SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    28201 1kkm:B (2.8) BS01 CA 2.7.11.-
    2.7.4.-
    GO:0000155 ... Q9RE09 12359875
    28202 1kkm:C (2.8) BS01 CA 2.7.11.-
    2.7.4.-
    GO:0000155 ... Q9RE09 12359875
    28203 1kkp:A (1.93) BS01 PLP 2.1.2.1 GO:0004372 ... Q7SIB6 11877399
    28204 1kkp:A (1.93) BS02 SER 2.1.2.1 GO:0004372 ... Q7SIB6 11877399
    28205 1kkq:A (3.0) BS01 peptide ? GO:0003677 ... Q07869 11845213
    28206 1kkq:A (3.0) BS02 471 ? GO:0003677 ... Q07869 11845213
    28207 1kkq:B (3.0) BS01 peptide ? GO:0003677 ... Q07869 11845213
    28208 1kkq:B (3.0) BS02 peptide ? GO:0003677 ... Q07869 11845213
    28209 1kkq:B (3.0) BS03 471 ? GO:0003677 ... Q07869 11845213
    28210 1kkq:C (3.0) BS01 peptide ? GO:0003677 ... Q07869 11845213
    28211 1kkq:C (3.0) BS02 471 ? GO:0003677 ... Q07869 11845213
    28212 1kkq:D (3.0) BS01 peptide ? GO:0003677 ... Q07869 11845213
    28213 1kkq:D (3.0) BS02 471 ? GO:0003677 ... Q07869 11845213
    28214 1kkr:A (2.1) BS01 MG 4.3.1.2 GO:0003824 ... O66145 11796115
    28215 1kkr:A (2.1) BS02 2AS 4.3.1.2 GO:0003824 ... O66145 11796115
    28216 1kkr:B (2.1) BS01 2AS 4.3.1.2 GO:0003824 ... O66145 11796115
    28217 1kkr:B (2.1) BS02 MG 4.3.1.2 GO:0003824 ... O66145 11796115
    28218 1kkt:A (2.2) BS01 MAN 3.2.1.113 GO:0004571 ... P31723 11714724
    28219 1kl1:A (1.93) BS01 PLP 2.1.2.1 GO:0004372 ... Q7SIB6 11877399
    28220 1kl1:A (1.93) BS02 GLY 2.1.2.1 GO:0004372 ... Q7SIB6 11877399
    28221 1kl2:A (2.7) BS01 PLP 2.1.2.1 GO:0004372 ... Q7SIB6 11877399
    28222 1kl2:A (2.7) BS02 GLY 2.1.2.1 GO:0004372 ... Q7SIB6 11877399
    28223 1kl2:A (2.7) BS03 FON 2.1.2.1 GO:0004372 ... Q7SIB6 11877399
    28224 1kl2:A (2.7) BS04 GLY 2.1.2.1 GO:0004372 ... Q7SIB6 11877399
    28225 1kl2:A (2.7) BS05 FON 2.1.2.1 GO:0004372 ... Q7SIB6 11877399
    28226 1kl2:B (2.7) BS01 GLY 2.1.2.1 GO:0004372 ... Q7SIB6 11877399
    28227 1kl2:B (2.7) BS02 FON 2.1.2.1 GO:0004372 ... Q7SIB6 11877399
    28228 1kl2:B (2.7) BS03 PLP 2.1.2.1 GO:0004372 ... Q7SIB6 11877399
    28229 1kl2:B (2.7) BS04 GLY 2.1.2.1 GO:0004372 ... Q7SIB6 11877399
    28230 1kl2:B (2.7) BS05 FON 2.1.2.1 GO:0004372 ... Q7SIB6 11877399
    28231 1kl3:A (1.7) BS01 peptide ? GO:0009374 ... P22629 11910031
    28232 1kl3:B (1.7) BS01 peptide ? GO:0009374 ... P22629 11910031
    28233 1kl3:C (1.7) BS01 peptide ? GO:0009374 ... P22629 11910031
    28234 1kl3:D (1.7) BS01 peptide ? GO:0009374 ... P22629 11910031
    28235 1kl3:D (1.7) BS02 peptide ? GO:0009374 ... P22629 11910031
    28236 1kl5:A (1.8) BS01 peptide ? GO:0009374 ... P22629 11910031
    28237 1kl5:B (1.8) BS01 peptide ? GO:0009374 ... P22629 11910031
    28238 1kl5:C (1.8) BS01 peptide ? GO:0009374 ... P22629 11910031
    28239 1kl5:D (1.8) BS01 peptide ? GO:0009374 ... P22629 11910031
    28240 1kl6:A (1.8) BS01 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    28241 1kl6:A (1.8) BS02 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    28242 1kl6:A (1.8) BS03 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    28243 1kl6:A (1.8) BS04 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    28244 1kl6:A (1.8) BS05 ZN 3.4.24.27 GO:0004222 ... P00800 N/A
    28245 1kl6:A (1.8) BS06 ALA 3.4.24.27 GO:0004222 ... P00800 N/A
    28246 1kl7:A (2.7) BS01 PLP 4.2.3.1 GO:0004795 ... P16120 11756443
    28247 1kl7:B (2.7) BS01 PLP 4.2.3.1 GO:0004795 ... P16120 11756443
    28248 1kl8:A (-1.00) BS01 peptide ? GO:0005515 ... P60615 11790782
    28249 1kl9:A (1.9) BS01 ZN ? GO:0003676 ... P05198 11859078
    28250 1klf:B (2.79) BS01 MAN ? GO:0005515 ... P08191 12010488
    28251 1klf:D (2.79) BS01 MAN ? GO:0005515 ... P08191 12010488
    28252 1klf:F (2.79) BS01 MAN ? GO:0005515 ... P08191 12010488
    28253 1klf:H (2.79) BS01 MAN ? GO:0005515 ... P08191 12010488
    28254 1klf:J (2.79) BS01 MAN ? GO:0005515 ... P08191 12010488
    28255 1klf:L (2.79) BS01 MAN ? GO:0005515 ... P08191 12010488
    28256 1klf:N (2.79) BS01 MAN ? GO:0005515 ... P08191 12010488
    28257 1klf:P (2.79) BS01 MAN ? GO:0005515 ... P08191 12010488
    28258 1klg:A (2.4) BS01 peptide ? GO:0006955 ... P01903 12051920
    28259 1klg:B (2.4) BS01 peptide ? GO:0006955 ... P01911 12051920
    28260 1kli:H (1.69) BS01 CA 3.4.21.21 GO:0004252 ... P08709 12225752
    28261 1kli:H (1.69) BS02 BEN 3.4.21.21 GO:0004252 ... P08709 12225752
    28262 1klj:H (2.44) BS01 CA 3.4.21.21 GO:0004252 ... P08709 12225752
    28263 1klj:H (2.44) BS02 EDO 3.4.21.21 GO:0004252 ... P08709 12225752
    28264 1klk:A (2.3) BS01 PMD 1.5.1.3 GO:0003729 ... P16184 12037296 MOAD: ic50=0.21uM
    BindingDB: IC50=210nM
    28265 1klk:A (2.3) BS02 NDP 1.5.1.3 GO:0003729 ... P16184 12037296
    28266 1kll:A (1.5) BS01 MC ? N/A O05205 12121648
    28267 1klm:A (2.65) BS01 SPP 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P04585 9108091
    28268 1kln:A (3.2) BS01 dna 2.7.7.7 GO:0003676 ... P00582 8469987
    28269 1kln:A (3.2) BS02 dna 2.7.7.7 GO:0003676 ... P00582 8469987
    28270 1klq:A (-1.00) BS01 peptide ? GO:0000775 ... Q13257 11804586
    28271 1klr:A (-1.00) BS01 ZN ? N/A P08048 11884136
    28272 1kls:A (-1.00) BS01 ZN ? N/A P08048 11884136
    28273 1klu:A (1.93) BS01 peptide ? GO:0006955 ... P01903 12051920
    28274 1klu:B (1.93) BS01 peptide ? GO:0006955 ... P01911 12051920
    28275 1kly:A (1.5) BS01 UP6 4.1.1.23 GO:0004590 ... O26232 11900543 BindingDB: Ki=12400nM
    28276 1klz:A (1.5) BS01 CL 4.1.1.23 GO:0004590 ... O26232 11900543
    28277 1klz:A (1.5) BS02 U 4.1.1.23 GO:0004590 ... O26232 11900543
    28278 1km0:A (1.7) BS01 UP6 4.1.1.23 GO:0004590 ... O26232 11900543 BindingDB: Ki=12400nM
    28279 1km0:A (1.7) BS02 UP6 4.1.1.23 GO:0004590 ... O26232 11900543 BindingDB: Ki=12400nM
    28280 1km0:B (1.7) BS01 UP6 4.1.1.23 GO:0004590 ... O26232 11900543 BindingDB: Ki=12400nM
    28281 1km0:B (1.7) BS02 UP6 4.1.1.23 GO:0004590 ... O26232 11900543 BindingDB: Ki=12400nM
    28282 1km0:C (1.7) BS01 UP6 4.1.1.23 GO:0004590 ... O26232 11900543 BindingDB: Ki=12400nM
    28283 1km0:C (1.7) BS02 UP6 4.1.1.23 GO:0004590 ... O26232 11900543 BindingDB: Ki=12400nM
    28284 1km0:D (1.7) BS01 UP6 4.1.1.23 GO:0004590 ... O26232 11900543 BindingDB: Ki=12400nM
    28285 1km0:D (1.7) BS02 UP6 4.1.1.23 GO:0004590 ... O26232 11900543 BindingDB: Ki=12400nM
    28286 1km1:A (1.6) BS01 UP6 4.1.1.23 GO:0004590 ... O26232 11900543 BindingDB: Ki=12400nM
    28287 1km1:A (1.6) BS02 UP6 4.1.1.23 GO:0004590 ... O26232 11900543 BindingDB: Ki=12400nM
    28288 1km1:B (1.6) BS01 UP6 4.1.1.23 GO:0004590 ... O26232 11900543 BindingDB: Ki=12400nM
    28289 1km1:B (1.6) BS02 UP6 4.1.1.23 GO:0004590 ... O26232 11900543 BindingDB: Ki=12400nM
    28290 1km2:A (1.5) BS01 UP6 4.1.1.23 GO:0004590 ... O26232 11900543 BindingDB: Ki=12400nM
    28291 1km3:A (1.5) BS01 UP6 4.1.1.23 GO:0004590 ... O26232 11900543 BindingDB: Ki=12400nM
    28292 1km4:A (1.5) BS01 U 4.1.1.23 GO:0004590 ... O26232 11900543
    28293 1km5:A (1.5) BS01 UP6 4.1.1.23 GO:0004590 ... O26232 11900543 BindingDB: Ki=12400nM
    28294 1km6:A (1.5) BS01 OMP 4.1.1.23 GO:0004590 ... O26232 11900543
    28295 1kmb:1 (2.1) BS01 CA ? N/A P19999 9033386
    28296 1kmb:1 (2.1) BS02 CA ? N/A P19999 9033386
    28297 1kmb:1 (2.1) BS03 CA ? N/A P19999 9033386
    28298 1kmb:2 (2.1) BS01 CA ? N/A P19999 9033386
    28299 1kmb:2 (2.1) BS02 CA ? N/A P19999 9033386
    28300 1kmb:2 (2.1) BS03 CA ? N/A P19999 9033386
    28301 1kmb:3 (2.1) BS01 CA ? N/A P19999 9033386
    28302 1kmb:3 (2.1) BS02 CA ? N/A P19999 9033386
    28303 1kmb:3 (2.1) BS03 CA ? N/A P19999 9033386
    28304 1kmc:A (2.9) BS01 peptide 3.4.22.60 GO:0003723 ... P55210 N/A
    28305 1kmc:B (2.9) BS01 peptide 3.4.22.60 GO:0003723 ... P55210 N/A
    28306 1kme:A (2.0) BS01 RET ? GO:0005216 ... P02945 11829498
    28307 1kme:B (2.0) BS01 BGC ? GO:0005216 ... P02945 11829498
    28308 1kme:B (2.0) BS02 RET ? GO:0005216 ... P02945 11829498
    28309 1kmf:B (-1.00) BS01 peptide ? GO:0005179 ... P01308 11866509
    28310 1kmg:A (-1.00) BS01 ZN 1.15.1.1 GO:0000303 ... P00441 12237469
    28311 1kmh:A (3.4) BS01 TTX 7.1.2.2 GO:0005524 ... P06450 11904410
    28312 1kmh:B (3.4) BS01 TTX 7.1.2.2 GO:0005524 ... P00825 11904410
    28313 1kmi:Y (2.9) BS01 MG ? GO:0000156 ... P0AE67 12080332
    28314 1kmi:Y (2.9) BS02 BEF ? GO:0000156 ... P0AE67 12080332
    28315 1kmj:A (2.0) BS01 PLP 2.8.1.7
    3.13.1.-
    4.4.1.16
    GO:0001887 ... P77444 11827487
    28316 1kmk:A (2.2) BS01 SEC 2.8.1.7
    3.13.1.-
    4.4.1.16
    GO:0001887 ... P77444 11827487
    28317 1kmk:A (2.2) BS02 PLP 2.8.1.7
    3.13.1.-
    4.4.1.16
    GO:0001887 ... P77444 11827487
    28318 1kmm:A (2.6) BS01 HAM 6.1.1.21 GO:0004821 ... P60906 9207058
    28319 1kmm:B (2.6) BS01 HAM 6.1.1.21 GO:0004821 ... P60906 9207058
    28320 1kmm:C (2.6) BS01 HAM 6.1.1.21 GO:0004821 ... P60906 9207058
    28321 1kmm:D (2.6) BS01 HAM 6.1.1.21 GO:0004821 ... P60906 9207058
    28322 1kmn:A (2.8) BS01 HSO 6.1.1.21 GO:0004821 ... P60906 9207058
    28323 1kmn:A (2.8) BS02 ATP 6.1.1.21 GO:0004821 ... P60906 9207058
    28324 1kmn:B (2.8) BS01 HSO 6.1.1.21 GO:0004821 ... P60906 9207058
    28325 1kmn:B (2.8) BS02 ATP 6.1.1.21 GO:0004821 ... P60906 9207058
    28326 1kmn:C (2.8) BS01 HSO 6.1.1.21 GO:0004821 ... P60906 9207058
    28327 1kmn:C (2.8) BS02 ATP 6.1.1.21 GO:0004821 ... P60906 9207058
    28328 1kmn:D (2.8) BS01 HSO 6.1.1.21 GO:0004821 ... P60906 9207058
    28329 1kmn:D (2.8) BS02 ATP 6.1.1.21 GO:0004821 ... P60906 9207058
    28330 1kmq:A (1.55) BS01 MG 3.6.5.2 GO:0000281 ... P61586 12777804
    28331 1kmq:A (1.55) BS02 MG 3.6.5.2 GO:0000281 ... P61586 12777804
    28332 1kmq:A (1.55) BS03 GNP 3.6.5.2 GO:0000281 ... P61586 12777804
    28333 1kms:A (1.09) BS01 LIH 1.5.1.3 GO:0000900 ... P00374 12096917 BindingDB: IC50=0.98nM
    28334 1kms:A (1.09) BS02 NDP 1.5.1.3 GO:0000900 ... P00374 12096917
    28335 1kmv:A (1.05) BS01 LII 1.5.1.3 GO:0000900 ... P00374 12096917
    28336 1kmv:A (1.05) BS02 NDP 1.5.1.3 GO:0000900 ... P00374 12096917
    28337 1kmy:A (2.0) BS01 FE2 1.13.11.39 GO:0003824 ... P47228 9857017
    28338 1kmy:A (2.0) BS02 BPY 1.13.11.39 GO:0003824 ... P47228 9857017 MOAD: Kd=8uM
    28339 1kn1:A (2.2) BS01 CYC ? GO:0009535 ... P59856 10358042
    28340 1kn1:B (2.2) BS01 CYC ? GO:0009535 ... P59857 10358042
    28341 1kn2:H (1.9) BS01 PNE ? N/A P01863 11878955
    28342 1kn2:L (1.9) BS01 ZN ? GO:0005576 ... Q58EU8 11878955
    28343 1kn2:L (1.9) BS02 ZN ? GO:0005576 ... Q58EU8 11878955
    28344 1kn2:L (1.9) BS03 PNE ? GO:0005576 ... Q58EU8 11878955
    28345 1kn4:H (1.9) BS01 PDE ? N/A P01863 11878955
    28346 1kn4:L (1.9) BS01 ZN ? GO:0005576 ... Q58EU8 11878955
    28347 1kn4:L (1.9) BS02 ZN ? GO:0005576 ... Q58EU8 11878955
    28348 1kn4:L (1.9) BS03 PDE ? GO:0005576 ... Q58EU8 11878955
    28349 1kna:A (2.1) BS01 peptide ? N/A P05205 11859155
    28350 1knd:A (1.9) BS01 FE2 1.13.11.39 GO:0003824 ... P47228 9857017
    28351 1knd:A (1.9) BS02 FE2 1.13.11.39 GO:0003824 ... P47228 9857017
    28352 1knd:A (1.9) BS03 CAQ 1.13.11.39 GO:0003824 ... P47228 9857017
    28353 1kne:A (2.4) BS01 peptide ? N/A P05205 11859155
    28354 1knf:A (1.9) BS01 FE2 1.13.11.39 GO:0003824 ... P47228 9857017
    28355 1knf:A (1.9) BS02 FE2 1.13.11.39 GO:0003824 ... P47228 9857017
    28356 1knf:A (1.9) BS03 MBD 1.13.11.39 GO:0003824 ... P47228 9857017
    28357 1knj:A (2.8) BS01 MN 4.6.1.12 GO:0005515 ... P62617 11786530
    28358 1knj:A (2.8) BS02 C5P 4.6.1.12 GO:0005515 ... P62617 11786530
    28359 1knk:A (2.8) BS01 MN 4.6.1.12 GO:0005515 ... P62617 11786530
    28360 1knm:A (1.2) BS01 GAL 3.2.1.8 N/A P26514 11914070
    28361 1knm:A (1.2) BS02 GAL 3.2.1.8 N/A P26514 11914070
    28362 1kno:A (3.2) BS01 PNP ? GO:0002250 ... P01837 8524836
    28363 1kno:B (3.2) BS01 PNP ? N/A P01863 8524836
    28364 1kno:C (3.2) BS01 PNP ? GO:0002250 ... P01837 8524836
    28365 1kno:D (3.2) BS01 PNP ? N/A P01863 8524836
    28366 1kno:E (3.2) BS01 ZN ? GO:0002250 ... P01837 8524836
    28367 1kno:E (3.2) BS02 PNP ? GO:0002250 ... P01837 8524836
    28368 1kno:F (3.2) BS01 PNP ? N/A P01863 8524836
    28369 1knp:A (2.6) BS01 FAD 1.4.3.16
    1.5.99.-
    GO:0005737 ... P10902 11863440
    28370 1knr:A (2.5) BS01 FAD 1.4.3.16
    1.5.99.-
    GO:0005737 ... P10902 11863440 MOAD: Kd=8.1uM
    28371 1knt:A (1.6) BS01 SO4 ? GO:0004867 ... P12111 7533217
    28372 1knu:A (2.5) BS01 YPA ? GO:0003677 ... P37231 11831892 BindingDB: EC50=170nM, Kd=170nM
    28373 1knw:A (2.1) BS01 PLP 4.1.1.20 GO:0003824 ... P00861 N/A
    28374 1kny:A (2.5) BS01 MG 2.7.7.- GO:0016779 ... P05057 7577914
    28375 1kny:A (2.5) BS02 APC 2.7.7.- GO:0016779 ... P05057 7577914
    28376 1kny:A (2.5) BS03 KAN 2.7.7.- GO:0016779 ... P05057 7577914
    28377 1kny:A (2.5) BS04 KAN 2.7.7.- GO:0016779 ... P05057 7577914
    28378 1kny:B (2.5) BS01 MG 2.7.7.- GO:0016779 ... P05057 7577914
    28379 1kny:B (2.5) BS02 APC 2.7.7.- GO:0016779 ... P05057 7577914
    28380 1kny:B (2.5) BS03 KAN 2.7.7.- GO:0016779 ... P05057 7577914
    28381 1knz:A (2.45) BS01 rna ? GO:0003723 ... P03536 11792322
    28382 1knz:B (2.45) BS01 rna ? GO:0003723 ... P03536 11792322
    28383 1knz:C (2.45) BS01 rna ? GO:0003723 ... P03536 11792322
    28384 1knz:D (2.45) BS01 rna ? GO:0003723 ... P03536 11792322
    28385 1knz:I (2.45) BS01 rna ? GO:0003723 ... P03536 11792322
    28386 1knz:J (2.45) BS01 rna ? GO:0003723 ... P03536 11792322
    28387 1knz:M (2.45) BS01 rna ? GO:0003723 ... P03536 11792322
    28388 1knz:N (2.45) BS01 rna ? GO:0003723 ... P03536 11792322
    28389 1ko0:A (2.2) BS01 PLP 4.1.1.20 GO:0003824 ... P00861 N/A
    28390 1ko0:A (2.2) BS02 LYS 4.1.1.20 GO:0003824 ... P00861 N/A
    28391 1ko0:A (2.2) BS03 DLY 4.1.1.20 GO:0003824 ... P00861 N/A
    28392 1ko2:A (2.2) BS01 ZN 3.5.2.6 GO:0008800 ... Q9K2N0 18061205
    28393 1ko3:A (1.91) BS01 ZN 3.5.2.6 GO:0008800 ... Q9K2N0 18061205
    28394 1ko3:A (1.91) BS02 ZN 3.5.2.6 GO:0008800 ... Q9K2N0 18061205
    28395 1ko5:A (2.28) BS01 ATP 2.7.1.12 GO:0005975 ... P46859 12054802
    28396 1ko5:B (2.28) BS01 ATP 2.7.1.12 GO:0005975 ... P46859 12054802
    28397 1ko6:A (3.0) BS01 peptide 3.4.21.- GO:0005643 ... P52948 12191480
    28398 1ko6:C (3.0) BS01 peptide 3.4.21.- GO:0005643 ... P52948 12191480
    28399 1ko7:A (1.95) BS01 PO4 2.7.11.-
    2.7.4.-
    GO:0000155 ... Q9S1H5 11904409
    28400 1ko7:A (1.95) BS02 PO4 2.7.11.-
    2.7.4.-
    GO:0000155 ... Q9S1H5 11904409

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).