SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    2801 1ajc:B (2.5) BS03 MG 3.1.3.1 GO:0000287 ... P00634 7577993
    2802 1ajd:A (2.5) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 7577993
    2803 1ajd:A (2.5) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 7577993
    2804 1ajd:A (2.5) BS03 MG 3.1.3.1 GO:0000287 ... P00634 7577993
    2805 1ajd:B (2.5) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 7577993
    2806 1ajd:B (2.5) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 7577993
    2807 1ajd:B (2.5) BS03 MG 3.1.3.1 GO:0000287 ... P00634 7577993
    2808 1ajg:A (1.69) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 7634074
    2809 1ajh:A (1.69) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 7634074
    2810 1ajj:A (1.7) BS01 CA ? N/A P01130 9262405
    2811 1ajk:A (1.8) BS01 CA 3.2.1.73 GO:0004553 ... P23904 9489923
    2812 1ajk:B (1.8) BS01 CA 3.2.1.73 GO:0004553 ... P23904 9489923
    2813 1ajn:B (2.36) BS01 CA 3.5.1.11 GO:0016787 ... P06875 9813130
    2814 1ajn:B (2.36) BS02 AAN 3.5.1.11 GO:0016787 ... P06875 9813130 MOAD: Ki=2.32mM
    2815 1ajo:A (2.07) BS01 CA 3.2.1.73 GO:0004553 ... P23904 9489923
    2816 1ajo:B (2.07) BS01 CA 3.2.1.73 GO:0004553 ... P23904 9489923
    2817 1ajp:B (2.31) BS01 OMD 3.5.1.11 GO:0016787 ... P06875 9813130
    2818 1ajp:B (2.31) BS02 CA 3.5.1.11 GO:0016787 ... P06875 9813130
    2819 1ajq:B (2.05) BS01 CA 3.5.1.11 GO:0016787 ... P06875 9813130
    2820 1ajq:B (2.05) BS02 SPA 3.5.1.11 GO:0016787 ... P06875 9813130 MOAD: Ki=0.049mM
    2821 1ajs:A (1.6) BS01 PLA 2.6.1.1
    2.6.1.3
    GO:0003824 ... P00503 9211866
    2822 1ajs:B (1.6) BS01 PLA 2.6.1.1
    2.6.1.3
    GO:0003824 ... P00503 9211866
    2823 1ajv:A (2.0) BS01 NMB 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0004190 ... P03366 9083478 MOAD: Ki=19.1nM
    2824 1ajv:B (2.0) BS01 NMB 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0004190 ... P03366 9083478
    2825 1ajx:A (2.0) BS01 AH1 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0004190 ... P03366 9083478 MOAD: Ki=12.2nM
    2826 1ajx:B (2.0) BS01 AH1 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0004190 ... P03366 9083478
    2827 1ajy:A (-1.00) BS01 ZN ? GO:0000981 ... P25502 9303003
    2828 1ajy:A (-1.00) BS02 ZN ? GO:0000981 ... P25502 9303003
    2829 1ajy:B (-1.00) BS01 ZN ? GO:0000981 ... P25502 9303003
    2830 1ajy:B (-1.00) BS02 ZN ? GO:0000981 ... P25502 9303003
    2831 1ak0:A (1.8) BS01 ZN 3.1.30.1 GO:0003676 ... P24289 9726413
    2832 1ak0:A (1.8) BS02 ZN 3.1.30.1 GO:0003676 ... P24289 9726413
    2833 1ak0:A (1.8) BS03 ZN 3.1.30.1 GO:0003676 ... P24289 9726413
    2834 1ak0:A (1.8) BS04 ZN 3.1.30.1 GO:0003676 ... P24289 9726413
    2835 1ak0:A (1.8) BS05 THS 3.1.30.1 GO:0003676 ... P24289 9726413
    2836 1ak8:A (-1.00) BS01 CE ? GO:0005509 ... P62157 9305950
    2837 1ak8:A (-1.00) BS02 CE ? GO:0005509 ... P62157 9305950
    2838 1ak9:A (1.8) BS01 CA 3.4.21.62 GO:0004252 ... P00782 2684274
    2839 1ak9:A (1.8) BS02 CA 3.4.21.62 GO:0004252 ... P00782 2684274
    2840 1aka:A (2.1) BS01 PLP 2.6.1.1
    2.6.1.7
    GO:0004069 ... P00508 7819232
    2841 1aka:B (2.1) BS01 PO4 2.6.1.1
    2.6.1.7
    GO:0004069 ... P00508 7819232
    2842 1akb:A (2.3) BS01 PPD 2.6.1.1
    2.6.1.7
    GO:0004069 ... P00508 7819232
    2843 1akc:A (2.3) BS01 PPE 2.6.1.1
    2.6.1.7
    GO:0004069 ... P00508 7819232
    2844 1akd:A (1.8) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 9357977
    2845 1ake:A (2.0) BS01 AP5 2.7.4.3 GO:0000287 ... P69441 1548697
    2846 1ake:B (2.0) BS01 AP5 2.7.4.3 GO:0000287 ... P69441 1548697
    2847 1akh:A (2.5) BS01 dna ? GO:0000981 ... P0CY10 9838003
    2848 1akh:A (2.5) BS02 dna ? GO:0000981 ... P0CY10 9838003
    2849 1akh:B (2.5) BS01 dna ? GO:0003677 ... P0CY08 9838003
    2850 1akh:B (2.5) BS02 dna ? GO:0003677 ... P0CY08 9838003
    2851 1akj:A (2.65) BS01 peptide ? N/A P04439 9177355
    2852 1akk:A (-1.00) BS01 HEC ? GO:0005515 ... P00004 9245419
    2853 1akl:A (2.0) BS01 ZN 3.4.24.40 GO:0001869 ... Q03023 8690704
    2854 1akl:A (2.0) BS02 CA 3.4.24.40 GO:0001869 ... Q03023 8690704
    2855 1akl:A (2.0) BS03 CA 3.4.24.40 GO:0001869 ... Q03023 8690704
    2856 1akl:A (2.0) BS04 CA 3.4.24.40 GO:0001869 ... Q03023 8690704
    2857 1akl:A (2.0) BS05 CA 3.4.24.40 GO:0001869 ... Q03023 8690704
    2858 1akl:A (2.0) BS06 CA 3.4.24.40 GO:0001869 ... Q03023 8690704
    2859 1akl:A (2.0) BS07 CA 3.4.24.40 GO:0001869 ... Q03023 8690704
    2860 1akl:A (2.0) BS08 CA 3.4.24.40 GO:0001869 ... Q03023 8690704
    2861 1akl:A (2.0) BS09 CA 3.4.24.40 GO:0001869 ... Q03023 8690704
    2862 1akq:A (1.9) BS01 FMN ? GO:0009055 ... P00323 12206666 MOAD: Kd=0.79nM
    2863 1akr:A (1.58) BS01 FMN ? GO:0009055 ... P00323 9622492 MOAD: Kd=0.82nM
    2864 1aks:A (1.8) BS01 CA 3.4.21.4 GO:0004252 ... P00761 15299934
    2865 1akt:A (1.8) BS01 FMN ? GO:0009055 ... P00323 9622492 MOAD: Kd=3.2nM
    2866 1aku:A (1.9) BS01 FMN ? GO:0009055 ... P00323 12206666 MOAD: Kd=746nM
    2867 1akv:A (2.0) BS01 FMN ? GO:0009055 ... P00323 12206666 MOAD: Kd=0.0026nM
    2868 1akw:A (1.75) BS01 FMN ? GO:0009055 ... P00323 9622492 MOAD: Kd=2.6nM
    2869 1aky:A (1.63) BS01 AP5 2.7.4.3 GO:0003688 ... P07170 7670369
    2870 1aky:A (1.63) BS02 IMD 2.7.4.3 GO:0003688 ... P07170 7670369
    2871 1al2:4 (2.9) BS01 peptide 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15
    GO:0005198 ... P03300 9253417
    2872 1al6:A (1.85) BS01 OAA 2.3.3.1 GO:0006099 ... P23007 N/A
    2873 1al6:A (1.85) BS02 HAX 2.3.3.1 GO:0006099 ... P23007 N/A
    2874 1al7:A (2.6) BS01 FMN 1.1.3.15 GO:0003973 ... P05414 9144771
    2875 1al7:A (2.6) BS02 HST 1.1.3.15 GO:0003973 ... P05414 9144771
    2876 1al8:A (2.2) BS01 FMN 1.1.3.15 GO:0003973 ... P05414 9144771
    2877 1al8:A (2.2) BS02 DHP 1.1.3.15 GO:0003973 ... P05414 9144771 MOAD: Ki=4.8uM
    2878 1ala:A (2.25) BS01 CA ? GO:0001786 ... P17153 8471604
    2879 1ala:A (2.25) BS02 CA ? GO:0001786 ... P17153 8471604
    2880 1ala:A (2.25) BS03 CA ? GO:0001786 ... P17153 8471604
    2881 1alc:A (1.7) BS01 CA ? GO:0003796 ... P12065 2769757
    2882 1alh:A (2.5) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 7703848
    2883 1alh:A (2.5) BS02 PO4 3.1.3.1 GO:0000287 ... P00634 7703848
    2884 1alh:B (2.5) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 7703848
    2885 1alh:B (2.5) BS02 PO4 3.1.3.1 GO:0000287 ... P00634 7703848
    2886 1ali:A (2.2) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 8520475
    2887 1ali:A (2.2) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 8520475
    2888 1ali:A (2.2) BS03 MG 3.1.3.1 GO:0000287 ... P00634 8520475
    2889 1ali:A (2.2) BS04 PO4 3.1.3.1 GO:0000287 ... P00634 8520475
    2890 1ali:B (2.2) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 8520475
    2891 1ali:B (2.2) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 8520475
    2892 1ali:B (2.2) BS03 MG 3.1.3.1 GO:0000287 ... P00634 8520475
    2893 1ali:B (2.2) BS04 PO4 3.1.3.1 GO:0000287 ... P00634 8520475
    2894 1alj:A (2.6) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 8520475
    2895 1alj:A (2.6) BS02 MG 3.1.3.1 GO:0000287 ... P00634 8520475
    2896 1alj:A (2.6) BS03 PO4 3.1.3.1 GO:0000287 ... P00634 8520475
    2897 1alj:B (2.6) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 8520475
    2898 1alj:B (2.6) BS02 MG 3.1.3.1 GO:0000287 ... P00634 8520475
    2899 1alj:B (2.6) BS03 PO4 3.1.3.1 GO:0000287 ... P00634 8520475
    2900 1alk:A (2.0) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 2010919
    2901 1alk:A (2.0) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 2010919
    2902 1alk:A (2.0) BS03 MG 3.1.3.1 GO:0000287 ... P00634 2010919
    2903 1alk:A (2.0) BS04 PO4 3.1.3.1 GO:0000287 ... P00634 2010919
    2904 1alk:B (2.0) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 2010919
    2905 1alk:B (2.0) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 2010919
    2906 1alk:B (2.0) BS03 MG 3.1.3.1 GO:0000287 ... P00634 2010919
    2907 1alk:B (2.0) BS04 PO4 3.1.3.1 GO:0000287 ... P00634 2010919
    2908 1aln:A (2.3) BS01 ZN 3.5.4.5 GO:0001884 ... P0ABF6 8634261
    2909 1aln:A (2.3) BS02 CTD 3.5.4.5 GO:0001884 ... P0ABF6 8634261
    2910 1alq:A (1.8) BS01 CO3 3.5.2.6 GO:0008800 ... P00807 9220963
    2911 1alv:A (1.9) BS01 CA ? GO:0005509 ... P04574 9228946
    2912 1alv:A (1.9) BS02 CA ? GO:0005509 ... P04574 9228946
    2913 1alv:A (1.9) BS03 CA ? GO:0005509 ... P04574 9228946
    2914 1alv:A (1.9) BS04 CA ? GO:0005509 ... P04574 9228946
    2915 1alv:B (1.9) BS01 CA ? GO:0005509 ... P04574 9228946
    2916 1alv:B (1.9) BS02 CA ? GO:0005509 ... P04574 9228946
    2917 1alv:B (1.9) BS03 CA ? GO:0005509 ... P04574 9228946
    2918 1alv:B (1.9) BS04 CA ? GO:0005509 ... P04574 9228946
    2919 1alw:A (2.03) BS01 CA ? GO:0005509 ... P04574 9228946
    2920 1alw:A (2.03) BS02 CA ? GO:0005509 ... P04574 9228946
    2921 1alw:A (2.03) BS03 CA ? GO:0005509 ... P04574 9228946
    2922 1alw:A (2.03) BS04 CA ? GO:0005509 ... P04574 9228946
    2923 1alw:A (2.03) BS05 ISA ? GO:0005509 ... P04574 9228946 MOAD: Ki=0.3uM
    2924 1alw:B (2.03) BS01 CA ? GO:0005509 ... P04574 9228946
    2925 1alw:B (2.03) BS02 CA ? GO:0005509 ... P04574 9228946
    2926 1alw:B (2.03) BS03 CA ? GO:0005509 ... P04574 9228946
    2927 1alw:B (2.03) BS04 CA ? GO:0005509 ... P04574 9228946
    2928 1alw:B (2.03) BS05 ISA ? GO:0005509 ... P04574 9228946 MOAD: Ki=0.3uM
    2929 1am1:A (2.0) BS01 ADP ? GO:0005524 ... P02829 9230303 MOAD: Kd=132mM
    2930 1am4:D (2.7) BS01 MG 3.6.5.2 GO:0000139 ... P60953 9262406
    2931 1am4:D (2.7) BS02 GNP 3.6.5.2 GO:0000139 ... P60953 9262406
    2932 1am4:E (2.7) BS01 MG 3.6.5.2 GO:0000139 ... P60953 9262406
    2933 1am4:E (2.7) BS02 GNP 3.6.5.2 GO:0000139 ... P60953 9262406
    2934 1am4:F (2.7) BS01 MG 3.6.5.2 GO:0000139 ... P60953 9262406
    2935 1am4:F (2.7) BS02 GNP 3.6.5.2 GO:0000139 ... P60953 9262406
    2936 1am6:A (2.0) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 N/A
    2937 1am9:A (2.3) BS01 dna ? GO:0046983 ... P36956 9634703
    2938 1am9:A (2.3) BS02 dna ? GO:0046983 ... P36956 9634703
    2939 1am9:B (2.3) BS01 dna ? GO:0046983 ... P36956 9634703
    2940 1am9:B (2.3) BS02 dna ? GO:0046983 ... P36956 9634703
    2941 1am9:C (2.3) BS01 dna ? GO:0046983 ... P36956 9634703
    2942 1am9:C (2.3) BS02 dna ? GO:0046983 ... P36956 9634703
    2943 1am9:D (2.3) BS01 dna ? GO:0046983 ... P36956 9634703
    2944 1am9:D (2.3) BS02 dna ? GO:0046983 ... P36956 9634703
    2945 1ama:A (2.3) BS01 PLA 2.6.1.1
    2.6.1.7
    GO:0003824 ... P00508 1522585
    2946 1amf:A (1.75) BS01 MOO ? GO:0015412 ... P37329 9302996
    2947 1amh:A (2.5) BS01 CA 3.4.21.4 GO:0004252 ... P00763 10429182
    2948 1amh:B (2.5) BS01 CA 3.4.21.4 GO:0004252 ... P00763 10429182
    2949 1ami:A (2.0) BS01 SF4 4.2.1.3 GO:0003994 ... P20004 7675781
    2950 1ami:A (2.0) BS02 MIC 4.2.1.3 GO:0003994 ... P20004 7675781
    2951 1amj:A (2.0) BS01 SO4 4.2.1.3 GO:0003994 ... P20004 7675781
    2952 1amj:A (2.0) BS02 SF4 4.2.1.3 GO:0003994 ... P20004 7675781
    2953 1amk:A (1.83) BS01 PGA 5.3.1.1 GO:0004807 ... P48499 10235625 MOAD: Ki=0.05mM
    2954 1amn:A (2.8) BS01 NAF 3.1.1.7 GO:0001507 ... P04058 N/A
    2955 1amo:A (2.6) BS01 FAD 1.6.2.4 GO:0003958 ... P00388 9237990
    2956 1amo:A (2.6) BS02 FMN 1.6.2.4 GO:0003958 ... P00388 9237990
    2957 1amo:A (2.6) BS03 NAP 1.6.2.4 GO:0003958 ... P00388 9237990
    2958 1amo:B (2.6) BS01 FAD 1.6.2.4 GO:0003958 ... P00388 9237990
    2959 1amo:B (2.6) BS02 FMN 1.6.2.4 GO:0003958 ... P00388 9237990
    2960 1amo:B (2.6) BS03 NAP 1.6.2.4 GO:0003958 ... P00388 9237990
    2961 1amp:A (1.8) BS01 ZN 3.4.11.10 GO:0006508 ... Q01693 8087555
    2962 1amp:A (1.8) BS02 ZN 3.4.11.10 GO:0006508 ... Q01693 8087555
    2963 1amq:A (2.2) BS01 PMP 2.6.1.1 GO:0003824 ... P00509 7896726
    2964 1amr:A (2.1) BS01 PMP 2.6.1.1 GO:0003824 ... P00509 7896726
    2965 1ams:A (2.7) BS01 PMP 2.6.1.1 GO:0003824 ... P00509 7896726
    2966 1ams:A (2.7) BS02 GUA 2.6.1.1 GO:0003824 ... P00509 7896726
    2967 1amu:A (1.9) BS01 PHE 5.1.1.11 N/A P0C061 9250661
    2968 1amu:A (1.9) BS02 AMP 5.1.1.11 N/A P0C061 9250661
    2969 1amu:B (1.9) BS01 MG 5.1.1.11 N/A P0C061 9250661
    2970 1amu:B (1.9) BS02 PHE 5.1.1.11 N/A P0C061 9250661
    2971 1amu:B (1.9) BS03 AMP 5.1.1.11 N/A P0C061 9250661
    2972 1amw:A (1.85) BS01 ADP ? GO:0005524 ... P02829 9230303 MOAD: Kd=29uM
    2973 1amy:A (2.8) BS01 CA 3.2.1.1 GO:0004556 ... P04063 8196040
    2974 1amy:A (2.8) BS02 CA 3.2.1.1 GO:0004556 ... P04063 8196040
    2975 1amy:A (2.8) BS03 CA 3.2.1.1 GO:0004556 ... P04063 8196040
    2976 1amz:A (1.8) BS01 NMX 2.3.3.1 GO:0006099 ... P23007 N/A
    2977 1an0:A (2.8) BS01 GDP 3.6.5.2 GO:0000139 ... P60953 N/A
    2978 1an0:B (2.8) BS01 GDP 3.6.5.2 GO:0000139 ... P60953 N/A
    2979 1an1:E (2.03) BS01 CA 3.4.21.4 GO:0004252 ... P00761 9384562
    2980 1an2:A (2.9) BS01 dna ? GO:0046983 ... P61244 8479534
    2981 1an4:A (2.9) BS01 dna ? GO:0046983 ... P22415 8306960
    2982 1an4:A (2.9) BS02 dna ? GO:0046983 ... P22415 8306960
    2983 1an4:B (2.9) BS01 dna ? GO:0046983 ... P22415 8306960
    2984 1an4:B (2.9) BS02 dna ? GO:0046983 ... P22415 8306960
    2985 1an9:A (2.5) BS01 FAD 1.4.3.3 GO:0003884 ... P00371 9399588
    2986 1an9:A (2.5) BS02 BE2 1.4.3.3 GO:0003884 ... P00371 9399588
    2987 1an9:B (2.5) BS01 FAD 1.4.3.3 GO:0003884 ... P00371 9399588
    2988 1an9:B (2.5) BS02 BE2 1.4.3.3 GO:0003884 ... P00371 9399588
    2989 1anb:A (2.8) BS01 CA 3.4.21.4 GO:0004252 ... P00763 1554694
    2990 1anc:A (2.2) BS01 CA 3.4.21.4 GO:0004252 ... P00763 1554694
    2991 1and:A (2.3) BS01 CU 3.4.21.4 GO:0004252 ... P00763 8448149
    2992 1anf:A (1.67) BS01 GLC ? GO:0005515 ... P0AEX9 9309217
    2993 1anf:A (1.67) BS02 GLC ? GO:0005515 ... P0AEX9 9309217
    2994 1ani:A (2.5) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 7473737
    2995 1ani:A (2.5) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 7473737
    2996 1ani:A (2.5) BS03 ZN 3.1.3.1 GO:0000287 ... P00634 7473737
    2997 1ani:A (2.5) BS04 PO4 3.1.3.1 GO:0000287 ... P00634 7473737
    2998 1ani:A (2.5) BS05 PO4 3.1.3.1 GO:0000287 ... P00634 7473737
    2999 1ani:A (2.5) BS06 PO4 3.1.3.1 GO:0000287 ... P00634 7473737
    3000 1ani:B (2.5) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 7473737

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).