SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    263601 4r1q:B (2.248) BS01 SST 5.3.1.4 GO:0005737 ... Q5KYP7 N/A
    263602 4r1q:B (2.248) BS02 MN 5.3.1.4 GO:0005737 ... Q5KYP7 N/A
    263603 4r1q:B (2.248) BS03 SST 5.3.1.4 GO:0005737 ... Q5KYP7 N/A
    263604 4r1q:C (2.248) BS01 SST 5.3.1.4 GO:0005737 ... Q5KYP7 N/A
    263605 4r1q:C (2.248) BS02 SST 5.3.1.4 GO:0005737 ... Q5KYP7 N/A
    263606 4r1q:C (2.248) BS03 MN 5.3.1.4 GO:0005737 ... Q5KYP7 N/A
    263607 4r1q:D (2.248) BS01 SST 5.3.1.4 GO:0005737 ... Q5KYP7 N/A
    263608 4r1q:D (2.248) BS02 MN 5.3.1.4 GO:0005737 ... Q5KYP7 N/A
    263609 4r1q:D (2.248) BS03 SST 5.3.1.4 GO:0005737 ... Q5KYP7 N/A
    263610 4r1q:E (2.248) BS01 SST 5.3.1.4 GO:0005737 ... Q5KYP7 N/A
    263611 4r1q:E (2.248) BS02 SST 5.3.1.4 GO:0005737 ... Q5KYP7 N/A
    263612 4r1q:E (2.248) BS03 MN 5.3.1.4 GO:0005737 ... Q5KYP7 N/A
    263613 4r1q:F (2.248) BS01 SST 5.3.1.4 GO:0005737 ... Q5KYP7 N/A
    263614 4r1q:F (2.248) BS02 SST 5.3.1.4 GO:0005737 ... Q5KYP7 N/A
    263615 4r1q:F (2.248) BS03 MN 5.3.1.4 GO:0005737 ... Q5KYP7 N/A
    263616 4r1r:A (3.2) BS01 peptide 1.17.4.1 GO:0004748 ... P00452 9309223
    263617 4r1r:A (3.2) BS02 peptide 1.17.4.1 GO:0004748 ... P00452 9309223
    263618 4r1r:A (3.2) BS03 TTP 1.17.4.1 GO:0004748 ... P00452 9309223
    263619 4r1r:A (3.2) BS04 GDP 1.17.4.1 GO:0004748 ... P00452 9309223
    263620 4r1r:B (3.2) BS01 peptide 1.17.4.1 GO:0004748 ... P00452 9309223
    263621 4r1r:B (3.2) BS02 TTP 1.17.4.1 GO:0004748 ... P00452 9309223
    263622 4r1r:B (3.2) BS03 GDP 1.17.4.1 GO:0004748 ... P00452 9309223
    263623 4r1r:C (3.2) BS01 peptide 1.17.4.1 GO:0004748 ... P00452 9309223
    263624 4r1r:C (3.2) BS02 peptide 1.17.4.1 GO:0004748 ... P00452 9309223
    263625 4r1r:C (3.2) BS03 TTP 1.17.4.1 GO:0004748 ... P00452 9309223
    263626 4r1r:C (3.2) BS04 GDP 1.17.4.1 GO:0004748 ... P00452 9309223
    263627 4r1s:A (1.6) BS01 NAP 1.2.1.44 GO:0005737 ... A0A059TC02 25217505
    263628 4r1s:B (1.6) BS01 NAP 1.2.1.44 GO:0005737 ... A0A059TC02 25217505
    263629 4r1v:A (1.2) BS01 3E8 2.7.10.1 GO:0004672 ... P08581 25736998 MOAD: ic50<1nM
    BindingDB: IC50=<100nM
    263630 4r1v:A (1.2) BS02 GBL 2.7.10.1 GO:0004672 ... P08581 25736998
    263631 4r1v:A (1.2) BS03 GBL 2.7.10.1 GO:0004672 ... P08581 25736998
    263632 4r1v:A (1.2) BS04 GBL 2.7.10.1 GO:0004672 ... P08581 25736998
    263633 4r1y:A (2.0) BS01 3EH 2.7.10.1 GO:0004672 ... P08581 25736998 MOAD: ic50=400nM
    BindingDB: IC50=400nM
    263634 4r1z:A (3.3) BS01 HEM 1.14.14.19
    1.14.14.32
    GO:0004497 ... B3DH80 25533464
    263635 4r1z:A (3.3) BS02 AER 1.14.14.19
    1.14.14.32
    GO:0004497 ... B3DH80 25533464
    263636 4r1z:B (3.3) BS01 HEM 1.14.14.19
    1.14.14.32
    GO:0004497 ... B3DH80 25533464
    263637 4r1z:B (3.3) BS02 AER 1.14.14.19
    1.14.14.32
    GO:0004497 ... B3DH80 25533464
    263638 4r20:A (2.86) BS01 HEM ? GO:0004497 ... A7U483 25533464
    263639 4r20:A (2.86) BS02 AER ? GO:0004497 ... A7U483 25533464
    263640 4r20:B (2.86) BS01 HEM ? GO:0004497 ... A7U483 25533464
    263641 4r20:B (2.86) BS02 AER ? GO:0004497 ... A7U483 25533464
    263642 4r21:A (2.7) BS01 HEM ? GO:0004497 ... A7U483 25533464
    263643 4r21:A (2.7) BS02 STR ? GO:0004497 ... A7U483 25533464
    263644 4r21:B (2.7) BS01 HEM ? GO:0004497 ... A7U483 25533464
    263645 4r21:B (2.7) BS02 STR ? GO:0004497 ... A7U483 25533464
    263646 4r22:B (2.6) BS01 dna ? GO:0003677 ... G2RUZ1 25691471
    263647 4r23:A (1.84) BS01 DXU 2.4.1.129 GO:0008658 ... C8W8H7 N/A
    263648 4r23:B (1.84) BS01 DXU 2.4.1.129 GO:0008658 ... C8W8H7 N/A
    263649 4r24:B (2.25) BS01 dna ? GO:0003677 ... G2RUZ1 25691471
    263650 4r25:A (2.5193) BS01 ZN ? GO:0005524 ... Q07428 25691471
    263651 4r28:C (3.055) BS01 dna ? GO:0003676 ... A0A0J9X157 25262349
    263652 4r28:C (3.055) BS02 dna ? GO:0003676 ... A0A0J9X157 25262349
    263653 4r29:A (2.31) BS01 SAM 2.1.1.- GO:0005576 ... Q7DBA6 25412445
    263654 4r29:B (2.31) BS01 SAM 2.1.1.- GO:0005576 ... Q7DBA6 25412445
    263655 4r29:C (2.31) BS01 SAM 2.1.1.- GO:0005576 ... Q7DBA6 25412445
    263656 4r29:D (2.31) BS01 SAM 2.1.1.- GO:0005576 ... Q7DBA6 25412445
    263657 4r2a:A (1.591) BS01 dna ? N/A P18146 25258363
    263658 4r2a:A (1.591) BS02 dna ? N/A P18146 25258363
    263659 4r2a:A (1.591) BS03 ZN ? N/A P18146 25258363
    263660 4r2a:A (1.591) BS04 ZN ? N/A P18146 25258363
    263661 4r2a:A (1.591) BS05 ZN ? N/A P18146 25258363
    263662 4r2b:A (1.87) BS01 GLC ? GO:0042597 ... A6X5L9 N/A
    263663 4r2b:B (1.87) BS01 GLC ? GO:0042597 ... A6X5L9 N/A
    263664 4r2c:A (1.89) BS01 dna ? N/A P18146 25258363
    263665 4r2c:A (1.89) BS02 dna ? N/A P18146 25258363
    263666 4r2c:A (1.89) BS03 ZN ? N/A P18146 25258363
    263667 4r2c:A (1.89) BS04 ZN ? N/A P18146 25258363
    263668 4r2c:A (1.89) BS05 ZN ? N/A P18146 25258363
    263669 4r2d:A (2.088) BS01 dna ? N/A P18146 25258363
    263670 4r2d:A (2.088) BS02 dna ? N/A P18146 25258363
    263671 4r2d:A (2.088) BS03 ZN ? N/A P18146 25258363
    263672 4r2d:A (2.088) BS04 ZN ? N/A P18146 25258363
    263673 4r2d:A (2.088) BS05 ZN ? N/A P18146 25258363
    263674 4r2e:A (1.84) BS01 dna ? N/A P19544 25258363
    263675 4r2e:A (1.84) BS02 dna ? N/A P19544 25258363
    263676 4r2e:A (1.84) BS03 ZN ? N/A P19544 25258363
    263677 4r2e:A (1.84) BS04 ZN ? N/A P19544 25258363
    263678 4r2e:A (1.84) BS05 ZN ? N/A P19544 25258363
    263679 4r2f:A (2.0) BS01 BGC ? N/A B8H997 N/A
    263680 4r2f:A (2.0) BS02 BGC ? N/A B8H997 N/A
    263681 4r2g:C (3.283) BS01 MAN ? GO:0002250 ... P0DOY3 25259921
    263682 4r2g:I (3.283) BS01 MAN ? GO:0002250 ... P0DOY3 25259921
    263683 4r2g:I (3.283) BS02 MAN ? GO:0002250 ... P0DOY3 25259921
    263684 4r2g:M (3.283) BS01 MAN ? GO:0002250 ... P0DOY3 25259921
    263685 4r2g:M (3.283) BS02 MAN ? GO:0002250 ... P0DOY3 25259921
    263686 4r2g:P (3.283) BS01 MAN ? GO:0002250 ... P0DOY3 25259921
    263687 4r2h:A (1.96) BS01 ZN ? GO:0046872 ... Q6Q0J1 26699645
    263688 4r2i:A (2.05) BS01 ZN ? GO:0046872 ... Q6Q0J1 26699645
    263689 4r2i:A (2.05) BS02 ANP ? GO:0046872 ... Q6Q0J1 26699645
    263690 4r2j:A (2.36) BS01 ZN ? GO:0005737 ... Q8ZP84 25600413
    263691 4r2j:A (2.36) BS02 PO4 ? GO:0005737 ... Q8ZP84 25600413
    263692 4r2j:A (2.36) BS03 GLC ? GO:0005737 ... Q8ZP84 25600413
    263693 4r2j:A (2.36) BS04 GLC ? GO:0005737 ... Q8ZP84 25600413
    263694 4r2l:A (1.8) BS01 ATP ? N/A P67091 25600413
    263695 4r2l:B (1.8) BS01 ATP ? N/A P67091 25600413
    263696 4r2m:A (2.2) BS01 ANP ? N/A P67091 25600413
    263697 4r2m:B (2.2) BS01 ANP ? N/A P67091 25600413
    263698 4r2n:A (1.98) BS01 PLP 2.6.1.- GO:0000105 ... P9WML5 26738801
    263699 4r2n:A (1.98) BS02 PHE 2.6.1.- GO:0000105 ... P9WML5 26738801
    263700 4r2n:A (1.98) BS03 PHE 2.6.1.- GO:0000105 ... P9WML5 26738801
    263701 4r2n:B (1.98) BS01 PLP 2.6.1.- GO:0000105 ... P9WML5 26738801
    263702 4r2n:B (1.98) BS02 PHE 2.6.1.- GO:0000105 ... P9WML5 26738801
    263703 4r2n:B (1.98) BS03 PHE 2.6.1.- GO:0000105 ... P9WML5 26738801
    263704 4r2n:C (1.98) BS01 PHE 2.6.1.- GO:0000105 ... P9WML5 26738801
    263705 4r2n:C (1.98) BS02 PLP 2.6.1.- GO:0000105 ... P9WML5 26738801
    263706 4r2n:C (1.98) BS03 PHE 2.6.1.- GO:0000105 ... P9WML5 26738801
    263707 4r2n:D (1.98) BS01 PHE 2.6.1.- GO:0000105 ... P9WML5 26738801
    263708 4r2n:D (1.98) BS02 PLP 2.6.1.- GO:0000105 ... P9WML5 26738801
    263709 4r2n:D (1.98) BS03 PHE 2.6.1.- GO:0000105 ... P9WML5 26738801
    263710 4r2p:A (1.788) BS01 dna ? N/A P19544 25258363
    263711 4r2p:A (1.788) BS02 dna ? N/A P19544 25258363
    263712 4r2p:A (1.788) BS03 ZN ? N/A P19544 25258363
    263713 4r2p:A (1.788) BS04 ZN ? N/A P19544 25258363
    263714 4r2p:A (1.788) BS05 ZN ? N/A P19544 25258363
    263715 4r2q:A (1.54) BS01 dna ? N/A P19544 25258363
    263716 4r2q:A (1.54) BS02 dna ? N/A P19544 25258363
    263717 4r2q:A (1.54) BS03 ZN ? N/A P19544 25258363
    263718 4r2q:A (1.54) BS04 ZN ? N/A P19544 25258363
    263719 4r2q:A (1.54) BS05 ZN ? N/A P19544 25258363
    263720 4r2r:A (2.089) BS01 dna ? N/A P19544 25258363
    263721 4r2r:A (2.089) BS02 dna ? N/A P19544 25258363
    263722 4r2r:A (2.089) BS03 ZN ? N/A P19544 25258363
    263723 4r2r:A (2.089) BS04 ZN ? N/A P19544 25258363
    263724 4r2r:A (2.089) BS05 ZN ? N/A P19544 25258363
    263725 4r2s:A (2.489) BS01 dna ? N/A P19544 25258363
    263726 4r2s:A (2.489) BS02 ZN ? N/A P19544 25258363
    263727 4r2s:A (2.489) BS03 ZN ? N/A P19544 25258363
    263728 4r2s:A (2.489) BS04 ZN ? N/A P19544 25258363
    263729 4r2u:A (2.3) BS01 3JX ? GO:0003677 ... P37231 26068133 BindingDB: IC50=80nM, EC50=4288nM
    263730 4r2u:D (2.3) BS01 3JX ? GO:0003677 ... P37231 26068133 BindingDB: IC50=80nM, EC50=4288nM
    263731 4r2w:A (1.6) BS01 SO4 2.4.2.3 GO:0003824 ... Q8E9X9 25478848
    263732 4r2w:A (1.6) BS02 GOL 2.4.2.3 GO:0003824 ... Q8E9X9 25478848
    263733 4r2w:B (1.6) BS01 SO4 2.4.2.3 GO:0003824 ... Q8E9X9 25478848
    263734 4r2w:C (1.6) BS01 SO4 2.4.2.3 GO:0003824 ... Q8E9X9 25478848
    263735 4r2w:C (1.6) BS02 GOL 2.4.2.3 GO:0003824 ... Q8E9X9 25478848
    263736 4r2w:D (1.6) BS01 SO4 2.4.2.3 GO:0003824 ... Q8E9X9 25478848
    263737 4r2w:D (1.6) BS02 GOL 2.4.2.3 GO:0003824 ... Q8E9X9 25478848
    263738 4r2w:D (1.6) BS03 GOL 2.4.2.3 GO:0003824 ... Q8E9X9 25478848
    263739 4r2w:E (1.6) BS01 SO4 2.4.2.3 GO:0003824 ... Q8E9X9 25478848
    263740 4r2w:F (1.6) BS01 URI 2.4.2.3 GO:0003824 ... Q8E9X9 25478848
    263741 4r2w:F (1.6) BS02 SO4 2.4.2.3 GO:0003824 ... Q8E9X9 25478848
    263742 4r2w:F (1.6) BS03 GOL 2.4.2.3 GO:0003824 ... Q8E9X9 25478848
    263743 4r2x:A (0.93) BS01 SO4 2.4.2.3 GO:0003824 ... Q8E9X9 25478848
    263744 4r2x:B (0.93) BS01 SO4 2.4.2.3 GO:0003824 ... Q8E9X9 25478848
    263745 4r2x:C (0.93) BS01 SO4 2.4.2.3 GO:0003824 ... Q8E9X9 25478848
    263746 4r2x:D (0.93) BS01 SO4 2.4.2.3 GO:0003824 ... Q8E9X9 25478848
    263747 4r2x:E (0.93) BS01 SO4 2.4.2.3 GO:0003824 ... Q8E9X9 25478848
    263748 4r2x:F (0.93) BS01 SO4 2.4.2.3 GO:0003824 ... Q8E9X9 25478848
    263749 4r2y:A (1.755) BS01 ZN ? GO:0005680 ... Q9NYG5 25306923
    263750 4r2y:A (1.755) BS02 ZN ? GO:0005680 ... Q9NYG5 25306923
    263751 4r2y:A (1.755) BS03 ZN ? GO:0005680 ... Q9NYG5 25306923
    263752 4r2y:A (1.755) BS04 ZN ? GO:0005680 ... Q9NYG5 25306923
    263753 4r2y:B (1.755) BS01 ZN ? GO:0005680 ... Q9NYG5 25306923
    263754 4r2y:B (1.755) BS02 ZN ? GO:0005680 ... Q9NYG5 25306923
    263755 4r2y:B (1.755) BS03 ZN ? GO:0005680 ... Q9NYG5 25306923
    263756 4r2y:B (1.755) BS04 ZN ? GO:0005680 ... Q9NYG5 25306923
    263757 4r2y:C (1.755) BS01 ZN ? GO:0005680 ... Q9NYG5 25306923
    263758 4r2y:C (1.755) BS02 ZN ? GO:0005680 ... Q9NYG5 25306923
    263759 4r2y:C (1.755) BS03 ZN ? GO:0005680 ... Q9NYG5 25306923
    263760 4r2y:C (1.755) BS04 ZN ? GO:0005680 ... Q9NYG5 25306923
    263761 4r2y:D (1.755) BS01 ZN ? GO:0005680 ... Q9NYG5 25306923
    263762 4r2y:D (1.755) BS02 ZN ? GO:0005680 ... Q9NYG5 25306923
    263763 4r2y:D (1.755) BS03 ZN ? GO:0005680 ... Q9NYG5 25306923
    263764 4r2y:D (1.755) BS04 ZN ? GO:0005680 ... Q9NYG5 25306923
    263765 4r32:A (3.505) BS01 peptide 2.7.10.2 GO:0004713 ... Q14289 25174335
    263766 4r32:A (3.505) BS02 peptide 2.7.10.2 GO:0004713 ... Q14289 25174335
    263767 4r33:A (1.78) BS01 SAH ? GO:0003824 ... C6FX51 25196319
    263768 4r33:A (1.78) BS02 SF4 ? GO:0003824 ... C6FX51 25196319
    263769 4r33:A (1.78) BS03 TRP ? GO:0003824 ... C6FX51 25196319
    263770 4r33:B (1.78) BS01 SAH ? GO:0003824 ... C6FX51 25196319
    263771 4r33:B (1.78) BS02 SF4 ? GO:0003824 ... C6FX51 25196319
    263772 4r33:B (1.78) BS03 TRP ? GO:0003824 ... C6FX51 25196319
    263773 4r34:A (1.8) BS01 MET ? GO:0003824 ... C6FX51 25196319
    263774 4r34:A (1.8) BS02 SAH ? GO:0003824 ... C6FX51 25196319
    263775 4r34:A (1.8) BS03 SF4 ? GO:0003824 ... C6FX51 25196319
    263776 4r34:A (1.8) BS04 TRP ? GO:0003824 ... C6FX51 25196319
    263777 4r34:B (1.8) BS01 MET ? GO:0003824 ... C6FX51 25196319
    263778 4r34:B (1.8) BS02 SAH ? GO:0003824 ... C6FX51 25196319
    263779 4r34:B (1.8) BS03 SF4 ? GO:0003824 ... C6FX51 25196319
    263780 4r34:B (1.8) BS04 TRP ? GO:0003824 ... C6FX51 25196319
    263781 4r34:B (1.8) BS05 ZN ? GO:0003824 ... C6FX51 25196319
    263782 4r37:A (1.9) BS01 UD1 2.3.1.129 GO:0008610 ... Q5LH16 25945572
    263783 4r38:A (1.6) BS01 RBF 2.7.13.3 N/A Q2NB77 25468971
    263784 4r38:B (1.6) BS01 RBF 2.7.13.3 N/A Q2NB77 25468971
    263785 4r38:C (1.6) BS01 RBF 2.7.13.3 N/A Q2NB77 25468971
    263786 4r38:D (1.6) BS01 RBF 2.7.13.3 N/A Q2NB77 25468971
    263787 4r39:A (2.603) BS01 ANP 2.7.13.3 GO:0016310 ... Q2NB77 25468971
    263788 4r39:B (2.603) BS01 ANP 2.7.13.3 GO:0016310 ... Q2NB77 25468971
    263789 4r39:C (2.603) BS01 ANP 2.7.13.3 GO:0016310 ... Q2NB77 25468971
    263790 4r39:D (2.603) BS01 ANP 2.7.13.3 GO:0016310 ... Q2NB77 25468971
    263791 4r3a:A (2.92) BS01 ANP 2.7.13.3 GO:0004673 ... Q2NB77 25468971
    263792 4r3a:A (2.92) BS02 RBF 2.7.13.3 GO:0004673 ... Q2NB77 25468971
    263793 4r3a:B (2.92) BS01 ANP 2.7.13.3 GO:0004673 ... Q2NB77 25468971
    263794 4r3a:B (2.92) BS02 RBF 2.7.13.3 GO:0004673 ... Q2NB77 25468971
    263795 4r3b:A (1.366) BS01 MA4 3.5.2.6 GO:0008800 ... P0AD64 25536850
    263796 4r3b:A (1.366) BS02 3GE 3.5.2.6 GO:0008800 ... P0AD64 25536850
    263797 4r3b:A (1.366) BS03 MA4 3.5.2.6 GO:0008800 ... P0AD64 25536850
    263798 4r3c:A (2.06) BS01 GG5 2.7.11.24 GO:0000165 ... Q16539 25676389 BindingDB: Ki=600nM, IC50=67nM
    263799 4r3c:A (2.06) BS02 3GF 2.7.11.24 GO:0000165 ... Q16539 25676389 BindingDB: Ki=100nM, IC50=230nM
    263800 4r3c:A (2.06) BS03 3GF 2.7.11.24 GO:0000165 ... Q16539 25676389 BindingDB: Ki=100nM, IC50=230nM

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).