jtq:A (2.5) BS01 UMP 2.1.1.45 GO:0000287 ... P0A884 11697906
    25882 1jtq:A (2.5) BS02 LY3 2.1.1.45 GO:0000287 ... P0A884 11697906
    25883 1jtq:A (2.5) BS03 UMP 2.1.1.45 GO:0000287 ... P0A884 11697906
    25884 1jtq:B (2.5) BS01 UMP 2.1.1.45 GO:0000287 ... P0A884 11697906
    25885 1jtq:B (2.5) BS02 UMP 2.1.1.45 GO:0000287 ... P0A884 11697906
    25886 1jtq:B (2.5) BS03 LY3 2.1.1.45 GO:0000287 ... P0A884 11697906
    25887 1jtu:A (2.2) BS01 UMP 2.1.1.45 GO:0000287 ... P0A884 11697906
    25888 1jtu:A (2.2) BS02 LYB 2.1.1.45 GO:0000287 ... P0A884 11697906
    25889 1jtu:A (2.2) BS03 UMP 2.1.1.45 GO:0000287 ... P0A884 11697906
    25890 1jtu:B (2.2) BS01 UMP 2.1.1.45 GO:0000287 ... P0A884 11697906
    25891 1jtu:B (2.2) BS02 UMP 2.1.1.45 GO:0000287 ... P0A884 11697906
    25892 1jtu:B (2.2) BS03 LYB 2.1.1.45 GO:0000287 ... P0A884 11697906
    25893 1jtv:A (1.54) BS01 TES 1.1.1.51
    1.1.1.62
    GO:0004303 ... P14061 12490543
    25894 1jtx:A (2.85) BS01 CVI ? GO:0003677 ... P0A0N4 11739955
    25895 1jty:A (2.97) BS01 ET ? GO:0003677 ... P0A0N4 11739955
    25896 1ju2:A (1.47) BS01 FAD 4.1.2.10 GO:0016614 ... Q945K2 11566130
    25897 1ju2:B (1.47) BS01 FAD 4.1.2.10 GO:0016614 ... Q945K2 11566130
    25898 1ju3:A (1.58) BS01 PBC 3.1.1.84 GO:0005737 ... Q9L9D7 11742345
    25899 1ju5:A (-1.00) BS01 peptide ? N/A P46108 12384576
    25900 1ju6:A (2.89) BS01 UMP 2.1.1.45 GO:0000900 ... P04818 11697906
    25901 1ju6:A (2.89) BS02 LYA 2.1.1.45 GO:0000900 ... P04818 11697906 BindingDB: IC50=9500nM, Ki=1.3nM
    25902 1ju6:A (2.89) BS03 UMP 2.1.1.45 GO:0000900 ... P04818 11697906
    25903 1ju6:B (2.89) BS01 UMP 2.1.1.45 GO:0000900 ... P04818 11697906
    25904 1ju6:B (2.89) BS02 UMP 2.1.1.45 GO:0000900 ... P04818 11697906
    25905 1ju6:B (2.89) BS03 LYA 2.1.1.45 GO:0000900 ... P04818 11697906 BindingDB: IC50=9500nM, Ki=1.3nM
    25906 1ju6:C (2.89) BS01 UMP 2.1.1.45 GO:0000900 ... P04818 11697906
    25907 1ju6:C (2.89) BS02 LYA 2.1.1.45 GO:0000900 ... P04818 11697906 BindingDB: IC50=9500nM, Ki=1.3nM
    25908 1ju6:C (2.89) BS03 UMP 2.1.1.45 GO:0000900 ... P04818 11697906
    25909 1ju6:D (2.89) BS01 UMP 2.1.1.45 GO:0000900 ... P04818 11697906
    25910 1ju6:D (2.89) BS02 UMP 2.1.1.45 GO:0000900 ... P04818 11697906
    25911 1ju6:D (2.89) BS03 LYA 2.1.1.45 GO:0000900 ... P04818 11697906 BindingDB: IC50=9500nM, Ki=1.3nM
    25912 1ju9:A (2.0) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 11601993
    25913 1ju9:A (2.0) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 11601993
    25914 1ju9:A (2.0) BS03 NAD 1.1.1.1 GO:0004022 ... P00327 11601993 MOAD: Ki=1640uM
    25915 1ju9:B (2.0) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 11601993
    25916 1ju9:B (2.0) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 11601993
    25917 1ju9:B (2.0) BS03 NAD 1.1.1.1 GO:0004022 ... P00327 11601993 MOAD: Ki=1640uM
    25918 1jub:A (1.4) BS01 MG 1.3.98.1 GO:0004152 ... A2RJT9 12732650
    25919 1jub:A (1.4) BS02 FMN 1.3.98.1 GO:0004152 ... A2RJT9 12732650
    25920 1jub:B (1.4) BS01 MG 1.3.98.1 GO:0004152 ... A2RJT9 12732650
    25921 1jub:B (1.4) BS02 FMN 1.3.98.1 GO:0004152 ... A2RJT9 12732650
    25922 1jue:A (1.8) BS01 MG 1.3.98.1 GO:0004152 ... A2RJT9 12732650
    25923 1jue:A (1.8) BS02 FMN 1.3.98.1 GO:0004152 ... A2RJT9 12732650
    25924 1jue:B (1.8) BS01 MG 1.3.98.1 GO:0004152 ... A2RJT9 12732650
    25925 1jue:B (1.8) BS02 FMN 1.3.98.1 GO:0004152 ... A2RJT9 12732650
    25926 1juf:A (2.0) BS01 peptide ? N/A P01899 11751972
    25927 1jug:A (1.9) BS01 CA 3.2.1.17 GO:0003796 ... P37156 15299900
    25928 1juh:A (1.6) BS01 CU 1.13.11.24 GO:0008127 ... Q7SIC2 11839311
    25929 1juh:B (1.6) BS01 CU 1.13.11.24 GO:0008127 ... Q7SIC2 11839311
    25930 1juh:C (1.6) BS01 CU 1.13.11.24 GO:0008127 ... Q7SIC2 11839311
    25931 1juh:D (1.6) BS01 CU 1.13.11.24 GO:0008127 ... Q7SIC2 11839311
    25932 1jui:A (2.75) BS01 peptide ? GO:0030246 ... P55915 11371463
    25933 1jui:A (2.75) BS02 MN ? GO:0030246 ... P55915 11371463
    25934 1jui:A (2.75) BS03 CA ? GO:0030246 ... P55915 11371463
    25935 1jui:B (2.75) BS01 peptide ? GO:0030246 ... P55915 11371463
    25936 1jui:B (2.75) BS02 MN ? GO:0030246 ... P55915 11371463
    25937 1jui:B (2.75) BS03 CA ? GO:0030246 ... P55915 11371463
    25938 1jui:C (2.75) BS01 peptide ? GO:0030246 ... P55915 11371463
    25939 1jui:C (2.75) BS02 MN ? GO:0030246 ... P55915 11371463
    25940 1jui:C (2.75) BS03 CA ? GO:0030246 ... P55915 11371463
    25941 1jui:D (2.75) BS01 peptide ? GO:0030246 ... P55915 11371463
    25942 1jui:D (2.75) BS02 MN ? GO:0030246 ... P55915 11371463
    25943 1jui:D (2.75) BS03 CA ? GO:0030246 ... P55915 11371463
    25944 1juj:A (3.0) BS01 UMP 2.1.1.45 GO:0000900 ... P04818 11697906
    25945 1juj:A (3.0) BS02 LYA 2.1.1.45 GO:0000900 ... P04818 11697906 BindingDB: IC50=9500nM, Ki=1.3nM
    25946 1juj:A (3.0) BS03 UMP 2.1.1.45 GO:0000900 ... P04818 11697906
    25947 1juj:B (3.0) BS01 UMP 2.1.1.45 GO:0000900 ... P04818 11697906
    25948 1juj:B (3.0) BS02 UMP 2.1.1.45 GO:0000900 ... P04818 11697906
    25949 1juj:B (3.0) BS03 LYA 2.1.1.45 GO:0000900 ... P04818 11697906 BindingDB: IC50=9500nM, Ki=1.3nM
    25950 1juj:C (3.0) BS01 UMP 2.1.1.45 GO:0000900 ... P04818 11697906
    25951 1juj:C (3.0) BS02 LYA 2.1.1.45 GO:0000900 ... P04818 11697906 BindingDB: IC50=9500nM, Ki=1.3nM
    25952 1juj:C (3.0) BS03 UMP 2.1.1.45 GO:0000900 ... P04818 11697906
    25953 1juj:D (3.0) BS01 UMP 2.1.1.45 GO:0000900 ... P04818 11697906
    25954 1juj:D (3.0) BS02 UMP 2.1.1.45 GO:0000900 ... P04818 11697906
    25955 1juj:D (3.0) BS03 LYA 2.1.1.45 GO:0000900 ... P04818 11697906 BindingDB: IC50=9500nM, Ki=1.3nM
    25956 1juk:A (2.5) BS01 SO4 4.1.1.48 GO:0000162 ... Q06121 8893859
    25957 1jum:A (2.98) BS01 BER ? GO:0003677 ... P0A0N4 11739955
    25958 1jup:A (2.95) BS01 MGR ? GO:0003677 ... P0A0N4 11739955
    25959 1juq:A (2.2) BS01 peptide ? GO:0005802 ... Q9NZ52 11859375
    25960 1juq:B (2.2) BS01 peptide ? GO:0005802 ... Q9NZ52 11859375
    25961 1juq:C (2.2) BS01 peptide ? GO:0005802 ... Q9NZ52 11859375
    25962 1juq:D (2.2) BS01 peptide ? GO:0005802 ... Q9NZ52 11859375
    25963 1jus:A (2.84) BS01 RHQ ? GO:0003677 ... P0A0N4 11739955
    25964 1jut:A (2.7) BS01 UMP 2.1.1.45 GO:0000287 ... P0A884 11697906
    25965 1jut:A (2.7) BS02 LYD 2.1.1.45 GO:0000287 ... P0A884 11697906
    25966 1jut:A (2.7) BS03 UMP 2.1.1.45 GO:0000287 ... P0A884 11697906
    25967 1jut:B (2.7) BS01 UMP 2.1.1.45 GO:0000287 ... P0A884 11697906
    25968 1jut:B (2.7) BS02 UMP 2.1.1.45 GO:0000287 ... P0A884 11697906
    25969 1jut:B (2.7) BS03 LYD 2.1.1.45 GO:0000287 ... P0A884 11697906
    25970 1juv:A (1.7) BS01 NDP 1.5.1.3 GO:0004146 ... P04382 N/A
    25971 1juy:A (2.5) BS01 MG 6.3.4.4 GO:0000166 ... P0A7D4 8961938
    25972 1juy:A (2.5) BS02 GDP 6.3.4.4 GO:0000166 ... P0A7D4 8961938
    25973 1juy:A (2.5) BS03 H5P 6.3.4.4 GO:0000166 ... P0A7D4 8961938
    25974 1juy:A (2.5) BS04 HDA 6.3.4.4 GO:0000166 ... P0A7D4 8961938
    25975 1jv0:A (2.0) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00915 12009884
    25976 1jv0:A (2.0) BS02 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00915 12009884
    25977 1jv0:B (2.0) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00915 12009884
    25978 1jv0:B (2.0) BS02 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00915 12009884
    25979 1jv1:A (1.9) BS01 UD1 2.7.4.-
    2.7.7.23
    2.7.7.83
    GO:0003977 ... Q16222 11707391
    25980 1jv1:B (1.9) BS01 UD1 2.7.4.-
    2.7.7.23
    2.7.7.83
    GO:0003977 ... Q16222 11707391
    25981 1jv2:A (3.1) BS01 CA ? GO:0001525 ... P06756 11546839
    25982 1jv2:A (3.1) BS02 CA ? GO:0001525 ... P06756 11546839
    25983 1jv2:A (3.1) BS03 CA ? GO:0001525 ... P06756 11546839
    25984 1jv2:A (3.1) BS04 CA ? GO:0001525 ... P06756 11546839
    25985 1jv2:A (3.1) BS05 CA ? GO:0001525 ... P06756 11546839
    25986 1jv2:B (3.1) BS01 CA ? GO:0001525 ... P05106 11546839
    25987 1jv3:A (2.2) BS01 UD2 2.7.4.-
    2.7.7.23
    2.7.7.83
    GO:0003977 ... Q16222 11707391
    25988 1jv3:B (2.2) BS01 UD2 2.7.4.-
    2.7.7.23
    2.7.7.83
    GO:0003977 ... Q16222 11707391
    25989 1jv4:A (1.75) BS01 TZL ? GO:0003674 ... P11589 11717500
    25990 1jv6:A (2.0) BS01 RET ? GO:0005886 ... P02945 11676543
    25991 1jv7:A (2.25) BS01 RET ? GO:0005216 ... P02945 11676543
    25992 1jvb:A (1.85) BS01 ZN 1.1.1.1 GO:0004022 ... P39462 12051852
    25993 1jvb:A (1.85) BS02 ZN 1.1.1.1 GO:0004022 ... P39462 12051852
    25994 1jvd:A (2.4) BS01 UD1 2.7.4.-
    2.7.7.23
    2.7.7.83
    GO:0003977 ... Q16222 11707391
    25995 1jvd:B (2.4) BS01 UD1 2.7.4.-
    2.7.7.23
    2.7.7.83
    GO:0003977 ... Q16222 11707391
    25996 1jvg:A (2.3) BS01 UD2 2.7.4.-
    2.7.7.23
    2.7.7.83
    GO:0003977 ... Q16222 11707391
    25997 1jvg:B (2.3) BS01 UD2 2.7.4.-
    2.7.7.23
    2.7.7.83
    GO:0003977 ... Q16222 11707391
    25998 1jvi:A (2.2) BS01 ZN 4.4.1.21 GO:0005506 ... O34667 11601850
    25999 1jvi:A (2.2) BS02 RHC 4.4.1.21 GO:0005506 ... O34667 11601850
    26000 1jvj:A (1.73) BS01 IM2 3.5.2.6 GO:0005515 ... P62593 11870868

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).