SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    27801 1kfl:D (2.8) BS03 PEP 2.5.1.54 GO:0003849 ... P0AB91 12126632
    27802 1kfl:E (2.8) BS01 MN 2.5.1.54 GO:0003849 ... P0AB91 12126632
    27803 1kfl:E (2.8) BS02 PHE 2.5.1.54 GO:0003849 ... P0AB91 12126632
    27804 1kfl:E (2.8) BS03 PEP 2.5.1.54 GO:0003849 ... P0AB91 12126632
    27805 1kfl:E (2.8) BS04 PHE 2.5.1.54 GO:0003849 ... P0AB91 12126632
    27806 1kfl:F (2.8) BS01 MN 2.5.1.54 GO:0003849 ... P0AB91 12126632
    27807 1kfl:F (2.8) BS02 PHE 2.5.1.54 GO:0003849 ... P0AB91 12126632
    27808 1kfl:F (2.8) BS03 PEP 2.5.1.54 GO:0003849 ... P0AB91 12126632
    27809 1kfl:G (2.8) BS01 MN 2.5.1.54 GO:0003849 ... P0AB91 12126632
    27810 1kfl:G (2.8) BS02 PHE 2.5.1.54 GO:0003849 ... P0AB91 12126632
    27811 1kfl:G (2.8) BS03 PEP 2.5.1.54 GO:0003849 ... P0AB91 12126632
    27812 1kfl:H (2.8) BS01 PHE 2.5.1.54 GO:0003849 ... P0AB91 12126632
    27813 1kfl:H (2.8) BS02 MN 2.5.1.54 GO:0003849 ... P0AB91 12126632
    27814 1kfl:H (2.8) BS03 PHE 2.5.1.54 GO:0003849 ... P0AB91 12126632
    27815 1kfl:H (2.8) BS04 PEP 2.5.1.54 GO:0003849 ... P0AB91 12126632
    27816 1kfq:A (2.4) BS01 CA 5.4.2.2 GO:0000287 ... P47244 11779235
    27817 1kfq:B (2.4) BS01 CA 5.4.2.2 GO:0000287 ... P47244 11779235
    27818 1kfr:A (1.85) BS01 HEM ? GO:0005506 ... P80721 11914507
    27819 1kfs:A (2.1) BS01 dna 2.7.7.7 GO:0003676 ... P00582 9514742
    27820 1kfs:A (2.1) BS02 ZN 2.7.7.7 GO:0003676 ... P00582 9514742
    27821 1kfs:A (2.1) BS03 ZN 2.7.7.7 GO:0003676 ... P00582 9514742
    27822 1kfv:A (2.55) BS01 dna 3.2.2.23
    4.2.99.18
    GO:0003676 ... P42371 12065399
    27823 1kfv:A (2.55) BS02 dna 3.2.2.23
    4.2.99.18
    GO:0003676 ... P42371 12065399
    27824 1kfv:A (2.55) BS03 ZN 3.2.2.23
    4.2.99.18
    GO:0003676 ... P42371 12065399
    27825 1kfv:B (2.55) BS01 dna 3.2.2.23
    4.2.99.18
    GO:0003676 ... P42371 12065399
    27826 1kfv:B (2.55) BS02 dna 3.2.2.23
    4.2.99.18
    GO:0003676 ... P42371 12065399
    27827 1kfv:B (2.55) BS03 ZN 3.2.2.23
    4.2.99.18
    GO:0003676 ... P42371 12065399
    27828 1kfy:A (3.6) BS01 OAA 1.3.5.1 GO:0000104 ... P00363 11850430
    27829 1kfy:A (3.6) BS02 FAD 1.3.5.1 GO:0000104 ... P00363 11850430
    27830 1kfy:B (3.6) BS01 FES 1.3.5.1 GO:0005515 ... P0AC47 11850430
    27831 1kfy:B (3.6) BS02 F3S 1.3.5.1 GO:0005515 ... P0AC47 11850430
    27832 1kfy:B (3.6) BS03 SF4 1.3.5.1 GO:0005515 ... P0AC47 11850430
    27833 1kfy:B (3.6) BS04 BRS 1.3.5.1 GO:0005515 ... P0AC47 11850430
    27834 1kfy:C (3.6) BS01 BRS ? GO:0000104 ... P0A8Q0 11850430
    27835 1kfy:D (3.6) BS01 BRS ? GO:0000104 ... P0A8Q3 11850430
    27836 1kfy:M (3.6) BS01 OAA 1.3.5.1 GO:0000104 ... P00363 11850430
    27837 1kfy:M (3.6) BS02 FAD 1.3.5.1 GO:0000104 ... P00363 11850430
    27838 1kfy:N (3.6) BS01 FES 1.3.5.1 GO:0005515 ... P0AC47 11850430
    27839 1kfy:N (3.6) BS02 F3S 1.3.5.1 GO:0005515 ... P0AC47 11850430
    27840 1kfy:N (3.6) BS03 SF4 1.3.5.1 GO:0005515 ... P0AC47 11850430
    27841 1kfy:N (3.6) BS04 BRS 1.3.5.1 GO:0005515 ... P0AC47 11850430
    27842 1kfy:O (3.6) BS01 BRS ? GO:0000104 ... P0A8Q0 11850430
    27843 1kfy:P (3.6) BS01 BRS ? GO:0000104 ... P0A8Q3 11850430
    27844 1kg0:A (2.65) BS01 peptide ? GO:0006955 ... P01903 11864610
    27845 1kg0:B (2.65) BS01 peptide ? GO:0006955 ... P01911 11864610
    27846 1kg2:A (1.2) BS01 SF4 3.2.2.31 GO:0003677 ... P17802 N/A
    27847 1kg3:A (1.55) BS01 SF4 3.2.2.31 GO:0003677 ... P17802 N/A
    27848 1kg4:A (1.6) BS01 SF4 3.2.2.31 GO:0003677 ... P17802 N/A
    27849 1kg5:A (1.35) BS01 SF4 3.2.2.31 GO:0003677 ... P17802 N/A
    27850 1kg6:A (1.5) BS01 SF4 3.2.2.31 GO:0003677 ... P17802 N/A
    27851 1kg7:A (1.5) BS01 SF4 3.2.2.31 GO:0003677 ... P17802 N/A
    27852 1kg8:A (2.0) BS01 RET ? GO:0005216 ... P02945 11721006
    27853 1kg9:A (1.81) BS01 RET ? GO:0005216 ... P02945 11721006
    27854 1kgb:A (1.65) BS01 RET ? GO:0005216 ... P02945 11721006
    27855 1kgg:A (2.3) BS01 SO4 3.5.2.6 GO:0008800 ... P00807 10436083
    27856 1kgi:A (1.8) BS01 T4A ? GO:0001523 ... P02767 11995998
    27857 1kgi:B (1.8) BS01 T4A ? GO:0001523 ... P02767 11995998
    27858 1kgi:C (1.8) BS01 T4A ? GO:0001523 ... P02767 11995998
    27859 1kgi:D (1.8) BS01 T4A ? GO:0001523 ... P02767 11995998
    27860 1kgj:A (2.3) BS01 FL8 ? GO:0001523 ... P02767 11995999
    27861 1kgj:B (2.3) BS01 FL8 ? GO:0001523 ... P02767 11995999
    27862 1kgj:C (2.3) BS01 FL8 ? GO:0001523 ... P02767 11995999
    27863 1kgj:D (2.3) BS01 FL8 ? GO:0001523 ... P02767 11995999
    27864 1kgl:A (-1.00) BS01 RTL ? GO:0002138 ... P02696 11934897
    27865 1kgn:A (1.85) BS01 FE 1.17.4.1 GO:0004748 ... O69274 11802741
    27866 1kgn:A (1.85) BS02 FE 1.17.4.1 GO:0004748 ... O69274 11802741
    27867 1kgn:B (1.85) BS01 FE 1.17.4.1 GO:0004748 ... O69274 11802741
    27868 1kgn:B (1.85) BS02 FE 1.17.4.1 GO:0004748 ... O69274 11802741
    27869 1kgn:C (1.85) BS01 FE 1.17.4.1 GO:0004748 ... O69274 11802741
    27870 1kgn:C (1.85) BS02 FE 1.17.4.1 GO:0004748 ... O69274 11802741
    27871 1kgn:D (1.85) BS01 FE 1.17.4.1 GO:0004748 ... O69274 11802741
    27872 1kgn:D (1.85) BS02 FE 1.17.4.1 GO:0004748 ... O69274 11802741
    27873 1kgo:A (2.25) BS01 FE2 1.17.4.1 GO:0004748 ... O69274 11802741
    27874 1kgo:A (2.25) BS02 FE2 1.17.4.1 GO:0004748 ... O69274 11802741
    27875 1kgo:B (2.25) BS01 FE2 1.17.4.1 GO:0004748 ... O69274 11802741
    27876 1kgo:B (2.25) BS02 FE2 1.17.4.1 GO:0004748 ... O69274 11802741
    27877 1kgo:C (2.25) BS01 FE2 1.17.4.1 GO:0004748 ... O69274 11802741
    27878 1kgo:C (2.25) BS02 FE2 1.17.4.1 GO:0004748 ... O69274 11802741
    27879 1kgo:D (2.25) BS01 FE2 1.17.4.1 GO:0004748 ... O69274 11802741
    27880 1kgo:D (2.25) BS02 FE2 1.17.4.1 GO:0004748 ... O69274 11802741
    27881 1kgp:A (2.0) BS01 MN 1.17.4.1 GO:0004748 ... O69274 11802741
    27882 1kgp:A (2.0) BS02 MN 1.17.4.1 GO:0004748 ... O69274 11802741
    27883 1kgp:B (2.0) BS01 MN 1.17.4.1 GO:0004748 ... O69274 11802741
    27884 1kgp:B (2.0) BS02 MN 1.17.4.1 GO:0004748 ... O69274 11802741
    27885 1kgp:C (2.0) BS01 MN 1.17.4.1 GO:0004748 ... O69274 11802741
    27886 1kgp:C (2.0) BS02 MN 1.17.4.1 GO:0004748 ... O69274 11802741
    27887 1kgp:C (2.0) BS03 MN 1.17.4.1 GO:0004748 ... O69274 11802741
    27888 1kgp:D (2.0) BS01 MN 1.17.4.1 GO:0004748 ... O69274 11802741
    27889 1kgp:D (2.0) BS02 MN 1.17.4.1 GO:0004748 ... O69274 11802741
    27890 1kgq:A (2.0) BS01 NPI 2.3.1.117 GO:0005737 ... P56220 11910040
    27891 1kgq:A (2.0) BS02 SCO 2.3.1.117 GO:0005737 ... P56220 11910040
    27892 1kgt:A (2.3) BS01 PML 2.3.1.117 GO:0005737 ... P56220 11910040
    27893 1kgt:A (2.3) BS02 SCA 2.3.1.117 GO:0005737 ... P56220 11910040
    27894 1kgu:A (2.0) BS01 CA 3.2.1.1 GO:0003824 ... P04746 11772019
    27895 1kgw:A (2.1) BS01 CA 3.2.1.1 GO:0003824 ... P04746 11772019
    27896 1kgx:A (2.0) BS01 CA 3.2.1.1 GO:0003824 ... P04746 11772019
    27897 1kgz:A (2.4) BS01 MN 2.4.2.18 GO:0000162 ... Q8VP84 12123839
    27898 1kgz:A (2.4) BS02 MN 2.4.2.18 GO:0000162 ... Q8VP84 12123839
    27899 1kgz:A (2.4) BS03 PRP 2.4.2.18 GO:0000162 ... Q8VP84 12123839
    27900 1kgz:B (2.4) BS01 MN 2.4.2.18 GO:0000162 ... Q8VP84 12123839
    27901 1kgz:B (2.4) BS02 MN 2.4.2.18 GO:0000162 ... Q8VP84 12123839
    27902 1kgz:B (2.4) BS03 PRP 2.4.2.18 GO:0000162 ... Q8VP84 12123839
    27903 1kh2:A (2.3) BS01 ATP 6.3.4.5 GO:0000050 ... P59846 11844799
    27904 1kh2:B (2.3) BS01 ATP 6.3.4.5 GO:0000050 ... P59846 11844799
    27905 1kh2:C (2.3) BS01 ATP 6.3.4.5 GO:0000050 ... P59846 11844799
    27906 1kh2:D (2.3) BS01 ATP 6.3.4.5 GO:0000050 ... P59846 11844799
    27907 1kh3:A (2.15) BS01 ANP 6.3.4.5 GO:0000050 ... P59846 12684518
    27908 1kh3:A (2.15) BS02 ARG 6.3.4.5 GO:0000050 ... P59846 12684518
    27909 1kh3:A (2.15) BS03 ASP 6.3.4.5 GO:0000050 ... P59846 12684518
    27910 1kh3:B (2.15) BS01 ARG 6.3.4.5 GO:0000050 ... P59846 12684518
    27911 1kh3:B (2.15) BS02 ASP 6.3.4.5 GO:0000050 ... P59846 12684518
    27912 1kh3:B (2.15) BS03 ANP 6.3.4.5 GO:0000050 ... P59846 12684518
    27913 1kh3:C (2.15) BS01 ARG 6.3.4.5 GO:0000050 ... P59846 12684518
    27914 1kh3:C (2.15) BS02 ASP 6.3.4.5 GO:0000050 ... P59846 12684518
    27915 1kh3:C (2.15) BS03 ANP 6.3.4.5 GO:0000050 ... P59846 12684518
    27916 1kh3:D (2.15) BS01 ARG 6.3.4.5 GO:0000050 ... P59846 12684518
    27917 1kh3:D (2.15) BS02 ASP 6.3.4.5 GO:0000050 ... P59846 12684518
    27918 1kh3:D (2.15) BS03 ANP 6.3.4.5 GO:0000050 ... P59846 12684518
    27919 1kh4:A (2.4) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    27920 1kh4:A (2.4) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    27921 1kh4:A (2.4) BS03 MG 3.1.3.1 GO:0000287 ... P00634 11884134
    27922 1kh4:A (2.4) BS04 PO4 3.1.3.1 GO:0000287 ... P00634 11884134
    27923 1kh4:B (2.4) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    27924 1kh4:B (2.4) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    27925 1kh4:B (2.4) BS03 MG 3.1.3.1 GO:0000287 ... P00634 11884134
    27926 1kh4:B (2.4) BS04 PO4 3.1.3.1 GO:0000287 ... P00634 11884134
    27927 1kh5:A (2.0) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    27928 1kh5:A (2.0) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    27929 1kh5:A (2.0) BS03 MG 3.1.3.1 GO:0000287 ... P00634 11884134
    27930 1kh5:A (2.0) BS04 AF3 3.1.3.1 GO:0000287 ... P00634 11884134
    27931 1kh5:B (2.0) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    27932 1kh5:B (2.0) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    27933 1kh5:B (2.0) BS03 MG 3.1.3.1 GO:0000287 ... P00634 11884134
    27934 1kh5:B (2.0) BS04 AF3 3.1.3.1 GO:0000287 ... P00634 11884134
    27935 1kh7:A (2.4) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    27936 1kh7:A (2.4) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    27937 1kh7:A (2.4) BS03 MG 3.1.3.1 GO:0000287 ... P00634 11884134
    27938 1kh7:B (2.4) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    27939 1kh7:B (2.4) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    27940 1kh7:B (2.4) BS03 MG 3.1.3.1 GO:0000287 ... P00634 11884134
    27941 1kh8:A (2.0) BS01 CS 4.6.1.18 GO:0003676 ... P61823 16199662
    27942 1kh9:A (2.5) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    27943 1kh9:A (2.5) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    27944 1kh9:A (2.5) BS03 MG 3.1.3.1 GO:0000287 ... P00634 11884134
    27945 1kh9:A (2.5) BS04 PO4 3.1.3.1 GO:0000287 ... P00634 11884134
    27946 1kh9:B (2.5) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    27947 1kh9:B (2.5) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    27948 1kh9:B (2.5) BS03 PO4 3.1.3.1 GO:0000287 ... P00634 11884134
    27949 1khb:A (1.854) BS01 MN 2.7.11.-
    4.1.1.32
    GO:0000287 ... P35558 11851336
    27950 1khe:A (2.4) BS01 MN 2.7.11.-
    4.1.1.32
    GO:0000287 ... P35558 11851336
    27951 1khf:A (2.02) BS01 MN 2.7.11.-
    4.1.1.32
    GO:0000287 ... P35558 11851336
    27952 1khf:A (2.02) BS02 PEP 2.7.11.-
    4.1.1.32
    GO:0000287 ... P35558 11851336
    27953 1khg:A (2.34) BS01 MN 2.7.11.-
    4.1.1.32
    GO:0000287 ... P35558 11851336
    27954 1khh:A (2.5) BS01 SAH 2.1.1.2 GO:0030731 ... P10868 12079381
    27955 1khh:B (2.5) BS01 SAH 2.1.1.2 GO:0030731 ... P10868 12079381
    27956 1khj:A (2.3) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    27957 1khj:A (2.3) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    27958 1khj:A (2.3) BS03 AF3 3.1.3.1 GO:0000287 ... P00634 11884134
    27959 1khj:B (2.3) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    27960 1khj:B (2.3) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    27961 1khj:B (2.3) BS03 AF3 3.1.3.1 GO:0000287 ... P00634 11884134
    27962 1khk:A (2.5) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    27963 1khk:A (2.5) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    27964 1khk:A (2.5) BS03 MG 3.1.3.1 GO:0000287 ... P00634 11884134
    27965 1khk:B (2.5) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    27966 1khk:B (2.5) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    27967 1khk:B (2.5) BS03 MG 3.1.3.1 GO:0000287 ... P00634 11884134
    27968 1khl:A (2.5) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    27969 1khl:A (2.5) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    27970 1khl:A (2.5) BS03 PO4 3.1.3.1 GO:0000287 ... P00634 11884134
    27971 1khl:B (2.5) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    27972 1khl:B (2.5) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    27973 1khl:B (2.5) BS03 PO4 3.1.3.1 GO:0000287 ... P00634 11884134
    27974 1khn:A (2.6) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    27975 1khn:A (2.6) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    27976 1khn:A (2.6) BS03 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    27977 1khn:B (2.6) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    27978 1khn:B (2.6) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    27979 1khn:B (2.6) BS03 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    27980 1kho:A (2.4) BS01 ZN 3.1.4.3 GO:0004629 ... Q9RF12 12009886
    27981 1kho:A (2.4) BS02 ZN 3.1.4.3 GO:0004629 ... Q9RF12 12009886
    27982 1kho:A (2.4) BS03 ZN 3.1.4.3 GO:0004629 ... Q9RF12 12009886
    27983 1kho:B (2.4) BS01 ZN 3.1.4.3 GO:0004629 ... Q9RF12 12009886
    27984 1kho:B (2.4) BS02 ZN 3.1.4.3 GO:0004629 ... Q9RF12 12009886
    27985 1kho:B (2.4) BS03 ZN 3.1.4.3 GO:0004629 ... Q9RF12 12009886
    27986 1khp:A (2.0) BS01 peptide 3.4.22.2 GO:0006508 ... P00784 15357669
    27987 1khq:A (1.6) BS01 peptide 3.4.22.2 GO:0006508 ... P00784 15357669
    27988 1khr:A (2.8) BS01 VIR 2.3.1.- GO:0016740 ... P50870 11841212
    27989 1khr:A (2.8) BS02 VIR 2.3.1.- GO:0016740 ... P50870 11841212
    27990 1khr:A (2.8) BS03 COA 2.3.1.- GO:0016740 ... P50870 11841212
    27991 1khr:A (2.8) BS04 COA 2.3.1.- GO:0016740 ... P50870 11841212
    27992 1khr:B (2.8) BS01 VIR 2.3.1.- GO:0016740 ... P50870 11841212
    27993 1khr:B (2.8) BS02 COA 2.3.1.- GO:0016740 ... P50870 11841212
    27994 1khr:B (2.8) BS03 COA 2.3.1.- GO:0016740 ... P50870 11841212
    27995 1khr:C (2.8) BS01 COA 2.3.1.- GO:0016740 ... P50870 11841212
    27996 1khr:C (2.8) BS02 COA 2.3.1.- GO:0016740 ... P50870 11841212
    27997 1khr:D (2.8) BS01 COA 2.3.1.- GO:0016740 ... P50870 11841212
    27998 1khr:D (2.8) BS02 COA 2.3.1.- GO:0016740 ... P50870 11841212
    27999 1khr:E (2.8) BS01 COA 2.3.1.- GO:0016740 ... P50870 11841212
    28000 1khr:E (2.8) BS02 VIR 2.3.1.- GO:0016740 ... P50870 11841212

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).